Citrus Sinensis ID: 021845

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MNHVLQSSPVRASNSLMTMMMAATPSSPPPSISFPRRTFLFFSSTTSTALSLPSPPAPTPDTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPNATTKPSLSPTLP
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHccccccccccccccccccccEEEEEEEccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHHcccccccccccEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccEEEEccccccccccccccEEEEEEccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHccccccccEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccHcccccccccEEEEEEEEcccccccccEEEEEccccccccEEEEEEccccccHHHHHHHHHHcccccccccEEEEEEcccEEEEccccccccccccccccccccccccccccccccccEEccccccEEEEccccccccccEEEccccccEEEEEEEcccccccHcccccEEEEEEEcHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHccccccccccEEEEEEccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnhvlqsspvrasNSLMTMMMaatpsspppsisfprrtflffssttstalslpsppaptpdttitdsifmdfslcptffrpegtdptlcsspvplGRLIIGlyghlapitvsNFKAMCSSRSLYRNTLvhkifpgqfflagrqglsrrdsklgelhppldflppntdtlrpnafllkhsrggvvslclsendddpdvkldphyrnveflittgpgpcpqldnknivFGTVLQGLDVVAAIasiptykpserIQKYNELAAFIGDKRADTARAIwnrplktvyisdcgelklkpnattkpslsptlp
Flexible Loop (DISEMBL)
mnhvlqsspVRASNSLMTMMMAATPSSPPPSISFPRRTFLFFSSTTstalslpsppaPTPDTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGElhppldflppntDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASiptykpseriQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCgelklkpnattkpslsptlp
Low Complexity Region (SEG)
MNHVLQSSPVRASNslmtmmmaatpsspppsIsfprrtflffssttstalslpsppaptpdttitdsifMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPNATTKPSLSPTLP
Disordered region (IsUnstruct)
***************************************************************ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQG****************FL****DTLRPNAFLLKHSRGGVVSLCLSEN****DVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK****************
Disordered Region (DISOPRED)
*************************************TFLFFSSTTST****************TDSIFMDFSLCPTFFRPEGTDP***SSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASI**********KYNELAAFIGDKRADTA**IWNRPLKTVYISDCGELK****************
Disordered Region (DISEMBL)
*********VRASNSLMTMMMAATPSSPPPSISFPRRTFLFFSST*************TPDTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPNAT**********
Disordered Region (DISPRO)
******SSPVRASNSLMTMMMAATPSSPPPSISFPRRTFLFFSSTTSTALSLPSPPAPTPDTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKL***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNHVLQSSPVRASNSLMTMMMAATPSSPPPSISFPRRTFLFFSSTTSTALSLPSPPAPTPDTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPNATTKPSLSPTLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	306	2.2.26 [Sep-21-2011]
O93826	226	Peptidyl-prolyl cis-trans	N/A	no	0.539	0.730	0.274	3e-14
Q8X166	212	Peptidyl-prolyl cis-trans	yes	no	0.673	0.971	0.260	5e-14
Q4WP12	209	Peptidyl-prolyl cis-trans	yes	no	0.450	0.660	0.303	2e-12
Q01490	203	Peptidyl-prolyl cis-trans	N/A	no	0.519	0.783	0.282	2e-12
B3A0R0	206	Putative peptidyl-prolyl	N/A	no	0.529	0.786	0.262	3e-12
Q5B4R3	214	Peptidyl-prolyl cis-trans	yes	no	0.637	0.911	0.248	7e-12
Q2UGK2	192	Peptidyl-prolyl cis-trans	yes	no	0.473	0.755	0.293	9e-12
Q6C4W6	228	Peptidyl-prolyl cis-trans	no	no	0.503	0.675	0.278	9e-12
P35176	225	Peptidyl-prolyl cis-trans	yes	no	0.477	0.648	0.294	1e-11
Q9TW32	197	Peptidyl-prolyl cis-trans	yes	no	0.545	0.847	0.263	2e-11

>sp|O93826|PPIB_ARTBE Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 90/215 (41%), Gaps = 50/215 (23%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+++GLYG   P T  NF+A+ +      Y  +  H++    F + G    +  D  
Sbjct: 47  PLGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIK-DFMIQGGD-FTNGDGT 104

Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F L+H++ GV+S+  +  D +            +F IT
Sbjct: 105 GGKSIYGNKFEDEN--------FKLRHTKKGVLSMANAGKDTN----------GSQFFIT 146

Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG VL+G D+V  I  +P                          +
Sbjct: 147 T--AITAWLDGKHVVFGEVLEGYDIVDKIQVVP--------------------------K 178

Query: 272 AIWNRPLKTVYISDCGELKLKPNATTKPSLSPTLP 306
              +RP K V I  CGEL +K  A  + + SP+ P
Sbjct: 179 GFQDRPTKDVKIVKCGELDMKEEAEGEGTESPSKP 213

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Arthroderma benhamiae (taxid: 63400)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q8X166|PPIB_ASPNG Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 109/273 (39%), Gaps = 67/273 (24%)

Query: 36  RRTFLFFSSTTSTALSLPSPPAPTPDT-TITDSIFMDFSLCPTFFRPEGTDPTLCSSPVP 94
           +  FL F    +  L+L       P    IT  +F D                +     P
Sbjct: 4   KNIFLSFFFVLAVGLALVHAEDAQPRGPKITSKVFFD----------------IEHGDKP 47

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
           LGR+++GLYG   P T  NF+A+ +      Y  +  H++    F + G    +R D   
Sbjct: 48  LGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIK-DFMIQGGD-FTRGDGTG 105

Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
           G+      F   N        F L+H+R G++S+  +  D +            +F ITT
Sbjct: 106 GKSIYGEKFADEN--------FKLRHTRKGLLSMANAGKDTNGS----------QFFITT 147

Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARA 272
            P   P LD +++VFG VL+G ++VA I ++P                     R+D    
Sbjct: 148 VP--TPWLDGRHVVFGEVLEGYEIVAQIENVPK-------------------GRSD---- 182

Query: 273 IWNRPLKTVYISDCGELKLKPNATTKPSLSPTL 305
              RP++TV I   GEL+ +  A  K S    L
Sbjct: 183 ---RPVETVKIVKSGELESEDKAGEKGSSHEEL 212

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Aspergillus niger (taxid: 5061)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4WP12|PPIB_ASPFU Peptidyl-prolyl cis-trans isomerase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cpr2 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 27/165 (16%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+++GLYG   P T  NF+A+ +      Y  +  H++    F + G    +R D  
Sbjct: 48  PLGRIVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIK-SFMIQGGD-FTRGDGT 105

Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F L+H+R G++S+  +  D +            +F IT
Sbjct: 106 GGKSIYGEKFADEN--------FKLRHTRKGLLSMANAGKDTNGS----------QFFIT 147

Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTY---KPSERIQ 253
           T   P P LD +++VFG VL+G +VV  I ++P     KP+E ++
Sbjct: 148 T--VPTPWLDGRHVVFGEVLEGYEVVEQIENVPKGPGDKPAETVK 190

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q01490|PPIB_ORPSP Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 91/209 (43%), Gaps = 50/209 (23%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
           LGR+++GLYG + P TV NF+A+ +      Y+N+  H++    F + G    +R D   
Sbjct: 43  LGRIVLGLYGEVVPKTVENFRALATGEKGYGYKNSKFHRVIK-DFMIQGGD-FTRGDGTG 100

Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
           G+      F   N        F L+H+  G++S+  +  D +            +F ITT
Sbjct: 101 GKSIYGERFADEN--------FKLRHTGPGILSMANAGRDTNGS----------QFFITT 142

Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARA 272
                  LD +++VFG V++G+DVV AI +  T  P +                      
Sbjct: 143 --VTTSWLDGRHVVFGKVIEGMDVVTAIETTKTL-PGD---------------------- 177

Query: 273 IWNRPLKTVYISDCGELKLKPNATTKPSL 301
              RP   V I+DCGEL +  N   K  L
Sbjct: 178 ---RPATPVIIADCGELPVSNNNDAKAEL 203

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Orpinomyces sp. (strain PC-2) (taxid: 50059)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|B3A0R0|PPI_LOTGI Putative peptidyl-prolyl cis-trans isomerase OS=Lottia gigantea PE=1 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 51/213 (23%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNT--LVHKIFPGQFFLAGRQGLSRRDSK 151
           P+GR+++GL+G++ P T  NF  +C+ ++ Y  T    H++ P +F + G    ++ D  
Sbjct: 37  PIGRIVMGLFGNVVPRTTENFYQLCTGQNGYGYTGSKFHRVIP-KFMIQGGD-FTKGDGT 94

Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F L+H   G +S+  +  D +            +F +T
Sbjct: 95  GGKSIYGAKFADEN--------FQLEHYGAGWLSMANAGQDANES----------QFFVT 136

Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T    CP LD +++VFG VL+G+D+V  I  +PT                      D+  
Sbjct: 137 TVK--CPWLDGRHVVFGKVLEGMDIVKHIEQMPT----------------------DST- 171

Query: 272 AIWNRPLKTVYISDCGELKLK-PNATTKPSLSP 303
              +RP++ V IS+ G ++L  P A  K  +  
Sbjct: 172 ---DRPIEDVVISESGAIELDTPFAVDKTGVGA 201

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Lottia gigantea (taxid: 225164)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5B4R3|PPIB_EMENI Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cpr2 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 67/262 (25%)

Query: 40  LFFSSTTSTALSLPSPPAPTPDT-TITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRL 98
           LF S     AL L    A  P    IT+ ++ D                +      LGR+
Sbjct: 7   LFLSFFLVVALGLALVNASEPRGPKITNKVYFD----------------IQHGDESLGRI 50

Query: 99  IIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELH 156
           ++GLYG   P T  NF+A+ +      Y  +  H++    F + G    +R D   G+  
Sbjct: 51  VLGLYGKTVPETAENFRALATGEKGFGYEGSNFHRVIK-DFMIQGGD-FTRGDGTGGKSI 108

Query: 157 PPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGP 216
               F   N        F L+H++ G++S+  +  D +            +F ITT    
Sbjct: 109 YGAKFKDEN--------FKLRHTKTGLLSMANAGKDTNGS----------QFFITTAV-- 148

Query: 217 CPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNR 276
            P LD K++VFG VL+G D+V  I ++P  +                           +R
Sbjct: 149 TPWLDGKHVVFGEVLEGYDIVDKIQNVPKGRN--------------------------DR 182

Query: 277 PLKTVYISDCGELKLKPNATTK 298
           PLK V I   GEL+++ +   +
Sbjct: 183 PLKDVKIVKSGELEMEADVANE 204

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q2UGK2|PPIB_ASPOR Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cpr2 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 29/174 (16%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+++GLYG   P T  NF+A+ +      Y  +  H++   +F + G    +R D  
Sbjct: 32  PLGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIK-EFMIQGGD-FTRGDGT 89

Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F ++H++ G++S+  +  D +            +F IT
Sbjct: 90  GGKSIYGEKFKDEN--------FKIRHTKKGLLSMANAGKDTNGS----------QFFIT 131

Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTY---KPSE--RIQKYNELAA 260
           T     P LD +++VFG VL+G +VV AI ++P     KP +  +I K  EL +
Sbjct: 132 T--VATPWLDGRHVVFGEVLEGYEVVEAIENVPKVPGDKPQQVVKIVKSGELES 183

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q6C4W6|PPIB_YARLI Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CPR2 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 40/194 (20%)

Query: 54  SPPAPTPDTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSN 113
            P    PD  IT  ++ D                +      LG++++GLYG + P TV N
Sbjct: 20  QPAQAEPDAEITHKVYFD----------------IKQGEESLGKIVMGLYGDVVPKTVEN 63

Query: 114 FKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP 171
           F+A+C+  +   Y+ +  H++    F + G    +R D   GE      F   N      
Sbjct: 64  FRALCTGETGKGYKGSKFHRVIK-NFMIQGGD-FTRGDGTGGESIYGRKFPDEN------ 115

