Citrus Sinensis ID: 021827

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRMGKKRGGTRETNDKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAIDDAKNSGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHDDDKRFRKKQKKRSKEKQGELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASKFNSVDGLVTSSGKKKKSKNRGMGLTVQLSQEPEVGLGGPSTWGDE
Secondary Structure (PSIPRED)
ccccHHcccccccccccccccccccHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHcccccccccccccccccHHHHHHcccccccccccccccHHHHHccccccHHcHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccHHHcccccccccEEEEccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccccccEHHHHHHHHHHcccccccHHHHccccccccccHHHHHHHHHHHHHHccccEEEccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccHHHHccccccHHcHccccccccccccccccccccccccccccccccccccccccccccEcccccHHHHHHHHHHcHHccccccccccccccHHHHHHcccccccccccccccccccccccccccEEEccccccccccccccccEccccccEcccccccccccc
Coil and Loop (DISEMBL)
MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNlnnlnlqgnpvAEYDKLAKKVKTLlpnlcifnarpidritknekdnivdkvndssnnsddtikvrmgkkrggtretndklsneeiqwsksdsaaGKKLKKKSkekegeldaiddaknsggvvpgqnkdanlngsgdveMEKDLkrkgrktsenlsnkgiqvhdddKRFRKKQKKRSKEKQGELDIIDNGETAFSELFSaniagnpgfdgdnnmvneaskfnsvdglvtssgkkkksknrgmgltvqlsqepevglggpstwgde
Flexible Loop (DISEMBL)
MDDVTSVVSLralilndneivsICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLlpnlcifnarpidritknekdnivdkvndssnnsddtikvrmgkkrggtretndklsneeiqwsksdsaagkklkkkskekegeldaiddaknsggvvpgqnkdanlngsgdvemEKDLkrkgrktsenlsnkgiqvhdddkrfrkkqkkrskekqgeldiidnGETAFSELFSANIAGNPGFDGDNNMVNEASKFnsvdglvtssgkkkksknrgmgltvqlsqepevglggpstwgde
Low Complexity Region (SEG)
MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFnlnnlnlQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVndssnnsddTIKVRMGKKRGGTRETNDKLSNEEIQWsksdsaagkklkkkskekegeldAIDDAKNSGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHdddkrfrkkqkkrskekQGELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASKFNSVDGLVTssgkkkkskNRGMGLTVQLSQEPEVGLGGPSTWGDE
Disordered region (IsUnstruct)
*****SVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRIT*******************************************************************************************************************************************************AFSELFSANI***************************************************************
Disordered Region (DISOPRED)
*****SVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA**********************************************************************************************************************************************************NGETAFSELF*******************************************************************
Disordered Region (DISEMBL)
MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRM*************LSNEEIQWS********************LDAIDDAKNSGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHD******************ELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASKFNSVDG***************MGLTVQLSQEPE************
Disordered Region (DISPRO)
MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID*I***********************************************************************************************************************I***D****FRKK***********LDIIDNGETAFSELFSANIA******************NS*************************SQE**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRMGKKRGGTRETNDKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAIDDAKNSGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHDDDKRFRKKQKKRSKEKQGELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASKFNSVDGLVTSSGKKKKSKNRGMGLTVQLSQEPEVGLGGPSTWGDE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
224131776	474	predicted protein [Populus trichocarpa]	0.814	0.527	0.390	2e-32
255565717	485	Protein phosphatase 1 regulatory subunit	0.840	0.531	0.407	7e-27
359479546	446	PREDICTED: protein phosphatase 1 regulat	0.729	0.502	0.365	4e-25
147772156	560	hypothetical protein VITISV_001509 [Viti	0.729	0.4	0.365	2e-24
449443646	478	PREDICTED: leucine-rich repeat-containin	0.879	0.564	0.321	2e-20
449462407	479	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.872	0.559	0.295	1e-17
359806683	472	uncharacterized protein LOC100782829 [Gl	0.732	0.476	0.326	5e-16
357453175	468	Protein phosphatase 1 regulatory subunit	0.778	0.510	0.317	2e-15
356543614	471	PREDICTED: protein phosphatase 1 regulat	0.762	0.496	0.344	3e-15
388511123	474	unknown [Lotus japonicus]	0.778	0.504	0.340	4e-15

>gi|224131776|ref|XP_002328105.1| predicted protein [Populus trichocarpa] gi|222837620|gb|EEE75985.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/274 (39%), Positives = 157/274 (57%), Gaps = 24/274 (8%)

Query: 39  SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSS 98
           S   +L NLNL GNP+AE  K+ KKV+  LPNL IFNARP+D+  +NE   I  + +DSS
Sbjct: 220 SSLVDLKNLNLLGNPIAENAKITKKVQKFLPNLHIFNARPVDKSARNE---ISGRADDSS 276

Query: 99  NNSDDTIKVRMGKKRGGTRETNDKLSNEEIQWSKSDSA---AGKKLKKKSKEKEGELDAI 155
               + +     KK+  TR+ N      + +    D+A   A K L++K K+ +G++  +
Sbjct: 277 LIPTNELDYHSEKKKDHTRDVNSSKHVTDQRRDHFDNASDDAEKDLRQKRKKTKGKVSKM 336

Query: 156 DDAKNSGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHDDDKRFRKKQ 215
           ++A           KD       D  +EK LKRK +   E L N   ++H+DD+   +K+
Sbjct: 337 EEAST-------DEKD-------DAVIEKKLKRK-KPHEELLKNNDDKIHNDDRTKVEKK 381

Query: 216 KKRSKEKQ--GELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASKFNSVDGLVTSS 273
            K  K ++   ELDIIDNGE +F++LFS +   N   + ++  V++ S  N + GL+  S
Sbjct: 382 LKSKKSRKELSELDIIDNGEVSFADLFSVDAVENLKHNSESKTVDK-SGINVLGGLLVVS 440

Query: 274 GKKKKSKNRGMGLTVQLSQEPEVGLGGPSTWGDE 307
            KKKK+KN+G+  TV LS   EVG+GGPSTWGDE
Sbjct: 441 AKKKKTKNQGLVSTVPLSPAVEVGMGGPSTWGDE 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565717|ref|XP_002523848.1| Protein phosphatase 1 regulatory subunit SDS22, putative [Ricinus communis] gi|223536936|gb|EEF38574.1| Protein phosphatase 1 regulatory subunit SDS22, putative [Ricinus communis]

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 113/277 (40%), Positives = 159/277 (57%), Gaps = 19/277 (6%)

Query: 39  SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSS 98
           S   +L NLNLQGNP++E DKL+KK+  LLPNL IFNARP+D+ TK        +++D S
Sbjct: 220 SSIVDLKNLNLQGNPISEIDKLSKKILKLLPNLHIFNARPLDKGTKKGGSG---RIDDFS 276

Query: 99  NNSDDTIKVRMGKKRGGTRETNDKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAIDDA 158
               + + V   K++   R+     + +  +  K      KK++ K  EKE      D  
Sbjct: 277 LIPVNELAVPREKQKNSLRKIGHDYATDA-KTEKDLKKKNKKVEDKLSEKE------DVP 329

Query: 159 KNSGGVVPGQNK-----DANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHDD--DKRF 211
              GG V  + K         + S D+ +E D K+K +K +E  S K +QV  D  D   
Sbjct: 330 VYEGGEVMVEKKLKRKLSLEQDDSNDLGIE-DGKQKRKKANEEFSKKDVQVDKDDYDAVK 388

Query: 212 RKKQKKRSKEKQGELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASK-FNSVDGLV 270
           RK + K+SKE+Q ELD+ID+G+T F++LF+ N A +    G+  M+++A K  N + G+V
Sbjct: 389 RKSKSKKSKEEQDELDVIDDGDTPFADLFAVNTADSLKVSGEKKMLDKAGKDINLMGGVV 448

Query: 271 TSSGKKKKSKNRGMGLTVQLSQEPEVGLGGPSTWGDE 307
           T SGKKKK+KN G G  VQL    EVG+GGPSTWGDE
Sbjct: 449 TVSGKKKKTKNCGAGSIVQLPAVIEVGMGGPSTWGDE 485

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479546|ref|XP_002273076.2| PREDICTED: protein phosphatase 1 regulatory subunit 7-like [Vitis vinifera] gi|296084874|emb|CBI28283.3| unnamed protein product [Vitis vinifera]

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 131/268 (48%), Gaps = 44/268 (16%)

Query: 41  FFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNN 100
             NL N NLQGNP+A  +KLAKK K LLPNL IFNARP D+ITK EK    DKV+D   N
Sbjct: 222 LVNLKNFNLQGNPIAVKEKLAKKTKRLLPNLQIFNARPTDKITKYEKG---DKVDDFPLN 278

Query: 101 SDDTIKVRMGKKRGGTRETNDKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAIDDAKN 160
               ++V+   KR   R   +K  +  +  S         L  + + K+ +  A D+AK 
Sbjct: 279 VATELEVKKKDKRDHGRAEKNK--HNSMTESGLAHLVNGDLDVEKELKKKKRKANDEAKK 336

Query: 161 SGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHDDDKRFRKKQKKRSK 220
               VP   +D  +       +E++L +K RK                            
Sbjct: 337 K---VPILKEDHTM-------VERELNKKARKV--------------------------- 359

Query: 221 EKQGELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASKFNSVDGLVTSSGKKKKSK 280
            ++G L  ID+GET F ELF+A  A N  +  ++         NS  G V+   KKKK+K
Sbjct: 360 -ERGGLSAIDDGETPFMELFAAETAENSKYSVEDRTDKAFQDSNSAGGSVSLGAKKKKTK 418

Query: 281 NRGMGLTVQLSQEP-EVGLGGPSTWGDE 307
            RG+  ++QL   P EVGLGGPSTW DE
Sbjct: 419 RRGISPSIQLLSLPVEVGLGGPSTWDDE 446

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772156|emb|CAN69048.1| hypothetical protein VITISV_001509 [Vitis vinifera]

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 131/268 (48%), Gaps = 44/268 (16%)

Query: 41  FFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNN 100
             NL N NLQGNP+A  +KLAKK K LLPNL IFNARP D+ITK EK    DKV+D   N
Sbjct: 336 LVNLKNFNLQGNPIAVKEKLAKKTKRLLPNLQIFNARPTDKITKYEKG---DKVDDFPLN 392

Query: 101 SDDTIKVRMGKKRGGTRETNDKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAIDDAKN 160
               ++V+   KR   R   +K  +  +  S         L  + + K+ +  A D+AK 
Sbjct: 393 VATELEVKKKDKRDHGRAEKNK--HNSMTESGLVHLVNGDLDVEKELKKKKRKANDEAKK 450

Query: 161 SGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHDDDKRFRKKQKKRSK 220
               VP   +D  +       +E++L +K RK                            
Sbjct: 451 K---VPILKEDHTM-------VERELNKKARKV--------------------------- 473

Query: 221 EKQGELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASKFNSVDGLVTSSGKKKKSK 280
            ++G L  ID+GET F ELF+A  A N  +  ++         NS  G V+   KKKK+K
Sbjct: 474 -ERGGLGAIDDGETPFMELFAAETAENSKYSVEDRTDKAFQDSNSAGGSVSLGAKKKKTK 532

Query: 281 NRGMGLTVQLSQEP-EVGLGGPSTWGDE 307
            RG+  ++QL   P EVGLGGPSTW DE
Sbjct: 533 RRGISPSIQLLSLPVEVGLGGPSTWDDE 560

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443646|ref|XP_004139588.1| PREDICTED: leucine-rich repeat-containing protein 9-like [Cucumis sativus]

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 151/286 (52%), Gaps = 16/286 (5%)

Query: 23  ICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRI 82
           I +   +K L++LG       L NLNLQGNP+AE  KL KK++ L+P L + NARPID+ 
Sbjct: 208 IVRWSDLKVLSSLGY------LRNLNLQGNPIAESAKLDKKIRRLVPGLRVLNARPIDKC 261

Query: 83  TKNEKDNIVDKVNDSSNNSDDTIKVRMGKKRGGTRETNDKLSNEEIQWSKSDSAAGKKLK 142
            +NE DN  DK +D+   + +  K +  +K  G  ET+  +   +    K D   G  ++
Sbjct: 262 IQNENDNGSDKEDDTPIRNLERQKEKKDRKLTGNVETHPSVQGTD---GKLDHTNGADVE 318

Query: 143 KKSKEKEGELDAIDDAKNSGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGI 202
           +KS+ K+  +D I   +    VVP  +K  N +G+ D++ EK + ++ R  S       +
Sbjct: 319 RKSERKKRNMDKITREEK---VVPSLDKKIN-HGTNDIDEEKKISKQKRAKSN--KEPSL 372

Query: 203 QVHDDD-KRFRKKQKKRSKEKQGELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEAS 261
            +H +   +  K +KK  KE + ++D+ID+ E  F +LF  N+  +     +     E  
Sbjct: 373 PIHKETLTKIEKHKKKAKKEGERQVDVIDDTEVPFEQLFGDNLVEDMDAVLEKVGEKEVE 432

Query: 262 KFNSVDGLVTSSGKKKKSKNRGMGLTVQLSQEPEVGLGGPSTWGDE 307
           + N    L + S  +K+SK++     +Q+S   E+G+ G STWGDE
Sbjct: 433 EMNLKPNLASFSANRKESKSQDRVGRLQISPIVEIGMDGISTWGDE 478

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462407|ref|XP_004148932.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101214183 [Cucumis sativus]

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 143/288 (49%), Gaps = 20/288 (6%)

Query: 23  ICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRI 82
           I +   +K L++LG       L N+ + GNP+AE  KL KK+  L+P L + NAR ID+ 
Sbjct: 209 IMRWSDLKVLSSLGY------LRNIYVXGNPIAESAKLDKKICRLVPGLRVLNARSIDKC 262

Query: 83  TKNEKDNIVDKVNDSSNNSDDTIKVRMGKKRGGTRETNDKLSNEEIQWSKSDSAAGKKLK 142
            +NE DN  DK +D+   S D  K +  +K  G  ET+  +   +    K D   G  + 
Sbjct: 263 IQNENDNGSDKEDDTPIRSLDRQKEKKDRKLNGNVETHPSVQGTD---GKLDHTNGADVD 319

Query: 143 KKSKEKEGELDAIDDAKNSGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGI 202
           +K + K+ ++D +   +    V+P  +   NL G+ D++ EK   ++ R  S       +
Sbjct: 320 RKLERKKRKMDKVTREEK---VIPSLDNKINL-GTNDIDKEKKTSKQKRTKSN--KEPSL 373

Query: 203 QVHDDD-KRFRKKQKKRSKEKQGELDIIDNGETAFSELFSANIAGNPGFDGDNNMV--NE 259
            +H +   +    +KK  KE + ++ +ID+ E  F +LF  ++  +   D     V   E
Sbjct: 374 PIHKETLTKIENHKKKAKKEGERQIGVIDDAEVPFEQLFGDDLIED--MDAVLQKVGEKE 431

Query: 260 ASKFNSVDGLVTSSGKKKKSKNRGMGLTVQLSQEPEVGLGGPSTWGDE 307
             + N    L + S  +K+SK++     +Q+S   E+G+ G STWGDE
Sbjct: 432 VEEMNLKPNLASFSANRKESKSQDRVGRLQISPIVEIGMDGISTWGDE 479

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806683|ref|NP_001241543.1| uncharacterized protein LOC100782829 [Glycine max] gi|255641324|gb|ACU20939.1| unknown [Glycine max]

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 136/276 (49%), Gaps = 51/276 (18%)

Query: 49  LQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSS--NNSDDTIK 106
           LQGNP A  +K+ +K+K  L  L IFNARP+D+ T+N+K +IVD   D S   N +D I+
Sbjct: 230 LQGNPAATVNKVMRKIKKALSKLQIFNARPVDKDTENKKGSIVDGTRDFSVDQNENDHIE 289

Query: 107 V--------RMGKKRGGTRETN---DKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAI 155
                    +  KKR  T + +   D++ +EE +  K D A         ++KE  +  +
Sbjct: 290 AADDLDSGRKSSKKRKRTVDASKKEDRVVDEENKGHKKDKA--------DRKKESLITNV 341

Query: 156 DDAKNSGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHDDDKRFRKKQ 215
           D         PG              ME    +K  K  +   +KG  + ++  +  KK 
Sbjct: 342 D---------PG--------------MENKSTKKKAKKDDKPLDKGFALEENVSKVEKKL 378

Query: 216 KKRSK-EKQGELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASK--FNSVDGLVTS 272
           KK+ K ++Q ELD+ID+ E +F+ELF  N A N     +    ++A K         VTS
Sbjct: 379 KKQHKNDEQSELDVIDDAEASFAELFKINDAENLNLADEMKAQDKAPKDVMKLAGDPVTS 438

Query: 273 SGKKKKSKNRGM-GLTVQLSQEPEVGLGGPSTWGDE 307
             K K +K + M  L+  ++   E+G+GGPSTWGDE
Sbjct: 439 FAKHKNAKIQNMESLSAPVA---EIGMGGPSTWGDE 471

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453175|ref|XP_003596864.1| Protein phosphatase 1 regulatory subunit [Medicago truncatula] gi|355485912|gb|AES67115.1| Protein phosphatase 1 regulatory subunit [Medicago truncatula]

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 132/268 (49%), Gaps = 29/268 (10%)

Query: 44  LNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDD 103
           L NLNLQGNPVA  +K+ +K+K  LP L +FNA+PID+ TKNEK ++ D  +D S +  D
Sbjct: 225 LRNLNLQGNPVATNEKVIRKIKNALPKLQVFNAKPIDKDTKNEKGHMTDDAHDFSFDHVD 284

Query: 104 TIKVRMGKKRGGTRETNDKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAIDDAKNSGG 163
                                NE+     +D     K +K++ +   +   + D +N+G 
Sbjct: 285 --------------------QNEDDHLEAADKRKSNKKRKETADASEKEAGVYDKENTGH 324

Query: 164 -VVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENL-SNKGIQVHDDDKRFRKKQKKRSKE 221
               G  K   L G+ D + +    +K  K  +N  S K + + ++  R  KK+K R  +
Sbjct: 325 NKDNGNKKKDKLTGTVDPDTKNKSTKKKLKKDDNKPSEKALALEENVNRTEKKKKNRKNK 384

Query: 222 KQGELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASK-FNSVDGLVTSSGKKKKSK 280
           +Q E DIID+ E +F+E+F+     N    G+  + ++  K    V  + T   K K +K
Sbjct: 385 EQSEFDIIDDAEASFAEIFNIKDQENLNHGGEMKLQDQVPKDLKLVSSIETLPVKHKSAK 444

Query: 281 NRGMGLTVQLSQEP--EVGLGGPSTWGD 306
                  V+    P  E+G+GGPSTWGD
Sbjct: 445 MHN----VESLSSPGTEIGMGGPSTWGD 468

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543614|ref|XP_003540255.1| PREDICTED: protein phosphatase 1 regulatory subunit 7-like [Glycine max]

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/267 (34%), Positives = 136/267 (50%), Gaps = 33/267 (12%)

Query: 49  LQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVR 108
           LQGNPVA  DK+ +KVK  LP L IFNARP+D+ T+N+K +IVD  +D S +  D     
Sbjct: 230 LQGNPVATVDKVTRKVKKALPKLQIFNARPVDKDTENKKGSIVDGTHDFSVDQAD----- 284

Query: 109 MGKKRGGTRETNDKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAIDDAKNSGGVVP-- 166
                      +D+  +  ++ + +D  +G+K  KK K          DA N    V   
Sbjct: 285 ---------HPSDQNEDNHLE-AAADLDSGRKSTKKRKRTA-------DASNKEDRVADE 327

Query: 167 ---GQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHDD-DKRFRKKQKKRSKEK 222
              G  KD     +   EM+    +K  K  +   +KG  + ++  K  +K +KK   E+
Sbjct: 328 EKKGHKKDRTDRKNDGPEMDNKSTKKKAKKDDKPLDKGFALEENVSKVEKKLKKKHKNEE 387

Query: 223 QGELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASKFNSVDG-LVTSSGKKKKSKN 281
           Q ELD+ID+ E +F+ELF  N A N     +    ++  K   + G  VTS  K+K +K 
Sbjct: 388 QSELDVIDDAEASFAELFKINDAENLNLVDEMRARDKVPKDVKLAGDTVTSFAKRKNAKM 447

Query: 282 RGM-GLTVQLSQEPEVGLGGPSTWGDE 307
           + +  L+   + E EVG+GGPSTWGDE
Sbjct: 448 QNIESLS---APEAEVGMGGPSTWGDE 471

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511123|gb|AFK43623.1| unknown [Lotus japonicus]

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 134/279 (48%), Gaps = 40/279 (14%)

Query: 41  FFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNN 100
             NL NLNLQGNPVA  DK+ +K+K  LP L IFNARP+ +  KNEK + VD  +D S  
Sbjct: 222 LTNLKNLNLQGNPVASSDKITRKIKKALPKLQIFNARPVHKDAKNEKGDTVDGDHDFSAA 281

Query: 101 SDDTIKVRMGKK-RGGTRETNDKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAIDDAK 159
                  R+G+  R  T+E   K  NE+     +D              + +L      K
Sbjct: 282 D------RVGQNLRDSTKEK--KSQNEDDHPKTAD--------------DPDLGRKSSKK 319

Query: 160 NSGGVV----PGQNKDA------NLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHDDDK 209
               VV     G NKD+      +L G+ D +  K   +K     +   +KG+ + +   
Sbjct: 320 RKKTVVDEEDTGHNKDSADGKKDSLIGAVDPDTPKKSSKKKLTKDDKPLDKGLALEEYVN 379

Query: 210 RFRKKQKKRSKEKQ-GELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASKFNSVDG 268
              KK+KK+ K ++  ELD+ID+ ET+F ELF+   A N    G+     +      VD 
Sbjct: 380 MIEKKRKKKQKNEEPSELDVIDDAETSFVELFNIKGAENLNHGGE----KKPKDVKLVDS 435

Query: 269 LVTSSGKKKKSKNRGMGLTVQLSQEPEVGLGGPSTWGDE 307
            +TS  K K +K   +G     S   E+G+GG STWGDE
Sbjct: 436 TITSFSKHKSAKTPNLGSLS--SPVTEIGMGGASTWGDE 472

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2176397	452	AT5G22320 [Arabidopsis thalian	0.114	0.077	0.685	1.5e-18

TAIR|locus:2176397 AT5G22320 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
 Identities = 24/35 (68%), Positives = 33/35 (94%)

Query:     1 MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTL 35
             M++++S+V+LRALILNDNEI SICKLD +K+LN+L
Sbjct:   100 MNEISSLVNLRALILNDNEISSICKLDLLKDLNSL 134

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00660138	hypothetical protein (475 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.29890001	hypothetical protein (424 aa)			•						0.460
	gw1.298.28.1	hypothetical protein (642 aa)			•						0.456
	fgenesh4_pg.C_LG_XVI001182	hypothetical protein (328 aa)			•						0.443
	eugene3.01970033	annotation not avaliable (438 aa)			•						0.442
	eugene3.00150629	hypothetical protein (516 aa)			•						0.427
	eugene3.00410224	hypothetical protein (478 aa)			•						0.425
	gw1.V.1354.1	hypothetical protein (414 aa)			•						0.423
	fgenesh4_pg.C_scaffold_18994000001	hypothetical protein (346 aa)			•						0.418
	fgenesh4_pg.C_scaffold_184000015	hypothetical protein (444 aa)			•						0.418
	fgenesh4_pg.C_scaffold_166000065	hypothetical protein (415 aa)			•						0.418

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.72
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	99.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	98.79
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.54
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.42
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.29
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.17
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.01
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	97.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.41
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.41
PLN03150	623	hypothetical protein; Provisional	97.24
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.23
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.2
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.19
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.02
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.87
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.82
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	96.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.65
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.48
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.41
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.4
PLN03150	623	hypothetical protein; Provisional	96.31
KOG4237	498	consensus Extracellular matrix protein slit, conta	95.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	95.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.89
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.85
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.81
KOG0472	565	consensus Leucine-rich repeat protein [Function un	95.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.78
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	95.7
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.68
PLN03210	1153	Resistant to P. syringae 6; Provisional	95.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.54
KOG4237	498	consensus Extracellular matrix protein slit, conta	95.29
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.13
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.06
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	94.98
smart00446	26	LRRcap occurring C-terminal to leucine-rich repeat	94.82
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.15
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.14
smart00370	26	LRR Leucine-rich repeats, outliers.	94.14
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	94.09
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.56
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.42
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	93.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.68
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.61
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.52
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.3
KOG0472	565	consensus Leucine-rich repeat protein [Function un	91.75
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	89.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	88.69
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	86.87
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	86.7
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	86.46
PRK15386	426	type III secretion protein GogB; Provisional	86.45
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.02
KOG1947	482	consensus Leucine rich repeat proteins, some prote	85.98
KOG2123	388	consensus Uncharacterized conserved protein [Funct	85.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	84.8
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	82.91
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	81.2
smart00370	26	LRR Leucine-rich repeats, outliers.	81.2
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.03

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.72  E-value=4.3e-18  Score=149.19  Aligned_cols=90  Identities=24%  Similarity=0.412  Sum_probs=48.3

Q ss_pred             Ccccc-ccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------------------------------CCC
Q 021827            1 MDDVT-SVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------------------------------YFF   42 (307)
Q Consensus         1 IDeL~-~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------------------------------~L~   42 (307)
                      |+++. .|.+|+.|+||+|+|++|++|+.|+.|++|+|++                                     .|+
T Consensus        34 Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~  113 (175)
T PF14580_consen   34 IENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLP  113 (175)
T ss_dssp             --S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-T
T ss_pred             ccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCC
Confidence            34555 4566777777777777777777777777777664                                     789


Q ss_pred             CCceEEccCCCccCccchHHHHHHhCCCCceecCcccChhhhhhhccc
Q 021827           43 NLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNI   90 (307)
Q Consensus        43 nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLDarpV~e~tRe~a~~r   90 (307)
                      +|++|+|.||||++.+.||.+|+..||+|++||+.+|.+++|.+|...
T Consensus       114 ~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~  161 (175)
T PF14580_consen  114 KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEERQEAEKL  161 (175)
T ss_dssp             T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B-------
T ss_pred             CcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHhcccccc
Confidence            999999999999999999999999999999999999999999998543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=99.29  E-value=8.7e-13  Score=121.43  Aligned_cols=89  Identities=29%  Similarity=0.418  Sum_probs=79.8

Q ss_pred             CccccccccCCeeeccCcccccccC-CCC-CCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHH
Q 021827            1 MDDVTSVVSLRALILNDNEIVSICK-LDQ-MKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVK   65 (307)
Q Consensus         1 IDeL~~L~nL~aL~LS~N~IssIeg-Le~-L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~   65 (307)
                      ++++..+..|.+|.|++|+|++|.+ |++ +++|.+|.|++             .||.|++|.|-|||++...+||.||+
T Consensus        57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl  136 (233)
T KOG1644|consen   57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL  136 (233)
T ss_pred             cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence            3567778889999999999999988 555 56799999987             88999999999999999999999999


Q ss_pred             HhCCCCceecCcccChhhhhhhcc
Q 021827           66 TLLPNLCIFNARPIDRITKNEKDN   89 (307)
Q Consensus        66 a~LP~L~yLDarpV~e~tRe~a~~   89 (307)
                      ..||+|+.|||..|...+|++|-.
T Consensus       137 ~klp~l~~LDF~kVt~~ER~~A~~  160 (233)
T KOG1644|consen  137 YKLPSLRTLDFQKVTRKEREEAEV  160 (233)
T ss_pred             EecCcceEeehhhhhHHHHHHHHH
Confidence            999999999999999999999943

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=6.2e-10  Score=107.50  Aligned_cols=83  Identities=27%  Similarity=0.341  Sum_probs=77.8

Q ss_pred             cccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCc--cchHHHHHHhCC
Q 021827            5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEY--DKLAKKVKTLLP   69 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~--e~YrrKI~a~LP   69 (307)
                      ..+..|+.|.||=|.|+++.-|..|++|..|+|..             .||+|++|-|..||||-.  .+||+.|+..||
T Consensus        38 ~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            56788999999999999999999999999999985             889999999999999864  899999999999


Q ss_pred             CCceecCcccChhhhhhh
Q 021827           70 NLCIFNARPIDRITKNEK   87 (307)
Q Consensus        70 ~L~yLDarpV~e~tRe~a   87 (307)
                      +|+.||..+|.+++=+.|
T Consensus       118 nLkKLDnv~VteeEle~A  135 (388)
T KOG2123|consen  118 NLKKLDNVPVTEEELEEA  135 (388)
T ss_pred             cchhccCccccHHHHHHH
Confidence            999999999999998888

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.54  E-value=5.3e-08  Score=85.85  Aligned_cols=70  Identities=27%  Similarity=0.386  Sum_probs=23.8

Q ss_pred             ccccccCCeeeccCcccccccCCC-CCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            4 VTSVVSLRALILNDNEIVSICKLD-QMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe-~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      +.++..+++|+|.+|+|+.|++|+ .|.+|++|+||+          .|++|++|+|.+|.|+....   .+...||+|+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~---~l~~~lp~L~   91 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE---GLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH---HHHHH-TT--
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc---chHHhCCcCC
Confidence            344556999999999999999999 699999999997          77999999999999998754   3445789999


Q ss_pred             eecC
Q 021827           73 IFNA   76 (307)
Q Consensus        73 yLDa   76 (307)
                      .|.-
T Consensus        92 ~L~L   95 (175)
T PF14580_consen   92 ELYL   95 (175)
T ss_dssp             EEE-
T ss_pred             EEEC
Confidence            8873

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.42  E-value=2.3e-07  Score=66.45  Aligned_cols=47  Identities=28%  Similarity=0.435  Sum_probs=43.2

Q ss_pred             ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCc
Q 021827            8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPV   54 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPI   54 (307)
                      ++|+.|+|++|+|+.|+.  +..|++|++|+|++            .|++|++|+|.+|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            479999999999999995  89999999999996            789999999999986

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.29  E-value=1.7e-07  Score=92.00  Aligned_cols=62  Identities=31%  Similarity=0.432  Sum_probs=53.4

Q ss_pred             cccCCeeeccCcccccccCCCCCCCCCeEeccc-----------------------------------------------
Q 021827            7 VVSLRALILNDNEIVSICKLDQMKELNTLGMDS-----------------------------------------------   39 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-----------------------------------------------   39 (307)
                      ++.++.|+||+|+|..|.+|..|.+|+.||||.                                               
T Consensus       306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~  385 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQ  385 (490)
T ss_pred             ccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccc
Confidence            366788888888888888888888888888873                                               


Q ss_pred             -----------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827           40 -----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL   68 (307)
Q Consensus        40 -----------~L~nLrtLnLeGNPIak~e~YrrKI~a~L   68 (307)
                                 .||+|.+|.|.+||++...+||-+|++.+
T Consensus       386 Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~F  425 (490)
T KOG1259|consen  386 IEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARF  425 (490)
T ss_pred             hhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHH
Confidence                       88999999999999999999999999865

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.17  E-value=5.9e-07  Score=85.96  Aligned_cols=79  Identities=28%  Similarity=0.325  Sum_probs=64.9

Q ss_pred             cccccccCCeeeccCcccccccC-CCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827            3 DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL   71 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L   71 (307)
                      .|..+++|.+|+|.+|+|+.|++ ++.|++|.+|+||.          .|+.|+.|+|.||+|+....|......-++.|
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL  169 (414)
T ss_pred             ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccC
Confidence            38899999999999999999999 99999999999997          77889999999999999999876444444554


Q ss_pred             ceecCcccCh
Q 021827           72 CIFNARPIDR   81 (307)
Q Consensus        72 ~yLDarpV~e   81 (307)
                      .|.....+..
T Consensus       170 ~~n~i~~ie~  179 (414)
T KOG0531|consen  170 SYNRIVDIEN  179 (414)
T ss_pred             Ccchhhhhhh
Confidence            4444444444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.16  E-value=8.7e-07  Score=83.61  Aligned_cols=83  Identities=25%  Similarity=0.294  Sum_probs=61.8

Q ss_pred             cccccCCeeeccCcccccccC----CCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHh
Q 021827            5 TSVVSLRALILNDNEIVSICK----LDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTL   67 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIeg----Le~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~   67 (307)
                      -.|++|++|.||+|...-..+    ...+++|++|.||.             .|+||.+|.|..|++....+||.+|..+
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l  141 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL  141 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence            345666777777773332222    33446667777664             6678888888888888999999999999


Q ss_pred             CCCCceecCcccChhhhhhh
Q 021827           68 LPNLCIFNARPIDRITKNEK   87 (307)
Q Consensus        68 LP~L~yLDarpV~e~tRe~a   87 (307)
                      ||+|+|||..-|...+...+
T Consensus       142 l~~L~~LD~~dv~~~Ea~~~  161 (260)
T KOG2739|consen  142 LPSLKYLDGCDVDGEEAPEA  161 (260)
T ss_pred             hhhhccccccccCCcccccc
Confidence            99999999999988777666

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=2.1e-06  Score=60.10  Aligned_cols=40  Identities=33%  Similarity=0.528  Sum_probs=30.7

Q ss_pred             ccCCeeeccCcccccccC-CCCCCCCCeEecccCCCCCceEEccCCCccCccc
Q 021827            8 VSLRALILNDNEIVSICK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~~L~nLrtLnLeGNPIak~e~   59 (307)
                      ++|++|+|++|+|+.|+. |.+|            ++|++|+|.+|+|.+.+.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l------------~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNL------------PNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTC------------TTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCC------------CCCCEEEecCCCCCCCcC
Confidence            589999999999999997 6665            566788888888887654

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.01  E-value=4.2e-06  Score=77.79  Aligned_cols=66  Identities=26%  Similarity=0.384  Sum_probs=58.7

Q ss_pred             ccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCceec
Q 021827            8 VSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN   75 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLD   75 (307)
                      .+..+++|++|.|..+.+|+.+.+|.||.|++            .+++|.+|+|.+|-|+...+.  --.+.||+|+||-
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl--~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL--DPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc--chhccCCccceee
Confidence            46889999999999999999999999999997            779999999999999988763  4457889998875

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=97.88  E-value=6.2e-06  Score=84.76  Aligned_cols=80  Identities=20%  Similarity=0.357  Sum_probs=67.7

Q ss_pred             cccccCCeeeccCcccccccCCCCC----CCCCeEeccc--------------CCCCCceEEccCCCccCc----cchHH
Q 021827            5 TSVVSLRALILNDNEIVSICKLDQM----KELNTLGMDS--------------YFFNLNNLNLQGNPVAEY----DKLAK   62 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegLe~L----~nL~TLdLS~--------------~L~nLrtLnLeGNPIak~----e~Yrr   62 (307)
                      .+...+..|.|++|+|-.|+.+..|    ++|.+|+||+              ....|+.|-|.|||||..    ..|.+
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence            3556788899999999999997765    6899999997              446689999999999875    66777


Q ss_pred             HHHHhCCCCceecCcccChhhh
Q 021827           63 KVKTLLPNLCIFNARPIDRITK   84 (307)
Q Consensus        63 KI~a~LP~L~yLDarpV~e~tR   84 (307)
                      .|+..+|+|..||+.-|.....
T Consensus       295 ~i~~~FPKL~~LDG~ev~~~~~  316 (585)
T KOG3763|consen  295 AIRELFPKLLRLDGVEVQPEVI  316 (585)
T ss_pred             HHHHhcchheeecCcccCcccc
Confidence            9999999999999998877553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.68  E-value=1.1e-05  Score=77.27  Aligned_cols=60  Identities=23%  Similarity=0.356  Sum_probs=53.9

Q ss_pred             Ccc-ccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccch
Q 021827            1 MDD-VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKL   60 (307)
Q Consensus         1 IDe-L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~Y   60 (307)
                      |.+ +.+|++|+.|+||+|.|++|++|..|+.|..|+|++          .|++|+.|+|.+|.|...+.+
T Consensus       110 i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~  180 (414)
T KOG0531|consen  110 IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIEND  180 (414)
T ss_pred             cccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhh
Confidence            455 778999999999999999999999999999999997          578999999999999887774

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.41  E-value=9e-05  Score=77.66  Aligned_cols=74  Identities=20%  Similarity=0.379  Sum_probs=64.3

Q ss_pred             cccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccch-HHHHH--HhC
Q 021827            5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKL-AKKVK--TLL   68 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~Y-rrKI~--a~L   68 (307)
                      .+++||..|++|+-+|+.|.|++.|+||++|.+-+             .|++|++|+++.......... ++|+-  ..|
T Consensus       170 ~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L  249 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL  249 (699)
T ss_pred             hccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence            57899999999999999999999999999999987             889999999999998776632 33433  579


Q ss_pred             CCCceecCcc
Q 021827           69 PNLCIFNARP   78 (307)
Q Consensus        69 P~L~yLDarp   78 (307)
                      |.|++||+..
T Consensus       250 peLrfLDcSg  259 (699)
T KOG3665|consen  250 PELRFLDCSG  259 (699)
T ss_pred             ccccEEecCC
Confidence            9999999873

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.41  E-value=1.6e-05  Score=84.86  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=63.5

Q ss_pred             CCeeeccCcccccccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHh-----CCCC
Q 021827           10 LRALILNDNEIVSICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTL-----LPNL   71 (307)
Q Consensus        10 L~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~-----LP~L   71 (307)
                      |..|+|++|.++++-|+++|.+|..||||.             .|..|+.|||+|||++-.+.||.-+..+     +|.=
T Consensus       234 L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~  313 (1096)
T KOG1859|consen  234 LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVK  313 (1096)
T ss_pred             heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcc
Confidence            777888888888999999999999999995             5678999999999999999999877754     4566


Q ss_pred             ceecCcccChhhhhh
Q 021827           72 CIFNARPIDRITKNE   86 (307)
Q Consensus        72 ~yLDarpV~e~tRe~   86 (307)
                      -.||++-+.-.+.-.
T Consensus       314 f~LDgk~l~~~efwk  328 (1096)
T KOG1859|consen  314 FKLDGKALGGREFWK  328 (1096)
T ss_pred             eEecceeccchhhhh
Confidence            678888776655433

>PLN03150 hypothetical protein; Provisional

Probab=97.24  E-value=0.00039  Score=71.19  Aligned_cols=52  Identities=27%  Similarity=0.432  Sum_probs=39.0

Q ss_pred             ccccccCCeeeccCcccc-cccC-CCCCCCCCeEeccc------------CCCCCceEEccCCCcc
Q 021827            4 VTSVVSLRALILNDNEIV-SICK-LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVA   55 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~Is-sIeg-Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIa   55 (307)
                      |..|.+|+.|+|++|.|+ .|+. +..|++|++|+|++            .|++|+.|+|.+|.+.
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence            456777888888888886 5553 77778888888875            6677888888888776

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.23  E-value=0.00051  Score=71.39  Aligned_cols=15  Identities=40%  Similarity=0.609  Sum_probs=7.3

Q ss_pred             CCCCceEEccCCCcc
Q 021827           41 FFNLNNLNLQGNPVA   55 (307)
Q Consensus        41 L~nLrtLnLeGNPIa   55 (307)
                      |++|++|+|.+|.+.
T Consensus       163 l~~L~~L~L~~n~l~  177 (968)
T PLN00113        163 FSSLKVLDLGGNVLV  177 (968)
T ss_pred             CCCCCEEECccCccc
Confidence            344555555555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.20  E-value=0.00043  Score=71.90  Aligned_cols=70  Identities=24%  Similarity=0.250  Sum_probs=45.8

Q ss_pred             ccccccCCeeeccCccccc-cc-CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVS-IC-KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~Iss-Ie-gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|.+|+.|+|++|+|+. ++ .+..|++|++|+|++            .|++|++|+|.+|++...-.   ..+..++
T Consensus       495 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~  571 (968)
T PLN00113        495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP---KNLGNVE  571 (968)
T ss_pred             hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC---hhHhcCc
Confidence            4556777777777777763 32 366777778888775            56778888888888764322   2334466


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      .|++||-
T Consensus       572 ~L~~l~l  578 (968)
T PLN00113        572 SLVQVNI  578 (968)
T ss_pred             ccCEEec
Confidence            6766663

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.19  E-value=0.00034  Score=62.03  Aligned_cols=70  Identities=21%  Similarity=0.316  Sum_probs=34.8

Q ss_pred             ccCCeeeccCcccc-----ccc-CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCcc-chHHHH
Q 021827            8 VSLRALILNDNEIV-----SIC-KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYD-KLAKKV   64 (307)
Q Consensus         8 ~nL~aL~LS~N~Is-----sIe-gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e-~YrrKI   64 (307)
                      .+|+.|+|++|.|+     .+. .+..+.+|++|+|+.                .+++|+.|+|.+|++.... .+....
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            55666666666655     111 244445556666553                2235666666666655321 222233


Q ss_pred             HHhCCCCceecCc
Q 021827           65 KTLLPNLCIFNAR   77 (307)
Q Consensus        65 ~a~LP~L~yLDar   77 (307)
                      ...+|+|++||-.
T Consensus       217 ~~~~~~L~~L~ls  229 (319)
T cd00116         217 LASLKSLEVLNLG  229 (319)
T ss_pred             hcccCCCCEEecC
Confidence            3344556665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.02  E-value=0.00058  Score=60.55  Aligned_cols=72  Identities=21%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             cccccCCeeeccCccccc-----c-cCCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccch--
Q 021827            5 TSVVSLRALILNDNEIVS-----I-CKLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDKL--   60 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~Iss-----I-egLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~Y--   60 (307)
                      ..+..|+.|+|++|.|+.     + ..+..+++|+.|+|++                .+++|+.|+|.+|++....-+  
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            445678888888888772     2 2345566888888875                567788888888887753221  


Q ss_pred             HHHHHHhCCCCceecC
Q 021827           61 AKKVKTLLPNLCIFNA   76 (307)
Q Consensus        61 rrKI~a~LP~L~yLDa   76 (307)
                      ...+....++|++|+.
T Consensus       242 ~~~~~~~~~~L~~L~l  257 (319)
T cd00116         242 ASALLSPNISLLTLSL  257 (319)
T ss_pred             HHHHhccCCCceEEEc
Confidence            1111112367777764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.95  E-value=0.00014  Score=76.45  Aligned_cols=66  Identities=24%  Similarity=0.312  Sum_probs=36.9

Q ss_pred             cccCCeeeccCcccccccC--CCCCCCCCeEeccc---------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            7 VVSLRALILNDNEIVSICK--LDQMKELNTLGMDS---------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~---------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      |..|++|+|++|.|..|..  +..|.+|.+|+|++               .|+.|+.|.|.||.+-..+.   +-+.-||
T Consensus       340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k---rAfsgl~  416 (873)
T KOG4194|consen  340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK---RAFSGLE  416 (873)
T ss_pred             HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch---hhhccCc
Confidence            3444455555555554443  44455555555553               55666666666666666554   4455566


Q ss_pred             CCceec
Q 021827           70 NLCIFN   75 (307)
Q Consensus        70 ~L~yLD   75 (307)
                      .|..||
T Consensus       417 ~LE~Ld  422 (873)
T KOG4194|consen  417 ALEHLD  422 (873)
T ss_pred             ccceec
Confidence            666666

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.87  E-value=0.00022  Score=75.80  Aligned_cols=77  Identities=18%  Similarity=0.239  Sum_probs=56.2

Q ss_pred             cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +|+.-.|+-.|+||+|+|.+|++  +-+|+.|-.||||+           +|.+|++|.|++||+.-      +-+..||
T Consensus       121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h------fQLrQLP  194 (1255)
T KOG0444|consen  121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH------FQLRQLP  194 (1255)
T ss_pred             hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH------HHHhcCc
Confidence            34455667778888888888888  67788888888887           88999999999999853      3345677


Q ss_pred             CCceecCcccChhhhh
Q 021827           70 NLCIFNARPIDRITKN   85 (307)
Q Consensus        70 ~L~yLDarpV~e~tRe   85 (307)
                      .++.|..--.+...|.
T Consensus       195 smtsL~vLhms~TqRT  210 (1255)
T KOG0444|consen  195 SMTSLSVLHMSNTQRT  210 (1255)
T ss_pred             cchhhhhhhcccccch
Confidence            7777664444444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=0.00057  Score=67.47  Aligned_cols=48  Identities=17%  Similarity=0.259  Sum_probs=37.8

Q ss_pred             CCCCCceEEccCCCccCc-c-chHHHH-HHhCCCCceecCcccChhhhhhh
Q 021827           40 YFFNLNNLNLQGNPVAEY-D-KLAKKV-KTLLPNLCIFNARPIDRITKNEK   87 (307)
Q Consensus        40 ~L~nLrtLnLeGNPIak~-e-~YrrKI-~a~LP~L~yLDarpV~e~tRe~a   87 (307)
                      +|+.|+.|.+..||+.+. . .-|+++ ++.||+++.|++.-|...+|+.-
T Consensus       247 ~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dS  297 (418)
T KOG2982|consen  247 GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDS  297 (418)
T ss_pred             CCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhh
Confidence            889999999999999764 1 224444 48999999999999988877654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=96.81  E-value=0.00074  Score=43.71  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             cccCCeeeccCcccccccCCCC
Q 021827            7 VVSLRALILNDNEIVSICKLDQ   28 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIegLe~   28 (307)
                      |++|+.|+|++|.|+.|+||+.
T Consensus         1 L~~L~~L~L~~NkI~~IEnL~~   22 (26)
T smart00365        1 LTNLEELDLSQNKIKKIENLDE   22 (26)
T ss_pred             CCccCEEECCCCccceecCccc
Confidence            6899999999999999999984

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.79  E-value=0.00056  Score=72.07  Aligned_cols=73  Identities=23%  Similarity=0.311  Sum_probs=55.7

Q ss_pred             cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827            3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL   68 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L   68 (307)
                      +|..|..|+.|+||-|.|+.|+.  ++.=.+|..|+|++            .|.+|-+|-|..|-++..+.   ++.+.|
T Consensus       144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~---r~Fk~L  220 (873)
T KOG4194|consen  144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ---RSFKRL  220 (873)
T ss_pred             HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH---HHhhhc
Confidence            45566777777777777777776  66666777777775            56778888888888888776   788899


Q ss_pred             CCCceecCcc
Q 021827           69 PNLCIFNARP   78 (307)
Q Consensus        69 P~L~yLDarp   78 (307)
                      |+|+.||-.+
T Consensus       221 ~~L~~LdLnr  230 (873)
T KOG4194|consen  221 PKLESLDLNR  230 (873)
T ss_pred             chhhhhhccc
Confidence            9999998653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.65  E-value=0.0014  Score=46.86  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=33.0

Q ss_pred             cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc
Q 021827            3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS   39 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~   39 (307)
                      -+..|++|+.|+|++|.|+.|+.  +..|++|++|+|++
T Consensus        20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen   20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred             HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence            35678999999999999999986  89999999999985

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.00057  Score=69.49  Aligned_cols=46  Identities=22%  Similarity=0.192  Sum_probs=24.7

Q ss_pred             CCCceEEccCCCccCccchHH-HHHHhCCCCceecCcccChhhhhhh
Q 021827           42 FNLNNLNLQGNPVAEYDKLAK-KVKTLLPNLCIFNARPIDRITKNEK   87 (307)
Q Consensus        42 ~nLrtLnLeGNPIak~e~Yrr-KI~a~LP~L~yLDarpV~e~tRe~a   87 (307)
                      ++|+.|+.-+||+...++-.+ -|++.+|+|..|+.--|.+.+|-.|
T Consensus       326 ~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~A  372 (505)
T KOG3207|consen  326 ENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRDA  372 (505)
T ss_pred             chhhhhhcccccccccccceeEEeeeehhhhhhhcccccChHHhhhh
Confidence            444444444444444333222 2346667777777777777776655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.41  E-value=0.0033  Score=67.24  Aligned_cols=29  Identities=31%  Similarity=0.493  Sum_probs=14.5

Q ss_pred             cCCeeeccCcccccccCCCCCCCCCeEeccc
Q 021827            9 SLRALILNDNEIVSICKLDQMKELNTLGMDS   39 (307)
Q Consensus         9 nL~aL~LS~N~IssIegLe~L~nL~TLdLS~   39 (307)
                      +|+.|+|++|+|+.|+.+  +++|++|+|++
T Consensus       223 ~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~  251 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL--PPELRTLEVSG  251 (788)
T ss_pred             CCCEEEccCCcCCCCCCC--CCCCcEEEecC
Confidence            345555555555555433  34455555553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.41  E-value=0.00057  Score=74.30  Aligned_cols=36  Identities=25%  Similarity=0.388  Sum_probs=28.2

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS   39 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~   39 (307)
                      |.+...|+.|+|++|+|.+++-  +..|..|+.|+||.
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG  416 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG  416 (1081)
T ss_pred             hccccceeeeeecccccccCCHHHHhchHHhHHHhccc
Confidence            3456778888888888888776  77778888888885

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.40  E-value=0.0017  Score=60.77  Aligned_cols=53  Identities=30%  Similarity=0.408  Sum_probs=28.1

Q ss_pred             cccCCeeeccCcccccccCCCCCC--CCCeEeccc-----------CCCCCceEEccCCCccCccc
Q 021827            7 VVSLRALILNDNEIVSICKLDQMK--ELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIegLe~L~--nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~   59 (307)
                      ++.|..|+|.+|.|+.|..+..+.  +|+.|++++           .+++|+.|+|..|+++..+.
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~  180 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPK  180 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhh
Confidence            344555555555555555544443  555555554           44555555555555555544

>PLN03150 hypothetical protein; Provisional

Probab=96.31  E-value=0.005  Score=63.22  Aligned_cols=66  Identities=18%  Similarity=0.236  Sum_probs=52.6

Q ss_pred             cCCeeeccCcccc-cccC-CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCcee
Q 021827            9 SLRALILNDNEIV-SICK-LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF   74 (307)
Q Consensus         9 nL~aL~LS~N~Is-sIeg-Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yL   74 (307)
                      .+..|+|++|.|+ .|+. +..|++|+.|+|++            .|++|++|+|.+|.+.....   .....|++|++|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP---~~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP---ESLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc---hHHhcCCCCCEE
Confidence            3789999999997 3333 77899999999996            77899999999999985422   234578999999


Q ss_pred             cCc
Q 021827           75 NAR   77 (307)
Q Consensus        75 Dar   77 (307)
                      |..
T Consensus       496 ~Ls  498 (623)
T PLN03150        496 NLN  498 (623)
T ss_pred             ECc
Confidence            853

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=95.92  E-value=0.003  Score=64.04  Aligned_cols=51  Identities=27%  Similarity=0.373  Sum_probs=32.0

Q ss_pred             cccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCcc
Q 021827            5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVA   55 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIa   55 (307)
                      ..|++|+.|+|++|.|+.|+.  ++.+..|+.|+|..            .+..|++|+|.||.|+
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence            457777777777777777765  66666666666653            4455555555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.91  E-value=0.0023  Score=65.17  Aligned_cols=71  Identities=20%  Similarity=0.236  Sum_probs=49.7

Q ss_pred             ccccccCCeeeccCcccccccC----CCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHH
Q 021827            4 VTSVVSLRALILNDNEIVSICK----LDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKT   66 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg----Le~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a   66 (307)
                      +..|++++.|+||.|-|..+.-    +++|++|+.|.||+             .++.|++|.|.++-++..+  ..++.+
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~--V~~~~~  219 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKD--VQWILL  219 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHH--HHHHHH
Confidence            3568888888888888874433    67888888888885             4566777777777776332  356667


Q ss_pred             hCCCCceecC
Q 021827           67 LLPNLCIFNA   76 (307)
Q Consensus        67 ~LP~L~yLDa   76 (307)
                      .+|+|..|+.
T Consensus       220 ~fPsl~~L~L  229 (505)
T KOG3207|consen  220 TFPSLEVLYL  229 (505)
T ss_pred             hCCcHHHhhh
Confidence            7777765543

>PLN03210 Resistant to P

Probab=95.89  E-value=0.01  Score=64.78  Aligned_cols=50  Identities=26%  Similarity=0.416  Sum_probs=29.2

Q ss_pred             ccccccCCeeeccCc-ccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCC
Q 021827            4 VTSVVSLRALILNDN-EIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNP   53 (307)
Q Consensus         4 L~~L~nL~aL~LS~N-~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNP   53 (307)
                      +..|++|+.|+|++| .|+.|+.+..+++|++|+|++            .|++|+.|+|.+|+
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence            345566666666553 355666666666666666653            44566666666654

syringae 6; Provisional

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.89  E-value=0.004  Score=43.59  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=22.3

Q ss_pred             ccccccCCeeeccCcccccccCCC
Q 021827            4 VTSVVSLRALILNDNEIVSICKLD   27 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe   27 (307)
                      |.+|++|+.|+|++|+|++|+.|+
T Consensus        20 l~~l~~L~~L~l~~N~i~~i~~l~   43 (44)
T PF12799_consen   20 LSNLPNLETLNLSNNPISDISPLS   43 (44)
T ss_dssp             GTTCTTSSEEEETSSCCSBEGGGT
T ss_pred             HhCCCCCCEEEecCCCCCCCcCCC
Confidence            789999999999999999998775

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.85  E-value=0.0019  Score=60.19  Aligned_cols=54  Identities=24%  Similarity=0.354  Sum_probs=34.2

Q ss_pred             ccccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCc
Q 021827            4 VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~   57 (307)
                      |..|.||+.|+|++|||+.++- ++.|++|.+|.++-           .||-|..|.|..|.+.+.
T Consensus        52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~  117 (264)
T KOG0617|consen   52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN  117 (264)
T ss_pred             HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccc
Confidence            4456666666666666666654 66666666666662           566666666666666543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.81  E-value=0.0044  Score=58.00  Aligned_cols=51  Identities=35%  Similarity=0.559  Sum_probs=40.4

Q ss_pred             cCCeeeccCcccccc-cCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccc
Q 021827            9 SLRALILNDNEIVSI-CKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus         9 nL~aL~LS~N~IssI-egLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~   59 (307)
                      +|+.|++++|+|+.| ..+..|++|+.|+|++           .+++|+.|+|.+|-+...+.
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~  203 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP  203 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCch
Confidence            788888888888888 4788888888888885           45777778888888877665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.78  E-value=0.005  Score=62.90  Aligned_cols=31  Identities=39%  Similarity=0.700  Sum_probs=23.5

Q ss_pred             CCCCCCCCeEeccc-----------CCCCCceEEccCCCccC
Q 021827           26 LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAE   56 (307)
Q Consensus        26 Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak   56 (307)
                      |-+|.+|.||||.+           .|.||++|-|.||||..
T Consensus       501 l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  501 LKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             hhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCC
Confidence            55566666666665           78889999999999983

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.78  E-value=0.0081  Score=64.33  Aligned_cols=47  Identities=28%  Similarity=0.428  Sum_probs=28.5

Q ss_pred             cCCeeeccCcccccccCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCc
Q 021827            9 SLRALILNDNEIVSICKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         9 nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~   57 (307)
                      +|+.|+|++|+|++|+.+  +.+|+.|+|++           .|++|..|+|+|||++..
T Consensus       403 ~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        403 ELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             CCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence            455555555555555543  23556666664           456777788888887754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=95.70  E-value=0.0045  Score=67.62  Aligned_cols=53  Identities=28%  Similarity=0.412  Sum_probs=46.3

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CC--CCCceEEccCCCcc
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YF--FNLNNLNLQGNPVA   55 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L--~nLrtLnLeGNPIa   55 (307)
                      .|..|..|++|+...|+|.+++.+.+|++|.+||||.          .+  ++|+.|+|.||+=-
T Consensus       425 tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  425 TVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             HHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            4567788999999999999999999999999999996          22  79999999999953

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.68  E-value=0.0017  Score=69.33  Aligned_cols=57  Identities=25%  Similarity=0.394  Sum_probs=34.8

Q ss_pred             cccccccCCeeeccCcccccccC-CC-------------------------CCCCCCeEeccc-----------CCCCCc
Q 021827            3 DVTSVVSLRALILNDNEIVSICK-LD-------------------------QMKELNTLGMDS-----------YFFNLN   45 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg-Le-------------------------~L~nL~TLdLS~-----------~L~nLr   45 (307)
                      +|..|.+|+.|.++||++.+|.| |.                         .|..|++||||+           .-+|+-
T Consensus        50 EL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~i  129 (1255)
T KOG0444|consen   50 ELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSI  129 (1255)
T ss_pred             HHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcE
Confidence            45555566666666666555544 33                         344566666665           336677


Q ss_pred             eEEccCCCccCccc
Q 021827           46 NLNLQGNPVAEYDK   59 (307)
Q Consensus        46 tLnLeGNPIak~e~   59 (307)
                      +|||+.|.|-..++
T Consensus       130 VLNLS~N~IetIPn  143 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPN  143 (1255)
T ss_pred             EEEcccCccccCCc
Confidence            77888877777665

>PLN03210 Resistant to P

Probab=95.64  E-value=0.019  Score=62.73  Aligned_cols=68  Identities=16%  Similarity=0.251  Sum_probs=47.7

Q ss_pred             ccccccCCeeeccCc-ccccccCCCCCCCCCeEeccc---------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            4 VTSVVSLRALILNDN-EIVSICKLDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         4 L~~L~nL~aL~LS~N-~IssIegLe~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      +.+|++|+.|+|++| .++.|+..-.|+.|++|+|++         .+.+|+.|+|.+|.|...+.    -...||+|++
T Consensus       798 i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~----si~~l~~L~~  873 (1153)
T PLN03210        798 IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW----WIEKFSNLSF  873 (1153)
T ss_pred             hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChH----HHhcCCCCCE
Confidence            456777888888764 577776644677888888875         23578888888888876654    2345777777


Q ss_pred             ec
Q 021827           74 FN   75 (307)
Q Consensus        74 LD   75 (307)
                      |+
T Consensus       874 L~  875 (1153)
T PLN03210        874 LD  875 (1153)
T ss_pred             EE
Confidence            75

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.54  E-value=0.002  Score=60.05  Aligned_cols=73  Identities=16%  Similarity=0.237  Sum_probs=58.4

Q ss_pred             cccccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827            3 DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN   70 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~   70 (307)
                      +|-.+.+...|-||||.|+.++- +..|.+|+.|.|++           +|++|+.||+.-|-+.-.+.    =.-.+|-
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lpr----gfgs~p~  103 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPR----GFGSFPA  103 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcc----ccCCCch
Confidence            34456778899999999998865 99999999999997           88999999999887765543    1235788


Q ss_pred             CceecCccc
Q 021827           71 LCIFNARPI   79 (307)
Q Consensus        71 L~yLDarpV   79 (307)
                      |.+||-.+-
T Consensus       104 levldltyn  112 (264)
T KOG0617|consen  104 LEVLDLTYN  112 (264)
T ss_pred             hhhhhcccc
Confidence            888886553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=95.29  E-value=0.0065  Score=61.71  Aligned_cols=53  Identities=26%  Similarity=0.423  Sum_probs=47.1

Q ss_pred             cccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827            5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~   57 (307)
                      +.+..|++|+|..|+|..|++  +..|..|.||.|..            .+..|.+|+|-+||+.=+
T Consensus       295 e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  295 EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence            567789999999999999998  88999999999995            668899999999999643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.13  E-value=0.0091  Score=59.55  Aligned_cols=56  Identities=27%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             cccCCeeeccCcccccccC-CCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHH
Q 021827            7 VVSLRALILNDNEIVSICK-LDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAK   62 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~Yrr   62 (307)
                      -..|++|+||+|.|+.|.. .--+++++.|+||+          .|++|..|.|++|-+++.+.+-.
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~  349 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHL  349 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHh
Confidence            3568999999999999987 66688999999997          78999999999999998876543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.06  E-value=0.0038  Score=56.19  Aligned_cols=68  Identities=24%  Similarity=0.268  Sum_probs=49.7

Q ss_pred             ccccccCCeeeccCcccccccC-CCCC-CCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK-LDQM-KELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN   70 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg-Le~L-~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~   70 (307)
                      |.....|.+..|++|++.+++. |... +-++||.|++           .++.|+.|||..||+...+.    +.+-|-+
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~----vi~~L~~  124 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPR----VIAPLIK  124 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchH----HHHHHHh
Confidence            4555678889999999997775 4443 3678999987           77999999999999987654    2222444


Q ss_pred             Cceec
Q 021827           71 LCIFN   75 (307)
Q Consensus        71 L~yLD   75 (307)
                      |.+||
T Consensus       125 l~~Ld  129 (177)
T KOG4579|consen  125 LDMLD  129 (177)
T ss_pred             HHHhc
Confidence            45554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=94.98  E-value=0.026  Score=60.10  Aligned_cols=30  Identities=30%  Similarity=0.452  Sum_probs=14.4

Q ss_pred             cCCeeeccCcccccccCCCCCCCCCeEeccc
Q 021827            9 SLRALILNDNEIVSICKLDQMKELNTLGMDS   39 (307)
Q Consensus         9 nL~aL~LS~N~IssIegLe~L~nL~TLdLS~   39 (307)
                      +|+.|+|++|.|++|+. .-+.+|++|+|++
T Consensus       200 ~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~  229 (754)
T PRK15370        200 QITTLILDNNELKSLPE-NLQGNIKTLYANS  229 (754)
T ss_pred             CCcEEEecCCCCCcCCh-hhccCCCEEECCC
Confidence            35555555555555543 1123455555543

>smart00446 LRRcap occurring C-terminal to leucine-rich repeats

Probab=94.82  E-value=0.021  Score=37.42  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.4

Q ss_pred             cchHHHHHHhCCCCceecCccc
Q 021827           58 DKLAKKVKTLLPNLCIFNARPI   79 (307)
Q Consensus        58 e~YrrKI~a~LP~L~yLDarpV   79 (307)
                      +.||.+|+.+||+|++||....
T Consensus         2 ~~YR~~Vi~~LPqL~~LD~~~~   23 (26)
T smart00446        2 AHYREKVIRLLPQLRKLDXXXX   23 (26)
T ss_pred             ccHHHHHHHHCCccceeccccc
Confidence            5799999999999999997643

A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.15  E-value=0.0081  Score=64.92  Aligned_cols=36  Identities=19%  Similarity=0.355  Sum_probs=28.7

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCCeEeccc
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS   39 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~   39 (307)
                      |+-|.-|+.|+|++|+++...+|-.|++|.+||||.
T Consensus       183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsy  218 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSY  218 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhhHHHHhccccccccccc
Confidence            344566888888888888888888888888888884

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.14  E-value=0.031  Score=34.47  Aligned_cols=19  Identities=32%  Similarity=0.448  Sum_probs=15.1

Q ss_pred             cccCCeeeccCcccccccC
Q 021827            7 VVSLRALILNDNEIVSICK   25 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIeg   25 (307)
                      |++|+.|+|++|+|+.|+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCcCCH
Confidence            5778888888888888763

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.14  E-value=0.031  Score=34.47  Aligned_cols=19  Identities=32%  Similarity=0.448  Sum_probs=15.1

Q ss_pred             cccCCeeeccCcccccccC
Q 021827            7 VVSLRALILNDNEIVSICK   25 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIeg   25 (307)
                      |++|+.|+|++|+|+.|+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCcCCH
Confidence            5778888888888888763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=94.09  E-value=0.028  Score=59.78  Aligned_cols=49  Identities=20%  Similarity=0.297  Sum_probs=26.6

Q ss_pred             ccCCeeeccCcccccccC-CCCCCCCCeEeccc---------CCCCCceEEccCCCccCcc
Q 021827            8 VSLRALILNDNEIVSICK-LDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYD   58 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e   58 (307)
                      .+|+.|+|++|.|+.|+. +  .+.|+.|+|++         -.++|++|+|.+|.+...+
T Consensus       325 ~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP  383 (754)
T PRK15370        325 PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLP  383 (754)
T ss_pred             ccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCC
Confidence            356666666666665553 2  24556666654         1135556666666555443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.56  E-value=0.039  Score=32.14  Aligned_cols=17  Identities=35%  Similarity=0.483  Sum_probs=9.8

Q ss_pred             ccCCeeeccCccccccc
Q 021827            8 VSLRALILNDNEIVSIC   24 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIe   24 (307)
                      ++|+.|+|++|+|++|+
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            46788888888877663