Query: 172 NAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVL 231
             F LKH++   +S+  +  D +            +F ITT       LD K++VFG VL
Sbjct: 116 --FQLKHTKPYKLSMANAGRDTN----------GSQFFITT--VVTSWLDGKHVVFGEVL 161

Query: 232 QGLDVVAAIASIPT 245
           +G D+V AI + PT
Sbjct: 162 EGQDIVDAIENAPT 175

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P35176|CYPD_YEAST Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CPR5 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 89/207 (42%), Gaps = 61/207 (29%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRS---LYRNTLVHKIFPGQFFLAG-----RQGLS 146
           +GR+++GLYG   P TV NF  +  SR     Y N++ H++ P  F + G     R G+ 
Sbjct: 47  IGRIVMGLYGLTTPQTVENFYQLTISRDPKMGYLNSIFHRVIP-NFMIQGGDFTHRSGIG 105

Query: 147 RRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNV 206
            + S  G             +T +   F +KH + G +S+               +    
Sbjct: 106 GK-SIFG-------------NTFKDENFDVKHDKPGRLSMA----------NRGKNTNGS 141

Query: 207 EFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKR 266
           +F ITT P  CP LD K++VFG VL G+DVV  I ++ T                  D R
Sbjct: 142 QFFITTVP--CPWLDGKHVVFGEVLDGMDVVHYIENVKT------------------DSR 181

Query: 267 ADTARAIWNRPLKTVYISDCGELKLKP 293
                   N P+K V I + GEL+  P
Sbjct: 182 --------NMPVKEVIIVESGELETVP 200

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TW32|PPIB_DICDI Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 90/216 (41%), Gaps = 49/216 (22%)

Query: 39  FLFFSSTTSTALSLPSPPAPTPDTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRL 98
           F+  +    T  ++PS     P   IT+ +F D  +                   P GR+
Sbjct: 5   FVVLAIVLVTLWAMPSEAGKDPK--ITNKVFFDIEI----------------DNKPAGRI 46

Query: 99  IIGLYGHLAPITVSNFKAMCSSRS---------LYRNTLVHKIFPGQFFLAGRQGLSRRD 149
           + GLYG   P TV NF+A+C+             Y+++  H+I P  F + G    +R D
Sbjct: 47  VFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIP-NFMIQGGD-FTRGD 104

Query: 150 SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFL 209
              GE      F   N        F +KHS+ G++S+              P+    +F 
Sbjct: 105 GTGGESIYGKKFNDEN--------FKIKHSKPGLLSMA----------NAGPNTNGSQFF 146

Query: 210 ITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
           ITT       LD ++ VFG V++G+D+V  + SI +
Sbjct: 147 ITT--VVTSWLDGRHTVFGEVIEGMDIVKLLESIGS 180

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
147854667	339	hypothetical protein VITISV_029129 [Viti	0.856	0.772	0.673	2e-96
225466968	295	PREDICTED: peptidyl-prolyl cis-trans iso	0.761	0.789	0.709	1e-94
255565115	296	peptidyl-prolyl cis-trans isomerase, put	0.777	0.804	0.687	3e-92
224091653	268	predicted protein [Populus trichocarpa]	0.787	0.899	0.656	3e-90
449493671	309	PREDICTED: peptidyl-prolyl cis-trans iso	0.771	0.763	0.700	8e-89
356532982	287	PREDICTED: peptidyl-prolyl cis-trans iso	0.754	0.804	0.680	5e-87
449443001	314	PREDICTED: peptidyl-prolyl cis-trans iso	0.771	0.751	0.687	8e-87
356556583	286	PREDICTED: peptidyl-prolyl cis-trans iso	0.761	0.814	0.664	2e-86
297805064	281	peptidyl-prolyl cis-trans isomerase [Ara	0.901	0.982	0.618	8e-83
115475740	327	Os08g0292600 [Oryza sativa Japonica Grou	0.761	0.712	0.617	4e-82

>gi|147854667|emb|CAN80241.1| hypothetical protein VITISV_029129 [Vitis vinifera]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/282 (67%), Positives = 221/282 (78%), Gaps = 20/282 (7%)

Query: 32  ISFPRRTFLFFSSTTSTALSLPSPPA-----PTPDTTITDSIFMDFSLCPTFFRPEGTDP 86
           +SF RR  LF S++T  A S  S  A     P PDTT+TD ++MDFS+CPT FRPE  D 
Sbjct: 71  LSFTRRHLLFLSTSTXPAPSPLSSSAIPQPPPPPDTTVTDRVYMDFSICPTSFRPEADD- 129

Query: 87  TLCSSPVPLGRLIIGLYGHLAPITVSNFKAMC--SSRSLYRNTLVHKIFPGQFFLAGRQG 144
             C   +PLGRL+IGLYGHL P+TVSNFKAMC  SS S Y+NTLV KIFPGQFF+AGRQG
Sbjct: 130 --CRDSLPLGRLVIGLYGHLVPLTVSNFKAMCTGSSGSSYKNTLVQKIFPGQFFVAGRQG 187

Query: 145 LSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
             RRD   GE+ PPLD L  NT+T+   AF L+HS+ GVVSLCLSENDDD ++KL+P YR
Sbjct: 188 --RRDK--GEVRPPLD-LARNTETVDSRAFALRHSKAGVVSLCLSENDDDDEIKLNPDYR 242

Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGD 264
           NVEFLITTGPGPCPQLDN+NIVFG+VL+GLDVV AIASIPTYKP+ERI++ N+LA F+GD
Sbjct: 243 NVEFLITTGPGPCPQLDNRNIVFGSVLEGLDVVTAIASIPTYKPAERIRQLNDLAEFLGD 302

Query: 265 KRADTARAIWNRPLKTVYISDCGELKLKPNATTKPSLSPTLP 306
            RA  ARA WN+PLKTVYISDCGELK+     TKPSLSP+LP
Sbjct: 303 DRAPIARATWNKPLKTVYISDCGELKV-----TKPSLSPSLP 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466968|ref|XP_002267887.1| PREDICTED: peptidyl-prolyl cis-trans isomerase B-like [Vitis vinifera]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 176/248 (70%), Positives = 204/248 (82%), Gaps = 15/248 (6%)

Query: 61  DTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMC-- 118
           DTT+TD ++MDFS+CPT FRPE  D   C   +PLGRL+IGLYGHL P+TVSNFKAMC  
Sbjct: 61  DTTVTDRVYMDFSICPTSFRPEADD---CRDSLPLGRLVIGLYGHLVPLTVSNFKAMCTG 117

Query: 119 SSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKH 178
           SS S Y+NTLV KIFPGQFF+AGRQG  RRD   GE+ PPLD L  NT+T+   AF L+H
Sbjct: 118 SSGSSYKNTLVQKIFPGQFFVAGRQG--RRDK--GEVRPPLD-LARNTETVDSRAFALRH 172

Query: 179 SRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVA 238
           S+ GVVSLCLSENDDD ++KL+P YRNVEFLITTGPGPCPQLDN+NIVFG+VL+GLDVV 
Sbjct: 173 SKAGVVSLCLSENDDDDEIKLNPDYRNVEFLITTGPGPCPQLDNRNIVFGSVLEGLDVVT 232

Query: 239 AIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPNATTK 298
           AIASIPTYKP+ERI++ N+LA F+GD RA  ARA WN+PLKTVYISDCGELK+     TK
Sbjct: 233 AIASIPTYKPAERIRQLNDLAEFLGDDRAPIARATWNKPLKTVYISDCGELKV-----TK 287

Query: 299 PSLSPTLP 306
           PSLSP+LP
Sbjct: 288 PSLSPSLP 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565115|ref|XP_002523550.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] gi|223537257|gb|EEF38889.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 174/253 (68%), Positives = 204/253 (80%), Gaps = 15/253 (5%)

Query: 55  PPAPTPDTTITDSIFMDFSLCPTFFRPE----GTDPTLCSSPVPLGRLIIGLYGHLAPIT 110
           P  P PDTTITD ++MDFSLCP +FRP+     T  +LC+   PLGR+I+GLYG L P+T
Sbjct: 51  PTVPQPDTTITDRVYMDFSLCPNYFRPDRTLSDTVSSLCTESTPLGRVILGLYGRLVPLT 110

Query: 111 VSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR 170
           VSNFK MC+S S Y+NTLVHKIFPGQFFLAGRQG  RRD   GE+  PL+ L  NT+T+ 
Sbjct: 111 VSNFKTMCTSSS-YKNTLVHKIFPGQFFLAGRQG--RRDK--GEVRVPLE-LVRNTETVD 164

Query: 171 PNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTV 230
             AF L HSR G+VSLCLSENDD+ DVKLDP+YRNVEFLITTGPGP PQLD+KNIVFG V
Sbjct: 165 SKAFKLTHSRPGIVSLCLSENDDEDDVKLDPNYRNVEFLITTGPGPSPQLDSKNIVFGVV 224

Query: 231 LQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK 290
           L+GLDVV AIASIPTYKPSERI+++N+LA+F+GD+RA  AR+ WNRPLKTV+ISDCGEL 
Sbjct: 225 LEGLDVVTAIASIPTYKPSERIRQFNDLASFLGDERAQNARSSWNRPLKTVFISDCGELN 284

Query: 291 LKPNATTKPSLSP 303
           +     TKPSLSP
Sbjct: 285 V-----TKPSLSP 292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091653|ref|XP_002309317.1| predicted protein [Populus trichocarpa] gi|222855293|gb|EEE92840.1| predicted protein [Populus trichocarpa]

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 168/256 (65%), Positives = 203/256 (79%), Gaps = 15/256 (5%)

Query: 55  PPAPTPDTTITDSIFMDFSLCPTFFRPE----GTDPTLCSSPVPLGRLIIGLYGHLAPIT 110
           PP PT DTTITD +F+DFS+C  +FRP+     T  TLC+   PLGRL++GLYGHL P+T
Sbjct: 24  PPRPTLDTTITDRVFLDFSICSNYFRPDRTLSDTFSTLCTDSTPLGRLVLGLYGHLVPLT 83

Query: 111 VSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR 170
           VSNFK MC+S S Y+NTLVHKIFPGQFFLAGRQG  RR+   GE+  P D L  N +++ 
Sbjct: 84  VSNFKTMCTSYS-YKNTLVHKIFPGQFFLAGRQG--RREK--GEVKVPQD-LARNIESVD 137

Query: 171 PNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTV 230
             AF L HS  G++SLCLSENDD+ ++KL+P YRNVEFLITTGPGPCPQLD KNIVFG V
Sbjct: 138 SKAFKLTHSGPGILSLCLSENDDEDNIKLNPEYRNVEFLITTGPGPCPQLDYKNIVFGVV 197

Query: 231 LQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK 290
           L+GLDVV +IASIPTYKPS+RI+++N+LA F+GD+RA  AR IWN+PLKTVYISDCGELK
Sbjct: 198 LEGLDVVTSIASIPTYKPSDRIRQFNDLAEFLGDERAQNARTIWNKPLKTVYISDCGELK 257

Query: 291 LKPNATTKPSLSPTLP 306
           +      KPSL+P+LP
Sbjct: 258 V-----AKPSLTPSLP 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493671|ref|XP_004159404.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic-like [Cucumis sativus]

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 178/254 (70%), Positives = 206/254 (81%), Gaps = 18/254 (7%)

Query: 61  DTTITDSIFMDFSLCPTFFRP------EGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNF 114
           DTTITD +F+DFS+CPT F P      +G D  LCS  V LGRL+IGLYGHL P T SNF
Sbjct: 66  DTTITDRVFIDFSICPTNFLPNRESTDDGGDSLLCSDSVLLGRLVIGLYGHLVPTTASNF 125

Query: 115 KAMC--SSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPN 172
           K+MC  S  S Y+ TLVHKIFPGQFFLAGRQG  RRD   GE+ PPL  LP NT++++ +
Sbjct: 126 KSMCTGSCGSSYKGTLVHKIFPGQFFLAGRQG--RRDK--GEVRPPLQ-LPRNTESVKSD 180