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.42  E-value=0.047  Score=33.12  Aligned_cols=17  Identities=35%  Similarity=0.374  Sum_probs=14.4

Q ss_pred             cCCeeeccCcccccccC
Q 021827            9 SLRALILNDNEIVSICK   25 (307)
Q Consensus         9 nL~aL~LS~N~IssIeg   25 (307)
                      +|+.|+|++|+|+.|+.
T Consensus         1 ~L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             TESEEEETSSEESEEGT
T ss_pred             CccEEECCCCcCEeCCh
Confidence            58899999999998775

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=93.18  E-value=0.038  Score=55.11  Aligned_cols=71  Identities=27%  Similarity=0.256  Sum_probs=37.3

Q ss_pred             cccccCCeeeccCccccccc-----C-CCCCCCCCeEeccc-----------------CCCCCceEEccCCCccCccchH
Q 021827            5 TSVVSLRALILNDNEIVSIC-----K-LDQMKELNTLGMDS-----------------YFFNLNNLNLQGNPVAEYDKLA   61 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIe-----g-Le~L~nL~TLdLS~-----------------~L~nLrtLnLeGNPIak~e~Yr   61 (307)
                      ..|++|+.|+|++|-++.--     . |..+++|+.|+|+.                 .+|+|.+|.|.||-|.......
T Consensus       210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~  289 (382)
T KOG1909|consen  210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA  289 (382)
T ss_pred             HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence            44556666666666655221     1 44555555555553                 4566666666666665544332


Q ss_pred             HHHH-HhCCCCceec
Q 021827           62 KKVK-TLLPNLCIFN   75 (307)
Q Consensus        62 rKI~-a~LP~L~yLD   75 (307)
                      ..+. +-.|.|..|+
T Consensus       290 la~~~~ek~dL~kLn  304 (382)
T KOG1909|consen  290 LAACMAEKPDLEKLN  304 (382)
T ss_pred             HHHHHhcchhhHHhc
Confidence            2222 3356665554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.68  E-value=0.04  Score=52.63  Aligned_cols=35  Identities=23%  Similarity=0.398  Sum_probs=28.9

Q ss_pred             cccccCCeeeccCcccc---cccCCCCCCCCCeEeccc
Q 021827            5 TSVVSLRALILNDNEIV---SICKLDQMKELNTLGMDS   39 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~Is---sIegLe~L~nL~TLdLS~   39 (307)
                      ..+++|+.|+|+.|+|.   +|..|..|.||.+|+|.+
T Consensus        88 e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n  125 (260)
T KOG2739|consen   88 EKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFN  125 (260)
T ss_pred             hhCCceeEEeecCCccccccccchhhhhcchhhhhccc
Confidence            45699999999999998   555566777888999986

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.61  E-value=0.045  Score=51.28  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=17.0

Q ss_pred             CCCCCceEEccCCCccCc-cchHHHHHHhCCCCcee
Q 021827           40 YFFNLNNLNLQGNPVAEY-DKLAKKVKTLLPNLCIF   74 (307)
Q Consensus        40 ~L~nLrtLnLeGNPIak~-e~YrrKI~a~LP~L~yL   74 (307)
                      +|+||+-|.|.+=|.... +.....+..+||.|++.
T Consensus       174 ~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~  209 (221)
T KOG3864|consen  174 KLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIV  209 (221)
T ss_pred             HhhhhHHHHhcCchhhhchHHHHHHHHHhCccccee
Confidence            455555555555554433 22233444566666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.52  E-value=0.05  Score=59.03  Aligned_cols=35  Identities=31%  Similarity=0.449  Sum_probs=18.2

Q ss_pred             ccccccCCeeeccCcccccccC-CCCCCCCCeEecc
Q 021827            4 VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD   38 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS   38 (307)
                      |..|.+|+.|+|++-.|+.|+. |..|+.|.+|+|.
T Consensus       591 I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~  626 (889)
T KOG4658|consen  591 IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE  626 (889)
T ss_pred             HhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence            3445555555555555554443 5555555555555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.30  E-value=0.056  Score=57.20  Aligned_cols=74  Identities=22%  Similarity=0.279  Sum_probs=58.8

Q ss_pred             ccccccccCCeeeccCccccc---ccCCCCCCCCCeEeccc------------------CCCCCceEEccCCCccCccch
Q 021827            2 DDVTSVVSLRALILNDNEIVS---ICKLDQMKELNTLGMDS------------------YFFNLNNLNLQGNPVAEYDKL   60 (307)
Q Consensus         2 DeL~~L~nL~aL~LS~N~Iss---IegLe~L~nL~TLdLS~------------------~L~nLrtLnLeGNPIak~e~Y   60 (307)
                      .+|+.|.||+.|.+.+=.|++   |..|=+|++|++||+|.                  -||+||.|..+|.-+...-  
T Consensus       189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~--  266 (699)
T KOG3665|consen  189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI--  266 (699)
T ss_pred             HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH--
Confidence            478899999999999888886   33577899999999995                  7899999999988776543  


Q ss_pred             HHHHHHhCCCCceecCc
Q 021827           61 AKKVKTLLPNLCIFNAR   77 (307)
Q Consensus        61 rrKI~a~LP~L~yLDar   77 (307)
                      ...++..-|+|+++-+-
T Consensus       267 le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  267 LEELLNSHPNLQQIAAL  283 (699)
T ss_pred             HHHHHHhCccHhhhhhh
Confidence            25666677877776643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.75  E-value=0.037  Score=56.79  Aligned_cols=17  Identities=18%  Similarity=0.110  Sum_probs=11.5

Q ss_pred             ccccCCCCCccccCCCC
Q 021827          286 LTVQLSQEPEVGLGGPS  302 (307)
Q Consensus       286 ~~~~l~~~~EvG~Gg~S  302 (307)
                      +-.|+.++++-||++.+
T Consensus       489 s~nqi~~vd~~~l~nm~  505 (565)
T KOG0472|consen  489 SNNQIGSVDPSGLKNMR  505 (565)
T ss_pred             ccccccccChHHhhhhh
Confidence            33677777777877743

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=89.46  E-value=0.16  Score=53.88  Aligned_cols=20  Identities=25%  Similarity=0.331  Sum_probs=17.8

Q ss_pred             CCCCCceEEccCCCccCccc
Q 021827           40 YFFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus        40 ~L~nLrtLnLeGNPIak~e~   59 (307)
                      +|..|++|-|+.||+.+-+.
T Consensus       232 ~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  232 KMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             hhhhheeeeeccCCCCCChH
Confidence            88999999999999988655

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.69  E-value=0.15  Score=50.93  Aligned_cols=29  Identities=31%  Similarity=0.456  Sum_probs=13.2

Q ss_pred             CCeeeccCcccccccC----CCCCCCCCeEecc
Q 021827           10 LRALILNDNEIVSICK----LDQMKELNTLGMD   38 (307)
Q Consensus        10 L~aL~LS~N~IssIeg----Le~L~nL~TLdLS   38 (307)
                      +++|+|..|+|+.-+.    |++|+.|++|.||
T Consensus        73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls  105 (418)
T KOG2982|consen   73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLS  105 (418)
T ss_pred             hhhhhcccchhccHHHHHHHHhcCccceEeecc
Confidence            4445555555542211    4444444555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=86.87  E-value=0.51  Score=51.47  Aligned_cols=53  Identities=21%  Similarity=0.370  Sum_probs=39.0

Q ss_pred             cccCCeeeccCcc--cccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccc
Q 021827            7 VVSLRALILNDNE--IVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus         7 L~nL~aL~LS~N~--IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~   59 (307)
                      +.+|++|-|..|.  +..|.+  +-.|+.|.+||||.            .|-+||.|+|++..|...|.
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~  612 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS  612 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch
Confidence            3468888888886  777777  77788888888883            56777888888877765543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=86.70  E-value=0.13  Score=46.63  Aligned_cols=73  Identities=22%  Similarity=0.323  Sum_probs=57.9

Q ss_pred             cCCeeeccCcccccccC----CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            9 SLRALILNDNEIVSICK----LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         9 nL~aL~LS~N~IssIeg----Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      .|-.|.|+..+|-.|..    |.....|++.+||.            .|+-+.+|||+.|-|++.+-   . .+.+|.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe---E-~Aam~aLr  103 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE---E-LAAMPALR  103 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH---H-HhhhHHhh
Confidence            46788999998886654    77888999999996            66789999999999999887   2 78899999


Q ss_pred             eecCcc--cChhhhh
Q 021827           73 IFNARP--IDRITKN   85 (307)
Q Consensus        73 yLDarp--V~e~tRe   85 (307)
                      .|+.+.  +...-|-
T Consensus       104 ~lNl~~N~l~~~p~v  118 (177)
T KOG4579|consen  104 SLNLRFNPLNAEPRV  118 (177)
T ss_pred             hcccccCccccchHH
Confidence            888653  4444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=86.46  E-value=0.47  Score=47.62  Aligned_cols=83  Identities=20%  Similarity=0.277  Sum_probs=63.4

Q ss_pred             ccccccCCeeeccCccccc------ccCCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccch-
Q 021827            4 VTSVVSLRALILNDNEIVS------ICKLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDKL-   60 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~Iss------IegLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~Y-   60 (307)
                      ++.+.+|+++-++.|.|..      .++|..|++|+.|||..                .+++|+.|||..+-+...--| 
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence            4566889999999999973      24588999999999985                779999999999999876444 


Q ss_pred             -HHHHHHhCCCCceecCcccChhhhhhh
Q 021827           61 -AKKVKTLLPNLCIFNARPIDRITKNEK   87 (307)
Q Consensus        61 -rrKI~a~LP~L~yLDarpV~e~tRe~a   87 (307)
                       .+.+..-.|.|+.++. +-.+.+|+.+
T Consensus       261 ~~~al~~~~p~L~vl~l-~gNeIt~da~  287 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLEL-AGNEITRDAA  287 (382)
T ss_pred             HHHHHhccCCCCceecc-CcchhHHHHH
Confidence             4455556899999983 3344555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=86.45  E-value=0.53  Score=47.82  Aligned_cols=48  Identities=21%  Similarity=0.275  Sum_probs=36.8

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCC
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNP   53 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNP   53 (307)
                      |..|.+|..|+|++|.|++++.|+.  +|++|.|++          -.++|+.|+|.+|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~LP~--sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs  105 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPVLPN--ELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP  105 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCCCCC--CCcEEEccCCCCcccCCchhhhhhhheEccCcc
Confidence            4457889999999998888874432  589999886          12578888888873

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.02  E-value=0.3  Score=45.86  Aligned_cols=65  Identities=20%  Similarity=0.283  Sum_probs=49.4

Q ss_pred             CCeeeccCccccc--ccCCCCCCCCCeEeccc--------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827           10 LRALILNDNEIVS--ICKLDQMKELNTLGMDS--------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus        10 L~aL~LS~N~Iss--IegLe~L~nL~TLdLS~--------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      +++++-++-.|..  +++|..|+.|.+|.|.+              -+++|+.|.|+|||....-.  ...+..|++|+.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G--L~~L~~lknLr~  180 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG--LACLLKLKNLRR  180 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH--HHHHHHhhhhHH
Confidence            6788888888874  46688888888888886              45999999999999977655  345555666665


Q ss_pred             ecC
Q 021827           74 FNA   76 (307)
Q Consensus        74 LDa   76 (307)
                      |..
T Consensus       181 L~l  183 (221)
T KOG3864|consen  181 LHL  183 (221)
T ss_pred             HHh
Confidence            543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=85.98  E-value=0.6  Score=43.55  Aligned_cols=72  Identities=18%  Similarity=0.169  Sum_probs=38.9

Q ss_pred             ccccCCeeeccCc--cccc-----ccCCCCCCCCCeEeccc--------------CCCCCceEEccCCCccCccchHHHH
Q 021827            6 SVVSLRALILNDN--EIVS-----ICKLDQMKELNTLGMDS--------------YFFNLNNLNLQGNPVAEYDKLAKKV   64 (307)
Q Consensus         6 ~L~nL~aL~LS~N--~Iss-----IegLe~L~nL~TLdLS~--------------~L~nLrtLnLeGNPIak~e~YrrKI   64 (307)
                      .+.+|++|+|+.+  .+..     ..-+..+.+|+.|+|+.              .+++|++|.+.+++-..... -..|
T Consensus       212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g-l~~i  290 (482)
T KOG1947|consen  212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG-LVSI  290 (482)
T ss_pred             hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH-HHHH
Confidence            4556777777652  1111     11234456666666664              45677777755555322222 2455


Q ss_pred             HHhCCCCceecCcc
Q 021827           65 KTLLPNLCIFNARP   78 (307)
Q Consensus        65 ~a~LP~L~yLDarp   78 (307)
                      ...+|.|+.|+-..
T Consensus       291 ~~~~~~L~~L~l~~  304 (482)
T KOG1947|consen  291 AERCPSLRELDLSG  304 (482)
T ss_pred             HHhcCcccEEeeec
Confidence            56667777776554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.22  E-value=0.082  Score=52.31  Aligned_cols=71  Identities=20%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             cccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCcee--
Q 021827            7 VVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF--   74 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yL--   74 (307)
                      |.+.+-|++-+.+|..|.=+..++-|+.|.||-          +|.+|+.|||..|-|.+.+.  .+-+.-||+|+.|  
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldE--L~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDE--LEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHH--HHHHhcCchhhhHhh
Confidence            566788999999999999999999999999993          88999999999999999876  3556678888864  


Q ss_pred             cCccc
Q 021827           75 NARPI   79 (307)
Q Consensus        75 DarpV   79 (307)
                      +-.|.
T Consensus        96 ~ENPC  100 (388)
T KOG2123|consen   96 DENPC  100 (388)
T ss_pred             ccCCc
Confidence            44554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=84.80  E-value=0.078  Score=56.15  Aligned_cols=53  Identities=28%  Similarity=0.334  Sum_probs=38.9

Q ss_pred             ccccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCc
Q 021827            4 VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~   57 (307)
                      ...|..|..|+|++|.|.+|.- +-+|..|+.|+|+.           .|+ |+.|.+..|-+...
T Consensus        94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~l  158 (722)
T KOG0532|consen   94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSL  158 (722)
T ss_pred             HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccC
Confidence            3456778888888888887766 66677778888885           444 77888888777654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=82.91  E-value=0.9  Score=26.38  Aligned_cols=16  Identities=31%  Similarity=0.441  Sum_probs=10.6

Q ss_pred             CCCceEEccCCCccCc
Q 021827           42 FNLNNLNLQGNPVAEY   57 (307)
Q Consensus        42 ~nLrtLnLeGNPIak~   57 (307)
                      ++|++|+|.+|.+.+.
T Consensus         1 ~~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSL   16 (17)
T ss_dssp             TT-SEEEETSS--SSE
T ss_pred             CccCEEECCCCCCCCC
Confidence            5799999999998654

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=81.20  E-value=1.2  Score=27.22  Aligned_cols=19  Identities=26%  Similarity=0.412  Sum_probs=16.3

Q ss_pred             CCCCceEEccCCCccCccc
Q 021827           41 FFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus        41 L~nLrtLnLeGNPIak~e~   59 (307)
                      |++|++|+|.+|.|...+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCcCCH
Confidence            5789999999999988765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=81.20  E-value=1.2  Score=27.22  Aligned_cols=19  Identities=26%  Similarity=0.412  Sum_probs=16.3

Q ss_pred             CCCCceEEccCCCccCccc
Q 021827           41 FFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus        41 L~nLrtLnLeGNPIak~e~   59 (307)
                      |++|++|+|.+|.|...+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCcCCH
Confidence            5789999999999988765

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.03  E-value=0.89  Score=27.53  Aligned_cols=14  Identities=36%  Similarity=0.498  Sum_probs=5.6

Q ss_pred             ccCCeeeccCcccc
Q 021827            8 VSLRALILNDNEIV   21 (307)
Q Consensus         8 ~nL~aL~LS~N~Is   21 (307)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34444555555443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.5 bits (120), Expect = 3e-07
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 9   SLRALILNDNEIVSICKLDQMKELNTLGMD-------------SYFFNLNNLNLQGNPVA 55
            L  L  +DN + ++  +  +  L  L +                   L  LNLQGN + 
Sbjct: 487 CLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

Query: 56  EYDKLAKKVKTLLPNL 71
           + + + +++  +LP++
Sbjct: 547 QEEGIQERLAEMLPSV 562

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 9   SLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68
            L  LIL +N +V +  LD +  L          +L  L +  NPV         V   +
Sbjct: 89  DLTELILTNNSLVELGDLDPLASLK---------SLTYLCILRNPVTNKKHYRLYVIYKV 139

Query: 69  PNLCIFNARPIDRITKNE 86
           P + + + + +    + E
Sbjct: 140 PQVRVLDFQKVKLKERQE 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 16/85 (18%)

Query: 9   SLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLA------- 61
           +LR L +++N+I +  ++D++  L+          L +L L GNP+    K         
Sbjct: 116 NLRVLYMSNNKITNWGEIDKLAALD---------KLEDLLLAGNPLYNDYKENNATSEYR 166

Query: 62  KKVKTLLPNLCIFNARPIDRITKNE 86
            +V   LPNL   +  P+D   + +
Sbjct: 167 IEVVKRLPNLKKLDGMPVDVDEREQ 191

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 9   SLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68
           +L  L L+ N++  I  L+ +K+L           L +L+L    V   +   + V  LL
Sbjct: 96  NLTHLNLSGNKLKDISTLEPLKKLE---------CLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 69  PNLCIFNARPID 80
           P L   +    +
Sbjct: 147 PQLTYLDGYDRE 158

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 9   SLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68
           +L  L L+ N+I  +  ++ +K+L          NL +L+L    V   +   + V  LL
Sbjct: 89  NLTHLNLSGNKIKDLSTIEPLKKLE---------NLKSLDLFNCEVTNLNDYRENVFKLL 139

Query: 69  PNL 71
           P L
Sbjct: 140 PQL 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	99.27
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.23
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.01
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.73
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.63
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.55
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.53
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.51
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.5
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.48
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.46
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.45
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.44
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.43
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.41
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.41
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.4
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.4
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.39
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.38
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.37
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.35
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.34
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.33
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.33
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.32
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.31
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.3
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.3
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.28
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.28
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.26
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.26
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.25
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.21
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.2
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.1
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.02
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.02
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.02
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.02
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.01
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.01
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.01
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.99
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.99
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.99
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.95
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.82
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.81
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.8
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.78
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.69
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.53
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.48
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.47
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.47
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.45
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.41
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.41
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.39
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.33
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.32
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.31
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.03
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.01
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.95
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.74
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.71
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.51
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.65
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.06
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.07
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	91.85
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.63
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.14
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	88.2
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	86.5
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	84.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	84.04
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	82.73

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=99.27  E-value=3e-12  Score=116.46  Aligned_cols=78  Identities=17%  Similarity=0.320  Sum_probs=69.6

Q ss_pred             cccccCCeeeccCcccccccCCC----CCCCCCeEeccc----------CCC--CCceEEccCCCccC----ccchHHHH
Q 021827            5 TSVVSLRALILNDNEIVSICKLD----QMKELNTLGMDS----------YFF--NLNNLNLQGNPVAE----YDKLAKKV   64 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegLe----~L~nL~TLdLS~----------~L~--nLrtLnLeGNPIak----~e~YrrKI   64 (307)
                      ..|++|++|+|++|+|+.|.+|+    .|++|++|+||+          .|.  +|+.|+|.||||+.    .+.|+..+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            45889999999999999999877    799999999997          333  89999999999986    46899999


Q ss_pred             HHhCCCCceecCcccChh
Q 021827           65 KTLLPNLCIFNARPIDRI   82 (307)
Q Consensus        65 ~a~LP~L~yLDarpV~e~   82 (307)
                      +..||+|++||+.+|.+.
T Consensus       247 l~~~P~L~~LDg~~v~p~  264 (267)
T 3rw6_A          247 RERFPKLLRLDGHELPPP  264 (267)
T ss_dssp             HHHCTTCCEESSCBCCCC
T ss_pred             HHHCcccCeECCcCCCCC
Confidence            999999999999998753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.23  E-value=2.6e-11  Score=98.47  Aligned_cols=87  Identities=18%  Similarity=0.293  Sum_probs=70.2

Q ss_pred             cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHh
Q 021827            3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTL   67 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~   67 (307)
                      .+..|++|+.|+|++|+|+.+..  +..|++|++|+|++             .+++|++|+|.+||++..+.|+.++...
T Consensus        59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~  138 (176)
T 1a9n_A           59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK  138 (176)
T ss_dssp             CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH
T ss_pred             ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHH
Confidence            45566677777777777776653  36677777777764             5789999999999999999999999999


Q ss_pred             CCCCceecCcccChhhhhhhcc
Q 021827           68 LPNLCIFNARPIDRITKNEKDN   89 (307)
Q Consensus        68 LP~L~yLDarpV~e~tRe~a~~   89 (307)
                      +|+|++||...+...+|..+..
T Consensus       139 l~~L~~Ld~~~n~~~~~~~~~~  160 (176)
T 1a9n_A          139 VPQVRVLDFQKVKLKERQEAEK  160 (176)
T ss_dssp             CTTCSEETTEECCHHHHHHHHH
T ss_pred             CCccceeCCCcCCHHHHHHHHH
Confidence            9999999999999999887743

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.08  E-value=7.7e-12  Score=103.39  Aligned_cols=82  Identities=26%  Similarity=0.380  Sum_probs=69.4

Q ss_pred             ccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCc-------cchHHHHH
Q 021827            6 SVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEY-------DKLAKKVK   65 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~-------e~YrrKI~   65 (307)
                      .+++|+.|+|++|+|+.++.+..|++|++|+|++             .+++|++|+|.+||+...       ..|+..+.
T Consensus        91 ~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           91 VADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             cCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            3467777777777777777777777888888875             689999999999999776       77888889


Q ss_pred             HhCCCCceecCcccChhhhhhh
Q 021827           66 TLLPNLCIFNARPIDRITKNEK   87 (307)
Q Consensus        66 a~LP~L~yLDarpV~e~tRe~a   87 (307)
                      ..+|+|++||+.+|.+.+|..|
T Consensus       171 ~~l~~L~~Ld~~~i~~~e~~~a  192 (198)
T 1ds9_A          171 KRLPNLKKLDGMPVDVDEREQA  192 (198)
T ss_dssp             HHCSSCSEECCGGGTTTTTTHH
T ss_pred             HhCCCcEEECCcccCHHHHHHH
Confidence            9999999999999999998876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.01  E-value=4.6e-10  Score=89.71  Aligned_cols=81  Identities=21%  Similarity=0.334  Sum_probs=54.6

Q ss_pred             ccccccCCeeeccCccccc-ccCC-CCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827            4 VTSVVSLRALILNDNEIVS-ICKL-DQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL   68 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~Iss-IegL-e~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L   68 (307)
                      +..|++|+.|+|++|+|+. ++.+ ..|++|++|+|++             .|++|++|+|.+|++...+.|+..+...+
T Consensus        67 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l  146 (168)
T 2ell_A           67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL  146 (168)
T ss_dssp             CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred             hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence            3444555555555555554 3332 2255555555553             56888999999999998888888888899


Q ss_pred             CCCceecCcccChhhh
Q 021827           69 PNLCIFNARPIDRITK   84 (307)
Q Consensus        69 P~L~yLDarpV~e~tR   84 (307)
                      |+|++||.......++
T Consensus       147 ~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          147 PQLTYLDGYDREDQEA  162 (168)
T ss_dssp             SSCCEETTEETTSCBC
T ss_pred             ccCcEecCCCCChhhc
Confidence            9999999877655443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.00  E-value=9e-10  Score=86.40  Aligned_cols=72  Identities=24%  Similarity=0.344  Sum_probs=46.3

Q ss_pred             cccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------------------------------CCCCCceE
Q 021827            5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------------------------------YFFNLNNL   47 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------------------------------~L~nLrtL   47 (307)
                      ..|++|+.|+|++|.|+.+..+..|++|++|+|++                                     .+++|++|
T Consensus        39 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L  118 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL  118 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred             hhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence            44555555555555555554455555555555553                                     55677777


Q ss_pred             EccCCCccCccchHHHHHHhCCCCceecC
Q 021827           48 NLQGNPVAEYDKLAKKVKTLLPNLCIFNA   76 (307)
Q Consensus        48 nLeGNPIak~e~YrrKI~a~LP~L~yLDa   76 (307)
                      +|.+|+++..+.|+..+...+|+|++||.
T Consensus       119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A          119 DLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             eCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            77777777777777777777777777774

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.82  E-value=3e-09  Score=103.93  Aligned_cols=73  Identities=21%  Similarity=0.321  Sum_probs=66.1

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      .+..|++|+.|+|++|+|+.|+.+..|++|++|+|++             .|++|++|+|.+||++..+.+...+...||
T Consensus       481 ~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp  560 (567)
T 1dce_A          481 ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP  560 (567)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred             hhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence            5678889999999999999999899999999999986             578999999999999999988889999999


Q ss_pred             CCceec
Q 021827           70 NLCIFN   75 (307)
Q Consensus        70 ~L~yLD   75 (307)
                      +|++||
T Consensus       561 ~L~~L~  566 (567)
T 1dce_A          561 SVSSIL  566 (567)
T ss_dssp             TCSEEE
T ss_pred             ccCccC
Confidence            999986

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.75  E-value=9.9e-10  Score=95.70  Aligned_cols=85  Identities=15%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      .+..|++|+.|+|++|+|+.++.+..|++|++|+|++          .|++|+.|+|.+|||...+.++.....++|.|.
T Consensus       123 ~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~~~~~~~~l~~~~~l~  202 (263)
T 1xeu_A          123 SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK  202 (263)
T ss_dssp             GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECCCEECCSEEEEECCCB
T ss_pred             hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCCccccccceEECCeee
Confidence            4566777778888888887777777777788887775          567788888888888776554443344567788


Q ss_pred             eecCcccChhhhhhh
Q 021827           73 IFNARPIDRITKNEK   87 (307)
Q Consensus        73 yLDarpV~e~tRe~a   87 (307)
                      .+|+.+|....+...
T Consensus       203 ~l~~~~i~~~~i~~~  217 (263)
T 1xeu_A          203 DPDGRWISPYYISNG  217 (263)
T ss_dssp             CTTSCBCCCSEEGGG
T ss_pred             cCCCCCcCCCEecCC
Confidence            888888776665544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.73  E-value=9.6e-09  Score=87.31  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=56.7

Q ss_pred             cccccCCeeeccCccccccc-CCCCCCCCCeEeccc------------CCCCCceEEccCCCccC----ccchHHHHHHh
Q 021827            5 TSVVSLRALILNDNEIVSIC-KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE----YDKLAKKVKTL   67 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIe-gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak----~e~YrrKI~a~   67 (307)
                      ..|.+|+.|+|++|+|+.|+ .+..|++|++|+|++            .+++|++|+|.|||+.-    ...|+.++...
T Consensus       109 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~  188 (229)
T 3e6j_A          109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADH  188 (229)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHC
T ss_pred             CcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhC
Confidence            45566666666666666663 356666777777764            56889999999999853    34467777788


Q ss_pred             CCCCceecCcccChhhhh
Q 021827           68 LPNLCIFNARPIDRITKN   85 (307)
Q Consensus        68 LP~L~yLDarpV~e~tRe   85 (307)
                      .+.+..+|+.+|....+.
T Consensus       189 ~~~~~~~~g~~v~~~~~~  206 (229)
T 3e6j_A          189 TSIAMRWDGKAVNDPDSA  206 (229)
T ss_dssp             GGGEEEESSSEEECTTCS
T ss_pred             ccccccccCcccCCCCcC
Confidence            888889998887655443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.69  E-value=2.9e-08  Score=81.87  Aligned_cols=76  Identities=20%  Similarity=0.339  Sum_probs=55.0

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccc----hHHHHH
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDK----LAKKVK   65 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~----YrrKI~   65 (307)
                      +..|.+|+.|+|++|+|+.|..  +..|++|++|+|++            .|++|+.|+|.+||+.-...    ++.++.
T Consensus        53 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~  132 (174)
T 2r9u_A           53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVA  132 (174)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHH
T ss_pred             hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHH
Confidence            5678888888888888888876  67888888888886            56888999999999875543    344554


Q ss_pred             HhCCCCceecCccc
Q 021827           66 TLLPNLCIFNARPI   79 (307)
Q Consensus        66 a~LP~L~yLDarpV   79 (307)
                      .....+..+++.++
T Consensus       133 ~~~~~~~~~~~~~~  146 (174)
T 2r9u_A          133 DHTSIVMRWDGKAV  146 (174)
T ss_dssp             HCGGGEEEESSSEE
T ss_pred             hccccccccccccc
Confidence            44444544555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.63  E-value=3.6e-08  Score=82.32  Aligned_cols=69  Identities=22%  Similarity=0.264  Sum_probs=42.6

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|.+|+.|+|++|.|+.|..  +..|++|++|+|++            .|++|++|+|.+|.|...+.   .+...+|
T Consensus        50 ~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~  126 (193)
T 2wfh_A           50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE---GAFNDLS  126 (193)
T ss_dssp             GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT---TTTTTCT
T ss_pred             hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh---hhhhcCc
Confidence            4556666777777777766664  66666677777664            45666667777776665543   2233456


Q ss_pred             CCceec
Q 021827           70 NLCIFN   75 (307)
Q Consensus        70 ~L~yLD   75 (307)
                      +|++|+
T Consensus       127 ~L~~L~  132 (193)
T 2wfh_A          127 ALSHLA  132 (193)
T ss_dssp             TCCEEE
T ss_pred             cccEEE
Confidence            666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.61  E-value=5.3e-09  Score=92.11  Aligned_cols=68  Identities=26%  Similarity=0.421  Sum_probs=42.9

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      .+..|++|+.|+|++|+|+.+..+..|++|++|+|++          .|++|+.|+|.+|++...+.     ...+|+|+
T Consensus       129 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~-----l~~l~~L~  203 (291)
T 1h6t_A          129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-----LAGLKNLD  203 (291)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-----GTTCTTCS
T ss_pred             hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChh-----hccCCCCC
Confidence            4556667777777777777776667777777777764          45666666666666655432     23456666


Q ss_pred             eec
Q 021827           73 IFN   75 (307)
Q Consensus        73 yLD   75 (307)
                      +|+
T Consensus       204 ~L~  206 (291)
T 1h6t_A          204 VLE  206 (291)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.59  E-value=6.2e-08  Score=79.89  Aligned_cols=71  Identities=11%  Similarity=0.161  Sum_probs=39.5

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN   70 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~   70 (307)
                      ++..|++|+.|+|++|.|+.+..+..|++|++|+|++            .|++|++|+|.+|.+.....   .....+|+
T Consensus        61 ~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~l~~l~~  137 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL---TKINTLPK  137 (197)
T ss_dssp             TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH---HHHTTCSS
T ss_pred             HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH---HHHhhCCC
Confidence            3455556666666666666665666666666666654            44566666666666654221   22334566


Q ss_pred             CceecC
Q 021827           71 LCIFNA   76 (307)
Q Consensus        71 L~yLDa   76 (307)
                      |++|+-
T Consensus       138 L~~L~L  143 (197)
T 4ezg_A          138 VNSIDL  143 (197)
T ss_dssp             CCEEEC
T ss_pred             CCEEEc
Confidence            666553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.55  E-value=1.1e-07  Score=78.41  Aligned_cols=71  Identities=20%  Similarity=0.329  Sum_probs=59.8

Q ss_pred             ccccccccCCeeeccCccccc--ccCCCCCCCCCeEeccc------------CCCCCceEEccCCC-ccCccchHHHHHH
Q 021827            2 DDVTSVVSLRALILNDNEIVS--ICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNP-VAEYDKLAKKVKT   66 (307)
Q Consensus         2 DeL~~L~nL~aL~LS~N~Iss--IegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNP-Iak~e~YrrKI~a   66 (307)
                      ..+..|++|+.|+|++|.|+.  +..+..|++|++|+|++            .|++|+.|+|.+|+ +...+.     ..
T Consensus        82 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-----l~  156 (197)
T 4ezg_A           82 NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-----LK  156 (197)
T ss_dssp             GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-----GG
T ss_pred             hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh-----hc
Confidence            356788999999999999996  77799999999999996            77999999999998 766642     46