Query: 173 AFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQ 232
           +FLL HSRGGV+SLCLSENDDD D+KLDP+Y NVEFLITTGPGPCPQLD+KNIVFGTVL+
Sbjct: 181 SFLLSHSRGGVISLCLSENDDDDDLKLDPNYHNVEFLITTGPGPCPQLDSKNIVFGTVLE 240

Query: 233 GLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK 292
           GLDVVAAI+S PTYKPSERI+++N+LA F+GD+RA  AR IWNRPL+TVYISDCGELK+ 
Sbjct: 241 GLDVVAAISSTPTYKPSERIRQFNDLAKFLGDERAQNARTIWNRPLQTVYISDCGELKV- 299

Query: 293 PNATTKPSLSPTLP 306
                KPSLSPTLP
Sbjct: 300 ----AKPSLSPTLP 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532982|ref|XP_003535048.1| PREDICTED: peptidyl-prolyl cis-trans isomerase B-like [Glycine max]

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 168/247 (68%), Positives = 195/247 (78%), Gaps = 16/247 (6%)

Query: 66  DSIFMDFSLCPTFFRPEGTDPT--LCSSPVPLGRLIIGLYGHLAPITVSNFKAMC----S 119
           D +FMDFSLCP  F P+  D    LCS    LGR+++GLYG+L P+TVSNFK+MC    S
Sbjct: 51  DRVFMDFSLCPNNFLPDRADSLSPLCSDTTLLGRVVLGLYGNLVPLTVSNFKSMCLGLNS 110

Query: 120 SRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHS 179
           + S Y+NTLVHK+FPGQ+FLAGRQG  R D   GE+ PP D LP NTDT+   AF L HS
Sbjct: 111 TSSSYKNTLVHKVFPGQYFLAGRQG--RPDK--GEVRPPHD-LPRNTDTVAAKAFALTHS 165

Query: 180 RGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAA 239
           R GVVSL LSENDDD ++KLDP YRNVEFLITTGPGPCPQLDNKNIVFGTVL+GLDV+ A
Sbjct: 166 RPGVVSLSLSENDDDDEIKLDPGYRNVEFLITTGPGPCPQLDNKNIVFGTVLEGLDVITA 225

Query: 240 IASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPNATTKP 299
           IASIPTY PSERI+++N+LA F GD+RA  AR IWNRPLK+VYISDCGELK+     TKP
Sbjct: 226 IASIPTYLPSERIRQFNDLAQFFGDERAQNARNIWNRPLKSVYISDCGELKV-----TKP 280

Query: 300 SLSPTLP 306
           SL+P+LP
Sbjct: 281 SLTPSLP 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443001|ref|XP_004139269.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic-like [Cucumis sativus]

 Score =  326 bits (836), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 178/259 (68%), Positives = 206/259 (79%), Gaps = 23/259 (8%)

Query: 61  DTTITDSIFMDFSLCPTFFRP------EGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNF 114
           DTTITD +F+DFS+CPT F P      +G D  LCS  V LGRL+IGLYGHL P T SNF
Sbjct: 66  DTTITDRVFIDFSICPTNFLPNRESTDDGGDSLLCSDSVLLGRLVIGLYGHLVPTTASNF 125

Query: 115 KAMC--SSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPN 172
           K+MC  S  S Y+ TLVHKIFPGQFFLAGRQG  RRD   GE+ PPL  LP NT++++ +
Sbjct: 126 KSMCTGSCGSSYKGTLVHKIFPGQFFLAGRQG--RRDK--GEVRPPLQ-LPRNTESVKSD 180

Query: 173 AFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQ 232
           +FLL HSRGGV+SLCLSENDDD D+KLDP+Y NVEFLITTGPGPCPQLD+KNIVFGTVL+
Sbjct: 181 SFLLSHSRGGVISLCLSENDDDDDLKLDPNYHNVEFLITTGPGPCPQLDSKNIVFGTVLE 240

Query: 233 GLDVVA-----AIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCG 287
           GLDVVA     AI+S PTYKPSERI+++N+LA F+GD+RA  AR IWNRPL+TVYISDCG
Sbjct: 241 GLDVVAAIFGPAISSTPTYKPSERIRQFNDLAKFLGDERAQNARTIWNRPLQTVYISDCG 300

Query: 288 ELKLKPNATTKPSLSPTLP 306
           ELK+      KPSLSPTLP
Sbjct: 301 ELKV-----AKPSLSPTLP 314

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556583|ref|XP_003546604.1| PREDICTED: peptidyl-prolyl cis-trans isomerase B-like [Glycine max]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/250 (66%), Positives = 197/250 (78%), Gaps = 17/250 (6%)

Query: 64  ITDSIFMDFSLCPTFFRPEGTDPT--LCSSPVPLGRLIIGLYGHLAPITVSNFKAMC--- 118
           +TD +FMDFSLCP  F P+  D    LCS    LGR+++GLYG+L P+TVSNFK+MC   
Sbjct: 47  VTDRVFMDFSLCPNNFLPDRADALSPLCSDSNLLGRVVLGLYGNLVPLTVSNFKSMCLGG 106

Query: 119 --SSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLL 176
             ++ S Y+NTLVHK+FPGQ+FLAGRQG  R D   GE+ PP D LP NT+T+   AF L
Sbjct: 107 LNATSSSYKNTLVHKVFPGQYFLAGRQG--RPDK--GEVRPPHD-LPRNTETVDAKAFAL 161

Query: 177 KHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDV 236
            HSR GVVSL LSENDDD ++KLDP YRNVEFLITTGPGPCPQLDNKNIVFGTVL+GLDV
Sbjct: 162 THSRPGVVSLSLSENDDDDEIKLDPGYRNVEFLITTGPGPCPQLDNKNIVFGTVLEGLDV 221

Query: 237 VAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPNAT 296
           + AIASIPTY+PSERI+++N+LA F GD+RA  AR IWNRPL +VYISDCGELK+     
Sbjct: 222 ITAIASIPTYQPSERIRQFNDLARFFGDERAQNARNIWNRPLTSVYISDCGELKV----- 276

Query: 297 TKPSLSPTLP 306
           TKPSL+P+LP
Sbjct: 277 TKPSLTPSLP 286

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805064|ref|XP_002870416.1| peptidyl-prolyl cis-trans isomerase [Arabidopsis lyrata subsp. lyrata] gi|297316252|gb|EFH46675.1| peptidyl-prolyl cis-trans isomerase [Arabidopsis lyrata subsp. lyrata]

 Score =  313 bits (801), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 180/291 (61%), Positives = 215/291 (73%), Gaps = 15/291 (5%)

Query: 21  MAATPSSPPPSISFPRRTFLFFSSTTSTALSLPSPPAPTPDTTITDSIFMDFSLCPTFFR 80
           MA++    PP +S   R  L  S+T +T    P P  P+PD TITD +F+DFSLCPT+FR
Sbjct: 1   MASSSILIPPILS---RRNLLLSTTIATVSPPPPPKPPSPDITITDRVFLDFSLCPTYFR 57

Query: 81  --PEGT--DPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSL-YRNTLVHKIFPG 135
             P  T    T CS   PLGR+++GLYG   PITVS+FK MC+S S  Y+NT VHKIFPG
Sbjct: 58  SDPSATLSSTTPCSDSTPLGRVVLGLYGRHVPITVSSFKRMCTSSSTSYKNTPVHKIFPG 117

Query: 136 QFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDP 195
           Q+FLAGRQG  RRD+   E+   L  LP NTD +   AFLL H+R GVVSLCLSENDDD 
Sbjct: 118 QYFLAGRQGGGRRDT--AEVGYSLRDLPGNTDVVNSKAFLLPHARAGVVSLCLSENDDDD 175

Query: 196 DVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKY 255
           D++LDP YRNVEFLITTGPGPCPQLD  NIVFGTVL+GLDVV +I+SIPTYKPSE I+++
Sbjct: 176 DIRLDPDYRNVEFLITTGPGPCPQLDGGNIVFGTVLEGLDVVTSISSIPTYKPSENIKQF 235

Query: 256 NELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPNATTKPSLSPTLP 306
           N+ A F+GD+RA  AR++WNRPLKTV+IS CGELK+     T PSLSPTLP
Sbjct: 236 NDFAEFLGDERAQNARSLWNRPLKTVFISGCGELKV-----TNPSLSPTLP 281

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115475740|ref|NP_001061466.1| Os08g0292600 [Oryza sativa Japonica Group] gi|28564614|dbj|BAC57781.1| unknown protein [Oryza sativa Japonica Group] gi|38175505|dbj|BAD01200.1| unknown protein [Oryza sativa Japonica Group] gi|113623435|dbj|BAF23380.1| Os08g0292600 [Oryza sativa Japonica Group] gi|215697323|dbj|BAG91317.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 152/246 (61%), Positives = 191/246 (77%), Gaps = 13/246 (5%)

Query: 61  DTTITDSIFMDFSLCPTFFRPE---GTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAM 117
           DTTITD IFMDFS+CP++FR +   G +   C    PLGR+I GLYG L P+T +NFKA 
Sbjct: 88  DTTITDRIFMDFSVCPSYFRSDRTLGAELATCPDSEPLGRVIFGLYGRLLPLTTANFKAA 147

Query: 118 CSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLK 177
           C+S + YR TLVHK+  GQFF+AGRQG  RRD   GE+ PP   +  N +T+ P AF LK
Sbjct: 148 CTS-AAYRGTLVHKLLQGQFFVAGRQG-PRRDR--GEVQPPTGLVR-NAETIDPKAFELK 202

Query: 178 HSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVV 237
           H+R G +SLCL +NDDD D+KL+P+Y NVEFL+TTGPGPCP+LD +NIVFGTVL+G++V+
Sbjct: 203 HARPGTLSLCLGQNDDDDDIKLNPNYHNVEFLVTTGPGPCPELDGQNIVFGTVLEGMNVI 262

Query: 238 AAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPNATT 297
            +IA+IPTYKP+ERI+ +N+ A  IGD+RA TARA+W+RPLKTVYISDCGELK+     T
Sbjct: 263 TSIATIPTYKPAERIRFFNDFAQLIGDERAQTARALWDRPLKTVYISDCGELKV-----T 317

Query: 298 KPSLSP 303
           KPSLSP
Sbjct: 318 KPSLSP 323

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
TAIR|locus:2150371	281	AT5G35100 [Arabidopsis thalian	0.751	0.818	0.657	9.7e-80
GENEDB_PFALCIPARUM|PFC0975c	171	PFC0975c "PFCYP19, cyclophilin	0.392	0.701	0.293	8.8e-13
UNIPROTKB|Q76NN7	171	PfCyP19 "Peptidyl-prolyl cis-t	0.392	0.701	0.293	8.8e-13
POMBASE|SPBC1709.04c	173	cyp3 "cyclophilin family pepti	0.441	0.780	0.296	5.5e-11
DICTYBASE|DDB_G0269120	197	cypB "cyclophilin B" [Dictyost	0.467	0.725	0.308	1.8e-10
TAIR|locus:2031546	317	AT1G74070 [Arabidopsis thalian	0.254	0.246	0.358	8.4e-10
CGD|CAL0002277	162	CYP1 [Candida albicans (taxid:	0.186	0.351	0.376	1.2e-09
UNIPROTKB|P22011	162	CYP1 "Peptidyl-prolyl cis-tran	0.186	0.351	0.376	1.2e-09
TAIR|locus:2116880	172	ROC5 "rotamase cyclophilin 5"	0.428	0.761	0.271	1.4e-09
SGD|S000004543	182	CPR3 "Mitochondrial peptidyl-p	0.218	0.368	0.370	2e-09

TAIR|locus:2150371 AT5G35100 [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 159/242 (65%), Positives = 186/242 (76%)

Query:    70 MDFSLCPTFFR--PEGT--DPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSL-Y 124
             +DFSLCPT+FR  P  T    T CS   PLGR+++GLYG   PITVS FK MC+S S  Y
Sbjct:    47 LDFSLCPTYFRSDPSATLSSTTPCSDSTPLGRVVLGLYGRHVPITVSTFKRMCTSSSTSY 106

Query:   125 RNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVV 184
             +NT VHKIFPGQ+FLAGRQG  RRD+   E+   L  LP NTD +   AFLL H+R GVV
Sbjct:   107 KNTPVHKIFPGQYFLAGRQGGGRRDT--AEVGYSLRDLPRNTDVVNSKAFLLPHARAGVV 164

Query:   185 SLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIP 244
             SLCLSENDDD D++LDP YRNVEFLITTGPGP PQLD  NIVFGTVL+GLDVV +I+SIP
Sbjct:   165 SLCLSENDDDDDIRLDPDYRNVEFLITTGPGPSPQLDGGNIVFGTVLEGLDVVTSISSIP 224

Query:   245 TYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPNATTKPSLSPT 304
             TYKPSE I+++N+ A F+GD+RA  AR++WNRPLKTV+IS CGELK+     T PSLSPT
Sbjct:   225 TYKPSENIKQFNDFAEFLGDERAQNARSLWNRPLKTVFISGCGELKV-----TNPSLSPT 279

Query:   305 LP 306
             LP
Sbjct:   280 LP 281

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GENEDB_PFALCIPARUM|PFC0975c PFC0975c "PFCYP19, cyclophilin, peptidyl-prolyl cis-trans isomerase" [Plasmodium falciparum (taxid:5833)]

 Score = 145 (56.1 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
 Identities = 44/150 (29%), Positives = 72/150 (48%)

Query:    96 GRLIIGLYGHLAPITVSNFKAMCSSRSL--------YRNTLVHKIFPGQFFLAGRQGLSR 147
             GR+I  L+  + P T  NF+A+C+   +        Y+N++ H+I P QF   G   ++ 
Sbjct:    19 GRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP-QFMCQGGD-ITN 76

Query:   148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
              +   GE      F   N        F +KH + G++S+              P+  + +
Sbjct:    77 GNGSGGESIYGRSFTDEN--------FNMKHDQPGLLSMA----------NAGPNTNSSQ 118

Query:   208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVV 237
             F IT  P  CP LD K++VFG V++G++VV
Sbjct:   119 FFITLVP--CPWLDGKHVVFGKVIEGMNVV 146

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA

GO:0016018 "cyclosporin A binding" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q76NN7 PfCyP19 "Peptidyl-prolyl cis-trans isomerase" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 145 (56.1 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
 Identities = 44/150 (29%), Positives = 72/150 (48%)

Query:    96 GRLIIGLYGHLAPITVSNFKAMCSSRSL--------YRNTLVHKIFPGQFFLAGRQGLSR 147
             GR+I  L+  + P T  NF+A+C+   +        Y+N++ H+I P QF   G   ++ 
Sbjct:    19 GRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP-QFMCQGGD-ITN 76

Query:   148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
              +   GE      F   N        F +KH + G++S+              P+  + +
Sbjct:    77 GNGSGGESIYGRSFTDEN--------FNMKHDQPGLLSMA----------NAGPNTNSSQ 118

Query:   208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVV 237
             F IT  P  CP LD K++VFG V++G++VV
Sbjct:   119 FFITLVP--CPWLDGKHVVFGKVIEGMNVV 146

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0016018 "cyclosporin A binding" evidence=IDA

POMBASE|SPBC1709.04c cyp3 "cyclophilin family peptidyl-prolyl cis- trans isomerase Cyp3" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 132 (51.5 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
 Identities = 45/152 (29%), Positives = 68/152 (44%)

Query:    95 LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNT--LVHKIFPGQFFLAGRQGLSRRDSKL 152
             LGR+ I L+  + P T  NF+  C+  +L  N   + +K       + G   +   D   
Sbjct:    18 LGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRIIQGFM-IQGGDFVS 76

Query:   153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
             G+          N+ T     F LKH R G++S+  +  D +            +F ITT
Sbjct:    77 GDGTGSATIF--NSRTFPDENFTLKHDRPGLLSMANAGKDSN----------GCQFFITT 124

Query:   213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIP 244
              P  C  LD K++VFG V++G D+V  I S P
Sbjct:   125 VP--CDFLDGKHVVFGEVIEGYDIVKEIESTP 154

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005816 "spindle pole body" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=IEA

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS

DICTYBASE|DDB_G0269120 cypB "cyclophilin B" [Dictyostelium discoideum (taxid:44689)]

 Score = 149 (57.5 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 55/178 (30%), Positives = 83/178 (46%)

Query:    94 PLGRLIIGLYGHLAPITVSNFKAMC--------SSRSL-YRNTLVHKIFPGQFFLAGRQG 144
             P GR++ GLYG   P TV NF+A+C        S + L Y+++  H+I P  F + G   
Sbjct:    42 PAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPN-FMIQGGD- 99

Query:   145 LSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
              +R D   GE      F   N        F +KHS+ G++S+              P+  
Sbjct:   100 FTRGDGTGGESIYGKKFNDEN--------FKIKHSKPGLLSMA----------NAGPNTN 141

Query:   205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYK--PSE--RIQKYNEL 258
               +F ITT       LD ++ VFG V++G+D+V  + SI +    PS+  +I    EL
Sbjct:   142 GSQFFITTVV--TSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKIAKISNSGEL 197

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2031546 AT1G74070 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
 Identities = 29/81 (35%), Positives = 45/81 (55%)

Query:   207 EFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKR 266
             EF+IT    P  +L++  +V G VL+G+ VV  +  + T + +     Y  +A  IGDKR
Sbjct:   233 EFVITAVDSP--ELEDSVLVIGKVLEGMGVVEKMREVKTVRDNTS-SPYFRVAKVIGDKR 289

Query:   267 ADTARAIWNRPLKTVYISDCG 287
             A  A   +NRP   V +++CG
Sbjct:   290 AVVAERGFNRPYSKVVVTNCG 310

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0016556 "mRNA modification" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

CGD|CAL0002277 CYP1 [Candida albicans (taxid:5476)]

 Score = 101 (40.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 26/69 (37%), Positives = 36/69 (52%)

Query:   174 FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQG 233
             F+ +H R G++S+              P+    +F ITT P  CP LD K++VFG V  G
Sbjct:    86 FVKRHDRPGLLSMA----------NAGPNTNGSQFFITTVP--CPWLDGKHVVFGEVTDG 133

Query:   234 LDVVAAIAS 242
             LD+V  I S
Sbjct:   134 LDIVKKIES 142

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IEA

GO:0034967 "Set3 complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030437 "ascospore formation" evidence=IEA

GO:0045836 "positive regulation of meiosis" evidence=IEA

GO:0016575 "histone deacetylation" evidence=IEA

GO:0016018 "cyclosporin A binding" evidence=IEA

UNIPROTKB|P22011 CYP1 "Peptidyl-prolyl cis-trans isomerase" [Candida albicans SC5314 (taxid:237561)]

 Score = 101 (40.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 26/69 (37%), Positives = 36/69 (52%)

Query:   174 FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQG 233
             F+ +H R G++S+              P+    +F ITT P  CP LD K++VFG V  G
Sbjct:    86 FVKRHDRPGLLSMA----------NAGPNTNGSQFFITTVP--CPWLDGKHVVFGEVTDG 133

Query:   234 LDVVAAIAS 242
             LD+V  I S
Sbjct:   134 LDIVKKIES 142

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA

TAIR|locus:2116880 ROC5 "rotamase cyclophilin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 44/162 (27%), Positives = 74/162 (45%)

Query:    91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSS--------RSL-YRNTLVHKIFPGQFFLAG 141
             S  P+GR+ + L+    P T  NF+A+C+         + L ++ ++ H++ PG  F+  
Sbjct:    13 SGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPG--FMCQ 70

Query:   142 RQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDP 201
                 + ++   GE      F   N        F+ KH+  G++S+  S           P
Sbjct:    71 GGDFTAKNGTGGESIYGAKFKDEN--------FIKKHTGAGILSMANS----------GP 112

Query:   202 HYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASI 243
             +    +F I T       LD K++VFG V++GLDVV AI  +
Sbjct:   113 NTNGSQFFICTDK--TSWLDGKHVVFGQVVKGLDVVKAIEKV 152

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0007165 "signal transduction" evidence=ISS

SGD|S000004543 CPR3 "Mitochondrial peptidyl-prolyl cis-trans isomerase (cyclophilin)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 110 (43.8 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
 Identities = 30/81 (37%), Positives = 42/81 (51%)

Query:   174 FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQG 233
             F+ KH + G++S+              P+    +F ITT P  CP LD K++VFG V +G
Sbjct:   106 FVKKHDKAGLLSMA----------NAGPNTNGSQFFITTVP--CPWLDGKHVVFGEVTKG 153

Query:   234 LDVVAAIASIPTY--KPSERI 252
             +D+V AI S  T   KP   I
Sbjct:   154 MDIVKAIESYGTASGKPRAEI 174

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006915 "apoptotic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	LOW CONFIDENCE prediction!
4th Layer	5.2.1.8	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00010183001 RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8;; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) (226 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	306
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	1e-24
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	9e-20
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	1e-16
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	4e-16
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	5e-13
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	2e-09
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	2e-09
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	1e-08
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	3e-08
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	2e-07
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	2e-05
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	5e-05
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	5e-05
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	2e-04
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	0.002

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score = 96.6 bits (241), Expect = 1e-24
 Identities = 54/194 (27%), Positives = 73/194 (37%), Gaps = 58/194 (29%)

Query: 96  GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGEL 155
           GR++I LYG  AP TV NF ++      Y  T  H++ PG  F+   QG           
Sbjct: 7   GRIVIELYGDEAPKTVENFLSLARGGF-YDGTTFHRVIPG--FMI--QG----------- 50

Query: 156 HPPLDFLPPNTDTLRP----NAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
             P       +         N  L  H R G +S+  +           P+    +F IT
Sbjct: 51  GDPTGTGGGGSGPGYKFPDENFPLKYHHRRGTLSMANA----------GPNTNGSQFFIT 100

Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T P   P LD K+ VFG V++G+DVV  I    T +                        
Sbjct: 101 TAP--TPHLDGKHTVFGKVVEGMDVVDKIERGDTDE------------------------ 134

Query: 272 AIWNRPLKTVYISD 285
               RP+K V ISD
Sbjct: 135 --NGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score = 83.5 bits (207), Expect = 9e-20
 Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 38/164 (23%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
           LGR++I L+G  AP TV NF ++C     Y  T+ H++ PG  F+   QG        G 
Sbjct: 8   LGRIVIELFGDEAPKTVENFLSLCKKGF-YDGTIFHRVIPG--FMI--QG--------G- 53

Query: 155 LHPPLDFLPPNTDTLRP----NAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLI 210
                D   P T   R         LKH RG  +S+  S  +              +F I
Sbjct: 54  -----DPTGPGTGGKRSIPDEFVSKLKHKRG-TLSMARSGPNS----------AGSQFFI 97

Query: 211 TTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT--YKPSERI 252
           T G    P LD    VFG V++G+DVV  I  + T   +P + +
Sbjct: 98  TLGD--APHLDGGYTVFGRVVEGMDVVEKIEKVETDGDRPLKDV 139

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 60/203 (29%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL-------YRNTLVHKIFPGQFFLAGRQG-- 144
           P GR+++ L+  + P T  NF+A+C+           Y+ +  H++ P   F+   QG  
Sbjct: 13  PAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPD--FMI--QGGD 68

Query: 145 LSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
            +R +   G+      F   N        F LKH+  G++S+  +           P+  
Sbjct: 69  FTRGNGTGGKSIYGEKFPDEN--------FKLKHTGPGLLSMANA----------GPNTN 110

Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGD 264
             +F ITT     P LD K++VFG V++G+DVV  I ++ +                   
Sbjct: 111 GSQFFITTVK--TPWLDGKHVVFGKVVEGMDVVKKIENVGSGN----------------- 151

Query: 265 KRADTARAIWNRPLKTVYISDCG 287
                      +P K V I+DCG
Sbjct: 152 ----------GKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score = 74.2 bits (183), Expect = 4e-16
 Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 25/164 (15%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
            G + I LY   AP TV+NF  +      Y  T+ H++ PG  F+      +  D   G 
Sbjct: 8   KGDITIELYPDKAPKTVANFLQLVKEGF-YDGTIFHRVIPG--FMIQGGDPTGGDGTGGP 64

Query: 155 LHP-PLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTG 213
             P   +    N D         +H RG  +S+  +          DP+    +F IT  
Sbjct: 65  GPPFKDENFALNGD---------RHKRG-TLSMARAG---------DPNSNGSQFFITVV 105

Query: 214 PGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNE 257
               P LD K  VFG V++G+DVV  I +  T           +
Sbjct: 106 D--NPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPAD 147

Length = 158

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score = 66.0 bits (161), Expect = 5e-13
 Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 57/205 (27%)

Query: 93  VPLGRLIIGLYGHLAPITVSNFKAMC-------SSRSL-YRNTLVHKIFPGQFFLAGRQG 144
            P GR++  L+  + P T  NF+A+C       S ++L Y+ ++ H+I P QF   G   
Sbjct: 27  APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIP-QFMCQGGD- 84

Query: 145 LSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
           ++  +   GE      F   N        F LKH + G++S+  +           P+  
Sbjct: 85  ITNHNGTGGESIYGRKFTDEN--------FKLKHDQPGLLSMANA----------GPNTN 126

Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGD 264
             +F ITT P  CP LD K++VFG V++G++VV A+    T                   
Sbjct: 127 GSQFFITTVP--CPWLDGKHVVFGKVIEGMEVVRAMEKEGTQS----------------- 167

Query: 265 KRADTARAIWNRPLKTVYISDCGEL 289
                       P K V ++DCGEL
Sbjct: 168 ----------GYPKKPVVVTDCGEL 182

Length = 183

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 40/169 (23%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFL-------AGRQGLSR 147
            G L + L+   AP    NF  +C  +  Y  T+ H+     F +        GR G S 
Sbjct: 8   KGDLNLELHCDKAPKACENFIKLCK-KGYYDGTIFHRSIRN-FMIQGGDPTGTGRGGESI 65

Query: 148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
                           P  D  +PN   L H   GV+S+  S           P+    +
Sbjct: 66  WGK-------------PFKDEFKPN---LSHDGRGVLSMANS----------GPNTNGSQ 99

Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIP---TYKPSERIQ 253
           F IT     C  LD K+ VFG V+ GL+ + A+ ++P   T +P E I+
Sbjct: 100 FFITYRS--CKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIK 146

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 23/153 (15%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
            G + I L+   AP TV NF         Y NT+ H++  G F +    G    D   GE
Sbjct: 6   KGDIHIRLFPEEAPKTVENFTTHAR-NGYYNNTIFHRVIKG-FMIQT--GDPTGDGTGGE 61

Query: 155 LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP 214
                +F     D   P+   LKH R   +S+  +           P+    +F ITT  
Sbjct: 62  SIWGKEF----EDEFSPS---LKHDRPYTLSMANA----------GPNTNGSQFFITTVA 104

Query: 215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYK 247
              P LDNK+ VFG V++G+DVV  I ++ T K
Sbjct: 105 --TPWLDNKHTVFGRVVKGMDVVQRIENVKTDK 135

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 44/163 (26%), Positives = 63/163 (38%), Gaps = 30/163 (18%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
           LG + I L+    P    NF A+C+S   Y   + H+   G F +    G      K GE
Sbjct: 9   LGDIKIELFCDDCPKACENFLALCAS-GYYNGCIFHRNIKG-FMVQT--GDPTGTGKGGE 64

Query: 155 --LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
                  +      D  R     LKH   GVVS+  +  + +            +F IT 
Sbjct: 65  SIWGKKFE------DEFRET---LKHDSRGVVSMANNGPNTNGS----------QFFITY 105

Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT---YKPSERI 252
                P LD K  VFG V+ G + +  +  +P    Y+P E I
Sbjct: 106 AK--QPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEI 146

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 42/157 (26%), Positives = 59/157 (37%), Gaps = 30/157 (19%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
           LG +++ LY   APITV NF A       Y NT+ H++  G F + G           G 
Sbjct: 6   LGDIVVELYDDKAPITVENFLAYVRKGF-YDNTIFHRVISG-FVIQG-----------GG 52

Query: 155 LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE---FLIT 211
             P L                L ++RG +         + PD      + N++    L  
Sbjct: 53  FTPDLAQKETLKPIKNEAGNGLSNTRGTIA----MARTNAPDSATSQFFINLKDNASLDY 108

Query: 212 TGP--GPCPQLDNKNIVFGTVLQGLDVVAAIASIPTY 246
                G          VFG V +G+DVV  IA + TY
Sbjct: 109 QNEQWGYT--------VFGEVTEGMDVVDKIAGVETY 137

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 39/168 (23%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFP------GQFFLAGRQGLSRR 148
           +G + + LY + AP T  NF  +   R  Y  T+ H++        G     GR G S  
Sbjct: 6   MGEITLELYWNHAPKTCKNFYELAK-RGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIY 64

Query: 149 DSKL-GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
             K   E+HP L                 KH+  G++S+  +           P+    +
Sbjct: 65  GKKFEDEIHPEL-----------------KHTGAGILSMANA----------GPNTNGSQ 97

Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTY--KPSERIQ 253
           F IT  P   P LD K+ +FG V +G+ V+  +  + T   +P + ++
Sbjct: 98  FFITLAP--TPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVK 143

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 19/148 (12%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAG--RQGLSRRDSKL 152
           LG L+I L+    P+   NF  +C  +  Y   L + +        G      +  +S  
Sbjct: 6   LGDLVIDLFTDECPLACLNFLKLCKLK-YYNFCLFYNVQKDFIAQTGDPTGTGAGGESIY 64

Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
            +L+            + P    LKHS+ G VS+          V    +    +F IT 
Sbjct: 65  SQLYG--RQARFFEPEILPL---LKHSKKGTVSM----------VNAGDNLNGSQFYITL 109

Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAI 240
           G      LD K+ VFG V++G DV+  I
Sbjct: 110 GEN-LDYLDGKHTVFGQVVEGFDVLEKI 136

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 53/168 (31%)

Query: 96  GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAG---RQGLSRRDSKL 152
           G ++I  +   AP TV NF   C     Y NT+ H++  G F + G     G+ ++ +K 
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCRE-GFYNNTIFHRVING-FMIQGGGFEPGMKQKATK- 65

Query: 153 GELHPPLDFLPPNTDTLRPNAFL-LKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
                         + ++  A   LK++RG   +L ++           PH    +F I 
Sbjct: 66  --------------EPIKNEANNGLKNTRG---TLAMARTQ-------APHSATAQFFIN 101

Query: 212 T--------------GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
                          G G C        VF  V++G+DVV  I  + T
Sbjct: 102 VVDNDFLNFSGESLQGWGYC--------VFAEVVEGMDVVDKIKGVAT 141

Length = 164

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 21/152 (13%)

Query: 96  GRLIIGLYGHLAPITVSNFKAMCS-SRSLYRNTLVHKIFPG-QFFLAGRQGLSRRDSKLG 153
           GRL+  L+  + P TV NF+A+ + S  +  NT V   +         R         LG
Sbjct: 67  GRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRN---NNIIVLG 123

Query: 154 ELHPPLDFLPPNTDT-LRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
           EL     F   +T T +    +  +H+  G++++          +   PH     F IT 
Sbjct: 124 EL---DSFNVSSTGTPIADEGYRHRHTERGLLTM----------ISEGPHTSGSVFGITL 170

Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIP 244
           GP P   LD K +VFG  +  L ++  + S+P
Sbjct: 171 GPSP--SLDFKQVVFGKAVDDLSLLEKLESLP 200

Length = 249

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 54/214 (25%), Positives = 83/214 (38%), Gaps = 74/214 (34%)

Query: 93  VPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
           +P GR+ + L+  +AP T  NF+  C+               G+F    R+    +  K 
Sbjct: 30  IPAGRIKMELFADIAPKTAENFRQFCT---------------GEF----RKAGLPQGYKG 70

Query: 153 GELHPPL-DFLPPNTDTLRPN---------------AFLLKHSRGGVVSLCLSENDDDPD 196
            + H  + DF+    D L+ +                F+ KH+  G++S+  S       
Sbjct: 71  CQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANS------- 123

Query: 197 VKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVL-QGLDVVAAIASIPTYKPSERIQKY 255
               P+    +F IT     C  LDNK++VFG VL  GL VV  I ++ T  P+      
Sbjct: 124 ---GPNTNGCQFFITCAK--CDWLDNKHVVFGRVLGDGLLVVRKIENVAT-GPN------ 171

Query: 256 NELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289
                              NRP     IS+CGE+
Sbjct: 172 -------------------NRPKLACVISECGEM 186

Length = 186

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 41/145 (28%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFL--------AGRQGLS 146
            G + I L+   AP    NF  +C     Y NT+ H++ PG  F+         G  G S
Sbjct: 14  AGDIDIELWSKEAPKACRNFIQLCLE-GYYDNTIFHRVVPG--FIIQGGDPTGTGTGGES 70

Query: 147 RRDSKLG-ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
                   E H  L F                 +R G+V +  + +D +           
Sbjct: 71  IYGEPFKDEFHSRLRF-----------------NRRGLVGMANAGDDSN----------G 103

Query: 206 VEFLITTGPGPCPQLDNKNIVFGTV 230
            +F  T       +L+NK+ +FG V
Sbjct: 104 SQFFFTL--DKADELNNKHTLFGKV 126

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.42
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	95.47
PRK00969	508	hypothetical protein; Provisional	95.36
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	95.0
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	94.69
PRK00969	508	hypothetical protein; Provisional	91.86
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	91.76
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	86.27

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-55  Score=378.38  Aligned_cols=172  Identities=34%  Similarity=0.643  Sum_probs=162.5

Q ss_pred             CCCCCCCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc---CccccCceeEeec
Q 021845           57 APTPDTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS---RSLYRNTLVHKIF  133 (306)
Q Consensus        57 ~~~~~~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~---~~~Y~gt~FhRVi  133 (306)
                      ...+.+++|++|||||++                ++...|||+|+||++.+|+||+||++||++   +..|.|++||||+
T Consensus        31 ~~~~~p~vT~kV~fdi~~----------------g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi   94 (217)
T KOG0880|consen   31 KYEPGPKVTHKVYFDIEI----------------GGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVI   94 (217)
T ss_pred             ccCCCCcceeEEEEEEEE----------------CCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeee
Confidence            346778999999999999                789999999999999999999999999993   5789999999999


Q ss_pred             CCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcC
Q 021845          134 PGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTG  213 (306)
Q Consensus       134 ~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~  213 (306)
                      |||||||||.  +.++|++|.++|        |++|+||||.|+|++||.|||||.          |||+||||||||+.
T Consensus        95 ~nfmIQGGd~--t~g~gtGg~SIy--------G~~F~DENf~LkH~rpG~lSMAn~----------GpDtNGsQFfItT~  154 (217)
T KOG0880|consen   95 PNFMIQGGDF--TKGDGTGGKSIY--------GEKFPDENFKLKHDRPGRLSMANA----------GPDTNGSQFFITTV  154 (217)
T ss_pred             cCceeecCcc--ccCCCCCCeEee--------cCCCCCccceeecCCCceEeeecc----------CCCCCCceEEEEec
Confidence            9999999996  789999999998        688999999999999999999998          89999999999999