Q ss_pred             hCCCCceecCc
Q 021827           67 LLPNLCIFNAR   77 (307)
Q Consensus        67 ~LP~L~yLDar   77 (307)
                      .+|+|++|+..
T Consensus       157 ~l~~L~~L~l~  167 (197)
T 4ezg_A          157 TLPELKSLNIQ  167 (197)
T ss_dssp             GCSSCCEEECT
T ss_pred             CCCCCCEEECC
Confidence            78999998853

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.54  E-value=1.1e-07  Score=83.28  Aligned_cols=52  Identities=25%  Similarity=0.372  Sum_probs=27.8

Q ss_pred             cccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccC
Q 021827            5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAE   56 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak   56 (307)
                      ..+++|+.|+|++|.|+.+..+..+++|++|+|++          .+++|+.|+|.+|++..
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCG
T ss_pred             hcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCC
Confidence            44555555555555555555555555555555554          34455555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.53  E-value=8.9e-08  Score=81.08  Aligned_cols=72  Identities=22%  Similarity=0.274  Sum_probs=54.0

Q ss_pred             cccccccCCeeeccCcccccc--cCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827            3 DVTSVVSLRALILNDNEIVSI--CKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL   68 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssI--egLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L   68 (307)
                      .+..|.+|+.|+|++|+|+.|  ..+..|++|++|+|++            .+++|++|+|.+|.|.....   .....+
T Consensus        51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l  127 (220)
T 2v9t_B           51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV---DAFQDL  127 (220)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTC
T ss_pred             HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH---HHcCCC
Confidence            356678888888888888888  4488888888888885            46788888888888877643   233457


Q ss_pred             CCCceecCc
Q 021827           69 PNLCIFNAR   77 (307)
Q Consensus        69 P~L~yLDar   77 (307)
                      |+|++||-.
T Consensus       128 ~~L~~L~L~  136 (220)
T 2v9t_B          128 HNLNLLSLY  136 (220)
T ss_dssp             TTCCEEECC
T ss_pred             CCCCEEECC
Confidence            888887643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.51  E-value=8.8e-08  Score=79.33  Aligned_cols=69  Identities=20%  Similarity=0.227  Sum_probs=43.0

Q ss_pred             ccccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|.+|+.|+|++|+|+.+.  .+..|++|++|+|++            .+++|++|+|.+|.|.....   .....+|
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~  126 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP---GSFEHLN  126 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT---TSSTTCT
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH---HHhhcCC
Confidence            456667777777777777663  366677777777765            45667777777777665422   1223456


Q ss_pred             CCceec
Q 021827           70 NLCIFN   75 (307)
Q Consensus        70 ~L~yLD   75 (307)
                      +|++|+
T Consensus       127 ~L~~L~  132 (192)
T 1w8a_A          127 SLTSLN  132 (192)
T ss_dssp             TCCEEE
T ss_pred             CCCEEE
Confidence            666665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.50  E-value=1.1e-07  Score=83.80  Aligned_cols=67  Identities=22%  Similarity=0.410  Sum_probs=37.3

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      +..|++|+.|+|++|.|+.++.+..|++|++|+|++          .+++|+.|+|.+|.+...+     ....+|+|++
T Consensus        86 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~  160 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDT  160 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSE
T ss_pred             cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcch-----hhccCCCCCE
Confidence            445566666666666666666666666666666654          4455555555555555442     1234455555


Q ss_pred             ec
Q 021827           74 FN   75 (307)
Q Consensus        74 LD   75 (307)
                      |+
T Consensus       161 L~  162 (291)
T 1h6t_A          161 LS  162 (291)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.50  E-value=1.8e-07  Score=79.44  Aligned_cols=69  Identities=20%  Similarity=0.328  Sum_probs=52.2

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|.+|+.|+|++|+|+.|..  +..|++|++|+|++            .|++|++|+|.+|.|...+..    ...+|
T Consensus        60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~----~~~l~  135 (229)
T 3e6j_A           60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG----IERLT  135 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT----GGGCT
T ss_pred             hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcc----cccCC
Confidence            5667788888888888888765  67788888888885            567888888888888866542    26678


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      +|++|+-
T Consensus       136 ~L~~L~L  142 (229)
T 3e6j_A          136 HLTHLAL  142 (229)
T ss_dssp             TCSEEEC
T ss_pred             CCCEEEC
Confidence            8888874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.50  E-value=1.2e-07  Score=77.43  Aligned_cols=54  Identities=20%  Similarity=0.351  Sum_probs=33.9

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~   57 (307)
                      +..|.+|+.|+|++|+|+.|..  +..|++|++|+|++            .|++|+.|+|.+||+.-.
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            4456666666666666666655  45666666666664            456666666666666433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.50  E-value=1.3e-07  Score=76.29  Aligned_cols=65  Identities=23%  Similarity=0.279  Sum_probs=32.2

Q ss_pred             ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      .+|+.|+|++|+|+.+..  +..+++|++|+|++            .+++|+.|+|.+|.+...+.   .+...+|+|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN---GVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCH---HHhhCCcccCE
Confidence            345555555555555543  44555555555553            34455555555555554433   12233455555


Q ss_pred             ec
Q 021827           74 FN   75 (307)
Q Consensus        74 LD   75 (307)
                      |+
T Consensus       105 L~  106 (177)
T 2o6r_A          105 LA  106 (177)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.49  E-value=1.3e-07  Score=79.99  Aligned_cols=67  Identities=24%  Similarity=0.286  Sum_probs=48.1

Q ss_pred             ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      .+|+.|+|++|+|+.|..  +..|++|+.|+|++            .|++|++|+|.+|.|...+.   .+...+|+|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK---SLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT---TTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH---hHccCCCCCCE
Confidence            467888888888887773  77778888888875            56778888888888876654   23345777777


Q ss_pred             ecCc
Q 021827           74 FNAR   77 (307)
Q Consensus        74 LDar   77 (307)
                      |+-.
T Consensus       109 L~L~  112 (220)
T 2v9t_B          109 LLLN  112 (220)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            7643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.48  E-value=1.3e-07  Score=76.67  Aligned_cols=71  Identities=23%  Similarity=0.306  Sum_probs=44.0

Q ss_pred             ccccc-cCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827            4 VTSVV-SLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN   70 (307)
Q Consensus         4 L~~L~-nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~   70 (307)
                      +..+. +|+.|+|++|.|+.++.+..|++|++|+|++            .|++|++|+|.+|.|...+.+  .....+|+
T Consensus        37 ~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~--~~l~~l~~  114 (176)
T 1a9n_A           37 LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL--DPLASLKS  114 (176)
T ss_dssp             GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGG--GGGGGCTT
T ss_pred             hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhh--HhhhcCCC
Confidence            33444 6777777777777776677777777777765            456677777777777655441  12335666


Q ss_pred             CceecC
Q 021827           71 LCIFNA   76 (307)
Q Consensus        71 L~yLDa   76 (307)
                      |++|+.
T Consensus       115 L~~L~l  120 (176)
T 1a9n_A          115 LTYLCI  120 (176)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            766653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.48  E-value=1.3e-07  Score=81.65  Aligned_cols=71  Identities=25%  Similarity=0.319  Sum_probs=40.7

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN   70 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~   70 (307)
                      .+..|++|+.|+|++|.|+.+..+..|++|++|+|++            .+++|++|+|.+|.+...+.   .....+|+
T Consensus        58 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~  134 (272)
T 3rfs_A           58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD---GVFDKLTN  134 (272)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT---TTTTTCTT
T ss_pred             ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH---HHhccCCC
Confidence            3455566666666666666666666666666666664            34566666666666654433   12234566


Q ss_pred             CceecC
Q 021827           71 LCIFNA   76 (307)
Q Consensus        71 L~yLDa   76 (307)
                      |++|+.
T Consensus       135 L~~L~L  140 (272)
T 3rfs_A          135 LTYLNL  140 (272)
T ss_dssp             CCEEEC
T ss_pred             CCEEEC
Confidence            666553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.46  E-value=1.5e-07  Score=79.65  Aligned_cols=70  Identities=17%  Similarity=0.234  Sum_probs=53.7

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|++|+.|+|++|+|+.|..  +..|++|++|+|++            .|++|++|+|.+|.|.....   .....+|
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~  129 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN---DSFIGLS  129 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT---TSSTTCT
T ss_pred             hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH---hHcCCCc
Confidence            5678888888888888888875  88888888888885            56888888888888877643   1223578


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      +|++|+-
T Consensus       130 ~L~~L~L  136 (220)
T 2v70_A          130 SVRLLSL  136 (220)
T ss_dssp             TCSEEEC
T ss_pred             cCCEEEC
Confidence            8888774

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.46  E-value=1.7e-07  Score=76.61  Aligned_cols=67  Identities=22%  Similarity=0.316  Sum_probs=56.9

Q ss_pred             cccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            7 VVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      ..+|+.|+|++|+|+.|..  +..|++|++|+|++            .|++|++|+|.+|.|...+.   .+...+|+|+
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~  105 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR---GAFDNLKSLT  105 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCC
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCH---HHhcCCCCCC
Confidence            3679999999999999954  89999999999996            67899999999999998765   3345688998


Q ss_pred             eecC
Q 021827           73 IFNA   76 (307)
Q Consensus        73 yLDa   76 (307)
                      +|+-
T Consensus       106 ~L~L  109 (170)
T 3g39_A          106 HIWL  109 (170)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8863

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.45  E-value=1.2e-07  Score=87.72  Aligned_cols=55  Identities=24%  Similarity=0.228  Sum_probs=31.3

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCcc
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYD   58 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e   58 (307)
                      +..|++|+.|+|++|+|+.|+.  +..|++|++|+|++            .|++|++|+|.+|.+...+
T Consensus        72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~  140 (635)
T 4g8a_A           72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  140 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred             HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence            3455666666666666666643  55666666666664            3455555555555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.44  E-value=1.8e-07  Score=79.28  Aligned_cols=69  Identities=17%  Similarity=0.259  Sum_probs=49.5

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|.+|+.|+|++|+|+.+..  +..|++|++|+|++            .|++|++|+|.+|.|.....   .....+|
T Consensus        77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~  153 (220)
T 2v70_A           77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP---GAFDTLH  153 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT---TTTTTCT
T ss_pred             hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH---HHhcCCC
Confidence            5667788888888888887766  77788888888875            55778888888887776533   2234567


Q ss_pred             CCceec
Q 021827           70 NLCIFN   75 (307)
Q Consensus        70 ~L~yLD   75 (307)
                      +|++|+
T Consensus       154 ~L~~L~  159 (220)
T 2v70_A          154 SLSTLN  159 (220)
T ss_dssp             TCCEEE
T ss_pred             CCCEEE
Confidence            777665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.44  E-value=2.2e-07  Score=76.59  Aligned_cols=71  Identities=21%  Similarity=0.285  Sum_probs=53.4

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..+.+|+.|+|++|+|+.|..  +..+++|++|+|++            .+++|++|+|.+|.+...+.   .....+|
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~  124 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD---GVFDKLT  124 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCT
T ss_pred             hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH---hHhccCC
Confidence            4567888888888888888876  67888888888885            56788888888888876654   2334578


Q ss_pred             CCceecCc
Q 021827           70 NLCIFNAR   77 (307)
Q Consensus        70 ~L~yLDar   77 (307)
                      +|++|+-.
T Consensus       125 ~L~~L~l~  132 (208)
T 2o6s_A          125 QLKDLRLY  132 (208)
T ss_dssp             TCCEEECC
T ss_pred             cCCEEECC
Confidence            88877753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.44  E-value=2.6e-07  Score=80.83  Aligned_cols=69  Identities=23%  Similarity=0.350  Sum_probs=45.5

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      .+..+++|+.|+|++|.|+.+..+..|++|++|+|++          .+++|++|+|.+|.+...+.     ...+|+|+
T Consensus        61 ~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-----~~~l~~L~  135 (347)
T 4fmz_A           61 GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-----LANLTKMY  135 (347)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-----GTTCTTCC
T ss_pred             hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-----hccCCcee
Confidence            4556667777777777777766666777777777764          55677777777777766544     34566666


Q ss_pred             eecC
Q 021827           73 IFNA   76 (307)
Q Consensus        73 yLDa   76 (307)
                      +|+.
T Consensus       136 ~L~l  139 (347)
T 4fmz_A          136 SLNL  139 (347)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            6664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.43  E-value=2e-07  Score=76.81  Aligned_cols=66  Identities=23%  Similarity=0.293  Sum_probs=56.5

Q ss_pred             ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      .+|+.|+|++|+|+.|..  +..|++|++|+|++            .|++|++|+|.+|.|...+.   .....||+|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR---GAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCSE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCH---HHhccccCCCE
Confidence            679999999999999954  89999999999996            57899999999999997765   33456899998


Q ss_pred             ecC
Q 021827           74 FNA   76 (307)
Q Consensus        74 LDa   76 (307)
                      |+-
T Consensus       110 L~L  112 (174)
T 2r9u_A          110 IYL  112 (174)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.41  E-value=3.5e-07  Score=80.93  Aligned_cols=68  Identities=21%  Similarity=0.348  Sum_probs=38.2

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      .+..|++|+.|+|++|.|+.+..+..|++|++|+|++          .+++|++|+|.+|.+...+.     ...+|+|+
T Consensus        58 ~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~  132 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-----LAGLSNLQ  132 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-----GTTCTTCC
T ss_pred             hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-----hcCCCCCC
Confidence            3455566666666666666666666666666666664          44555555555555554432     23445555


Q ss_pred             eec
Q 021827           73 IFN   75 (307)
Q Consensus        73 yLD   75 (307)
                      +|+
T Consensus       133 ~L~  135 (308)
T 1h6u_A          133 VLY  135 (308)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.41  E-value=2.8e-07  Score=78.49  Aligned_cols=70  Identities=26%  Similarity=0.364  Sum_probs=46.2

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|++|+.|+|++|+|+.+..  +..|++|++|+|++            .+++|++|+|.+|.+...+.   .+...+|
T Consensus        55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~  131 (251)
T 3m19_A           55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS---GVFDRLT  131 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCT
T ss_pred             hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh---hHhccCC
Confidence            4566777777777777777665  66777777777775            45677777777777765543   2223466


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      +|++|+-
T Consensus       132 ~L~~L~L  138 (251)
T 3m19_A          132 KLKELRL  138 (251)
T ss_dssp             TCCEEEC
T ss_pred             cccEEEC
Confidence            6666653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.40  E-value=3.4e-07  Score=81.01  Aligned_cols=66  Identities=15%  Similarity=0.258  Sum_probs=36.6

Q ss_pred             ccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCceec
Q 021827            6 SVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN   75 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLD   75 (307)
                      .|.+|+.|+|++|.|+.++.+..|++|++|+|++          .|++|+.|+|.+|.+...+.     ...+|+|++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~  113 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA-----IAGLQSIKTLD  113 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG-----GTTCTTCCEEE
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh-----hcCCCCCCEEE
Confidence            3455666666666666665555566666666654          44556666666666555432     23455555555


Q ss_pred             C
Q 021827           76 A   76 (307)
Q Consensus        76 a   76 (307)
                      .
T Consensus       114 l  114 (308)
T 1h6u_A          114 L  114 (308)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.40  E-value=2.9e-07  Score=78.36  Aligned_cols=71  Identities=21%  Similarity=0.292  Sum_probs=51.2

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|.+|+.|+|++|+|+.+..  +..|++|++|+|++            .+++|+.|+|.+|.+...+.   .....+|
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~  155 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA---GAFDKLT  155 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCT
T ss_pred             hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH---HHcCcCc
Confidence            5667788888888888887763  67788888888875            46778888888888876554   2234567


Q ss_pred             CCceecCc
Q 021827           70 NLCIFNAR   77 (307)
Q Consensus        70 ~L~yLDar   77 (307)
                      +|++||-.
T Consensus       156 ~L~~L~L~  163 (251)
T 3m19_A          156 NLQTLSLS  163 (251)
T ss_dssp             TCCEEECC
T ss_pred             CCCEEECC
Confidence            77777743

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.40  E-value=3.1e-07  Score=75.65  Aligned_cols=67  Identities=22%  Similarity=0.230  Sum_probs=49.1

Q ss_pred             cccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            7 VVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      ..+|+.|+|++|+|+.+..  +..+++|++|+|++            .+++|++|+|.+|.+...+.   .+...+|+|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~  103 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN---GVFDKLTQLK  103 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCC
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH---hHhcCccCCC
Confidence            3568888888888887776  67788888888875            46788888888888876554   2334577888


Q ss_pred             eecC
Q 021827           73 IFNA   76 (307)
Q Consensus        73 yLDa   76 (307)
                      +|+-
T Consensus       104 ~L~L  107 (208)
T 2o6s_A          104 ELAL  107 (208)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            7774

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.39  E-value=3.1e-07  Score=82.79  Aligned_cols=52  Identities=23%  Similarity=0.289  Sum_probs=31.1

Q ss_pred             ccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827            6 SVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~   57 (307)
                      .|.+|+.|+|++|+|+.|..  +..|++|+.|+|++            .|++|+.|+|.+|.|...
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~  127 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV  127 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEE
Confidence            55666666666666666653  66666666666664            345555555555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.38  E-value=3.8e-07  Score=78.75  Aligned_cols=72  Identities=28%  Similarity=0.357  Sum_probs=48.4

Q ss_pred             cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827            3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL   68 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L   68 (307)
                      .+..|++|+.|+|++|.|+.+..  +..|++|++|+|++            .+++|++|+|.+|.+...+.   .+...+
T Consensus        80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l  156 (272)
T 3rfs_A           80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK---GVFDKL  156 (272)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTC
T ss_pred             hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH---HHhccC
Confidence            45667777777777777777766  67777777777775            45677777777777765543   223446


Q ss_pred             CCCceecCc
Q 021827           69 PNLCIFNAR   77 (307)
Q Consensus        69 P~L~yLDar   77 (307)
                      |+|++|+..
T Consensus       157 ~~L~~L~l~  165 (272)
T 3rfs_A          157 TNLTELDLS  165 (272)
T ss_dssp             TTCCEEECC
T ss_pred             ccCCEEECC
Confidence            666666643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.37  E-value=2.9e-07  Score=80.15  Aligned_cols=53  Identities=21%  Similarity=0.311  Sum_probs=27.3

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCc
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~   57 (307)
                      +..|++|+.|+|++|+|+.++.+.. ++|++|+|++          .|++|+.|+|.+|.+...
T Consensus        81 l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC
Confidence            3455555555555555555555444 5555555553          344455555555544443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.37  E-value=2.8e-07  Score=81.39  Aligned_cols=55  Identities=20%  Similarity=0.291  Sum_probs=31.1

Q ss_pred             ccccccCCeeeccC-cccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCcc
Q 021827            4 VTSVVSLRALILND-NEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYD   58 (307)
Q Consensus         4 L~~L~nL~aL~LS~-N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e   58 (307)
                      |..+++|+.|+|++ |.|+.|..  |..|++|+.|+|++            .|++|+.|+|.+|.+...+
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   96 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS   96 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence            34455566666664 66666553  55666666666664            4455555555555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.35  E-value=7.6e-07  Score=76.50  Aligned_cols=69  Identities=22%  Similarity=0.266  Sum_probs=38.0

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|++|+.|+|++|+|+.+..  +..+++|++|+|++            .+++|+.|+|.+|.+.....   .....+|
T Consensus       125 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~  201 (285)
T 1ozn_A          125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP---HAFRDLG  201 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCT
T ss_pred             hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH---hHccCcc
Confidence            3455666666666666666554  55666666666664            34556666666665554421   1122345


Q ss_pred             CCceec
Q 021827           70 NLCIFN   75 (307)
Q Consensus        70 ~L~yLD   75 (307)
                      +|++|+
T Consensus       202 ~L~~L~  207 (285)
T 1ozn_A          202 RLMTLY  207 (285)
T ss_dssp             TCCEEE
T ss_pred             cccEee
Confidence            555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.34  E-value=4.2e-07  Score=89.85  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=12.9

Q ss_pred             cccCCeeeccCcccccccCCCCCCCCCeEecc
Q 021827            7 VVSLRALILNDNEIVSICKLDQMKELNTLGMD   38 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS   38 (307)
                      |.+|+.|+|++|+|+.|+.|..|++|+.|+|+
T Consensus       108 l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls  139 (605)
T 1m9s_A          108 LKKLKSLSLEHNGISDINGLVHLPQLESLYLG  139 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGGGGGCTTCSEEECC
T ss_pred             CCCCCEEEecCCCCCCCccccCCCccCEEECC
Confidence            33344444444444444333344444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.33  E-value=9.5e-08  Score=94.41  Aligned_cols=70  Identities=26%  Similarity=0.413  Sum_probs=46.4

Q ss_pred             ccccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827            2 DDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL   71 (307)
Q Consensus         2 DeL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L   71 (307)
                      ..+..|++|+.|+|++|+|+.+..|..|++|+.|+|++          .|++|+.|+|.+|+|...+.     +..||+|
T Consensus       125 ~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L  199 (605)
T 1m9s_A          125 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-----LAGLKNL  199 (605)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-----GTTCTTC
T ss_pred             ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChH-----HccCCCC
Confidence            34566777777777777777777777777777777775          45666777777776665432     3345666


Q ss_pred             ceecC
Q 021827           72 CIFNA   76 (307)
Q Consensus        72 ~yLDa   76 (307)
                      +.|+.
T Consensus       200 ~~L~L  204 (605)
T 1m9s_A          200 DVLEL  204 (605)
T ss_dssp             SEEEC
T ss_pred             CEEEc
Confidence            66553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.33  E-value=4.2e-07  Score=84.10  Aligned_cols=67  Identities=24%  Similarity=0.243  Sum_probs=57.0

Q ss_pred             ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      .+++.|+|++|+|+.|..  +..|++|++|+|++            .|++|++|+|.+|.+...+.   ....-|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~---~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG---GGGTTCTTCCE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH---HHhcCCCCCCE
Confidence            379999999999999975  99999999999996            67999999999999988765   23456788888


Q ss_pred             ecCc
Q 021827           74 FNAR   77 (307)
Q Consensus        74 LDar   77 (307)
                      |+-.
T Consensus       129 L~Ls  132 (635)
T 4g8a_A          129 LVAV  132 (635)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            8743

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.32  E-value=5.7e-07  Score=77.34  Aligned_cols=71  Identities=21%  Similarity=0.287  Sum_probs=55.7

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|.+|+.|+|++|+|+.+..  +..|++|++|+|++            .+++|+.|+|.+|.+...+.   .....+|
T Consensus       105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~  181 (270)
T 2o6q_A          105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE---GAFDKLT  181 (270)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCT
T ss_pred             cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh---hHhccCC
Confidence            4667889999999999988876  78888999999886            56888899999998887655   2234578


Q ss_pred             CCceecCc
Q 021827           70 NLCIFNAR   77 (307)
Q Consensus        70 ~L~yLDar   77 (307)
                      +|++|+-.
T Consensus       182 ~L~~L~L~  189 (270)
T 2o6q_A          182 ELKTLKLD  189 (270)
T ss_dssp             TCCEEECC
T ss_pred             CcCEEECC
Confidence            88888754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.31  E-value=6.7e-07  Score=76.89  Aligned_cols=70  Identities=27%  Similarity=0.399  Sum_probs=38.5

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|++|+.|+|++|.|+.|..  +..|++|++|+|++            .+++|++|+|.+|.+...+.   .....+|
T Consensus        57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~  133 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP---RVFDSLT  133 (270)
T ss_dssp             SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT---TTTTTCT
T ss_pred             hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH---HHhCcCc
Confidence            4455566666666666665554  45566666666653            34556666666666555433   1223455


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      +|++|+-
T Consensus       134 ~L~~L~L  140 (270)
T 2o6q_A          134 KLTYLSL  140 (270)
T ss_dssp             TCCEEEC
T ss_pred             CCCEEEC
Confidence            5555553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.30  E-value=9.6e-07  Score=70.39  Aligned_cols=70  Identities=26%  Similarity=0.366  Sum_probs=45.2

Q ss_pred             cccccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      ..|++|+.|+|++|.|+.+..+..|++|++|+|++            .|++|++|+|.+|.+...+..  .....+|+|+
T Consensus        46 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~l~~l~~L~  123 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL--EPLKKLECLK  123 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGG--GGGSSCSCCC
T ss_pred             HhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhH--HHHhcCCCCC
Confidence            55667777777777777776677777777777765            367777777777777664421  1234567777


Q ss_pred             eecC
Q 021827           73 IFNA   76 (307)
Q Consensus        73 yLDa   76 (307)
                      +|+.
T Consensus       124 ~L~l  127 (168)
T 2ell_A          124 SLDL  127 (168)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.30  E-value=1.7e-06  Score=67.72  Aligned_cols=69  Identities=22%  Similarity=0.271  Sum_probs=58.7

Q ss_pred             ccccCCeeeccCcccc--cccC-CCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            6 SVVSLRALILNDNEIV--SICK-LDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         6 ~L~nL~aL~LS~N~Is--sIeg-Le~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      ...+|+.|+|++|.|+  .|+. +..+++|++|+|++          .+++|++|+|.+|.+....   ..+...+|+|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGL---EVLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCT---HHHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchH---HHHhhhCCCCC
Confidence            4578999999999999  8887 58999999999996          6799999999999998842   23556699999


Q ss_pred             eecCc
Q 021827           73 IFNAR   77 (307)
Q Consensus        73 yLDar   77 (307)
                      +|+-.
T Consensus        92 ~L~ls   96 (149)
T 2je0_A           92 HLNLS   96 (149)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            99854

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.28  E-value=1.8e-06  Score=71.41  Aligned_cols=56  Identities=25%  Similarity=0.345  Sum_probs=50.0

Q ss_pred             cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCcc
Q 021827            3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYD   58 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e   58 (307)
                      .+..|.+|+.|+|++|+|+.+..  +..|++|++|+|++            .|++|++|+|.+||+.-.-
T Consensus        73 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            46788999999999999999987  88999999999996            6789999999999997543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.28  E-value=1.3e-06  Score=70.36  Aligned_cols=70  Identities=21%  Similarity=0.270  Sum_probs=52.5

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..+.+|+.|+|++|+|+.|..  +..|++|++|+|++            .+++|++|+|.+|.+...+.   .+...+|
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~  124 (177)
T 2o6r_A           48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD---GIFDRLT  124 (177)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCT
T ss_pred             hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH---HHhcCCc
Confidence            4667888888888888888876  67888888888885            56788888888888876654   2334577


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      +|++|+-
T Consensus       125 ~L~~L~l  131 (177)
T 2o6r_A          125 SLQKIWL  131 (177)
T ss_dssp             TCCEEEC
T ss_pred             ccCEEEe
Confidence            7777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.27  E-value=9.5e-07  Score=73.72  Aligned_cols=53  Identities=26%  Similarity=0.387  Sum_probs=48.5

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE   56 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak   56 (307)
                      +..|.+|+.|+|++|+|+.|..  +..|++|++|+|++            .|++|+.|+|.+||+.-
T Consensus        74 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            6788999999999999999986  89999999999996            57899999999999954

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.26  E-value=1.1e-06  Score=81.39  Aligned_cols=70  Identities=24%  Similarity=0.359  Sum_probs=51.0

Q ss_pred             ccccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827            2 DDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL   71 (307)
Q Consensus         2 DeL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L   71 (307)
                      .++..|.+|+.|+|++|.|+.+..+..|++|++|+|++          .|++|++|+|.+|.+...+.     ...+|+|
T Consensus        62 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L  136 (466)
T 1o6v_A           62 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-----LKNLTNL  136 (466)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GTTCTTC
T ss_pred             cchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-----HcCCCCC
Confidence            45667778888888888888777777788888888875          56777777877777776654     3456777


Q ss_pred             ceecC
Q 021827           72 CIFNA   76 (307)
Q Consensus        72 ~yLDa   76 (307)
                      ++|+-
T Consensus       137 ~~L~l  141 (466)
T 1o6v_A          137 NRLEL  141 (466)
T ss_dssp             SEEEE
T ss_pred             CEEEC
Confidence            76664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.26  E-value=9.1e-07  Score=78.03  Aligned_cols=68  Identities=24%  Similarity=0.215  Sum_probs=35.6

Q ss_pred             cccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827            5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN   70 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~   70 (307)
                      ..|++|+.|+|++|+|+.+..  +..|++|++|+|++            .+++|+.|+|.+|.+...+.   .+...+|+
T Consensus        97 ~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~  173 (290)
T 1p9a_G           97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA---GLLNGLEN  173 (290)
T ss_dssp             TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT---TTTTTCTT
T ss_pred             ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH---HHhcCcCC
Confidence            344555555555555555532  55555555555553            34555566666665554433   22334555


Q ss_pred             Cceec
Q 021827           71 LCIFN   75 (307)
Q Consensus        71 L~yLD   75 (307)
                      |++|+
T Consensus       174 L~~L~  178 (290)
T 1p9a_G          174 LDTLL  178 (290)
T ss_dssp             CCEEE
T ss_pred             CCEEE
Confidence            65555

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.26  E-value=7.6e-07  Score=80.27  Aligned_cols=74  Identities=22%  Similarity=0.305  Sum_probs=55.6

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|.+|+.|+|++|+|+.|..  +..|++|++|+|++            .|++|+.|+|.+|.|...+...-.-...+|
T Consensus        84 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~  163 (361)
T 2xot_A           84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP  163 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CT
T ss_pred             ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCC
Confidence            5678889999999999988876  78888999999886            668889999999988877653211124588


Q ss_pred             CCceecCc
Q 021827           70 NLCIFNAR   77 (307)
Q Consensus        70 ~L~yLDar   77 (307)
                      +|++||-.
T Consensus       164 ~L~~L~L~  171 (361)
T 2xot_A          164 KLMLLDLS  171 (361)
T ss_dssp             TCCEEECC
T ss_pred             cCCEEECC
Confidence            88888753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.25  E-value=9.6e-07  Score=77.40  Aligned_cols=71  Identities=11%  Similarity=0.132  Sum_probs=45.5

Q ss_pred             ccccCCeeeccCcccccccC--CCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccchHHHHHHh
Q 021827            6 SVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDKLAKKVKTL   67 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~YrrKI~a~   67 (307)
                      .+.+|+.|+|++|+|+.+..  +..|++|++|+|++                .|++|++|+|.+|.+...+.....+...
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            46667777777777766542  55677777777764                3566777777777776554433344556


Q ss_pred             CCCCceecC
Q 021827           68 LPNLCIFNA   76 (307)
Q Consensus        68 LP~L~yLDa   76 (307)
                      +|+|++||-
T Consensus       223 l~~L~~L~L  231 (310)
T 4glp_A          223 GVQPHSLDL  231 (310)
T ss_dssp             TCCCSSEEC
T ss_pred             CCCCCEEEC
Confidence            677777764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.25  E-value=9e-07  Score=78.08  Aligned_cols=69  Identities=17%  Similarity=0.125  Sum_probs=41.8

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      +..|++|+.|+|++|+|+.|.....+++|++|+|++           .+++|+.|+|.+|.+...+.   .....+|+|+
T Consensus        51 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~---~~~~~l~~L~  127 (290)
T 1p9a_G           51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL---GALRGLGELQ  127 (290)
T ss_dssp             GTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS---STTTTCTTCC
T ss_pred             hhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH---HHHcCCCCCC
Confidence            455666777777777777766666666666666664           44566666666666655432   1223455565


Q ss_pred             eec
Q 021827           73 IFN   75 (307)
Q Consensus        73 yLD   75 (307)
                      +|+
T Consensus       128 ~L~  130 (290)
T 1p9a_G          128 ELY  130 (290)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.24  E-value=9e-07  Score=81.55  Aligned_cols=72  Identities=25%  Similarity=0.342  Sum_probs=56.1

Q ss_pred             cccccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827            3 DVTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL   68 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L   68 (307)
                      .+..|.+|+.|+|++|.|+.|.  .+..|++|++|+|++            .|++|++|+|.+|++...+.   .....+
T Consensus        94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l  170 (452)
T 3zyi_A           94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS---YAFNRV  170 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT---TTTTTC
T ss_pred             HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH---hHHhcC
Confidence            4567888999999999998886  388888899999886            47889999999999887654   234457


Q ss_pred             CCCceecCc
Q 021827           69 PNLCIFNAR   77 (307)
Q Consensus        69 P~L~yLDar   77 (307)
                      |+|++|+-.
T Consensus       171 ~~L~~L~l~  179 (452)
T 3zyi_A          171 PSLMRLDLG  179 (452)
T ss_dssp             TTCCEEECC
T ss_pred             CcccEEeCC
Confidence            777777754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.23  E-value=8.2e-07  Score=81.53  Aligned_cols=70  Identities=19%  Similarity=0.236  Sum_probs=52.8

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL   71 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L   71 (307)
                      +..|.+|+.|+|++|.|+.|+.+..+++|++|+|++            .+++|+.|+|.+|.+.....   .....+|+|
T Consensus       181 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L  257 (440)
T 3zyj_A          181 FEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER---NAFDNLQSL  257 (440)
T ss_dssp             TTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT---TSSTTCTTC
T ss_pred             hhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh---hhhcCCCCC
Confidence            556788888888888888888888888888888885            56778888888887776543   223456777


Q ss_pred             ceecC
Q 021827           72 CIFNA   76 (307)
Q Consensus        72 ~yLDa   76 (307)
                      ++||-
T Consensus       258 ~~L~L  262 (440)
T 3zyj_A          258 VEINL  262 (440)
T ss_dssp             CEEEC
T ss_pred             CEEEC
Confidence            77764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.23  E-value=9.4e-07  Score=79.96  Aligned_cols=71  Identities=24%  Similarity=0.234  Sum_probs=52.4

Q ss_pred             ccccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..+++|+.|+|++|+|+.+.  .+..|++|++|+|++            .+++|++|+|.+|.+.....   .....+|
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~  371 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD---QSFLGLP  371 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT---TTTTTCT
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh---hhccccc
Confidence            567788888888888888775  477888888888885            56888888888888866532   1234478


Q ss_pred             CCceecCc
Q 021827           70 NLCIFNAR   77 (307)
Q Consensus        70 ~L~yLDar   77 (307)
                      +|++|+-.
T Consensus       372 ~L~~L~L~  379 (455)
T 3v47_A          372 NLKELALD  379 (455)
T ss_dssp             TCCEEECC
T ss_pred             cccEEECC
Confidence            88887753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.23  E-value=1.5e-06  Score=76.52  Aligned_cols=69  Identities=14%  Similarity=0.196  Sum_probs=47.4

Q ss_pred             ccCCeeeccCccccccc--CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            8 VSLRALILNDNEIVSIC--KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      ++|+.|+|++|+|+.+.  .+..|++|++|+|++                .+++|++|+|.+|.+...+.....+...+|
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            66666777777666665  366777777777774                457777788888877765554455556677


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      +|++||-
T Consensus       229 ~L~~L~L  235 (312)
T 1wwl_A          229 QLQGLDL  235 (312)
T ss_dssp             CCSEEEC
T ss_pred             CCCEEEC
Confidence            8887774

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.22  E-value=9.5e-07  Score=81.09  Aligned_cols=72  Identities=25%  Similarity=0.355  Sum_probs=54.7

Q ss_pred             cccccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827            3 DVTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL   68 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L   68 (307)
                      .+..|.+|+.|+|++|.|+.|.  .+..|++|++|+|++            .|++|++|+|.+|++...+.   .....+
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l  159 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS---YAFNRI  159 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT---TTTTTC
T ss_pred             HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH---HHhhhC
Confidence            4567888888888888888876  378888888888885            56888889999998876654   233456


Q ss_pred             CCCceecCc
Q 021827           69 PNLCIFNAR   77 (307)
Q Consensus        69 P~L~yLDar   77 (307)
                      |+|++|+-.
T Consensus       160 ~~L~~L~l~  168 (440)
T 3zyj_A          160 PSLRRLDLG  168 (440)
T ss_dssp             TTCCEEECC
T ss_pred             cccCEeCCC
Confidence            777777753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.21  E-value=8.9e-07  Score=78.56  Aligned_cols=71  Identities=28%  Similarity=0.408  Sum_probs=36.5

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|++|+.|+|++|+|+.+..  +..|++|++|+|++            .+++|++|+|.+|++...+.  ......+|
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~~l~  149 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE--TSLFSHLT  149 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS--SCSCTTCT
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc--hhhhccCC
Confidence            4445555555555555555532  55555555555553            34555666666665554332  01123355


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      +|++|+.
T Consensus       150 ~L~~L~l  156 (353)
T 2z80_A          150 KLQILRV  156 (353)
T ss_dssp             TCCEEEE
T ss_pred             CCcEEEC
Confidence            5555553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.20  E-value=4.1e-07  Score=81.70  Aligned_cols=74  Identities=23%  Similarity=0.349  Sum_probs=48.5

Q ss_pred             cccccccCCeeeccCcccc-----cccC-CCCCCCCCeEeccc----------------C--CCCCceEEccCCCccCc-
Q 021827            3 DVTSVVSLRALILNDNEIV-----SICK-LDQMKELNTLGMDS----------------Y--FFNLNNLNLQGNPVAEY-   57 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~Is-----sIeg-Le~L~nL~TLdLS~----------------~--L~nLrtLnLeGNPIak~-   57 (307)
                      .+..+++|+.|+|++|.|+     .|.. |..+++|++|+|++                .  +++|++|+|.+|+|... 
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g  290 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  290 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence            4567778888888888873     3433 66777778888875                1  67777788888777652 


Q ss_pred             -cchHHHHHHhCCCCceecC
Q 021827           58 -DKLAKKVKTLLPNLCIFNA   76 (307)
Q Consensus        58 -e~YrrKI~a~LP~L~yLDa   76 (307)
                       ..+...+...+|+|++|+-
T Consensus       291 ~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          291 VRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             HHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHHHHHHhcCCCceEEEc
Confidence             1222333355777777763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.19  E-value=1.4e-06  Score=74.52  Aligned_cols=47  Identities=26%  Similarity=0.362  Sum_probs=22.8

Q ss_pred             CCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccC
Q 021827           10 LRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE   56 (307)
Q Consensus        10 L~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak   56 (307)
                      |+.|+|++|+|+.+.  .+..+++|++|+|++            .+++|++|+|.+|++..
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   90 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS   90 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence            555555555555444  244455555555543            33445555555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.19  E-value=1.5e-06  Score=74.70  Aligned_cols=72  Identities=18%  Similarity=0.182  Sum_probs=53.7

Q ss_pred             cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827            3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL   68 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L   68 (307)
                      .+..|++|+.|+|++|+|+.+..  +..|++|++|+|++            .+++|++|+|.+|.+...+.   .....+
T Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l  176 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE---RAFRGL  176 (285)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT---TTTTTC
T ss_pred             HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH---HHhcCc
Confidence            35667888888888888888754  77888888888885            56788888888888876554   223457


Q ss_pred             CCCceecCc
Q 021827           69 PNLCIFNAR   77 (307)
Q Consensus        69 P~L~yLDar   77 (307)
                      |+|++|+-.
T Consensus       177 ~~L~~L~l~  185 (285)
T 1ozn_A          177 HSLDRLLLH  185 (285)
T ss_dssp             TTCCEEECC
T ss_pred             cccCEEECC
Confidence            888887753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.19  E-value=1.4e-06  Score=85.21  Aligned_cols=69  Identities=19%  Similarity=0.236  Sum_probs=41.8

Q ss_pred             ccccccCCeeeccCcccccccC-CCCCCCCCeEeccc----------CCCCCceEEccCCCccCc--cchHHHHHHhCCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEY--DKLAKKVKTLLPN   70 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~--e~YrrKI~a~LP~   70 (307)
                      +..|++|+.|+|++|+|+.|+. +..|++|++|+|++          .|++|++|+|.+|.|...  +.    .+..||+
T Consensus       459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~----~l~~l~~  534 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQ----PLVSCPR  534 (567)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTG----GGGGCTT
T ss_pred             ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcH----HHhcCCC
Confidence            4556666666666666666643 66666666666664          456666666666666655  22    2344666


Q ss_pred             CceecC
Q 021827           71 LCIFNA   76 (307)
Q Consensus        71 L~yLDa   76 (307)
                      |++|+-
T Consensus       535 L~~L~L  540 (567)
T 1dce_A          535 LVLLNL  540 (567)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            666653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.17  E-value=1.5e-06  Score=80.13  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=54.7

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL   71 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L   71 (307)
                      +..|.+|+.|+|++|.|+.++.+..|++|++|+|++            .+++|+.|+|.+|.+.....   .....+|+|
T Consensus       192 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L  268 (452)
T 3zyi_A          192 FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER---NAFDGLASL  268 (452)
T ss_dssp             TTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT---TTTTTCTTC
T ss_pred             ccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH---HHhcCCCCC
Confidence            556788888888888888888888888888888885            66888888888888876543   223457888


Q ss_pred             ceecCc
Q 021827           72 CIFNAR   77 (307)
Q Consensus        72 ~yLDar   77 (307)
                      ++||-.
T Consensus       269 ~~L~L~  274 (452)
T 3zyi_A          269 VELNLA  274 (452)
T ss_dssp             CEEECC
T ss_pred             CEEECC
Confidence            887743

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.15  E-value=2.3e-06  Score=74.03  Aligned_cols=69  Identities=19%  Similarity=0.279  Sum_probs=38.5

Q ss_pred             cccccCCeeeccCccccc--cc-CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            5 TSVVSLRALILNDNEIVS--IC-KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~Iss--Ie-gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      ..+++|+.|+|++|.|+.  +. .+..+++|++|+|++            .+++|+.|+|.+|.+...+..   ....+|
T Consensus       147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~  223 (306)
T 2z66_A          147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF---PYKCLN  223 (306)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG---GGTTCT
T ss_pred             ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh---hccCcc
Confidence            445556666666666653  22 255566666666654            446666666666666554431   123456


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      +|++||-
T Consensus       224 ~L~~L~L  230 (306)
T 2z66_A          224 SLQVLDY  230 (306)
T ss_dssp             TCCEEEC
T ss_pred             cCCEeEC
Confidence            6666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.14  E-value=1e-07  Score=78.68  Aligned_cols=69  Identities=23%  Similarity=0.288  Sum_probs=50.8

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL   71 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L   71 (307)
                      .+..|++|+.|+|++|+|+.|+.+..|++|++|+|++           .+++|++|+|.+|.+...+.     ...+|+|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~-----~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG-----IEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHH-----HHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCc-----cccCCCC
Confidence            3567788999999999999888888888999999886           34677777777777766432     3345666


Q ss_pred             ceecC
Q 021827           72 CIFNA   76 (307)
Q Consensus        72 ~yLDa   76 (307)
                      ++|+-
T Consensus       118 ~~L~l  122 (198)
T 1ds9_A          118 RVLYM  122 (198)
T ss_dssp             SEEEE
T ss_pred             CEEEC
Confidence            66653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.13  E-value=2.6e-06  Score=72.88  Aligned_cols=70  Identities=23%  Similarity=0.200  Sum_probs=42.3

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..+++|+.|+|++|+|+.|..  +..|++|++|+|++            .+++|++|+|.+|.+...+..   ....+|
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~  124 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF---PIGHLK  124 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC---CCTTCT
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch---hcccCC
Confidence            4556677777777777776664  66677777777764            445666666666666554331   123455


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      +|++|+-
T Consensus       125 ~L~~L~l  131 (276)
T 2z62_A          125 TLKELNV  131 (276)
T ss_dssp             TCCEEEC
T ss_pred             CCCEEEC
Confidence            6665553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.13  E-value=1.7e-06  Score=74.78  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=37.2

Q ss_pred             ccccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827            4 VTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~   57 (307)
                      +..+++|+.|+|++|+|+.+.  .+..+++|++|+|++            .+++|+.|+|.+|++...
T Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            456677777777777777762  366777777777775            456777777777777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.13  E-value=4.7e-06  Score=73.03  Aligned_cols=71  Identities=21%  Similarity=0.290  Sum_probs=49.3

Q ss_pred             ccccccCCeeeccCccccccc--CCCCCCCCCeEeccc---------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            4 VTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      +..|++|++|+|++|.|+.+.  .+..|++|++|+|++         .+++|++|+|.+|.+.....   .....+|+|+
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~  148 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK---SVFNGLNQMI  148 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCH---HHHTTCTTCC
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCH---hHhcCCcccc
Confidence            556777777777777777772  377777777777775         33677777777777776543   3455677888


Q ss_pred             eecCc
Q 021827           73 IFNAR   77 (307)
Q Consensus        73 yLDar   77 (307)
                      +|+..
T Consensus       149 ~L~l~  153 (330)
T 1xku_A          149 VVELG  153 (330)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            77643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.12  E-value=2.2e-06  Score=76.72  Aligned_cols=69  Identities=19%  Similarity=0.194  Sum_probs=37.1

Q ss_pred             cccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            5 TSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      ..|++|+.|+|++|+|+.|+. +..|++|++|+|++           .|++|+.|+|.+|++.....   .....+|+|+
T Consensus       180 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p---~~~~~l~~L~  256 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP---PIFGGRAPLK  256 (328)
T ss_dssp             EESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC---CCTTCCCCCC
T ss_pred             ccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH---HHhcCCCCCC
Confidence            346666666666666665543 55566666666654           44556666666655544321   0122345555


Q ss_pred             eecC
Q 021827           73 IFNA   76 (307)
Q Consensus        73 yLDa   76 (307)
                      +|+-
T Consensus       257 ~L~L  260 (328)
T 4fcg_A          257 RLIL  260 (328)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            5543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.11  E-value=2.1e-06  Score=75.64  Aligned_cols=52  Identities=27%  Similarity=0.287  Sum_probs=24.9

Q ss_pred             ccccCCeeeccCcccccccC--C-CCCCCCCeEeccc----------CCCCCceEEccCCCccCc
Q 021827            6 SVVSLRALILNDNEIVSICK--L-DQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIeg--L-e~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~   57 (307)
                      .+++|+.|+|++|.|+.+..  + ..|++|++|+|++          .+++|++|+|.+|.+...
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l  206 (317)
T 3o53_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM  206 (317)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE
T ss_pred             ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcc
Confidence            34455555555555554321  2 2345555555553          245555555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.11  E-value=2.2e-06  Score=76.83  Aligned_cols=69  Identities=22%  Similarity=0.186  Sum_probs=44.4

Q ss_pred             cccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827            5 TSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN   70 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~   70 (307)
                      ..|++|+.|+|++|.|+.+.  .+..|++|++|+|++            .+++|++|+|.+|.+...+.   .+...+|+
T Consensus        66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~  142 (390)
T 3o6n_A           66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR---GIFHNTPK  142 (390)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTT
T ss_pred             cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH---HHhcCCCC
Confidence            45667777777777777664  366777777777764            45667777777777765544   22344666


Q ss_pred             CceecC
Q 021827           71 LCIFNA   76 (307)
Q Consensus        71 L~yLDa   76 (307)
                      |++|+-
T Consensus       143 L~~L~L  148 (390)
T 3o6n_A          143 LTTLSM  148 (390)
T ss_dssp             CCEEEC
T ss_pred             CcEEEC
Confidence            666664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.10  E-value=4.6e-06  Score=74.79  Aligned_cols=70  Identities=13%  Similarity=0.144  Sum_probs=41.8

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|.+|+.|+|++|.|+.+..  +..|++|++|+|++            .+++|++|+|.+|++...+.   .....+|
T Consensus        89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~  165 (390)
T 3o6n_A           89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED---DTFQATT  165 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT---TTTSSCT
T ss_pred             ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh---hhccCCC
Confidence            4556667777777777766643  56666677777664            35666666666666655433   1223456


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      +|++|+-
T Consensus       166 ~L~~L~l  172 (390)
T 3o6n_A          166 SLQNLQL  172 (390)
T ss_dssp             TCCEEEC
T ss_pred             CCCEEEC
Confidence            6666553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.09  E-value=2.9e-06  Score=76.21  Aligned_cols=74  Identities=18%  Similarity=0.138  Sum_probs=46.9

Q ss_pred             ccccccCCeeeccCcccc------ccc-CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccch
Q 021827            4 VTSVVSLRALILNDNEIV------SIC-KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDKL   60 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~Is------sIe-gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~Y   60 (307)
                      +..+++|+.|+|++|+|+      .++ .|..+++|++|+|++                .+++|+.|+|.+|+|......
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            445677777777777777      344 566777777777775                557777777777777654221


Q ss_pred             -HHHHHHh--CCCCceecCc
Q 021827           61 -AKKVKTL--LPNLCIFNAR   77 (307)
Q Consensus        61 -rrKI~a~--LP~L~yLDar   77 (307)
                       ....+..  +|+|++|+-.
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~  282 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQ  282 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECC
T ss_pred             HHHHHHhhccCCCeEEEECc
Confidence             1122222  6777777643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.09  E-value=2.9e-06  Score=76.75  Aligned_cols=66  Identities=20%  Similarity=0.307  Sum_probs=37.2

Q ss_pred             ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      .+|+.|+|++|.|+.+..  +..+++|++|+|++            .+++|++|+|.+|.+.....   .....+|+|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~  351 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS---RMFENLDKLEV  351 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG---GGGTTCTTCCE
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh---hHhcCcccCCE
Confidence            456666666666665432  55666666666664            44666666666666654422   12234566666


Q ss_pred             ecC
Q 021827           74 FNA   76 (307)
Q Consensus        74 LDa   76 (307)
                      ||-
T Consensus       352 L~L  354 (455)
T 3v47_A          352 LDL  354 (455)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.09  E-value=2.8e-06  Score=77.93  Aligned_cols=54  Identities=28%  Similarity=0.402  Sum_probs=29.0

Q ss_pred             ccccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827            4 VTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~   57 (307)
                      +..|.+|+.|+|++|.|+.+.  .+..|++|++|+|++            .+++|++|+|.+|.+...
T Consensus        52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~  119 (477)
T 2id5_A           52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL  119 (477)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred             ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC
Confidence            445555666666666665552  255555555555553            335555555555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.08  E-value=3.2e-06  Score=74.37  Aligned_cols=70  Identities=23%  Similarity=0.286  Sum_probs=42.2

Q ss_pred             ccccccCCeeeccCcccccc--cCCCCCCCCCeEeccc---------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            4 VTSVVSLRALILNDNEIVSI--CKLDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssI--egLe~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      +..|++|+.|+|++|+|+.+  ..+..|++|++|+|++         .+++|++|+|.+|.+...+.   .....+|+|+
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~  150 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPK---GVFSGLRNMN  150 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCS---GGGSSCSSCC
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCH---hHhCCCccCC
Confidence            45566666666666666666  2366666666666664         22566666777666665443   2234567777


Q ss_pred             eecC
Q 021827           73 IFNA   76 (307)
Q Consensus        73 yLDa   76 (307)
                      +|+.
T Consensus       151 ~L~l  154 (332)
T 2ft3_A          151 CIEM  154 (332)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.08  E-value=4e-06  Score=78.98  Aligned_cols=53  Identities=28%  Similarity=0.370  Sum_probs=28.6

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCCeEeccc---------CCCCCceEEccCCCccCc
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~   57 (307)
                      +..|++|+.|+|++|+|+.|+ +..|++|++|+|++         .|++|++|+|.+|.+...
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l  121 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL  121 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCC
T ss_pred             hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCee
Confidence            344555555555555555553 55555555555554         345555555555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.07  E-value=2.5e-06  Score=78.99  Aligned_cols=73  Identities=25%  Similarity=0.250  Sum_probs=53.2

Q ss_pred             cccccccCCeeeccCccccccc--CCCCCCCCCeEeccc---------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827            3 DVTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL   71 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L   71 (307)
                      .+..|++|+.|+|++|+|+.+.  .+..|++|++|+|++         .+++|++|+|.+|.+...+-  ......|++|
T Consensus        40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N~l~~~~~--p~~~~~l~~L  117 (520)
T 2z7x_B           40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPI--CKEFGNMSQL  117 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSSCCSSCCC--CGGGGGCTTC
T ss_pred             hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCCccccccc--hhhhccCCcc
Confidence            3567788888888888888873  488888888888886         56888888888888876321  0123457888


Q ss_pred             ceecCc
Q 021827           72 CIFNAR   77 (307)
Q Consensus        72 ~yLDar   77 (307)
                      ++||-.
T Consensus       118 ~~L~L~  123 (520)
T 2z7x_B          118 KFLGLS  123 (520)
T ss_dssp             CEEEEE
T ss_pred             eEEEec
Confidence            877743

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.07  E-value=2.1e-06  Score=76.80  Aligned_cols=69  Identities=19%  Similarity=0.271  Sum_probs=38.6

Q ss_pred             ccccccCCeeeccCcccccccC-CCCCCCCCeEeccc------------C---------CCCCceEEccCCCccCccchH
Q 021827            4 VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS------------Y---------FFNLNNLNLQGNPVAEYDKLA   61 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~------------~---------L~nLrtLnLeGNPIak~e~Yr   61 (307)
                      +..|.+|+.|+|++|.|+.|+. +..|++|++|+|++            .         +++|++|+|.+|.+...+.. 
T Consensus       123 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-  201 (328)
T 4fcg_A          123 MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-  201 (328)
T ss_dssp             GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-
T ss_pred             HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-
Confidence            4455556666666666655542 55555566666553            1         56666666666666644431 


Q ss_pred             HHHHHhCCCCceecC
Q 021827           62 KKVKTLLPNLCIFNA   76 (307)
Q Consensus        62 rKI~a~LP~L~yLDa   76 (307)
                         ...+|+|++|+-
T Consensus       202 ---l~~l~~L~~L~L  213 (328)
T 4fcg_A          202 ---IANLQNLKSLKI  213 (328)
T ss_dssp             ---GGGCTTCCEEEE
T ss_pred             ---hcCCCCCCEEEc
Confidence               344566666653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.06  E-value=3.1e-06  Score=77.68  Aligned_cols=54  Identities=22%  Similarity=0.358  Sum_probs=36.3

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~   57 (307)
                      +..|.+|+.|+|++|+|+.|..  +..|++|++|+|++            .+++|+.|+|.+|.+...
T Consensus        76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  143 (477)
T 2id5_A           76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI  143 (477)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred             hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence            4567777777777777777764  66777777777774            445666666666655443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.06  E-value=2.6e-06  Score=78.99  Aligned_cols=72  Identities=26%  Similarity=0.356  Sum_probs=47.4

Q ss_pred             cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827            3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL   68 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L   68 (307)
                      .+..|++|++|+|++|+|+.+..  +..|++|++|+|++            .|++|++|+|.+|++......  .....+
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~l  122 (549)
T 2z81_A           45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT--SLFPNL  122 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS--CSCTTC
T ss_pred             hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh--hhhhcc
Confidence            35667777777777777777763  77777777777775            567777788877777643110  122346


Q ss_pred             CCCceecC
Q 021827           69 PNLCIFNA   76 (307)
Q Consensus        69 P~L~yLDa   76 (307)
                      |+|++|+-
T Consensus       123 ~~L~~L~L  130 (549)
T 2z81_A          123 TNLQTLRI  130 (549)
T ss_dssp             TTCCEEEE
T ss_pred             CCccEEEC
Confidence            66666664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.06  E-value=6.2e-06  Score=73.16  Aligned_cols=67  Identities=24%  Similarity=0.283  Sum_probs=58.9

Q ss_pred             ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      .+|+.|+|++|+|+.|..  +..|++|++|+|++            .+++|++|+|.+|.+...+.   .....+|+|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS---SWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH---HHHTTCTTCSE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH---hHhCCCccCCE
Confidence            479999999999999987  99999999999996            66999999999999997665   44567999999


Q ss_pred             ecCc
Q 021827           74 FNAR   77 (307)
Q Consensus        74 LDar   77 (307)
                      |+-.
T Consensus       129 L~L~  132 (353)
T 2z80_A          129 LNLL  132 (353)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            9864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.06  E-value=3.8e-06  Score=79.34  Aligned_cols=73  Identities=23%  Similarity=0.195  Sum_probs=53.8

Q ss_pred             cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc---------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827            3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL   71 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L   71 (307)
                      .+..|++|+.|+|++|+|+.|..  +..|++|++|+|++         .+++|++|+|.+|.+...+.  ......+++|
T Consensus        71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~--p~~~~~l~~L  148 (562)
T 3a79_B           71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPV--CKEFGNLTKL  148 (562)
T ss_dssp             GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCC--CGGGGGCTTC
T ss_pred             hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCCCccccCc--hHhhcccCcc
Confidence            46677888888888888888743  78888888888886         56788888888888876431  0123457888


Q ss_pred             ceecCc
Q 021827           72 CIFNAR   77 (307)
Q Consensus        72 ~yLDar   77 (307)
                      ++|+-.
T Consensus       149 ~~L~L~  154 (562)
T 3a79_B          149 TFLGLS  154 (562)
T ss_dssp             CEEEEE
T ss_pred             cEEecC
Confidence            887744

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.04  E-value=1.9e-06  Score=75.99  Aligned_cols=53  Identities=19%  Similarity=0.305  Sum_probs=33.9

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCCeEeccc-------CCCCCceEEccCCCccC
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------YFFNLNNLNLQGNPVAE   56 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------~L~nLrtLnLeGNPIak   56 (307)
                      +..|++|+.|+|++|+|+.+..+..|++|++|+|++       .+++|++|+|.+|.+..
T Consensus        54 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~  113 (317)
T 3o53_A           54 LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR  113 (317)
T ss_dssp             HTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSE
T ss_pred             hhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCC
Confidence            456677777777777777666677777777777775       23444444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.02  E-value=5.7e-06  Score=76.48  Aligned_cols=54  Identities=24%  Similarity=0.369  Sum_probs=31.4

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCc
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~   57 (307)
                      +..+++|+.|+|++|+|+.+..+..|++|+.|+|++          .+++|+.|+|.+|++...
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc
Confidence            345556666666666666665566666666666654          445555555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.02  E-value=4.7e-06  Score=77.14  Aligned_cols=33  Identities=30%  Similarity=0.330  Sum_probs=14.7

Q ss_pred             ccccCCeeeccCcccccccC--CCCCCCCCeEecc
Q 021827            6 SVVSLRALILNDNEIVSICK--LDQMKELNTLGMD   38 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS   38 (307)
                      .|++|+.|+|++|+|+.|..  +..|++|++|+|+
T Consensus        50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~   84 (570)
T 2z63_A           50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT   84 (570)
T ss_dssp             TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence            34444444444444444432  4444444444444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.02  E-value=3.7e-06  Score=80.71  Aligned_cols=69  Identities=22%  Similarity=0.186  Sum_probs=41.3

Q ss_pred             cccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827            5 TSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN   70 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~   70 (307)
                      ..|++|+.|+|++|.|+.+.  .+..|++|++|+|++            .|++|++|+|.+|.+...+.   .+...+|+
T Consensus        72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~  148 (597)
T 3oja_B           72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR---GIFHNTPK  148 (597)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTT
T ss_pred             ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH---HHhccCCC
Confidence            34566666777776666665  366666666666664            45666666666666665443   22334566


Q ss_pred             CceecC
Q 021827           71 LCIFNA   76 (307)
Q Consensus        71 L~yLDa   76 (307)
                      |++|+-
T Consensus       149 L~~L~L  154 (597)
T 3oja_B          149 LTTLSM  154 (597)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            666653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.02  E-value=4.5e-06  Score=78.51  Aligned_cols=68  Identities=24%  Similarity=0.264  Sum_probs=32.2

Q ss_pred             cccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCc--cchHHHHHHhC
Q 021827            5 TSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY--DKLAKKVKTLL   68 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~--e~YrrKI~a~L   68 (307)
                      ..|.+|++|+|++|.|+.+.  .+..|++|++|+|++            .+++|++|+|.+|.+...  +.    ....|
T Consensus        77 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l  152 (606)
T 3vq2_A           77 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA----YFSNL  152 (606)
T ss_dssp             TTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG----GGGTC
T ss_pred             hchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH----hHhhc
Confidence            34444444555544444441  244444455554443            345555555555555431  22    22345


Q ss_pred             CCCceecC
Q 021827           69 PNLCIFNA   76 (307)
Q Consensus        69 P~L~yLDa   76 (307)
                      |+|++|+-
T Consensus       153 ~~L~~L~L  160 (606)
T 3vq2_A          153 TNLVHVDL  160 (606)
T ss_dssp             TTCCEEEC
T ss_pred             CCCCEEEc
Confidence            66666653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.01  E-value=2.8e-06  Score=85.19  Aligned_cols=53  Identities=26%  Similarity=0.397  Sum_probs=33.8

Q ss_pred             ccccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCccC
Q 021827            4 VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAE   56 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak   56 (307)
                      |..|.+|+.|+|++|.|+.|+. |..|++|++|+|++           .|++|++|+|.+|++..
T Consensus       266 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          266 IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             GGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             hhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            4556666666666666666643 56666666666664           55667777777777664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.01  E-value=3.7e-06  Score=79.19  Aligned_cols=68  Identities=22%  Similarity=0.278  Sum_probs=60.2

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCCeEeccc---------CCCCCceEEccCCCccCccchHHHHHHhCCCCcee
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF   74 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yL   74 (307)
                      +..|++|+.|+|++|.|+.++.+..|++|++|+|++         .+++|++|+|.+|.+...+      ...+|+|++|
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~l~~L~~L  111 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD------VTPLTKLTYL  111 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC------CTTCTTCCEE
T ss_pred             hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee------cCCCCcCCEE
Confidence            467899999999999999999999999999999997         6799999999999998864      3568888888


Q ss_pred             cCc
Q 021827           75 NAR   77 (307)
Q Consensus        75 Dar   77 (307)
                      |..
T Consensus       112 ~L~  114 (457)
T 3bz5_A          112 NCD  114 (457)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.01  E-value=7.3e-06  Score=78.71  Aligned_cols=69  Identities=19%  Similarity=0.155  Sum_probs=48.1

Q ss_pred             cccccccCCeeeccCcccccc--cCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            3 DVTSVVSLRALILNDNEIVSI--CKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssI--egLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      .+..|++|+.|+|++|.|+.+  ..+..|++|++|+|++           .|++|+.|+|.+|++...+...    ..+|
T Consensus       249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~l~  324 (597)
T 3oja_B          249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ----PQFD  324 (597)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH----HHHT
T ss_pred             hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCccc----ccCC
Confidence            356677888888888888776  3477778888888875           4678888888888887665432    3345


Q ss_pred             CCceec
Q 021827           70 NLCIFN   75 (307)
Q Consensus        70 ~L~yLD   75 (307)
                      +|++|+
T Consensus       325 ~L~~L~  330 (597)
T 3oja_B          325 RLENLY  330 (597)
T ss_dssp             TCSEEE
T ss_pred             CCCEEE
Confidence            555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.00  E-value=4.7e-06  Score=78.39  Aligned_cols=53  Identities=19%  Similarity=0.196  Sum_probs=30.6

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE   56 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak   56 (307)
                      +..|++|++|+|++|+|+.|..  +..|++|++|+|++            .+++|++|+|.+|.+..
T Consensus        53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~  119 (606)
T 3t6q_A           53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS  119 (606)
T ss_dssp             STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred             hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence            4555666666666666665532  56666666666664            34555555555555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.99  E-value=8e-06  Score=76.83  Aligned_cols=70  Identities=19%  Similarity=0.256  Sum_probs=41.7

Q ss_pred             ccccccCCeeeccCccccc--ccC-CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827            4 VTSVVSLRALILNDNEIVS--ICK-LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL   68 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~Iss--Ieg-Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L   68 (307)
                      +..|++|+.|+|++|.|+.  ++. +..|++|++|+|++            .+++|++|+|.+|++.....   .....+
T Consensus       444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l  520 (606)
T 3vq2_A          444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS---SHYNQL  520 (606)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG---GGTTTC
T ss_pred             hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH---HHccCC
Confidence            4556667777777777664  333 56666777777664            45666666666666665422   122345


Q ss_pred             CCCceecC
Q 021827           69 PNLCIFNA   76 (307)
Q Consensus        69 P~L~yLDa   76 (307)
                      |+|++||-
T Consensus       521 ~~L~~L~l  528 (606)
T 3vq2_A          521 YSLSTLDC  528 (606)
T ss_dssp             TTCCEEEC
T ss_pred             CcCCEEEC
Confidence            66666553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.99  E-value=1.3e-05  Score=70.68  Aligned_cols=57  Identities=21%  Similarity=0.271  Sum_probs=48.6