Q ss_pred             CCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          214 PGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       214 ~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                      .  ++||||+|+|||+|++|||||.+|+.++||.                          .++|+++|+|.+||+|+.+
T Consensus       155 ~--t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~--------------------------~dkP~e~v~I~~~g~l~~~  205 (217)
T KOG0880|consen  155 K--TPWLDGKHVVFGQVLEGMDVVRKIENVKTDE--------------------------RDKPLEDVVIANCGELPVE  205 (217)
T ss_pred             C--CccccCceeEEeeehhhHHHHHHHHhcccCC--------------------------CCCccccEEEeecCccccc
Confidence            8  9999999999999999999999999999985                          6999999999999999884

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.5e-55  Score=409.59  Aligned_cols=165  Identities=33%  Similarity=0.593  Sum_probs=156.8

Q ss_pred             CCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc----------CccccCceeEeec
Q 021845           64 ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS----------RSLYRNTLVHKIF  133 (306)
Q Consensus        64 ~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~----------~~~Y~gt~FhRVi  133 (306)
                      .+++|||||+|                ++.+.||||||||.|.||+||+||+.||++          ...|+|+.|||||
T Consensus         7 ~~pr~ffDISI----------------~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRVi   70 (372)
T KOG0546|consen    7 TNPRVFFDISI----------------GGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVI   70 (372)
T ss_pred             CCceEEEEEEe----------------CCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheee
Confidence            37899999999                899999999999999999999999999996          2489999999999


Q ss_pred             CCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcC
Q 021845          134 PGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTG  213 (306)
Q Consensus       134 ~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~  213 (306)
                      ++|||||||.  +.++|+||+|||        |..|+||+|.++|+++++|||||.          ||||||||||||+.
T Consensus        71 K~FMiQgGDf--s~gnGtGGeSIY--------G~~FdDEnF~lKHdrpflLSMAN~----------GpNTNgSQFFITT~  130 (372)
T KOG0546|consen   71 KNFMIQGGDF--SEGNGTGGESIY--------GEKFDDENFELKHDRPFLLSMANR----------GPNTNGSQFFITTV  130 (372)
T ss_pred             ecceeecccc--ccCCCCCccccc--------ccccccccceeccCcchhhhhhcC----------CCCCCCcceEEeCC
Confidence            9999999996  799999999998        678999999999999999999998          89999999999999


Q ss_pred             CCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          214 PGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       214 ~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                      +  +|||||+|+|||+||+|++||+.|+.+.|+.                          .++|..+|+|.+||+|..+
T Consensus       131 p--~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~--------------------------~skP~~dV~I~dCGel~~~  181 (372)
T KOG0546|consen  131 P--TPHLDGKHVVFGQVIKGKEVVREIENLETDE--------------------------ESKPLADVVISDCGELVKK  181 (372)
T ss_pred             C--CCCcCCceeEEeeEeechhHHHHHhcccccc--------------------------CCCCccceEeccccccccc
Confidence            8  9999999999999999999999999999985                          4699999999999999986

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.7e-49  Score=322.54  Aligned_cols=163  Identities=30%  Similarity=0.532  Sum_probs=153.1

Q ss_pred             CCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc-------CccccCceeEeecCC
Q 021845           63 TITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS-------RSLYRNTLVHKIFPG  135 (306)
Q Consensus        63 ~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~-------~~~Y~gt~FhRVi~~  135 (306)
                      +.++.||||+++                ++..+|||+||||.+.+|+|++||+++|++       +..|++++|||||++
T Consensus         8 ~~nPvVF~dv~i----------------gg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkd   71 (177)
T KOG0879|consen    8 PNNPVVFFDVAI----------------GGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKD   71 (177)
T ss_pred             CCCCeEEEEEee----------------CCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhh
Confidence            348899999999                899999999999999999999999999997       467999999999999


Q ss_pred             eEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCC
Q 021845          136 QFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG  215 (306)
Q Consensus       136 f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~  215 (306)
                      |||||||.  -.++|++-.+||        +.+|+||+|.++|+.||+|||||+          ++++||+|||||..+ 
T Consensus        72 FMiQgGDF--v~gDGtG~~sIy--------~~~F~DENFtlkH~~PGlLSMANs----------G~~tNGCQFFITcak-  130 (177)
T KOG0879|consen   72 FMIQGGDF--VNGDGTGVASIY--------GSTFPDENFTLKHDGPGLLSMANS----------GKDTNGCQFFITCAK-  130 (177)
T ss_pred             heeccCce--ecCCCceEEEEc--------CCCCCCcceeeecCCCceeecccc----------CCCCCCceEEEEecc-
Confidence            99999995  688998888887        568999999999999999999998          899999999999998 


Q ss_pred             CCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          216 PCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       216 ~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                       +.|||++|+|||||++||.+++||+.+++..                          +++|+-+|.|+.||++
T Consensus       131 -cdfLD~KHVVFGrvldGlli~rkIEnvp~G~--------------------------NnkPKl~v~i~qCGem  177 (177)
T KOG0879|consen  131 -CDFLDGKHVVFGRVLDGLLIMRKIENVPTGP--------------------------NNKPKLPVVIVQCGEM  177 (177)
T ss_pred             -cccccCceEEEeeeehhhhhhhhhhcCCCCC--------------------------CCCCCCcEEEeecccC
Confidence             9999999999999999999999999999974                          6999999999999974

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=2.3e-45  Score=335.41  Aligned_cols=163  Identities=28%  Similarity=0.486  Sum_probs=145.3

Q ss_pred             CCCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccC----------ccccCceeE
Q 021845           61 DTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSR----------SLYRNTLVH  130 (306)
Q Consensus        61 ~~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~----------~~Y~gt~Fh  130 (306)
                      ....+++||||+++                ++...|||+||||.+.||+||+||++||++.          .+|+|+.||
T Consensus        48 ~~~~~~rVfldisi----------------g~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~Fh  111 (249)
T PTZ00221         48 EEQNSCRAFLDISI----------------GDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVH  111 (249)
T ss_pred             cCCCCCEEEEEEee----------------CCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEE
Confidence            44678999999999                7889999999999999999999999999851          249999999


Q ss_pred             eecCC-eEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEE
Q 021845          131 KIFPG-QFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFL  209 (306)
Q Consensus       131 RVi~~-f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFf  209 (306)
                      ||+++ |+||+||+.   .   .|.+++        |..|.||++.++|+++|+|+|++.          ++|++|||||
T Consensus       112 RVi~~~f~iqgGD~~---~---~g~s~~--------G~~f~dE~~~~~h~~~G~LsMan~----------GpntngSQFf  167 (249)
T PTZ00221        112 HVDRNNNIIVLGELD---S---FNVSST--------GTPIADEGYRHRHTERGLLTMISE----------GPHTSGSVFG  167 (249)
T ss_pred             EEeCCCCEEEeCCCC---C---CCccCC--------CCcccCccccccCCCCCEEEeCcC----------CCCCccceEE
Confidence            99985 899999972   1   223333        567899999999999999999997          7999999999


Q ss_pred             EEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          210 ITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       210 Itl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      ||+.+  +++||++|+|||||++|||||++|++++++.                          .++|.++|+|.+||+|
T Consensus       168 ITl~~--~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~--------------------------~grP~~~V~I~~Cgvl  219 (249)
T PTZ00221        168 ITLGP--SPSLDFKQVVFGKAVDDLSLLEKLESLPLDD--------------------------VGRPLLPVTVSFCGAL  219 (249)
T ss_pred             EECCC--CCccCCCceEEEEEEeCHHHHHHHHcCCcCC--------------------------CCCCCCCeEEEECeEe
Confidence            99998  9999999999999999999999999998864                          5899999999999999


Q ss_pred             cc
Q 021845          290 KL  291 (306)
Q Consensus       290 ~~  291 (306)
                      +.
T Consensus       220 ~~  221 (249)
T PTZ00221        220 TG  221 (249)
T ss_pred             cC
Confidence            98

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=6.3e-45  Score=321.35  Aligned_cols=160  Identities=31%  Similarity=0.582  Sum_probs=144.4

Q ss_pred             CceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCcc--------ccCceeEeecCCe
Q 021845           65 TDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSL--------YRNTLVHKIFPGQ  136 (306)
Q Consensus        65 ~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~--------Y~gt~FhRVi~~f  136 (306)
                      ++++||||++                ++++.|||+||||.+.||+||+||++||++ .+        |+++.||||+++|
T Consensus        18 ~~~v~~di~~----------------~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g-~~~~~g~~~~Y~~~~fhrVi~~f   80 (186)
T PLN03149         18 NPVVFFDVTI----------------GGIPAGRIKMELFADIAPKTAENFRQFCTG-EFRKAGLPQGYKGCQFHRVIKDF   80 (186)
T ss_pred             CCEEEEEEee----------------CCcccccEEEEEcCCCCcHHHHHHHHHHhh-hccccCcccccCCcEEEEEcCCc
Confidence            5789999998                778999999999999999999999999986 33        9999999999999


Q ss_pred             EEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCC
Q 021845          137 FFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGP  216 (306)
Q Consensus       137 ~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~  216 (306)
                      +||+||+  ..+++.++.+++        +..|++|.+.++|+++|+|+|++.          ++++++||||||+.+  
T Consensus        81 ~iqgGd~--~~~~g~g~~~~~--------g~~f~~e~~~~~h~~~G~lsma~~----------g~~s~~sqFfIt~~~--  138 (186)
T PLN03149         81 MIQGGDF--LKGDGTGCVSIY--------GSKFEDENFIAKHTGPGLLSMANS----------GPNTNGCQFFITCAK--  138 (186)
T ss_pred             EEEcCCc--ccCCCCCccccc--------CCccCCcccccccCCCCEEEEeeC----------CCCCcccEEEEECCC--
Confidence            9999997  345666776665        456788888899999999999997          799999999999997  


Q ss_pred             CCCCCCCCcEEEEEE-cCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          217 CPQLDNKNIVFGTVL-QGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       217 ~p~LDg~~tVFGrVv-~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      .++||++|+|||||+ +|||||++|++++++.                          .++|.++|+|.+||++
T Consensus       139 ~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~--------------------------~~~P~~~i~I~~cG~~  186 (186)
T PLN03149        139 CDWLDNKHVVFGRVLGDGLLVVRKIENVATGP--------------------------NNRPKLACVISECGEM  186 (186)
T ss_pred             CCccCCCceEEEEEEECcHHHHHHHHcCCCCC--------------------------CCCCcCCeEEEeCEeC
Confidence            999999999999999 7999999999999864                          5899999999999985

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=1.3e-44  Score=318.74  Aligned_cols=162  Identities=33%  Similarity=0.645  Sum_probs=144.9

Q ss_pred             CCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc--------CccccCceeEeecCC
Q 021845           64 ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS--------RSLYRNTLVHKIFPG  135 (306)
Q Consensus        64 ~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~--------~~~Y~gt~FhRVi~~  135 (306)
                      .+++||||+++                ++++.|+|+||||.+.||+||+||++||++        .++|+|+.||||+|+
T Consensus        14 ~~~~v~~di~i----------------~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~   77 (183)
T PTZ00060         14 KRPKVFFDISI----------------DNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQ   77 (183)
T ss_pred             CCCEEEEEEEE----------------CCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCC
Confidence            47899999999                789999999999999999999999999973        269999999999999


Q ss_pred             eEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCC
Q 021845          136 QFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG  215 (306)
Q Consensus       136 f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~  215 (306)
                      |+||+||+  ..+++.+|.+++        +..+++|.+.++|+++|+|+|++.          ++++++||||||+++ 
T Consensus        78 ~~iqgGd~--~~~~g~~g~~~~--------g~~~~~e~~~~~h~~~G~lsma~~----------g~~~~~sqFfIt~~~-  136 (183)
T PTZ00060         78 FMCQGGDI--TNHNGTGGESIY--------GRKFTDENFKLKHDQPGLLSMANA----------GPNTNGSQFFITTVP-  136 (183)
T ss_pred             CeEEeCCc--cCCCCCCCCccc--------ccccCCccccccCCCCCEEEeccC----------CCCCCcceEEEEeCC-
Confidence            99999997  345566666665        455778888899999999999987          789999999999998 