Q ss_pred             cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccc
Q 021827            3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~   59 (307)
                      .+..|.+|+.|+|++|+|+.|..  +..|++|+.|+|++           ....|+.|+|.+||+.-.-.
T Consensus        51 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            46789999999999999999975  78999999999997           22339999999999976544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.99  E-value=4.4e-06  Score=79.14  Aligned_cols=66  Identities=24%  Similarity=0.204  Sum_probs=37.6

Q ss_pred             ccccCCeeeccCcccccccCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCCcee
Q 021827            6 SVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF   74 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yL   74 (307)
                      .|++|+.|+|++|.|+.+..+..|++|++|+|++           .+++|+.|+|.+|++...+..    ...+|+|++|
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----l~~l~~L~~L  242 (487)
T 3oja_A          167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA----LRFSQNLEHF  242 (487)
T ss_dssp             GTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT----CCCCTTCCEE
T ss_pred             hCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchh----hccCCCCCEE
Confidence            4566666666666666666665666666666664           345566666666665544331    2334555554


Q ss_pred             c
Q 021827           75 N   75 (307)
Q Consensus        75 D   75 (307)
                      +
T Consensus       243 ~  243 (487)
T 3oja_A          243 D  243 (487)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.96  E-value=3.7e-06  Score=74.33  Aligned_cols=70  Identities=20%  Similarity=0.262  Sum_probs=39.4

Q ss_pred             cccccccCCeeeccC-cccc-cccC-CCCCCCCCeEeccc------------CCCCCceEEccCCCccC-ccchHHHHHH
Q 021827            3 DVTSVVSLRALILND-NEIV-SICK-LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE-YDKLAKKVKT   66 (307)
Q Consensus         3 eL~~L~nL~aL~LS~-N~Is-sIeg-Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak-~e~YrrKI~a   66 (307)
                      .+..|++|+.|+|++ |.|+ .|+. +..|++|++|+|++            .+++|++|+|.+|.+.. .+.    ...
T Consensus        71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~  146 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP----SIS  146 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG----GGG
T ss_pred             hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh----HHh
Confidence            345566666666663 6555 3332 56666666666664            45666666666666653 222    123


Q ss_pred             hCCCCceecC
Q 021827           67 LLPNLCIFNA   76 (307)
Q Consensus        67 ~LP~L~yLDa   76 (307)
                      .+|+|++|+-
T Consensus       147 ~l~~L~~L~L  156 (313)
T 1ogq_A          147 SLPNLVGITF  156 (313)
T ss_dssp             GCTTCCEEEC
T ss_pred             cCCCCCeEEC
Confidence            4566666653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.95  E-value=1.3e-05  Score=76.72  Aligned_cols=69  Identities=26%  Similarity=0.317  Sum_probs=40.5

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHH-hC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKT-LL   68 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a-~L   68 (307)
                      +..|.+|+.|+|++|+|+.|+.  +..|++|++|+|++            .+++|+.|+|.+|.+...+.   .... .+
T Consensus       532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~  608 (680)
T 1ziw_A          532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK---KVFGPAF  608 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH---HHHHHHH
T ss_pred             hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh---hHhcccc
Confidence            3455666666666666666654  56666666666664            34666666666666665544   1222 45


Q ss_pred             CCCceec
Q 021827           69 PNLCIFN   75 (307)
Q Consensus        69 P~L~yLD   75 (307)
                      |+|++++
T Consensus       609 ~~L~~l~  615 (680)
T 1ziw_A          609 RNLTELD  615 (680)
T ss_dssp             TTCSEEE
T ss_pred             cccCEEE
Confidence            6666655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.92  E-value=7.7e-06  Score=71.64  Aligned_cols=55  Identities=16%  Similarity=0.146  Sum_probs=30.5

Q ss_pred             cccccCCeeeccCcccccccC-----CCCCCCCCeEeccc------------C---CCCCceEEccCCCccCccc
Q 021827            5 TSVVSLRALILNDNEIVSICK-----LDQMKELNTLGMDS------------Y---FFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIeg-----Le~L~nL~TLdLS~------------~---L~nLrtLnLeGNPIak~e~   59 (307)
                      ..|++|++|+|++|+|+.+..     +..+++|++|+|++            .   +++|++|+|.+|.+...+.
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~  268 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK  268 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh
Confidence            345566666666666655544     24455666666654            1   1456666666666654433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.92  E-value=1.1e-05  Score=74.71  Aligned_cols=52  Identities=15%  Similarity=0.198  Sum_probs=40.4

Q ss_pred             ccccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827            6 SVVSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~   57 (307)
                      .|++|+.|+|++|+|+.|+....+++|++|+|++            .+++|+.|+|.+||+.-.
T Consensus       449 ~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          449 FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             CCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred             cCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence            5777888888888888887777788888888875            567788888888887544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.91  E-value=8.3e-06  Score=75.48  Aligned_cols=67  Identities=18%  Similarity=0.105  Sum_probs=56.8

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      .+..|++|+.|+|++|+|+.|+.. .|++|++|+|++             .|++|++|+|.+|.+...      ....++
T Consensus        64 ~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~------~~~~l~  136 (520)
T 2z7x_B           64 VFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS------SVLPIA  136 (520)
T ss_dssp             GGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG------GGGGGT
T ss_pred             HhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh------hccccc
Confidence            467899999999999999999988 999999999996             678999999999999762      234567


Q ss_pred             CC--ceecC
Q 021827           70 NL--CIFNA   76 (307)
Q Consensus        70 ~L--~yLDa   76 (307)
                      +|  ++|+-
T Consensus       137 ~L~L~~L~l  145 (520)
T 2z7x_B          137 HLNISKVLL  145 (520)
T ss_dssp             TSCEEEEEE
T ss_pred             cceeeEEEe
Confidence            77  77764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.90  E-value=9.9e-06  Score=76.73  Aligned_cols=37  Identities=24%  Similarity=0.417  Sum_probs=24.8

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS   39 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~   39 (307)
                      .+..|++|+.|+|++|.|+.+..+..|++|++|+|++
T Consensus        53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~   89 (487)
T 3oja_A           53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN   89 (487)
T ss_dssp             GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCS
T ss_pred             HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecC
Confidence            3456667777777777776655566777777777765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.90  E-value=1.1e-05  Score=74.74  Aligned_cols=70  Identities=19%  Similarity=0.206  Sum_probs=42.9

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL   68 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L   68 (307)
                      +..|++|+.|+|++|.|+.+..  +..|++|++|+|++             .+++|++|+|.+|.+.....   .....+
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l  493 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP---TAFNSL  493 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT---TTTTTC
T ss_pred             hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh---hhhhcc
Confidence            4566677777777777765432  56667777777764             45667777777776665422   112346


Q ss_pred             CCCceecC
Q 021827           69 PNLCIFNA   76 (307)
Q Consensus        69 P~L~yLDa   76 (307)
                      |+|++|+-
T Consensus       494 ~~L~~L~l  501 (570)
T 2z63_A          494 SSLQVLNM  501 (570)
T ss_dssp             TTCCEEEC
T ss_pred             cCCCEEeC
Confidence            66666664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.89  E-value=7.9e-06  Score=72.24  Aligned_cols=68  Identities=21%  Similarity=0.179  Sum_probs=41.4

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccC-ccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAE-YDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak-~e~YrrKI~a~LP   69 (307)
                      +..+. |+.|+|++|.|+.+..  +..+++|++|+|++           .+++|+.|+|.+|.+.. .+.    ....+|
T Consensus       194 ~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~  268 (313)
T 1ogq_A          194 FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ----GLTQLK  268 (313)
T ss_dssp             GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG----GGGGCT
T ss_pred             HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh----HHhcCc
Confidence            34444 7777777777764322  56677777777765           45677777777777763 232    234566


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      +|++||-
T Consensus       269 ~L~~L~L  275 (313)
T 1ogq_A          269 FLHSLNV  275 (313)
T ss_dssp             TCCEEEC
T ss_pred             CCCEEEC
Confidence            7766653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.88  E-value=7.8e-06  Score=71.88  Aligned_cols=53  Identities=19%  Similarity=0.230  Sum_probs=26.9

Q ss_pred             cccccCCeeeccCcccccccCC-----CCCCCCCeEeccc-------------CCCCCceEEccCCCccCc
Q 021827            5 TSVVSLRALILNDNEIVSICKL-----DQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegL-----e~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~   57 (307)
                      ..+++|+.|+|++|+|+.+..+     ..|++|++|+|++             .+++|++|+|.+|.+...
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i  268 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV  268 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence            4455555556655555533321     2345555555553             234555555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.87  E-value=1.2e-05  Score=75.82  Aligned_cols=64  Identities=19%  Similarity=0.276  Sum_probs=57.4

Q ss_pred             ccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            8 VSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      .+|+.|+|++|.|+.+.  .+..|++|++|+|++            .|++|++|+|.+|.+...+..      .+++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~------~l~~L~~  125 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC------PMASLRH  125 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC------CCTTCSE
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc------ccccCCE
Confidence            68999999999999997  599999999999996            679999999999999987764      6999999


Q ss_pred             ecCc
Q 021827           74 FNAR   77 (307)
Q Consensus        74 LDar   77 (307)
                      ||-.
T Consensus       126 L~Ls  129 (562)
T 3a79_B          126 LDLS  129 (562)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9854

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.87  E-value=6.5e-06  Score=69.11  Aligned_cols=56  Identities=4%  Similarity=0.131  Sum_probs=34.0

Q ss_pred             ccccccCCeeeccCcc-cccccC--CCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccc
Q 021827            4 VTSVVSLRALILNDNE-IVSICK--LDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~-IssIeg--Le~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~   59 (307)
                      +..|++|+.|+|++|. |+.|..  +..|++|++|+|++             .+++|++|+|.+|++...+.
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~  122 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD  122 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc
Confidence            3456666666666664 666653  55666666666652             44566666666666655443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.85  E-value=1.3e-05  Score=70.43  Aligned_cols=66  Identities=24%  Similarity=0.291  Sum_probs=51.1

Q ss_pred             ccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            8 VSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      .+|+.|+|++|.|+.+.  .+..+++|++|+|++            .+++|+.|+|.+|.+...+..    ...+|+|++
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~----l~~l~~L~~  268 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG----LPDLKLLQV  268 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT----GGGCTTCCE
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh----hhcCccCCE
Confidence            47888888888888775  478888888888885            568888888888888876653    356888888


Q ss_pred             ecCc
Q 021827           74 FNAR   77 (307)
Q Consensus        74 LDar   77 (307)
                      |+-.
T Consensus       269 L~l~  272 (332)
T 2ft3_A          269 VYLH  272 (332)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            8753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.84  E-value=1.6e-05  Score=69.09  Aligned_cols=72  Identities=22%  Similarity=0.252  Sum_probs=49.8

Q ss_pred             ccccccCCeeeccCccccc--ccC-CCCCCCCCeEeccc------------CCCCCceEEccCCC-ccCccchHHHHHHh
Q 021827            4 VTSVVSLRALILNDNEIVS--ICK-LDQMKELNTLGMDS------------YFFNLNNLNLQGNP-VAEYDKLAKKVKTL   67 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~Iss--Ieg-Le~L~nL~TLdLS~------------~L~nLrtLnLeGNP-Iak~e~YrrKI~a~   67 (307)
                      +..+.+|+.|+|++|.|+.  +.. +..|++|++|+|++            .+++|++|+|.+|+ +... . ...+...
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-~-l~~~~~~  166 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-A-LQTLLSS  166 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-H-HHHHHHH
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-H-HHHHHhc
Confidence            3456788888888888764  333 67778888888885            67888888888884 4332 1 1345567


Q ss_pred             CCCCceecCc
Q 021827           68 LPNLCIFNAR   77 (307)
Q Consensus        68 LP~L~yLDar   77 (307)
                      +|+|++|+-.
T Consensus       167 ~~~L~~L~l~  176 (336)
T 2ast_B          167 CSRLDELNLS  176 (336)
T ss_dssp             CTTCCEEECC
T ss_pred             CCCCCEEcCC
Confidence            7888888764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.82  E-value=1.4e-05  Score=80.20  Aligned_cols=72  Identities=18%  Similarity=0.131  Sum_probs=48.6

Q ss_pred             cccccccCCeeeccCcccccc--cCCCCCCCCCeEeccc--------------CCCCCceEEccCCCccCccchHHHHHH
Q 021827            3 DVTSVVSLRALILNDNEIVSI--CKLDQMKELNTLGMDS--------------YFFNLNNLNLQGNPVAEYDKLAKKVKT   66 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssI--egLe~L~nL~TLdLS~--------------~L~nLrtLnLeGNPIak~e~YrrKI~a   66 (307)
                      .+..|++|++|+|++|.|+.+  ..+..|++|++|+|++              .|++|+.|+|.+|.+.....  .....
T Consensus        68 ~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~--~~~~~  145 (844)
T 3j0a_A           68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL--HPSFG  145 (844)
T ss_dssp             TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC--CGGGG
T ss_pred             HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc--chhHh
Confidence            356677777888888877776  2377777777777775              45677788888887765421  01234


Q ss_pred             hCCCCceecC
Q 021827           67 LLPNLCIFNA   76 (307)
Q Consensus        67 ~LP~L~yLDa   76 (307)
                      .||+|++|+-
T Consensus       146 ~L~~L~~L~L  155 (844)
T 3j0a_A          146 KLNSLKSIDF  155 (844)
T ss_dssp             TCSSCCEEEE
T ss_pred             hCCCCCEEEC
Confidence            5777777763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.82  E-value=1.1e-05  Score=77.32  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=16.0

Q ss_pred             ccccCCeeeccCcccccccC--CCCCCCCCeEecc
Q 021827            6 SVVSLRALILNDNEIVSICK--LDQMKELNTLGMD   38 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS   38 (307)
                      .|++|+.|+|++|.|+.|..  +..|++|++|+|+
T Consensus        71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  105 (680)
T 1ziw_A           71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM  105 (680)
T ss_dssp             HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             cccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence            34445555555555544443  4444455555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.81  E-value=1.4e-05  Score=80.09  Aligned_cols=70  Identities=20%  Similarity=0.219  Sum_probs=60.7

Q ss_pred             cccccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827            3 DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN   70 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~   70 (307)
                      ++..|.+|+.|+|++|.|+.|+. |..|++|++|+|++           .|++|++|+|.+|.|...+..    +..|++
T Consensus       242 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~----~~~l~~  317 (727)
T 4b8c_D          242 NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE----FGNLCN  317 (727)
T ss_dssp             GGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS----TTSCTT
T ss_pred             hhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh----hhcCCC
Confidence            45678999999999999999976 88999999999997           678999999999999877652    456888


Q ss_pred             CceecC
Q 021827           71 LCIFNA   76 (307)
Q Consensus        71 L~yLDa   76 (307)
                      |++|+-
T Consensus       318 L~~L~L  323 (727)
T 4b8c_D          318 LQFLGV  323 (727)
T ss_dssp             CCCEEC
T ss_pred             ccEEeC
Confidence            888875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.81  E-value=3.3e-05  Score=72.70  Aligned_cols=53  Identities=25%  Similarity=0.269  Sum_probs=30.8

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE   56 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak   56 (307)
                      +..|.+|++|+|++|+|+.+..  +..|++|++|+|++            .+++|++|+|.+|.+..
T Consensus        77 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~  143 (606)
T 3t6q_A           77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS  143 (606)
T ss_dssp             TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred             ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc
Confidence            4556666666666666665532  55666666666654            34555555555555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.80  E-value=1.9e-05  Score=78.27  Aligned_cols=76  Identities=18%  Similarity=0.195  Sum_probs=56.4

Q ss_pred             ccccccccCCeeeccCccccc-cc---CCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHH
Q 021827            2 DDVTSVVSLRALILNDNEIVS-IC---KLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKV   64 (307)
Q Consensus         2 DeL~~L~nL~aL~LS~N~Iss-Ie---gLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI   64 (307)
                      +.+..|.+|++|+|++|.|+. |.   .|..|++|++|+|++             .|++|++|+|.+|.+.........+
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  173 (768)
T 3rgz_A           94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL  173 (768)
T ss_dssp             CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred             hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence            467788999999999999873 22   577888999999985             5688999999999887665533333


Q ss_pred             HHhCCCCceecCc
Q 021827           65 KTLLPNLCIFNAR   77 (307)
Q Consensus        65 ~a~LP~L~yLDar   77 (307)
                      ...+|+|++|+..
T Consensus       174 ~~~l~~L~~L~Ls  186 (768)
T 3rgz_A          174 SDGCGELKHLAIS  186 (768)
T ss_dssp             TTCCTTCCEEECC
T ss_pred             hccCCCCCEEECC
Confidence            4566777776643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.80  E-value=2.5e-05  Score=68.47  Aligned_cols=66  Identities=21%  Similarity=0.228  Sum_probs=50.0

Q ss_pred             ccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            8 VSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      .+|+.|+|++|.|+.+.  .+..|++|++|+|++            .+++|+.|+|.+|++...+..    ...+|+|++
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~----l~~l~~L~~  267 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG----LADHKYIQV  267 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT----TTTCSSCCE
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh----hccCCCcCE
Confidence            67888888888888773  477888888888885            567888888888888866552    345788888


Q ss_pred             ecCc
Q 021827           74 FNAR   77 (307)
Q Consensus        74 LDar   77 (307)
                      |+-.
T Consensus       268 L~l~  271 (330)
T 1xku_A          268 VYLH  271 (330)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            7753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.79  E-value=1.6e-05  Score=69.06  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=55.0

Q ss_pred             ccccccCCeeeccCccccc--ccCCCCCCCCCeEeccc--------------CCCCCceEEccCC-CccCccchHHHHHH
Q 021827            4 VTSVVSLRALILNDNEIVS--ICKLDQMKELNTLGMDS--------------YFFNLNNLNLQGN-PVAEYDKLAKKVKT   66 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~Iss--IegLe~L~nL~TLdLS~--------------~L~nLrtLnLeGN-PIak~e~YrrKI~a   66 (307)
                      +..|++|+.|+|++|.|+.  +..+..+++|++|+|++              .+++|++|+|.+| .+....  ...+..
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~  191 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH--VQVAVA  191 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH--HHHHHH
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH--HHHHHH
Confidence            4678899999999998873  33477788999999986              5788999999999 665421  234566


Q ss_pred             hCC-CCceecCcc
Q 021827           67 LLP-NLCIFNARP   78 (307)
Q Consensus        67 ~LP-~L~yLDarp   78 (307)
                      .+| +|++|+-.-
T Consensus       192 ~l~~~L~~L~l~~  204 (336)
T 2ast_B          192 HVSETITQLNLSG  204 (336)
T ss_dssp             HSCTTCCEEECCS
T ss_pred             hcccCCCEEEeCC
Confidence            788 898888643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.78  E-value=1.4e-05  Score=67.04  Aligned_cols=56  Identities=14%  Similarity=0.144  Sum_probs=36.6

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCC---eEeccc-------------CCCCCc-eEEccCCCccCccc
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELN---TLGMDS-------------YFFNLN-NLNLQGNPVAEYDK   59 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~---TLdLS~-------------~L~nLr-tLnLeGNPIak~e~   59 (307)
                      +..|++|+.|+|++|+|+.|+.+..+++|+   +|+|++             .+++|+ .|+|.+|.+...+.
T Consensus       101 f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~  173 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG  173 (239)
T ss_dssp             EECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred             hCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence            445677777777777777776666666666   666664             345666 77777777665443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.71  E-value=1.3e-05  Score=69.39  Aligned_cols=34  Identities=35%  Similarity=0.409  Sum_probs=15.5

Q ss_pred             CCCCCceEEccCCCccCcc-chHHHHHHhCCCCce
Q 021827           40 YFFNLNNLNLQGNPVAEYD-KLAKKVKTLLPNLCI   73 (307)
Q Consensus        40 ~L~nLrtLnLeGNPIak~e-~YrrKI~a~LP~L~y   73 (307)
                      +|++|+.|+|.++|-.... --...+++.||+|++
T Consensus       137 ~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            4455555555555532222 223344455555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.69  E-value=3.9e-05  Score=74.72  Aligned_cols=54  Identities=15%  Similarity=0.194  Sum_probs=28.2

Q ss_pred             ccccCCeeeccCcccccccC-CCCCCCCCeEeccc------------------CCCCCceEEccCCCccCccc
Q 021827            6 SVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS------------------YFFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~------------------~L~nLrtLnLeGNPIak~e~   59 (307)
                      .|++|+.|+|++|+|+.|+. +..|++|++|+|++                  .|++|+.|+|.+|.+...+.
T Consensus       511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~  583 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE  583 (636)
T ss_dssp             TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS
T ss_pred             cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCH
Confidence            45555555555555555533 45555555555521                  34555555555555544433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.69  E-value=5e-05  Score=73.96  Aligned_cols=75  Identities=13%  Similarity=0.219  Sum_probs=55.8

Q ss_pred             cccccccCCeeeccCccccc------------------ccC-CC--CCCCCCeEeccc------------CCCCCceEEc
Q 021827            3 DVTSVVSLRALILNDNEIVS------------------ICK-LD--QMKELNTLGMDS------------YFFNLNNLNL   49 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~Iss------------------Ieg-Le--~L~nL~TLdLS~------------~L~nLrtLnL   49 (307)
                      .+..|++|+.|+|++|.|+.                  |+. +.  .|++|++|+|++            .|++|++|+|
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV  280 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence            47789999999999999998                  666 77  899999999986            6789999999


Q ss_pred             cCCC-ccC--ccchHHHH--HHhCCCCceecCc
Q 021827           50 QGNP-VAE--YDKLAKKV--KTLLPNLCIFNAR   77 (307)
Q Consensus        50 eGNP-Iak--~e~YrrKI--~a~LP~L~yLDar   77 (307)
                      .+|. +..  .+.....+  ...+|+|++|+-.
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~  313 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIG  313 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence            9998 663  33311111  0224777777643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.65  E-value=6.1e-05  Score=70.87  Aligned_cols=65  Identities=20%  Similarity=0.196  Sum_probs=50.0

Q ss_pred             ccCCeeeccCcccccccCCCCCCCCCeEeccc--------CCCCCceEEccCCCccCccchHHHHHHhCCCCceecCc
Q 021827            8 VSLRALILNDNEIVSICKLDQMKELNTLGMDS--------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR   77 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~--------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLDar   77 (307)
                      .+|+.|+|++|+|+.|+.+..|++|++|+|++        .+.+|++|+|.+|.+...+.     ...+|+|++|+..
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~-----~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE-----LQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-----CTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCcc-----ccCCCCCCEEECC
Confidence            57888888888888888888888888888886        34578888888888877653     2457777777643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.64  E-value=5e-05  Score=78.88  Aligned_cols=75  Identities=15%  Similarity=0.254  Sum_probs=57.4

Q ss_pred             cccccccCCeeeccCccccc------------------ccC-CC--CCCCCCeEeccc------------CCCCCceEEc
Q 021827            3 DVTSVVSLRALILNDNEIVS------------------ICK-LD--QMKELNTLGMDS------------YFFNLNNLNL   49 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~Iss------------------Ieg-Le--~L~nL~TLdLS~------------~L~nLrtLnL   49 (307)
                      .+..|++|+.|+|++|.|+.                  |+. +.  .|++|++|+|++            .|++|++|+|
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence            57789999999999999998                  665 66  899999999986            6789999999


Q ss_pred             cCCC-ccC--ccchHHHHH---HhCCCCceecCc
Q 021827           50 QGNP-VAE--YDKLAKKVK---TLLPNLCIFNAR   77 (307)
Q Consensus        50 eGNP-Iak--~e~YrrKI~---a~LP~L~yLDar   77 (307)
                      .+|. +..  .+.....+.   ..+|+|++|+-.
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls  556 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG  556 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence            9998 664  343222222   356788877743

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.55  E-value=8.4e-05  Score=73.71  Aligned_cols=68  Identities=19%  Similarity=0.256  Sum_probs=34.2

Q ss_pred             cccccCCeeeccCcccccccCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      ..|++|+.|+|++|.|+....+..|++|++|+|++           .+++|++|+|.+|.+.....   .....+|+|++
T Consensus       175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~  251 (768)
T 3rgz_A          175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS---RAISTCTELKL  251 (768)
T ss_dssp             TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH---HHTTTCSSCCE
T ss_pred             ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc---HHHhcCCCCCE
Confidence            34444555555555554444445555555555553           34556666666666543211   22334555555


Q ss_pred             ec
Q 021827           74 FN   75 (307)
Q Consensus        74 LD   75 (307)
                      |+
T Consensus       252 L~  253 (768)
T 3rgz_A          252 LN  253 (768)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.53  E-value=8.5e-05  Score=77.16  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=15.9

Q ss_pred             ccCCeeeccCcccccccC-CC--CCCCCCeEeccc
Q 021827            8 VSLRALILNDNEIVSICK-LD--QMKELNTLGMDS   39 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg-Le--~L~nL~TLdLS~   39 (307)
                      ++|+.|+|++|+|+.|+. +.  .|++|+.|+|++
T Consensus       728 ~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~  762 (876)
T 4ecn_A          728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY  762 (876)
T ss_dssp             GGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCS
T ss_pred             CCccEEECCCCCCccchHHhhhccCCCcCEEEeCC
Confidence            355555555555554443 22  455555555553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.48  E-value=0.00013  Score=72.55  Aligned_cols=63  Identities=21%  Similarity=0.189  Sum_probs=42.8

Q ss_pred             ccCCeeeccCcccccccCCCCCCCCCeEeccc--------CCCCCceEEccCCCccCccchHHHHHHhCCCCceecC
Q 021827            8 VSLRALILNDNEIVSICKLDQMKELNTLGMDS--------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA   76 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~--------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLDa   76 (307)
                      .+|+.|+|++|.|+.|+  ..+++|++|+|++        .+++|+.|+|.+|.|...+.    ....||+|++|+-
T Consensus       221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~----~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPE----SLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCG----GGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCH----HHhhccccCEEEe
Confidence            56777777777777766  4556777777775        44677778888887776554    2446777777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.48  E-value=0.00013  Score=73.14  Aligned_cols=34  Identities=24%  Similarity=0.370  Sum_probs=16.8

Q ss_pred             cccccCCeeeccCcccccccC--CCCCCCCCeEecc
Q 021827            5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD   38 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS   38 (307)
                      ..|++|+.|+|++|.|+.+..  +..|++|++|+|+
T Consensus       287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  322 (844)
T 3j0a_A          287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS  322 (844)
T ss_dssp             SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred             hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence            344555555555555554422  4445555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.47  E-value=0.00011  Score=73.01  Aligned_cols=28  Identities=29%  Similarity=0.439  Sum_probs=12.8

Q ss_pred             cCCeeeccCcccccccCCCCCCCCCeEecc
Q 021827            9 SLRALILNDNEIVSICKLDQMKELNTLGMD   38 (307)
Q Consensus         9 nL~aL~LS~N~IssIegLe~L~nL~TLdLS   38 (307)
                      +|+.|+|++|.|+.|+.  .+++|++|+|+
T Consensus        62 ~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls   89 (622)
T 3g06_A           62 HITTLVIPDNNLTSLPA--LPPELRTLEVS   89 (622)
T ss_dssp             TCSEEEECSCCCSCCCC--CCTTCCEEEEC
T ss_pred             CCcEEEecCCCCCCCCC--cCCCCCEEEcC
Confidence            34444444444444443  34444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.47  E-value=4.6e-05  Score=68.17  Aligned_cols=32  Identities=13%  Similarity=0.147  Sum_probs=26.0

Q ss_pred             ccCCeeeccCcccccccC--CCCCCCCCeEeccc
Q 021827            8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS   39 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~   39 (307)
                      .+|+.|+|++|+|++|..  +..|++|++|+|++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   63 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ   63 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEEC
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcC
Confidence            568888888888888874  78888888888875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.45  E-value=5.6e-05  Score=68.25  Aligned_cols=72  Identities=18%  Similarity=0.195  Sum_probs=39.2

Q ss_pred             cccccCCeeeccCccccc-----ccC-CCCCCCCCeEeccc-------------CCC----CCceEEccCCCccCcc-ch
Q 021827            5 TSVVSLRALILNDNEIVS-----ICK-LDQMKELNTLGMDS-------------YFF----NLNNLNLQGNPVAEYD-KL   60 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~Iss-----Ieg-Le~L~nL~TLdLS~-------------~L~----nLrtLnLeGNPIak~e-~Y   60 (307)
                      ..+++|+.|+|++|+|+.     |.. |..+++|++|+|++             .++    +|++|+|.+|.|.... ..
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            445666666666666663     222 45556666666664             233    4666666666665432 11


Q ss_pred             HHHHHHhCCCCceecC
Q 021827           61 AKKVKTLLPNLCIFNA   76 (307)
Q Consensus        61 rrKI~a~LP~L~yLDa   76 (307)
                      .......+|+|++||-
T Consensus       105 l~~~l~~~~~L~~L~L  120 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHL  120 (461)
T ss_dssp             HHHHTTSCTTCCEEEC
T ss_pred             HHHHHccCCceeEEEC
Confidence            1233344566666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.41  E-value=9.9e-05  Score=61.38  Aligned_cols=52  Identities=17%  Similarity=0.180  Sum_probs=29.7

Q ss_pred             cccccCCeeeccCc-cccc-----cc-CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccC
Q 021827            5 TSVVSLRALILNDN-EIVS-----IC-KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAE   56 (307)
Q Consensus         5 ~~L~nL~aL~LS~N-~Iss-----Ie-gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak   56 (307)
                      ....+|++|+|++| +|..     |. .|..++.|++|+|++                ..++|++|+|.+|.|..
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            34556666666666 5542     22 255556666666664                33556666666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.41  E-value=0.00016  Score=64.87  Aligned_cols=70  Identities=19%  Similarity=0.221  Sum_probs=41.3

Q ss_pred             ccCCeeeccCccccccc------CCCCCC-CCCeEeccc------------C-----CCCCceEEccCCCccCccc-hHH
Q 021827            8 VSLRALILNDNEIVSIC------KLDQMK-ELNTLGMDS------------Y-----FFNLNNLNLQGNPVAEYDK-LAK   62 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIe------gLe~L~-nL~TLdLS~------------~-----L~nLrtLnLeGNPIak~e~-Yrr   62 (307)
                      .+|+.|+|++|.|+.+.      .|..++ +|++|+|++            .     +++|++|+|.+|.+..... ...
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            44777777777777653      355666 677777775            1     2677777777777765432 122


Q ss_pred             HHHHhC-CCCceecCc
Q 021827           63 KVKTLL-PNLCIFNAR   77 (307)
Q Consensus        63 KI~a~L-P~L~yLDar   77 (307)
                      .....+ ++|++||-.
T Consensus       102 ~~l~~~~~~L~~L~Ls  117 (362)
T 3goz_A          102 KTLAAIPFTITVLDLG  117 (362)
T ss_dssp             HHHHTSCTTCCEEECC
T ss_pred             HHHHhCCCCccEEECc
Confidence            222233 666666643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.39  E-value=0.00018  Score=71.09  Aligned_cols=15  Identities=20%  Similarity=0.319  Sum_probs=6.9

Q ss_pred             CCceEEccCCCccCc
Q 021827           43 NLNNLNLQGNPVAEY   57 (307)
Q Consensus        43 nLrtLnLeGNPIak~   57 (307)
                      +|++|+|.+|++...
T Consensus       161 ~L~~L~Ls~N~L~~l  175 (571)
T 3cvr_A          161 SLEVLSVRNNQLTFL  175 (571)
T ss_dssp             TCCEEECCSSCCSCC
T ss_pred             CcCEEECCCCCCCCc
Confidence            444444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.36  E-value=0.00022  Score=63.91  Aligned_cols=32  Identities=16%  Similarity=0.183  Sum_probs=16.0

Q ss_pred             ccCCeeeccCcccccccC------CCCC-CCCCeEeccc
Q 021827            8 VSLRALILNDNEIVSICK------LDQM-KELNTLGMDS   39 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg------Le~L-~nL~TLdLS~   39 (307)
                      .+|+.|+|++|+|+.+..      |..+ ++|++|+|++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  118 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW  118 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcC
Confidence            555556666665553321      3333 4555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.35  E-value=0.00013  Score=67.45  Aligned_cols=70  Identities=16%  Similarity=0.192  Sum_probs=44.8

Q ss_pred             cccCCeeeccCccccc-----cc-CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccc-hHHH
Q 021827            7 VVSLRALILNDNEIVS-----IC-KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDK-LAKK   63 (307)
Q Consensus         7 L~nL~aL~LS~N~Iss-----Ie-gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~-YrrK   63 (307)
                      ..+|++|+|++|.|+.     |. .|..++.|++|+|++                .+++|++|+|.+|.|....- +...
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            4567788888887764     21 135677778888875                45678888888887765432 1223


Q ss_pred             HHHhCCCCceecC
Q 021827           64 VKTLLPNLCIFNA   76 (307)
Q Consensus        64 I~a~LP~L~yLDa   76 (307)
                      .+...|+|++||-
T Consensus       234 ~L~~~~~L~~L~L  246 (372)
T 3un9_A          234 AAREHPSLELLHL  246 (372)
T ss_dssp             HHHHCSSCCEEEC
T ss_pred             HHHhCCCCCEEec
Confidence            3345678887763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.34  E-value=0.00012  Score=60.85  Aligned_cols=75  Identities=13%  Similarity=0.123  Sum_probs=57.9

Q ss_pred             ccccccCCeeeccCccccc-----c-cCCCCCCCCCeEeccc----------------CCCCCceEEc--cCCCccCccc
Q 021827            4 VTSVVSLRALILNDNEIVS-----I-CKLDQMKELNTLGMDS----------------YFFNLNNLNL--QGNPVAEYDK   59 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~Iss-----I-egLe~L~nL~TLdLS~----------------~L~nLrtLnL--eGNPIak~e~   59 (307)
                      |...++|++|+|++|+|..     | ..|...+.|++|+|++                ..+.|++|+|  .+|+|....-
T Consensus        61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~  140 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  140 (185)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence            4556889999999999985     2 3366778999999996                5688999999  9999987532


Q ss_pred             -hHHHHHHhCCCCceecCcc
Q 021827           60 -LAKKVKTLLPNLCIFNARP   78 (307)
Q Consensus        60 -YrrKI~a~LP~L~yLDarp   78 (307)
                       +....+...++|++||-..
T Consensus       141 ~~l~~~L~~n~~L~~L~L~~  160 (185)
T 1io0_A          141 MEIANMLEKNTTLLKFGYHF  160 (185)
T ss_dssp             HHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHhCCCcCEEeccC
Confidence             2334455679999998543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.33  E-value=0.00023  Score=66.96  Aligned_cols=63  Identities=21%  Similarity=0.250  Sum_probs=34.9

Q ss_pred             cCCeeeccCcccccccCCCCCCCCCeEeccc--------CCCCCceEEccCCCccCccchHHHHHHhCCCCceecC
Q 021827            9 SLRALILNDNEIVSICKLDQMKELNTLGMDS--------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA   76 (307)
Q Consensus         9 nL~aL~LS~N~IssIegLe~L~nL~TLdLS~--------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLDa   76 (307)
                      +|+.|+|++|+|+.|+.+..|++|++|+|++        .+++|++|+|.+|.+...+.     ...+|+|++|+.
T Consensus       174 ~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-----~~~l~~L~~L~l  244 (454)
T 1jl5_A          174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-----LQNLPFLTTIYA  244 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC-----CTTCTTCCEEEC
T ss_pred             cccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc-----cCCCCCCCEEEC
Confidence            4555555555555555555666666666654        12356666666666654443     235666666664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.32  E-value=0.00024  Score=70.27  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=32.3

Q ss_pred             ccCCeeeccCcccccccCCCCCCCCCeEeccc----CCC----CCceEEccCCCccCccchHHHHHHhCCCCceec
Q 021827            8 VSLRALILNDNEIVSICKLDQMKELNTLGMDS----YFF----NLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN   75 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----~L~----nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLD   75 (307)
                      .+|+.|+|++|.|+.|+  ..+++|++|+|++    .++    +|++|+|.+|.+...+.       .+|+|++|+
T Consensus        80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~lp~-------~l~~L~~L~  146 (571)
T 3cvr_A           80 PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPE-------LPALLEYIN  146 (571)
T ss_dssp             TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-------CCTTCCEEE
T ss_pred             CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCCCCC-------cCccccEEe
Confidence            44666666666666665  4456666666664    111    55556666655555443       345555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.31  E-value=0.00031  Score=63.42  Aligned_cols=69  Identities=14%  Similarity=0.158  Sum_probs=40.7

Q ss_pred             cCCeeeccCccccc------ccCCCCCCCCCeEeccc-----------------CCCCCceEEccCCCccCccc-hHHHH
Q 021827            9 SLRALILNDNEIVS------ICKLDQMKELNTLGMDS-----------------YFFNLNNLNLQGNPVAEYDK-LAKKV   64 (307)
Q Consensus         9 nL~aL~LS~N~Iss------IegLe~L~nL~TLdLS~-----------------~L~nLrtLnLeGNPIak~e~-YrrKI   64 (307)
                      +|+.|+|++|+|+.      ...|..+++|++|+|++                 .+++|++|+|.+|.+....- +....
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            56777777777663      22366666777777764                 13457777777776655321 22233


Q ss_pred             HHhCCCCceecCc
Q 021827           65 KTLLPNLCIFNAR   77 (307)
Q Consensus        65 ~a~LP~L~yLDar   77 (307)
                      ...+|+|++|+-.
T Consensus       166 l~~~~~L~~L~L~  178 (461)
T 1z7x_W          166 LRAKPDFKELTVS  178 (461)
T ss_dssp             HHHCTTCCEEECC
T ss_pred             HhhCCCCCEEECc
Confidence            4456777777644

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.10  E-value=0.00038  Score=61.54  Aligned_cols=65  Identities=18%  Similarity=0.104  Sum_probs=42.9

Q ss_pred             cccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCc-eEEccCCCccCccchHHHHHHhCCCCc
Q 021827            7 VVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLN-NLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLr-tLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      |.+|+.|+|++|+|++|+.  +..|.+|+.|+|++           .|.+|+ .|+|.. .+...+.   ....-|++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~---~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEF---GAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECT---TTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEch---hhhhCCccCC
Confidence            6777788888777777776  77777777777764           556676 777766 4554443   2334456666


Q ss_pred             eec
Q 021827           73 IFN   75 (307)
Q Consensus        73 yLD   75 (307)
                      .++
T Consensus       301 ~l~  303 (329)
T 3sb4_A          301 YVL  303 (329)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.03  E-value=0.00029  Score=65.13  Aligned_cols=55  Identities=20%  Similarity=0.179  Sum_probs=46.4

Q ss_pred             ccccccCCeeeccCcccccc------cCCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCcc
Q 021827            4 VTSVVSLRALILNDNEIVSI------CKLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYD   58 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssI------egLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e   58 (307)
                      |..+++|++|+|++|.|+..      ..|..++.|++|+|++                .+++|++|+|.+|+|....
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            35678999999999999862      3477888999999996                4589999999999997653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.01  E-value=0.00021  Score=66.69  Aligned_cols=69  Identities=16%  Similarity=0.143  Sum_probs=38.5

Q ss_pred             cccccCCeeeccCc--cccc--ccCC-CCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHH
Q 021827            5 TSVVSLRALILNDN--EIVS--ICKL-DQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKT   66 (307)
Q Consensus         5 ~~L~nL~aL~LS~N--~Iss--IegL-e~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a   66 (307)
                      ..|++|+.|+|+++  .|+.  +..+ ..+++|++|+|++             .+++|+.|+|.+|+|...  ....+..
T Consensus       433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~  510 (592)
T 3ogk_B          433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER--AIAAAVT  510 (592)
T ss_dssp             HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH--HHHHHHH
T ss_pred             HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH--HHHHHHH
Confidence            44677777777532  2331  1111 2356677777764             557777777777775322  1233445


Q ss_pred             hCCCCceec
Q 021827           67 LLPNLCIFN   75 (307)
Q Consensus        67 ~LP~L~yLD   75 (307)
                      .+|+|++|+
T Consensus       511 ~l~~L~~L~  519 (592)
T 3ogk_B          511 KLPSLRYLW  519 (592)
T ss_dssp             HCSSCCEEE
T ss_pred             hcCccCeeE
Confidence            567777765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.95  E-value=0.00029  Score=65.57  Aligned_cols=65  Identities=12%  Similarity=0.145  Sum_probs=34.3

Q ss_pred             cccCCeeeccCccccc--ccCC-CCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827            7 VVSLRALILNDNEIVS--ICKL-DQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN   70 (307)
Q Consensus         7 L~nL~aL~LS~N~Iss--IegL-e~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~   70 (307)
                      +++|+.|+|++|.|+.  +..+ ..+++|++|+|++             .+++|+.|+|.+||+.. .. ...+...+|.
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~-~~~l~~~lp~  532 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF-GA-CKLLGQKMPK  532 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH-HH-HHHHHHHCTT
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH-HH-HHHHHHhCCC
Confidence            4556666666666542  1112 3456666666664             35666666666666621 11 2234455666


Q ss_pred             Cce
Q 021827           71 LCI   73 (307)
Q Consensus        71 L~y   73 (307)
                      |++
T Consensus       533 l~i  535 (594)
T 2p1m_B          533 LNV  535 (594)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            644

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.87  E-value=0.00055  Score=59.26  Aligned_cols=70  Identities=7%  Similarity=0.087  Sum_probs=54.0

Q ss_pred             cCCeeeccCcccc--cccCCCCCCCCCeEeccc-------------CC----CCCceEEccCCCccCccchHHHHHHhCC
Q 021827            9 SLRALILNDNEIV--SICKLDQMKELNTLGMDS-------------YF----FNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         9 nL~aL~LS~N~Is--sIegLe~L~nL~TLdLS~-------------~L----~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +|++|+|+++.|+  .+..|..|++|++|+|+.             .+    ++|+.|+|.+|+-..+...  .-++.+|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl--~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI--IALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH--HHGGGCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH--HHHhcCC
Confidence            5899999999997  456688899999999997             43    4799999999985444442  2235689


Q ss_pred             CCceecCcccC
Q 021827           70 NLCIFNARPID   80 (307)
Q Consensus        70 ~L~yLDarpV~   80 (307)
                      +|++|+-.-..
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            99999865543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.85  E-value=0.00024  Score=63.56  Aligned_cols=65  Identities=17%  Similarity=0.058  Sum_probs=49.4

Q ss_pred             ccCCeeeccCcccccccC-CCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            8 VSLRALILNDNEIVSICK-LDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      ..|+.|+|++|+|+.|.. +-.+.+|.+|+|++             .+++|++|+|++|.|...+.+   ...-|++|+.
T Consensus       154 ~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~  230 (350)
T 4ay9_X          154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRA  230 (350)
T ss_dssp             SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEEC
T ss_pred             hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhh
Confidence            358889999999999976 55677899999974             568999999999999988763   2334444444


Q ss_pred             ec
Q 021827           74 FN   75 (307)
Q Consensus        74 LD   75 (307)
                      ++
T Consensus       231 l~  232 (350)
T 4ay9_X          231 RS  232 (350)
T ss_dssp             TT
T ss_pred             cc
Confidence            44

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.74  E-value=0.0013  Score=61.31  Aligned_cols=71  Identities=23%  Similarity=0.298  Sum_probs=46.7

Q ss_pred             cccccCCeeeccCccccccc----------------------------CCCCCCCCCeEeccc-----------CCCCCc
Q 021827            5 TSVVSLRALILNDNEIVSIC----------------------------KLDQMKELNTLGMDS-----------YFFNLN   45 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIe----------------------------gLe~L~nL~TLdLS~-----------~L~nLr   45 (307)
                      ..+++|+.|+|++|.+..+.                            .+..+++|++|.|+.           .+++|+
T Consensus       217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~  296 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR  296 (592)
T ss_dssp             HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred             hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence            35677888888888776543                            234445555555543           467899


Q ss_pred             eEEccCCCccCccchHHHHHHhCCCCceecCc
Q 021827           46 NLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR   77 (307)
Q Consensus        46 tLnLeGNPIak~e~YrrKI~a~LP~L~yLDar   77 (307)
                      .|+|.+|++....-  ..+...+|+|++|+-.
T Consensus       297 ~L~Ls~~~l~~~~~--~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          297 KLDLLYALLETEDH--CTLIQKCPNLEVLETR  326 (592)
T ss_dssp             EEEETTCCCCHHHH--HHHHTTCTTCCEEEEE
T ss_pred             EEecCCCcCCHHHH--HHHHHhCcCCCEEecc
Confidence            99999999543321  2455678888888754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.71  E-value=0.0017  Score=60.45  Aligned_cols=67  Identities=19%  Similarity=0.257  Sum_probs=37.8

Q ss_pred             ccccCCeeeccCccccc-----ccCCC-CCCCCCeEeccc---------------CCCCCceEEccCCCccCccchHHHH
Q 021827            6 SVVSLRALILNDNEIVS-----ICKLD-QMKELNTLGMDS---------------YFFNLNNLNLQGNPVAEYDKLAKKV   64 (307)
Q Consensus         6 ~L~nL~aL~LS~N~Iss-----IegLe-~L~nL~TLdLS~---------------~L~nLrtLnLeGNPIak~e~YrrKI   64 (307)
                      .|++|++|+|++|.|+.     +..+. .+++|++|+|+.               .+++|++|+|.+|....  . ...+
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~--~-l~~~  230 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE--K-LATL  230 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH--H-HHHH
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH--H-HHHH
Confidence            45667777777776553     22222 455677777653               34677777777762211  1 2344


Q ss_pred             HHhCCCCceec
Q 021827           65 KTLLPNLCIFN   75 (307)
Q Consensus        65 ~a~LP~L~yLD   75 (307)
                      ...+|+|+.|+
T Consensus       231 ~~~~~~L~~L~  241 (594)
T 2p1m_B          231 LQRAPQLEELG  241 (594)
T ss_dssp             HHHCTTCSEEE
T ss_pred             HhcCCcceEcc
Confidence            45566666665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.53  E-value=0.0016  Score=52.50  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=24.9

Q ss_pred             cCCeeeccCcccccccCCCCCCCCCeEecccCCCCCceEEccCCCcc
Q 021827            9 SLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVA   55 (307)
Q Consensus         9 nL~aL~LS~N~IssIegLe~L~nL~TLdLS~~L~nLrtLnLeGNPIa   55 (307)
                      +|+.|+|++|+|++|.. +.+         ..|++|++|+|.|||+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~-~~f---------~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPP-GLL---------DALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCT-TTG---------GGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccCh-hhh---------hhccccCEEEecCCCee
Confidence            56666666666666653 001         14577889999999995

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.51  E-value=0.0021  Score=56.74  Aligned_cols=69  Identities=14%  Similarity=0.071  Sum_probs=58.6

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCC-eEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELN-TLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~-TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +..|.+|+.|+|.+| |+.|..  +..|.+|+ +|+|++           .|++|+.|+|.+|.+...+.+   ...-+|
T Consensus       246 F~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~---aF~~~~  321 (329)
T 3sb4_A          246 FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDE---LFGNGV  321 (329)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEECTT---TTCTTC
T ss_pred             hhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCCCccCccchh---hhcCCc
Confidence            457889999999999 999988  89999999 999986           679999999999999988763   445678


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      +|+.+..
T Consensus       322 ~L~~ly~  328 (329)
T 3sb4_A          322 PSKLIYK  328 (329)
T ss_dssp             CCCEEEC
T ss_pred             chhhhcc
Confidence            8887753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.65  E-value=0.0029  Score=59.00  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=16.1

Q ss_pred             ccccCCeeeccCcccccccCCCCCCCCCeEecc
Q 021827            6 SVVSLRALILNDNEIVSICKLDQMKELNTLGMD   38 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS   38 (307)
                      .+++|+.|+|++|.-.++..+ .+++|++|+|+
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~  201 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEII  201 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEE
T ss_pred             cCCCCcEEEEeCCCCceeccc-cCCCCcEEEEe
Confidence            446677777766631223332 24455555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.09  E-value=0.011  Score=53.63  Aligned_cols=35  Identities=34%  Similarity=0.460  Sum_probs=31.4

Q ss_pred             cccccCCeeeccCcccccccCCCCCC--CCCeEeccc
Q 021827            5 TSVVSLRALILNDNEIVSICKLDQMK--ELNTLGMDS   39 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegLe~L~--nL~TLdLS~   39 (307)
                      ..|++|+.|+|++|+|+.+..|+.|.  +|++|+|+.
T Consensus       193 ~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~  229 (267)
T 3rw6_A          193 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG  229 (267)
T ss_dssp             HHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTT
T ss_pred             hhCCCCCEEECCCCccCCchhhhhcccCCcceEEccC
Confidence            37899999999999999988888777  999999986

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.06  E-value=0.0076  Score=56.17  Aligned_cols=76  Identities=13%  Similarity=0.234  Sum_probs=51.4

Q ss_pred             ccccCCeeeccC--cc------cccccC-C--CCCCCCCeEeccc---------------CCCCCceEEccCCCccCccc
Q 021827            6 SVVSLRALILND--NE------IVSICK-L--DQMKELNTLGMDS---------------YFFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus         6 ~L~nL~aL~LS~--N~------IssIeg-L--e~L~nL~TLdLS~---------------~L~nLrtLnLeGNPIak~e~   59 (307)
                      .|++|+.|.|+.  |.      |..|.. |  ..+++|++|.|++               .+++|++|+|+.|.+.....
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            689999999853  22      322222 2  3578999999975               47899999999998876422


Q ss_pred             hHHHHH---HhCCCCceecC--cccChhh
Q 021827           60 LAKKVK---TLLPNLCIFNA--RPIDRIT   83 (307)
Q Consensus        60 YrrKI~---a~LP~L~yLDa--rpV~e~t   83 (307)
                        ..+.   ..+|+|+.||-  .+|.+..
T Consensus       297 --~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          297 --RLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             --HHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             --HHHHhhcccCCcceEEECCCCcCCHHH
Confidence              2222   46799998874  3455543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.07  E-value=0.045  Score=48.01  Aligned_cols=68  Identities=13%  Similarity=0.152  Sum_probs=49.7

Q ss_pred             cccCCeeeccCc-cccc-----cc-CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccchHHH
Q 021827            7 VVSLRALILNDN-EIVS-----IC-KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDKLAKK   63 (307)
Q Consensus         7 L~nL~aL~LS~N-~Iss-----Ie-gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~YrrK   63 (307)
                      -..|+.|+|++| +|..     |+ .|...+.|+.|+|++                .-+.|++|+|..|.|...--  ..
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga--~a  117 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL--AR  117 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH--HH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH--HH
Confidence            356999999985 8863     33 377888999999986                44789999999999976533  34


Q ss_pred             HHHhC---CCCceecC
Q 021827           64 VKTLL---PNLCIFNA   76 (307)
Q Consensus        64 I~a~L---P~L~yLDa   76 (307)
                      +...|   ..|+.|+-
T Consensus       118 la~aL~~N~tL~~L~L  133 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKA  133 (197)
T ss_dssp             HHHHTTTTCCCSEEEC
T ss_pred             HHHHHhhCCceeEEEC
Confidence            44444   56777775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.65  E-value=0.14  Score=44.84  Aligned_cols=80  Identities=8%  Similarity=0.013  Sum_probs=55.5

Q ss_pred             cccccCCeeeccCcccccc-----cC-CCCCCCCCeEeccc----------------CCCCCceEEccCC---CccCcc-
Q 021827            5 TSVVSLRALILNDNEIVSI-----CK-LDQMKELNTLGMDS----------------YFFNLNNLNLQGN---PVAEYD-   58 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssI-----eg-Le~L~nL~TLdLS~----------------~L~nLrtLnLeGN---PIak~e-   58 (307)
                      ..-+.|+.|+|++|+|..-     .. |...+-|++|+|++                .-..|+.|+|.+|   +|-..- 
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~  146 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  146 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence            3346799999999999833     22 55778899999996                4477999999865   444332 


Q ss_pred             chHHHHHHhCCCCceecCcccChhhh
Q 021827           59 KLAKKVKTLLPNLCIFNARPIDRITK   84 (307)
Q Consensus        59 ~YrrKI~a~LP~L~yLDarpV~e~tR   84 (307)
                      ...-..+..=+.|+.|+...-....|
T Consensus       147 ~~ia~aL~~N~tL~~L~l~~~~~g~~  172 (197)
T 1pgv_A          147 MDMMMAIEENESLLRVGISFASMEAR  172 (197)
T ss_dssp             HHHHHHHHHCSSCCEEECCCCCHHHH
T ss_pred             HHHHHHHHhCCCcCeEeccCCCccHH
Confidence            22234445568999998876554443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=91.85  E-value=0.18  Score=47.00  Aligned_cols=54  Identities=13%  Similarity=0.112  Sum_probs=34.8

Q ss_pred             cccccCCeeeccCcccc-----cccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccc
Q 021827            5 TSVVSLRALILNDNEIV-----SICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~Is-----sIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~   59 (307)
                      ..|.+|+.|.|.+|.+.     .|..  +..|.+|+.|.|.+           .|.+|+.|+|..| +.....
T Consensus       268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred             hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence            45677777777777765     4554  66777777777764           4566777777444 444433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.63  E-value=0.41  Score=43.31  Aligned_cols=67  Identities=9%  Similarity=0.114  Sum_probs=41.8

Q ss_pred             cccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827            5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL   71 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L   71 (307)
                      ..+.+|+.+.|. +.|+.|..  +..|.+|+++.|..           .+.+|+.|+|-.| |.....|   ...-+++|
T Consensus       285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~---aF~~C~~L  359 (394)
T 4gt6_A          285 MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPES---AFSNCTAL  359 (394)
T ss_dssp             TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGG---GGTTCTTC
T ss_pred             ccccccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHh---HhhCCCCC
Confidence            345677777775 55677765  66777777777764           4567777777433 5555443   23445666


Q ss_pred             ceecC
Q 021827           72 CIFNA   76 (307)
Q Consensus        72 ~yLDa   76 (307)
                      +.++.
T Consensus       360 ~~i~~  364 (394)
T 4gt6_A          360 NNIEY  364 (394)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            66653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.14  E-value=0.33  Score=43.22  Aligned_cols=33  Identities=9%  Similarity=0.276  Sum_probs=17.3

Q ss_pred             ccccCCeeeccCcccccccC--CCCCCCCCeEecc
Q 021827            6 SVVSLRALILNDNEIVSICK--LDQMKELNTLGMD   38 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS   38 (307)
                      .|.+|+.+.|.+|.|++|..  +..|.+|+.+.|.
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            34455555555555555544  4455555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=88.20  E-value=0.52  Score=43.97  Aligned_cols=28  Identities=18%  Similarity=0.258  Sum_probs=13.2

Q ss_pred             cCCeeeccCcccccccC--CCCCCCCCeEec
Q 021827            9 SLRALILNDNEIVSICK--LDQMKELNTLGM   37 (307)
Q Consensus         9 nL~aL~LS~N~IssIeg--Le~L~nL~TLdL   37 (307)
                      +|+.|.| .|.|+.|..  +..|++|++|.|
T Consensus       249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l  278 (401)
T 4fdw_A          249 GITTVKL-PNGVTNIASRAFYYCPELAEVTT  278 (401)
T ss_dssp             CCSEEEE-ETTCCEECTTTTTTCTTCCEEEE
T ss_pred             CccEEEe-CCCccEEChhHhhCCCCCCEEEe
Confidence            4455555 333444433  444555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=86.50  E-value=0.57  Score=42.38  Aligned_cols=67  Identities=16%  Similarity=0.098  Sum_probs=46.5

Q ss_pred             cccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827            5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL   71 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L   71 (307)
                      ..+.+|+.+.|.+| |+.|..  +..|.+|+++.|.+           .+.+|+.|+|-.| +.....+   ...-+++|
T Consensus       294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L  368 (394)
T 4fs7_A          294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGAN---AFQGCINL  368 (394)
T ss_dssp             TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTT---TBTTCTTC
T ss_pred             cccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHH---HhhCCCCC
Confidence            35677888888765 777765  67788888888864           5678888888766 6555542   23456777


Q ss_pred             ceecC
Q 021827           72 CIFNA   76 (307)
Q Consensus        72 ~yLDa   76 (307)
                      +.++.
T Consensus       369 ~~i~l  373 (394)
T 4fs7_A          369 KKVEL  373 (394)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            77653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=84.66  E-value=0.81  Score=36.48  Aligned_cols=49  Identities=16%  Similarity=0.202  Sum_probs=36.4

Q ss_pred             CeeeccCcccc--cccCCCCCCCCCeEecccCCCCCceEEccCCCccCccchHHHHHHhCCCCceec
Q 021827           11 RALILNDNEIV--SICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN   75 (307)
Q Consensus        11 ~aL~LS~N~Is--sIegLe~L~nL~TLdLS~~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLD   75 (307)
                      ..++.++|+|+  +|+.             .-.++|+.|+|.+|.|...+.   .+...||+|++|+
T Consensus        11 ~~v~Cs~~~L~~~~vP~-------------~lp~~l~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~   61 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPT-------------AFPVDTTELVLTGNNLTALPP---GLLDALPALRTAH   61 (130)
T ss_dssp             TEEECCSSCCCTTTSCS-------------CCCTTCSEEECTTSCCSSCCT---TTGGGCTTCCEEE
T ss_pred             CEEEeCCCCCccccCCC-------------CCCcCCCEEECCCCcCCccCh---hhhhhccccCEEE
Confidence            47888899888  8872             012468899999999988765   4556788998764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=84.04  E-value=0.89  Score=41.08  Aligned_cols=47  Identities=21%  Similarity=0.208  Sum_probs=39.6

Q ss_pred             cccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCC
Q 021827            5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGN   52 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGN   52 (307)
                      ..+.+|+.|.|.++ |+.|..  +..|.+|+.+.|..           .+.+|+.|+|..|
T Consensus       317 ~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          317 ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG
T ss_pred             cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC
Confidence            56789999999865 999976  88999999999975           6789999999654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=82.73  E-value=1.8  Score=39.15  Aligned_cols=48  Identities=21%  Similarity=0.400  Sum_probs=29.9

Q ss_pred             cccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCC
Q 021827            5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNP   53 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNP   53 (307)
                      ..|.+|+.+.|.+| |++|..  +..|.+|+.|.|.+           .+.+|++|+|.+|.
T Consensus       308 ~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          308 AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence            34566777777654 666654  66666667666653           55667777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	307
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 9/59 (15%)

Query: 13  LILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 71
           L+L +N +     +  +              L  LNLQGN + + + + +++  +LP++
Sbjct: 70  LLLCNNRLQQSAAIQPLVSCP---------RLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.65
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	99.29
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.9
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.68
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.46
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.45
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.43
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.41
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.38
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.38
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.28
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.26
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.24
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.15
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.12
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.11
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.79
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.7
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.68
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.66
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.35
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.27
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.2
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.79
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.2
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.06

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.5e-16  Score=130.02  Aligned_cols=83  Identities=19%  Similarity=0.281  Sum_probs=75.6

Q ss_pred             cccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------------------------------CCCCCceE
Q 021827            5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------------------------------YFFNLNNL   47 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------------------------------~L~nLrtL   47 (307)
                      ..|.+|+.|+|++|+|++|++++.|++|++|+|++                                     .|++|++|
T Consensus        38 ~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L  117 (162)
T d1a9na_          38 ATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL  117 (162)
T ss_dssp             GGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred             cccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchh
Confidence            45678888888888888888888888888888885                                     67999999


Q ss_pred             EccCCCccCccchHHHHHHhCCCCceecCcccChhhhhhh
Q 021827           48 NLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEK   87 (307)
Q Consensus        48 nLeGNPIak~e~YrrKI~a~LP~L~yLDarpV~e~tRe~a   87 (307)
                      +|.||||+..+.|+.++...||+|++||+.+|.+.+|.+|
T Consensus       118 ~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i~~~er~~A  157 (162)
T d1a9na_         118 CILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA  157 (162)
T ss_dssp             ECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHHHH
T ss_pred             hcCCCccccccchHHHHHHHCCCcCeeCCCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999988

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.44  E-value=1.6e-14  Score=121.12  Aligned_cols=85  Identities=26%  Similarity=0.409  Sum_probs=67.8

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCCeEeccc--------------------------------------------
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS--------------------------------------------   39 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~--------------------------------------------   39 (307)
                      |..|++|+.|+|++|+|+.|++|..|++|++|+|++                                            
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~  123 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS  123 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEES
T ss_pred             HhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            445666666666666666666666666666666663                                            


Q ss_pred             --------------CCCCCceEEccCCCccCc-------cchHHHHHHhCCCCceecCcccChhhhhhhc
Q 021827           40 --------------YFFNLNNLNLQGNPVAEY-------DKLAKKVKTLLPNLCIFNARPIDRITKNEKD   88 (307)
Q Consensus        40 --------------~L~nLrtLnLeGNPIak~-------e~YrrKI~a~LP~L~yLDarpV~e~tRe~a~   88 (307)
                                    .|++|+.|+|.||||+..       ..|+..++..||+|++||+.+|...+|..|.
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I~~~er~~A~  193 (198)
T d1m9la_         124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQAN  193 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGGTTTTTTHHH
T ss_pred             cchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccCCHHHHHHHH
Confidence                          789999999999999643       5688899999999999999999999999873

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.5e-13  Score=108.12  Aligned_cols=77  Identities=17%  Similarity=0.336  Sum_probs=67.8

Q ss_pred             cccccCCeeeccCcccccccCC----CCCCCCCeEeccc------------CCCCCceEEccCCCccC----ccchHHHH
Q 021827            5 TSVVSLRALILNDNEIVSICKL----DQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE----YDKLAKKV   64 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegL----e~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak----~e~YrrKI   64 (307)
                      ..|.+|++|+|++|+|+.+.++    ..|++|++|+||+            .+.+|+.|+|.||||+.    ...|+.+|
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            4588999999999999998775    4589999999997            55779999999999985    46799999


Q ss_pred             HHhCCCCceecCcccCh
Q 021827           65 KTLLPNLCIFNARPIDR   81 (307)
Q Consensus        65 ~a~LP~L~yLDarpV~e   81 (307)
                      ...+|+|++||+.+|..
T Consensus       142 ~~~~P~L~~LDg~~v~p  158 (162)
T d1koha1         142 RERFPKLLRLDGHELPP  158 (162)
T ss_dssp             HTTSTTCCEETTEECCC
T ss_pred             HHHCCCCCEECcCCCcC
Confidence            99999999999999853

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1.5e-12  Score=102.05  Aligned_cols=73  Identities=21%  Similarity=0.321  Sum_probs=59.4

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      .+..|++|+.|+|++|+|+.++++..|++|++|+|++             .+++|++|+|.||||+..+.|+..+...+|
T Consensus        38 ~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp  117 (124)
T d1dcea3          38 ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP  117 (124)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred             hhhhhhcccccccccccccccCccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCc
Confidence            3566777777777777777777777777777777775             668999999999999999999999999999


Q ss_pred             CCceec
Q 021827           70 NLCIFN   75 (307)
Q Consensus        70 ~L~yLD   75 (307)
                      +|+.+.
T Consensus       118 ~L~~Ll  123 (124)
T d1dcea3         118 SVSSIL  123 (124)
T ss_dssp             TCSEEE
T ss_pred             CcceEe
Confidence            998763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=6.2e-10  Score=86.86  Aligned_cols=74  Identities=18%  Similarity=0.248  Sum_probs=63.7

Q ss_pred             CccccccccCCeeeccCccccccc-CCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            1 MDDVTSVVSLRALILNDNEIVSIC-KLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         1 IDeL~~L~nL~aL~LS~N~IssIe-gLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      +.++..|.+|+.|+|++|+|+.|+ .+..|++|++|+|++          .|++|+.|+|.+|+|...+..  .....+|
T Consensus        13 l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~~~--~~l~~~~   90 (124)
T d1dcea3          13 LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI--QPLVSCP   90 (124)
T ss_dssp             CCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTT--GGGGGCT
T ss_pred             CcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCCCCc--hhhcCCC
Confidence            356889999999999999999995 599999999999997          889999999999999987763  2246789