Q ss_pred             CCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          216 PCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       216 ~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                       .++||++|+|||||++|||||++|+++++.                           +++|.++|+|++||+|.
T Consensus       137 -~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~---------------------------~~~P~~~v~I~~cg~~~  183 (183)
T PTZ00060        137 -CPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ---------------------------SGYPKKPVVVTDCGELQ  183 (183)
T ss_pred             -CcccCCCccEEEEEEccHHHHHHHHccCCC---------------------------CCCCcCCeEEEEeEEcC
Confidence             999999999999999999999999998774                           48999999999999973

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=2.5e-44  Score=311.58  Aligned_cols=157  Identities=31%  Similarity=0.629  Sum_probs=141.4

Q ss_pred             ceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc-Cc------cccCceeEeecCCeEE
Q 021845           66 DSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS-RS------LYRNTLVHKIFPGQFF  138 (306)
Q Consensus        66 ~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~-~~------~Y~gt~FhRVi~~f~i  138 (306)
                      |+|||||++                ++++.|+|+||||.+.||+||+||++||++ .+      +|+++.||||+++|+|
T Consensus         1 p~v~~di~i----------------~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~i   64 (164)
T cd01926           1 PKVFFDITI----------------GGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMI   64 (164)
T ss_pred             CEEEEEEeE----------------CCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEE
Confidence            579999998                789999999999999999999999999984 13      8999999999999999


Q ss_pred             EcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCC
Q 021845          139 LAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCP  218 (306)
Q Consensus       139 q~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p  218 (306)
                      |+||+  ..+++.++.+++        +..|++|.+.++|+++|+|+||+.          ++++++|||||++++  .+
T Consensus        65 q~Gd~--~~~~g~~~~~~~--------g~~~~~e~~~~~h~~~G~lsma~~----------~~~~~~sqFfIt~~~--~~  122 (164)
T cd01926          65 QGGDF--TRGNGTGGKSIY--------GEKFPDENFKLKHTGPGLLSMANA----------GPNTNGSQFFITTVK--TP  122 (164)
T ss_pred             EcCCc--cCCCCCCCCccc--------CCccCCCCccccCCCccEEEeeEC----------CCCCcccEEEEEeCC--CC
Confidence            99997  345566666665        455778888899999999999997          789999999999997  99


Q ss_pred             CCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeee
Q 021845          219 QLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCG  287 (306)
Q Consensus       219 ~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg  287 (306)
                      +||++|+|||||++|||||++|++++++                           +++|+++|+|.+||
T Consensus       123 ~Ld~~~tvFG~V~~G~dvl~~i~~~~~~---------------------------~~~P~~~i~I~~cG  164 (164)
T cd01926         123 WLDGKHVVFGKVVEGMDVVKKIENVGSG---------------------------NGKPKKKVVIADCG  164 (164)
T ss_pred             ccCCcccEEEEEEEcHHHHHHHHcCCCC---------------------------CCCCcCCeEEEECC
Confidence            9999999999999999999999999886                           38999999999998

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-44  Score=308.46  Aligned_cols=153  Identities=29%  Similarity=0.462  Sum_probs=132.7

Q ss_pred             CCCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCC
Q 021845           90 SSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTL  169 (306)
Q Consensus        90 ~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~  169 (306)
                      +..|+.|+|+||||++.||+||+||++||+. +||+|+.||||+++|||||||+  ..+++.+|.           ++.|
T Consensus         3 ~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~-g~Ydg~~FHRVi~~FmiQgGd~--~~~~g~gg~-----------~~~f   68 (158)
T COG0652           3 ILETNKGDITIELYPDKAPKTVANFLQLVKE-GFYDGTIFHRVIPGFMIQGGDP--TGGDGTGGP-----------GPPF   68 (158)
T ss_pred             eeeccCCCEEEEECCCcCcHHHHHHHHHHHc-CCCCCceEEEeecCceeecCCC--CCCCCCCCC-----------CCCC
Confidence            3689999999999999999999999999999 9999999999999999999998  344466665           3668


Q ss_pred             CCCcccccCCC--ceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCC
Q 021845          170 RPNAFLLKHSR--GGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYK  247 (306)
Q Consensus       170 ~de~~~l~h~~--~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~  247 (306)
                      ++|.+...|++  +|+|||||.+         .||||+||||||+.+  .+|||++|+|||+|++|||||++|++..+..
T Consensus        69 ~~E~~~~~~~~~~~G~lsMA~~g---------~P~t~~SQFFI~~~~--~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~  137 (158)
T COG0652          69 KDENFALNGDRHKRGTLSMARAG---------DPNSNGSQFFITVVD--NPFLDGKYTVFGQVVEGMDVVDKIKNGDTDD  137 (158)
T ss_pred             cccccccccccCCcceEeEcccC---------CcCCccCeEEEEecC--CcccCCCCcEEEEEehhHHHHHHHHcCCccC
Confidence            89988888877  9999999983         499999999999998  9999999999999999999999999987764


Q ss_pred             CchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          248 PSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       248 ~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      ..                     . ..+.|..+|+|.+..++
T Consensus       138 ~~---------------------~-~~~~~~~~~~i~~~~~~  157 (158)
T COG0652         138 SG---------------------Y-VQDVPADPVKILSVKIV  157 (158)
T ss_pred             CC---------------------c-ccCCCCCCeEEeeeeee
Confidence            10                     0 13677788888887664

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-45  Score=322.94  Aligned_cols=164  Identities=25%  Similarity=0.481  Sum_probs=154.5

Q ss_pred             CCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc--CccccCceeEeecCCeEEE
Q 021845           62 TTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS--RSLYRNTLVHKIFPGQFFL  139 (306)
Q Consensus        62 ~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~--~~~Y~gt~FhRVi~~f~iq  139 (306)
                      ..-+++||+|+.|                ++...|||+++|..+..|+|++||+.||++  +..|+|+.||||||.||+|
T Consensus       133 a~~~pqv~~~iki----------------g~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcq  196 (298)
T KOG0111|consen  133 AMENPQVYHDIKI----------------GEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQ  196 (298)
T ss_pred             hhhChHhhhheee----------------cccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhcc
Confidence            3568999999999                788999999999999999999999999995  5789999999999999999


Q ss_pred             cCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCC
Q 021845          140 AGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQ  219 (306)
Q Consensus       140 ~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~  219 (306)
                      |||  |+.++|++|.+||        |.+|.||+|.|+|..+|+|||||.          |+|+||||||||+..  +.|
T Consensus       197 ggd--ftn~ngtggksiy--------gkkfddenf~lkht~pgtlsmans----------gantngsqffict~k--tdw  254 (298)
T KOG0111|consen  197 GGD--FTNGNGTGGKSIY--------GKKFDDENFTLKHTMPGTLSMANS----------GANTNGSQFFICTEK--TDW  254 (298)
T ss_pred             CCc--cccCCCCCCcccc--------cccccccceeeecCCCceeecccc----------CCCCCCceEEEEecc--ccc
Confidence            999  4899999999998        688999999999999999999998          899999999999998  999


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          220 LDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       220 LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                      ||++|+|||+|++||+||++|++..+.                           .++|.+.|+|.+||+|+
T Consensus       255 ldgkhvvfghv~eg~~vvrq~e~qgsk---------------------------sgkp~qkv~i~~cge~~  298 (298)
T KOG0111|consen  255 LDGKHVVFGHVVEGMNVVRQVEQQGSK---------------------------SGKPQQKVKIVECGEIE  298 (298)
T ss_pred             ccCceeEEeeecchHHHHHHHHhccCC---------------------------CCCcceEEEEEeccccC
Confidence            999999999999999999999999765                           49999999999999974

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=1.1e-43  Score=306.26  Aligned_cols=152  Identities=26%  Similarity=0.409  Sum_probs=137.0

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      ..|+.|+|+||||.+.||+||+||++||+. ++|+|+.||||+++|+||+||+   .+++.+|.+++        +..++
T Consensus         4 ~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-g~Y~~~~f~rv~~~~~iq~Gd~---~~~g~~~~~~~--------g~~~~   71 (159)
T cd01923           4 LHTNKGDLNLELHCDKAPKACENFIKLCKK-GYYDGTIFHRSIRNFMIQGGDP---TGTGRGGESIW--------GKPFK   71 (159)
T ss_pred             EEEccccEEEEEeCCCChHHHHHHHHHHhc-CccCCcEEEEEeCCcEEEeccc---CCCCCCCcccc--------CCccC
Confidence            468899999999999999999999999999 9999999999999999999997   45666777665        34566


Q ss_pred             CCc-ccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845          171 PNA-FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS  249 (306)
Q Consensus       171 de~-~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~  249 (306)
                      +|. ..++|+++|+|+|++.          ++++++||||||+++  .++||++|+|||||++|||||++|+++++++  
T Consensus        72 ~E~~~~~~h~~~G~v~ma~~----------~~~s~~sqFfIt~~~--~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~--  137 (159)
T cd01923          72 DEFKPNLSHDGRGVLSMANS----------GPNTNGSQFFITYRS--CKHLDGKHTVFGRVVGGLETLEAMENVPDPG--  137 (159)
T ss_pred             cccccCcCcCCCcEEEEeeC----------CCCCcccEEEEECCC--CcccCCCccEEEEEEcCHHHHHHHHcCCCCC--
Confidence            664 3578999999999997          789999999999997  9999999999999999999999999998864  


Q ss_pred             hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                                              +++|+++|+|.+|+++.++
T Consensus       138 ------------------------~~~P~~~i~I~~~~i~~dp  156 (159)
T cd01923         138 ------------------------TDRPKEEIKIEDTSVFVDP  156 (159)
T ss_pred             ------------------------CCCCCCCeEEEEeEEEeCC
Confidence                                    5899999999999999984

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-44  Score=294.62  Aligned_cols=148  Identities=25%  Similarity=0.445  Sum_probs=138.0

Q ss_pred             CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845           92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP  171 (306)
Q Consensus        92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d  171 (306)
                      +|++|.|++|||-+.||+||+||.+|++. +||+|+.||||+++|||||||+   .++|.+|.++|        |.+|+|
T Consensus        15 eTsmG~i~~ElY~kHaP~TC~NF~eLarr-gYYn~v~FHRii~DFmiQGGDP---TGTGRGGaSIY--------G~kF~D   82 (164)
T KOG0881|consen   15 ETSMGKITLELYWKHAPRTCQNFAELARR-GYYNGVIFHRIIKDFMIQGGDP---TGTGRGGASIY--------GDKFED   82 (164)
T ss_pred             eecccceehhhhhhcCcHHHHHHHHHHhc-ccccceeeeehhhhheeecCCC---CCCCCCccccc--------cchhhh
Confidence            55669999999999999999999999999 9999999999999999999998   88999999998        567888


Q ss_pred             Ccc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCch
Q 021845          172 NAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSE  250 (306)
Q Consensus       172 e~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~  250 (306)
                      |-. .|+|..+|+|||||.          +||+|||||||||.+  .+||||+|++||||+.||+|+.+|-.+.|+.   
T Consensus        83 Ei~~dLkhTGAGILsMANa----------GPnTNgSQFFiTLAP--t~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~---  147 (164)
T KOG0881|consen   83 EIHSDLKHTGAGILSMANA----------GPNTNGSQFFITLAP--TQWLDGKHTIFGRVCSGMEVIKRMGMVETDN---  147 (164)
T ss_pred             hhhhhhcccchhhhhhhcc----------CCCCCCceEEEEecC--ccccCCcceeehhhhhhHHHHHhhcceecCC---
Confidence            854 699999999999998          899999999999998  9999999999999999999999999999985   


Q ss_pred             hhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          251 RIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       251 ~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                                             .+||..+|+|.+.-++
T Consensus       148 -----------------------~DRPi~~~kIika~~~  163 (164)
T KOG0881|consen  148 -----------------------SDRPIDEVKIIKAYPS  163 (164)
T ss_pred             -----------------------CCCCccceeeEeeecC
Confidence                                   6999999999887543