Q ss_pred             CCceecC
Q 021827           70 NLCIFNA   76 (307)
Q Consensus        70 ~L~yLDa   76 (307)
                      +|+++|-
T Consensus        91 ~L~~L~l   97 (124)
T d1dcea3          91 RLVLLNL   97 (124)
T ss_dssp             TCCEEEC
T ss_pred             CCCEEEC
Confidence            9999884

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=8.7e-09  Score=83.34  Aligned_cols=70  Identities=20%  Similarity=0.297  Sum_probs=60.8

Q ss_pred             cccccCCeeeccCcccccccCC-CCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            5 TSVVSLRALILNDNEIVSICKL-DQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegL-e~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      .++.+|++|+|++|+|++|+++ ..|++|++|+||+          .|++|++|+|.+|.+...+.   .+...+|+|+.
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~---~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE---GLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECS---CHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCc---ccccccccccc
Confidence            4566799999999999999997 6699999999997          77999999999999998765   35567999999


Q ss_pred             ecCc
Q 021827           74 FNAR   77 (307)
Q Consensus        74 LDar   77 (307)
                      |+-.
T Consensus        92 L~L~   95 (162)
T d1a9na_          92 LILT   95 (162)
T ss_dssp             EECC
T ss_pred             ceec
Confidence            9854

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.63  E-value=1.2e-08  Score=86.88  Aligned_cols=68  Identities=18%  Similarity=0.214  Sum_probs=60.1

Q ss_pred             cccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCcee
Q 021827            5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF   74 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yL   74 (307)
                      +.|.+|++|+|++|+|++|+|++.|++|++|+|++          .|++|+.|+|.+|+|.....     ...||+|+++
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~-----l~~l~~L~~L  115 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-----LANLTNLTGL  115 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GTTCTTCCEE
T ss_pred             HHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc-----cccccccccc
Confidence            35678999999999999999999999999999996          78999999999999987654     4678999988


Q ss_pred             cCc
Q 021827           75 NAR   77 (307)
Q Consensus        75 Dar   77 (307)
                      +..
T Consensus       116 ~~~  118 (384)
T d2omza2         116 TLF  118 (384)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.62  E-value=2.2e-08  Score=81.57  Aligned_cols=64  Identities=17%  Similarity=0.235  Sum_probs=36.3

Q ss_pred             cccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCceec
Q 021827            7 VVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN   75 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLD   75 (307)
                      |.+|+.|+|++|.|++|++++.|++|++|+|++          .|++|++|+|.+|++...+.     ...+|+|++++
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~-----l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-----LANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCcccccccccccccccccc-----ccccccccccc
Confidence            455666666666666666666666666666664          45556666666666555443     23445555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.46  E-value=1.2e-07  Score=77.87  Aligned_cols=67  Identities=21%  Similarity=0.257  Sum_probs=45.9

Q ss_pred             ccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCceec
Q 021827            6 SVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN   75 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLD   75 (307)
                      .|.+|+.|++++|.|+.+.+|+.|++|++|+|++          .|++|+.|+|.+|.|...+.     ...+|+|++++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~-----l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-----LKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-----GTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccc-----ccccccccccc
Confidence            3566777777777777777777777777777775          56777777777777766543     23466777666


Q ss_pred             Cc
Q 021827           76 AR   77 (307)
Q Consensus        76 ar   77 (307)
                      ..
T Consensus       119 l~  120 (210)
T d1h6ta2         119 LE  120 (210)
T ss_dssp             CT
T ss_pred             cc
Confidence            43

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.45  E-value=1.1e-07  Score=77.90  Aligned_cols=69  Identities=20%  Similarity=0.338  Sum_probs=60.6

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      .+..+.+|+.|++++|.|+.+..+.+|++|+.|+|++          .|++|+.|+|.+|+|...+.     ...+|+|+
T Consensus       146 ~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~~-----l~~l~~L~  220 (227)
T d1h6ua2         146 PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-----LANTSNLF  220 (227)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG-----GTTCTTCC
T ss_pred             hhccccccccccccccccccchhhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCCCcc-----cccCCCCC
Confidence            4567788999999999999999999999999999986          78999999999999988764     45789999


Q ss_pred             eecC
Q 021827           73 IFNA   76 (307)
Q Consensus        73 yLDa   76 (307)
                      +||-
T Consensus       221 ~L~l  224 (227)
T d1h6ua2         221 IVTL  224 (227)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.43  E-value=1.1e-07  Score=80.85  Aligned_cols=68  Identities=19%  Similarity=0.256  Sum_probs=47.3

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      .+..+.+|+.|+|++|+|+.|..+..|++|+.|+|++          .|++|++|+|.+|++...+.     ...||+|+
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~-----l~~l~~L~  376 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP-----LANLTRIT  376 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGG-----GTTCTTCS
T ss_pred             ccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChh-----hccCCCCC
Confidence            3556677777777777777777777777777777775          56777777777777776543     34567777


Q ss_pred             eec
Q 021827           73 IFN   75 (307)
Q Consensus        73 yLD   75 (307)
                      +|+
T Consensus       377 ~L~  379 (384)
T d2omza2         377 QLG  379 (384)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.41  E-value=2e-07  Score=75.85  Aligned_cols=54  Identities=26%  Similarity=0.434  Sum_probs=27.9

Q ss_pred             ccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCc
Q 021827            4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~   57 (307)
                      +..|++|+.|+|++|+|..++.+..+++|+.|++++          .|++|+.|+|.+|+|...
T Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             cchhhhhHHhhhhhhhhcccccccccccccccccccccccCCccccCCCCCCEEECCCCCCCCC
Confidence            344455555555555555555555555555555543          445555555555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.39  E-value=2e-07  Score=76.59  Aligned_cols=55  Identities=25%  Similarity=0.398  Sum_probs=37.8

Q ss_pred             ccccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccC
Q 021827            2 DDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAE   56 (307)
Q Consensus         2 DeL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak   56 (307)
                      .+|+.|++|++|+|++|.|+.|..+..|++|++|+|++          .|++|+.|++.+|++..
T Consensus        62 ~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~  126 (210)
T d1h6ta2          62 QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD  126 (210)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC
T ss_pred             hhHhhCCCCCEEeCCCccccCccccccCccccccccccccccccccccccccccccccccccccc
Confidence            35666777777777777777777777777777777764          45566666666665544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.5e-07  Score=73.28  Aligned_cols=52  Identities=21%  Similarity=0.321  Sum_probs=38.5

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCcc
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVA   55 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIa   55 (307)
                      +..|++|+.|+|++|+|+.|..  +..+++|++|+|++           ...+|+.|+|.|||+.
T Consensus        52 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             hccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccccccCCCccc
Confidence            5667778888888888887755  67777888888875           3356778888888874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.38  E-value=1.4e-07  Score=76.41  Aligned_cols=66  Identities=23%  Similarity=0.265  Sum_probs=36.9

Q ss_pred             ccCCeeeccCccccc-ccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827            8 VSLRALILNDNEIVS-ICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC   72 (307)
Q Consensus         8 ~nL~aL~LS~N~Iss-Ieg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~   72 (307)
                      ++|++|+|++|+|+. +..  +..|++|++|+|++            .+++|+.|+|.+|.+...+..   +..-||+|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~---~F~~l~~L~  105 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK---MFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS---SSTTCTTCC
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHH---HHhCCCccc
Confidence            356666666666654 322  45566666666664            345666666666666555441   233456666


Q ss_pred             eecC
Q 021827           73 IFNA   76 (307)
Q Consensus        73 yLDa   76 (307)
                      +|+-
T Consensus       106 ~L~L  109 (192)
T d1w8aa_         106 TLNL  109 (192)
T ss_dssp             EEEC
T ss_pred             cccc
Confidence            5553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.28  E-value=8.2e-07  Score=71.70  Aligned_cols=52  Identities=27%  Similarity=0.402  Sum_probs=32.8

Q ss_pred             cccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccC
Q 021827            5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE   56 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak   56 (307)
                      ..+.+|+.|+|++|+|+.|..  +..|++|++|+|++            .+++|++|+|.|||+.-
T Consensus        75 ~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            445566666666666666654  56666666666664            45666667777776653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.26  E-value=3.5e-07  Score=74.96  Aligned_cols=69  Identities=14%  Similarity=0.251  Sum_probs=60.7

Q ss_pred             cccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCcee
Q 021827            5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF   74 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yL   74 (307)
                      ..|.+|+.|+|++|+|++|++|++|++|++|+|++          .|++|++|++.+|++...+.     ...+++|+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~-----l~~l~~L~~l  112 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA-----IAGLQSIKTL  112 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG-----GTTCTTCCEE
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccccccccccccccccccccccccc-----cccccccccc
Confidence            45789999999999999999999999999999996          78999999999999987765     3468999988


Q ss_pred             cCcc
Q 021827           75 NARP   78 (307)
Q Consensus        75 Darp   78 (307)
                      +...
T Consensus       113 ~l~~  116 (227)
T d1h6ua2         113 DLTS  116 (227)
T ss_dssp             ECTT
T ss_pred             cccc
Confidence            7654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4.9e-07  Score=76.15  Aligned_cols=66  Identities=21%  Similarity=0.296  Sum_probs=50.9

Q ss_pred             ccCCeeeccCcccccccC--CCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCceec
Q 021827            8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN   75 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLD   75 (307)
                      ++|+.|+|++|.|+.|..  +..|++|++|+|++          .|++|++|+|.+|++...+.    ....+|+|++|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL----LGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCC----CTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccccccc----cccccccccccc
Confidence            468888888888888863  78888888888886          67888888888888876544    234678888877


Q ss_pred             Cc
Q 021827           76 AR   77 (307)
Q Consensus        76 ar   77 (307)
                      ..
T Consensus       107 l~  108 (266)
T d1p9ag_         107 VS  108 (266)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=7e-07  Score=75.19  Aligned_cols=71  Identities=17%  Similarity=0.116  Sum_probs=57.6

Q ss_pred             cccccccCCeeeccCcccccccCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827            3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL   71 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L   71 (307)
                      .+..|++|++|+|++|+|+.|+.+..|++|++|+|++           .+++|+.|+|.+|.+.....   .....+++|
T Consensus        50 ~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~l  126 (266)
T d1p9ag_          50 TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL---GALRGLGEL  126 (266)
T ss_dssp             GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS---STTTTCTTC
T ss_pred             Hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeec---ccccccccc
Confidence            3567888999999999999999888899999999986           67889999999999887654   233567777


Q ss_pred             ceecC
Q 021827           72 CIFNA   76 (307)
Q Consensus        72 ~yLDa   76 (307)
                      .+|+.
T Consensus       127 ~~L~l  131 (266)
T d1p9ag_         127 QELYL  131 (266)
T ss_dssp             CEEEC
T ss_pred             ccccc
Confidence            77764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=9.4e-07  Score=70.70  Aligned_cols=57  Identities=19%  Similarity=0.262  Sum_probs=50.0

Q ss_pred             cccccccCCeeeccCc-ccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccc
Q 021827            3 DVTSVVSLRALILNDN-EIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N-~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~   59 (307)
                      .+..+++|++|+|++| .|+.|..  |..|++|+.|+|++            .+++|++|+|++|.+...+.
T Consensus        26 ~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~   97 (156)
T d2ifga3          26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW   97 (156)
T ss_dssp             TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccCh
Confidence            4667889999999766 5999985  89999999999997            77999999999999998765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.12  E-value=1.7e-06  Score=71.81  Aligned_cols=51  Identities=24%  Similarity=0.297  Sum_probs=44.8

Q ss_pred             cccCCeeeccCcccccccCCCCCCCCCeEeccc--------CCCCCceEEccCCCccCccc
Q 021827            7 VVSLRALILNDNEIVSICKLDQMKELNTLGMDS--------YFFNLNNLNLQGNPVAEYDK   59 (307)
Q Consensus         7 L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~--------~L~nLrtLnLeGNPIak~e~   59 (307)
                      +++|++|+|++|+|++|+.  .+++|+.|+|++        .+++|+.|+|++||+.+.+.
T Consensus       283 ~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC
T ss_pred             CCCCCEEECCCCccCcccc--ccCCCCEEECCCCcCCccccccCCCCEEECcCCcCCCCCc
Confidence            5789999999999999984  478999999996        45789999999999998876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=1.7e-06  Score=72.99  Aligned_cols=52  Identities=25%  Similarity=0.353  Sum_probs=32.7

Q ss_pred             ccccccCCeeeccCccccccc-CCCCCCCCCeEeccc------------------CCCCCceEEccCCCcc
Q 021827            4 VTSVVSLRALILNDNEIVSIC-KLDQMKELNTLGMDS------------------YFFNLNNLNLQGNPVA   55 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIe-gLe~L~nL~TLdLS~------------------~L~nLrtLnLeGNPIa   55 (307)
                      +..+++|++|+|++|.|++|+ .|..|++|+.|+|++                  .+.+|+.|+|.|||+.
T Consensus       215 ~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         215 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             GGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            345666666666666666664 366666666666664                  2355666666666664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.79  E-value=1.3e-05  Score=66.39  Aligned_cols=63  Identities=21%  Similarity=0.243  Sum_probs=44.6

Q ss_pred             ccCCeeeccCcccccccCCCCCCCCCeEeccc-------CC-CCCceEEccCCCccCccchHHHHHHhCCCCceecCc
Q 021827            8 VSLRALILNDNEIVSICKLDQMKELNTLGMDS-------YF-FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR   77 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------~L-~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLDar   77 (307)
                      ++|++|+|++|+|++|+.+  +.+|+.|+|++       .+ +.|+.|+|.+|.+...+.+     ..+++|++|+..
T Consensus        58 ~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~~lp~~-----~~l~~L~~L~l~  128 (353)
T d1jl5a_          58 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL-----QNSSFLKIIDVD  128 (353)
T ss_dssp             TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCC-----TTCTTCCEEECC
T ss_pred             CCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhhccccccccccccccccccch-----hhhccceeeccc
Confidence            5678888888888877653  45777777775       33 4588888888888776652     457888888753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.9e-05  Score=66.22  Aligned_cols=67  Identities=21%  Similarity=0.235  Sum_probs=38.5

Q ss_pred             ccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827            6 SVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL   71 (307)
Q Consensus         6 ~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L   71 (307)
                      .+.+|+.|+|++|+|+.|..  +..+++|..|+|++            .+++|++|+|.+|.+...+.   .+...+|.|
T Consensus       151 ~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~---~~~~~~~~L  227 (284)
T d1ozna_         151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT---EALAPLRAL  227 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH---HHHTTCTTC
T ss_pred             cccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccc---ccccccccc
Confidence            44556666666666665543  55556666666553            44666666666666665544   334456666


Q ss_pred             ceec
Q 021827           72 CIFN   75 (307)
Q Consensus        72 ~yLD   75 (307)
                      ++|+
T Consensus       228 ~~L~  231 (284)
T d1ozna_         228 QYLR  231 (284)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            6654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.70  E-value=8.6e-06  Score=68.97  Aligned_cols=71  Identities=20%  Similarity=0.233  Sum_probs=45.9

Q ss_pred             cccccccCCeeeccC-cccc-ccc-CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHh
Q 021827            3 DVTSVVSLRALILND-NEIV-SIC-KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTL   67 (307)
Q Consensus         3 eL~~L~nL~aL~LS~-N~Is-sIe-gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~   67 (307)
                      +|..|++|++|+|++ |+|+ .|+ .+.+|++|++|+|++            .+..|+.|++.+|.+.....   .....
T Consensus        71 ~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p---~~l~~  147 (313)
T d1ogqa_          71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP---PSISS  147 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC---GGGGG
T ss_pred             HHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCc---hhhcc
Confidence            566777777777775 6666 554 377777777777775            45667777777776654322   12345


Q ss_pred             CCCCceecC
Q 021827           68 LPNLCIFNA   76 (307)
Q Consensus        68 LP~L~yLDa   76 (307)
                      +|.|++++.
T Consensus       148 l~~L~~l~l  156 (313)
T d1ogqa_         148 LPNLVGITF  156 (313)
T ss_dssp             CTTCCEEEC
T ss_pred             Ccccceeec
Confidence            667766664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.68  E-value=2.2e-05  Score=66.02  Aligned_cols=62  Identities=24%  Similarity=0.271  Sum_probs=52.0

Q ss_pred             ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827            8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI   73 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y   73 (307)
                      ++|+.|+|++|+|+.|+.  +..|++|++|++++            .|++|++|+|.+|.+...+.+      +.+.|..
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~------~~~~l~~  104 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK------MPKTLQE  104 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS------CCTTCCE
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc------hhhhhhh
Confidence            679999999999999974  89999999999996            679999999999999887653      2455555


Q ss_pred             ec
Q 021827           74 FN   75 (307)
Q Consensus        74 LD   75 (307)
                      |+
T Consensus       105 L~  106 (305)
T d1xkua_         105 LR  106 (305)
T ss_dssp             EE
T ss_pred             hh
Confidence            54

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.66  E-value=6.4e-06  Score=69.80  Aligned_cols=51  Identities=24%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             cccccCCeeeccCcccc-cccCCCCCCCCCeEeccc------------CCCCCceEEccCCCcc
Q 021827            5 TSVVSLRALILNDNEIV-SICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVA   55 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~Is-sIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIa   55 (307)
                      ..+.+|+.|++++|.++ .++.+..+++|+.|+|++            .|++|++|+|.+|.++
T Consensus       218 ~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            45566666666666665 344456666666666664            4566666666666665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=3.3e-05  Score=64.75  Aligned_cols=53  Identities=25%  Similarity=0.308  Sum_probs=47.7

Q ss_pred             ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccC
Q 021827            4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE   56 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak   56 (307)
                      +..+++|+.|+|++|+|+.|..  +..+++|++|+|++            .+++|+.|+|.|||+.-
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            4678999999999999999844  89999999999997            78999999999999963

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=4.3e-05  Score=65.20  Aligned_cols=72  Identities=21%  Similarity=0.158  Sum_probs=52.3

Q ss_pred             cccccCCeeeccCccccc--ccC-CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827            5 TSVVSLRALILNDNEIVS--ICK-LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP   69 (307)
Q Consensus         5 ~~L~nL~aL~LS~N~Iss--Ieg-Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP   69 (307)
                      ....+|+.|+|+++.|+.  +.. +..+++|++|.|++            ++++|++|+|.+++-..... ...+...+|
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~-l~~l~~~~~  121 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA-LQTLLSSCS  121 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH-HHHHHHHCT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccc-cchhhHHHH
Confidence            345678899999888763  444 67788889998886            77889999998876544333 234566788


Q ss_pred             CCceecCc
Q 021827           70 NLCIFNAR   77 (307)
Q Consensus        70 ~L~yLDar   77 (307)
                      +|++|+-.
T Consensus       122 ~L~~L~ls  129 (284)
T d2astb2         122 RLDELNLS  129 (284)
T ss_dssp             TCCEEECC
T ss_pred             hccccccc
Confidence            99888754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=2.8e-05  Score=65.98  Aligned_cols=73  Identities=18%  Similarity=0.177  Sum_probs=50.7

Q ss_pred             ccccccCCeeeccCccccc-----cc-CCCCCCCCCeEeccc-------------C----CCCCceEEccCCCccCccc-
Q 021827            4 VTSVVSLRALILNDNEIVS-----IC-KLDQMKELNTLGMDS-------------Y----FFNLNNLNLQGNPVAEYDK-   59 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~Iss-----Ie-gLe~L~nL~TLdLS~-------------~----L~nLrtLnLeGNPIak~e~-   59 (307)
                      +..|.+|++|+|++|+|+.     |. .|..+++|++|+|++             .    ..+|++|+|.+|.|....- 
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~  102 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  102 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccc
Confidence            3567888999999998873     22 257788889999986             1    2479999999998865532 


Q ss_pred             hHHHHHHhCCCCceecC
Q 021827           60 LAKKVKTLLPNLCIFNA   76 (307)
Q Consensus        60 YrrKI~a~LP~L~yLDa   76 (307)
                      .....+..+|+|++|+.
T Consensus       103 ~l~~~l~~~~~L~~L~L  119 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHL  119 (460)
T ss_dssp             HHHHHTTSCTTCCEEEC
T ss_pred             cccchhhcccccccccc
Confidence            11122345788888874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00013  Score=62.22  Aligned_cols=76  Identities=24%  Similarity=0.291  Sum_probs=54.0

Q ss_pred             cccccCCeeeccCc-ccc--cccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827            5 TSVVSLRALILNDN-EIV--SICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL   68 (307)
Q Consensus         5 ~~L~nL~aL~LS~N-~Is--sIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L   68 (307)
                      ..+++|+.|+|++| .|+  .+..|.++++|++|+|++             .+++|+.|+|.|+ +..  .-...+...+
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d--~~l~~l~~~l  248 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEAL  248 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHS
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCH--HHHHHHHHhC
Confidence            45678999999885 464  666678888899999985             6688999999887 332  2235666788


Q ss_pred             CCCceecCcccChhhh
Q 021827           69 PNLCIFNARPIDRITK   84 (307)
Q Consensus        69 P~L~yLDarpV~e~tR   84 (307)
                      |+|++ +..++....|
T Consensus       249 p~L~i-~~~~ls~~~~  263 (284)
T d2astb2         249 PHLQI-NCSHFTTIAR  263 (284)
T ss_dssp             TTSEE-SCCCSCCTTC
T ss_pred             ccccc-cCccCCCCCC
Confidence            99886 4455554433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.32  E-value=0.0001  Score=63.16  Aligned_cols=14  Identities=36%  Similarity=0.477  Sum_probs=6.8

Q ss_pred             CCCceEEccCCCcc
Q 021827           42 FNLNNLNLQGNPVA   55 (307)
Q Consensus        42 ~nLrtLnLeGNPIa   55 (307)
                      +.|++|+|++|.|.
T Consensus       273 ~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         273 IGLQTLRLQYNEIE  286 (344)
T ss_dssp             CCCCEEECCSSCCB
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.27  E-value=2.1e-05  Score=64.81  Aligned_cols=55  Identities=29%  Similarity=0.485  Sum_probs=46.6

Q ss_pred             cccccccCCeeeccCccccccc---CCCCCCCCCeEeccc----------------------CCCCCceEEccCCCccCc
Q 021827            3 DVTSVVSLRALILNDNEIVSIC---KLDQMKELNTLGMDS----------------------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         3 eL~~L~nL~aL~LS~N~IssIe---gLe~L~nL~TLdLS~----------------------~L~nLrtLnLeGNPIak~   57 (307)
                      .+..|++|+.|+|++|+|+.+.   .|..|++|+.|+|++                      .||+|+.|+  |.||...
T Consensus       110 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~~~  187 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD  187 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGTTT
T ss_pred             cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCCHH
Confidence            4567899999999999998775   488999999999995                      578998865  9999877


Q ss_pred             cc
Q 021827           58 DK   59 (307)
Q Consensus        58 e~   59 (307)
                      +.
T Consensus       188 er  189 (198)
T d1m9la_         188 ER  189 (198)
T ss_dssp             TT
T ss_pred             HH
Confidence            65

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00016  Score=58.39  Aligned_cols=67  Identities=15%  Similarity=0.177  Sum_probs=47.8

Q ss_pred             ccCCeeeccCcccccccC--CCCCCCCCeEeccc-------------CCCCCceEEccC-CCccCccchHHHHHHhCCCC
Q 021827            8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS-------------YFFNLNNLNLQG-NPVAEYDKLAKKVKTLLPNL   71 (307)
Q Consensus         8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-------------~L~nLrtLnLeG-NPIak~e~YrrKI~a~LP~L   71 (307)
                      .+|++|+|++|.|++|+.  +..|++|++|+|++             .+++|..|.+.+ |.+.....   ....-+|+|
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~---~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP---EAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT---TSEECCTTC
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc---ccccccccc
Confidence            479999999999999876  78899999999985             456777777653 55544332   223446777


Q ss_pred             ceecCc
Q 021827           72 CIFNAR   77 (307)
Q Consensus        72 ~yLDar   77 (307)
                      ++++..
T Consensus       106 ~~l~l~  111 (242)
T d1xwdc1         106 QYLLIS  111 (242)
T ss_dssp             CEEEEE
T ss_pred             cccccc
Confidence            777653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00031  Score=59.41  Aligned_cols=71  Identities=18%  Similarity=0.111  Sum_probs=47.4

Q ss_pred             ccccCCeeeccCccccc-----c-cCCC-CCCCCCeEeccc----------------CCCCCceEEccCCCccCccc--h
Q 021827            6 SVVSLRALILNDNEIVS-----I-CKLD-QMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDK--L   60 (307)
Q Consensus         6 ~L~nL~aL~LS~N~Iss-----I-egLe-~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~--Y   60 (307)
                      .+.+|++|+|++|+|+.     | +.|. ....|++|+|++                .+++|+.|+|.+|+|....-  .
T Consensus       338 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l  417 (460)
T d1z7xw1         338 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL  417 (460)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHH
T ss_pred             cccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHH
Confidence            45689999999999864     3 2243 466799999996                45889999999999875322  1


Q ss_pred             HHHHHHhCCCCceecC
Q 021827           61 AKKVKTLLPNLCIFNA   76 (307)
Q Consensus        61 rrKI~a~LP~L~yLDa   76 (307)
                      ...+......|++++-
T Consensus       418 ~~~l~~~~~~L~~l~l  433 (460)
T d1z7xw1         418 VESVRQPGCLLEQLVL  433 (460)
T ss_dssp             HHHHTSTTCCCCEEEC
T ss_pred             HHHHHhCCCccCEEEC
Confidence            1122222335776665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=7.2e-05  Score=59.47  Aligned_cols=36  Identities=31%  Similarity=0.385  Sum_probs=16.7

Q ss_pred             CCCCCceEEccCCCccCccchHHHHHHhCCCCceecC
Q 021827           40 YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA   76 (307)
Q Consensus        40 ~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLDa   76 (307)
                      .+++|++|+|++|-|...... ......||+|++||.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~-~~~~~~l~~L~~L~L   98 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDM-SSIVQKAPNLKILNL   98 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGG-GTHHHHSTTCCCCCC
T ss_pred             hCCCCCEeeCCCccccCCchh-HHHHhhCCccccccc
Confidence            345555555555555544331 122234555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00025  Score=57.18  Aligned_cols=35  Identities=9%  Similarity=-0.122  Sum_probs=21.7

Q ss_pred             CCCCCceEEccCCCccCccchHHHHHHhCCCCceecCc
Q 021827           40 YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR   77 (307)
Q Consensus        40 ~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLDar   77 (307)
                      .+++|+.|+|.+|+|...+.+   ...-|+.|++++..
T Consensus       199 ~l~~L~~L~Ls~N~l~~l~~~---~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         199 GASGPVILDISRTRIHSLPSY---GLENLKKLRARSTY  233 (242)
T ss_dssp             TSCCCSEEECTTSCCCCCCSS---SCTTCCEEESSSEE
T ss_pred             CCCCCCEEECCCCcCCccCHH---HHcCCcccccCcCC
Confidence            457777777777777766552   23455666666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.70  E-value=0.0011  Score=56.44  Aligned_cols=74  Identities=14%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             ccccccCCeeeccCccccc-----cc-CCCCCCCCCeEeccc----------------------CCCCCceEEccCCCcc
Q 021827            4 VTSVVSLRALILNDNEIVS-----IC-KLDQMKELNTLGMDS----------------------YFFNLNNLNLQGNPVA   55 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~Iss-----Ie-gLe~L~nL~TLdLS~----------------------~L~nLrtLnLeGNPIa   55 (307)
                      |....+|++|+|++|+|..     |+ .|..+++|++|.|++                      .+++|+.|+|.+|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            4567889999999999853     43 478889999999974                      5688999999999987


Q ss_pred             Cccc-hHHHHHHhCCCCceecCc
Q 021827           56 EYDK-LAKKVKTLLPNLCIFNAR   77 (307)
Q Consensus        56 k~e~-YrrKI~a~LP~L~yLDar   77 (307)
                      ...- ........+|+|+.|+..
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~  129 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLH  129 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECC
T ss_pred             cccccchhhhhcccccchheecc
Confidence            6422 122344568999988754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.20  E-value=0.0021  Score=50.92  Aligned_cols=69  Identities=13%  Similarity=0.167  Sum_probs=48.8

Q ss_pred             ccccCCeeeccC-ccccc-----cc-CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccchHH
Q 021827            6 SVVSLRALILND-NEIVS-----IC-KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDKLAK   62 (307)
Q Consensus         6 ~L~nL~aL~LS~-N~Iss-----Ie-gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~Yrr   62 (307)
                      +.++|++|+|++ |.|+.     |. .|...+.|++|+|++                ..+.|+.|+|.+|+|....-  .
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~--~   90 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL--A   90 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH--H
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH--H
Confidence            347799999987 45652     22 377788899999996                55889999999998876432  3


Q ss_pred             HHHHhC---CCCceecC
Q 021827           63 KVKTLL---PNLCIFNA   76 (307)
Q Consensus        63 KI~a~L---P~L~yLDa   76 (307)
                      .+...|   ++|+.|+-
T Consensus        91 ~l~~aL~~n~sL~~L~l  107 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKA  107 (167)
T ss_dssp             HHHHHTTTTCCCSEEEC
T ss_pred             HHHHHHHhCCcCCEEEC
Confidence            344444   66887765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.08  E-value=0.0043  Score=49.04  Aligned_cols=81  Identities=7%  Similarity=0.019  Sum_probs=59.1

Q ss_pred             ccccccCCeeeccCccccc-----cc-CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCcc---
Q 021827            4 VTSVVSLRALILNDNEIVS-----IC-KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYD---   58 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~Iss-----Ie-gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e---   58 (307)
                      |...++|+.|+|++|.|..     |. -|...+.|+.|+|+.                ..+.|+.|+|.+|-+....   
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            4556789999999999973     22 256788999999996                5588999999999765431   


Q ss_pred             -chHHHHHHhCCCCceecCcccChhhh
Q 021827           59 -KLAKKVKTLLPNLCIFNARPIDRITK   84 (307)
Q Consensus        59 -~YrrKI~a~LP~L~yLDarpV~e~tR   84 (307)
                       ......+..-|+|+.|+........+
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~~~~~  146 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFASMEAR  146 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCCHHHH
T ss_pred             HHHHHHHHHhCCCccEeeCcCCCchHH
Confidence             11233445679999998877665544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.08  E-value=0.012  Score=45.68  Aligned_cols=52  Identities=17%  Similarity=0.192  Sum_probs=29.8

Q ss_pred             ccccCCeeeccC-cccc-----cccC-CCCCCCCCeEeccc----------------CCCCCceEEccCCCccCc
Q 021827            6 SVVSLRALILND-NEIV-----SICK-LDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEY   57 (307)
Q Consensus         6 ~L~nL~aL~LS~-N~Is-----sIeg-Le~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~   57 (307)
                      ..++|+.|.|++ |.|+     .|+. |..++.|++|+|++                ..+.|+.|+|.+|++...
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            345677777776 4454     1222 45666677777775                345566666666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.06  E-value=0.016  Score=44.99  Aligned_cols=80  Identities=13%  Similarity=0.145  Sum_probs=54.2

Q ss_pred             ccccccCCeeeccCcccc-----cccC-CCCCCCCCeEeccc----------------CCCCCceEEc--cCCCccCc-c
Q 021827            4 VTSVVSLRALILNDNEIV-----SICK-LDQMKELNTLGMDS----------------YFFNLNNLNL--QGNPVAEY-D   58 (307)
Q Consensus         4 L~~L~nL~aL~LS~N~Is-----sIeg-Le~L~nL~TLdLS~----------------~L~nLrtLnL--eGNPIak~-e   58 (307)
                      +...++|++|+|++|+|+     .|.. |..++.|+.|+|+.                ..++|+.|+|  .+|++... .
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            456778999999999986     2333 56778889999985                6688887555  56777543 2


Q ss_pred             chHHHHHHhCCCCceecCcccChhh
Q 021827           59 KLAKKVKTLLPNLCIFNARPIDRIT   83 (307)
Q Consensus        59 ~YrrKI~a~LP~L~yLDarpV~e~t   83 (307)
                      .+.-..+...|+|+.|+...-....
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~~~~~  146 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFTQQGP  146 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHhCCCcCEEeCcCCCCcH
Confidence            2233444578899988876544433