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=2.5e-43  Score=306.00  Aligned_cols=160  Identities=28%  Similarity=0.392  Sum_probs=137.6

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      .+|+.|+|+||||.+.||+||+||++||++ ++|+|+.||||+++|+||+||+   .+++.+|.+++.... ...+..+.
T Consensus         2 l~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~-~~Y~g~~fhrvi~~f~iQgGd~---~~~g~~~~~~~~~~~-~~~~~~~~   76 (166)
T cd01921           2 LETTLGDLVIDLFTDECPLACLNFLKLCKL-KYYNFCLFYNVQKDFIAQTGDP---TGTGAGGESIYSQLY-GRQARFFE   76 (166)
T ss_pred             cEeccCCEEEEEcCCCCCHHHHHHHHHHhc-CCcCCCEEEEEeCCceEEECCc---CCCCCCCcccccccc-cccCcccC
Confidence            368899999999999999999999999999 9999999999999999999997   455666666653211 11124566


Q ss_pred             CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845          171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS  249 (306)
Q Consensus       171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~  249 (306)
                      +|.. .++|+++|+|+||+.          ++++++||||||+.+ ..++||++|+|||||++|||||++|+++++++  
T Consensus        77 ~e~~~~~~h~~~G~l~ma~~----------~~~~~~SQFfIt~~~-~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~--  143 (166)
T cd01921          77 PEILPLLKHSKKGTVSMVNA----------GDNLNGSQFYITLGE-NLDYLDGKHTVFGQVVEGFDVLEKINDAIVDD--  143 (166)
T ss_pred             cccCCccccCCceEEEEeEC----------CCCCccceEEEEcCC-CCcccCCCccEEEEEEcCHHHHHHHHcCCCCC--
Confidence            6653 688999999999998          688899999999974 37999999999999999999999999998874  


Q ss_pred             hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                                              .++|+++|+|.+|++|.++
T Consensus       144 ------------------------~~~P~~~i~I~~~~i~~~p  162 (166)
T cd01921         144 ------------------------DGRPLKDIRIKHTHILDDP  162 (166)
T ss_pred             ------------------------CCCCCCCeEEEEEEEECCC
Confidence                                    5899999999999999984

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=7.3e-43  Score=297.78  Aligned_cols=145  Identities=32%  Similarity=0.474  Sum_probs=131.0

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      ..|++|+|+||||.+.||+||+||++||++ ++|+|+.||||++||++|+||+   .+++.++.+++        +..|+
T Consensus         2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-g~Y~~~~f~Rvi~~f~iq~Gd~---~~~g~g~~~~~--------~~~~~   69 (148)
T cd01927           2 IHTTKGDIHIRLFPEEAPKTVENFTTHARN-GYYNNTIFHRVIKGFMIQTGDP---TGDGTGGESIW--------GKEFE   69 (148)
T ss_pred             eEeccccEEEEEeCCCCcHHHHHHHHHhhc-CCcCCcEEEEEcCCcEEEeccc---CCCCCCCCccc--------CCccc
Confidence            368899999999999999999999999999 9999999999999999999997   45666776665        34577


Q ss_pred             CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845          171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS  249 (306)
Q Consensus       171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~  249 (306)
                      +|.. .++|+++|+|+||+.          ++++++|||||++++  .++||++|+|||||++|||||++|+++++++  
T Consensus        70 ~e~~~~~~h~~~G~l~ma~~----------~~~s~~SqFfIt~~~--~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~--  135 (148)
T cd01927          70 DEFSPSLKHDRPYTLSMANA----------GPNTNGSQFFITTVA--TPWLDNKHTVFGRVVKGMDVVQRIENVKTDK--  135 (148)
T ss_pred             cccccccCcCCCeEEEEeeC----------CCCCCCceEEEEcCC--CcccCCCceEEEEEEcCHHHHHHHHcCCCCC--
Confidence            7765 688999999999987          799999999999998  9999999999999999999999999999874  


Q ss_pred             hhhhhhhhhHhhhcccccccccccCCCCCCcEEEee
Q 021845          250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISD  285 (306)
Q Consensus       250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~  285 (306)
                                              +++|.++|+|.+
T Consensus       136 ------------------------~~~P~~~i~I~~  147 (148)
T cd01927         136 ------------------------NDRPYEDIKIIN  147 (148)
T ss_pred             ------------------------CCCCcCCeEEEe
Confidence                                    589999999985

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=1e-42  Score=298.49  Aligned_cols=147  Identities=30%  Similarity=0.483  Sum_probs=132.2

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      .+|+.|+|+||||.+.||+||+||++||++ ++|+|+.||||+++|++|+||+   .+++.++.+++        +..|+
T Consensus         5 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-g~Y~~~~f~rv~~~f~iq~Gd~---~~~g~g~~~~~--------~~~~~   72 (153)
T cd01928           5 LHTNLGDIKIELFCDDCPKACENFLALCAS-GYYNGCIFHRNIKGFMVQTGDP---TGTGKGGESIW--------GKKFE   72 (153)
T ss_pred             EEEccccEEEEEcCCCCcHHHHHHHHHHhc-CccCCcEEEEeCCCCEEEcccc---CCCCCCCCccC--------CCccc
Confidence            368899999999999999999999999999 9999999999999999999997   45666666654        35677


Q ss_pred             CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845          171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS  249 (306)
Q Consensus       171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~  249 (306)
                      +|.. .++|+++|+|+|++.          ++++++|||||++++  .++||++|+|||||++|||||++|+++++++  
T Consensus        73 ~e~~~~~~~~~~G~v~ma~~----------~~~~~~SqFfI~~~~--~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~--  138 (153)
T cd01928          73 DEFRETLKHDSRGVVSMANN----------GPNTNGSQFFITYAK--QPHLDGKYTVFGKVIDGFETLDTLEKLPVDK--  138 (153)
T ss_pred             cccccCCCcCCCcEEEEeeC----------CCCCcccEEEEEeCC--CcccCCCceEEEEEEeCHHHHHHHHcCCCCC--
Confidence            7765 578999999999997          789999999999998  8999999999999999999999999998864  


Q ss_pred             hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeee
Q 021845          250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCG  287 (306)
Q Consensus       250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg  287 (306)
                                              .++|.++|+|.+|.
T Consensus       139 ------------------------~~~P~~~i~I~~~~  152 (153)
T cd01928         139 ------------------------KYRPLEEIRIKDVT  152 (153)
T ss_pred             ------------------------CCCCcCCeEEEEeE
Confidence                                    58999999999984

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=2e-41  Score=299.94  Aligned_cols=151  Identities=26%  Similarity=0.401  Sum_probs=124.5

Q ss_pred             CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845           92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP  171 (306)
Q Consensus        92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d  171 (306)
                      +|+.|+|+||||.+.||+||+||++||+. +||+|+.||||+++|+||||++.  ...  ++ ..+        +..+.+
T Consensus        34 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~-g~Ydg~~FhRvi~~f~iQgG~~~--~~~--~~-~~~--------~~~~~~   99 (190)
T PRK10903         34 TTSAGNIELELNSQKAPVSVKNFVDYVNS-GFYNNTTFHRVIPGFMIQGGGFT--EQM--QQ-KKP--------NPPIKN   99 (190)
T ss_pred             EeccccEEEEEeCCCCcHHHHHHHHHHhc-CCcCCcEEEEEeCCceEEeCCcC--CCC--CC-CCC--------CCcccC
Confidence            45679999999999999999999999999 99999999999999999999862  111  11 111        234556


Q ss_pred             CcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCC-----CCcEEEEEEcCHHHHHHHHcCCCC
Q 021845          172 NAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDN-----KNIVFGTVLQGLDVVAAIASIPTY  246 (306)
Q Consensus       172 e~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg-----~~tVFGrVv~GmdVl~kI~~~~t~  246 (306)
                      |.....|+++|+|+||+.+         ++|+++|||||++++  .++||+     +|+|||||++|||||++|++++++
T Consensus       100 e~~~~l~~~~G~lama~~~---------~~~sn~SQFfIt~~~--~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~  168 (190)
T PRK10903        100 EADNGLRNTRGTIAMARTA---------DKDSATSQFFINVAD--NAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH  168 (190)
T ss_pred             cccccCcCCCcEEEeCCCC---------CCCCcccEEEEECcC--cccccCCccCCCccEEEEEecCHHHHHHHHcCCCC
Confidence            6544456678999999974         689999999999998  889984     899999999999999999999986


Q ss_pred             CCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          247 KPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       247 ~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      +.                      +...++|.++|+|.+|+++
T Consensus       169 ~~----------------------~~~~~~P~~~v~I~~~~v~  189 (190)
T PRK10903        169 DV----------------------GPYQNVPSKPVVILSAKVL  189 (190)
T ss_pred             CC----------------------CCCCCcccCCeEEEEEEEe
Confidence            30                      1114799999999999886

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=5.3e-42  Score=291.90  Aligned_cols=144  Identities=26%  Similarity=0.466  Sum_probs=128.8

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      ..|+.|+|+||||.+.||+||+||++||++ ++|+++.||||+++|++|+||+   .+++.++.+++        +..|+
T Consensus         2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-g~Y~~~~f~Rvi~~f~iq~Gd~---~~~g~~~~~~~--------~~~~~   69 (146)
T cd01922           2 LETTMGEITLELYWNHAPKTCKNFYELAKR-GYYNGTIFHRLIKDFMIQGGDP---TGTGRGGASIY--------GKKFE   69 (146)
T ss_pred             eEeccccEEEEEcCCCCcHHHHHHHHHHhc-CCcCCcEEEEEcCCcEEEeccc---CCCCCCccccc--------CCCcc
Confidence            368899999999999999999999999999 9999999999999999999997   45566666655        34577


Q ss_pred             CCc-ccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845          171 PNA-FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS  249 (306)
Q Consensus       171 de~-~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~  249 (306)
                      +|. ..++|+++|+|+|++.          ++++++|||||++++  .|+||++|+|||||++|||||++|++++++   
T Consensus        70 ~e~~~~~~h~~~G~l~ma~~----------~~~s~~sqFfIt~~~--~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~---  134 (146)
T cd01922          70 DEIHPELKHTGAGILSMANA----------GPNTNGSQFFITLAP--TPWLDGKHTIFGRVSKGMKVIENMVEVQTQ---  134 (146)
T ss_pred             cccccCcCCCCCeEEEEeeC----------CCCCCccEEEEEcCC--CcccCCCCCEEEEEEcCHHHHHHHHhCCCC---
Confidence            774 4689999999999997          799999999999998  999999999999999999999999999886   


Q ss_pred             hhhhhhhhhHhhhcccccccccccCCCCCCcEEEee
Q 021845          250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISD  285 (306)
Q Consensus       250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~  285 (306)
                                              .++|.++|+|.+
T Consensus       135 ------------------------~~~P~~~I~I~~  146 (146)
T cd01922         135 ------------------------TDRPIDEVKILK  146 (146)
T ss_pred             ------------------------CCCcCCCeEEeC
Confidence                                    389999999963

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=8.3e-41  Score=291.52  Aligned_cols=152  Identities=24%  Similarity=0.380  Sum_probs=135.1

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      ..|++|+|+||||.+.||+||+||++||+. ++|+|+.||||+++|+||+||+   .+++.+|.+++        +..|.
T Consensus        10 i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~-~~Y~~~~f~Rvi~~f~iQgGd~---~~~g~g~~s~~--------g~~~~   77 (171)
T cd01925          10 LKTTAGDIDIELWSKEAPKACRNFIQLCLE-GYYDNTIFHRVVPGFIIQGGDP---TGTGTGGESIY--------GEPFK   77 (171)
T ss_pred             EEEccccEEEEEeCCCChHHHHHHHHHHhc-CCCCCCEEEEEcCCcEEEcccc---CCCCccCcccC--------CCccC
Confidence            356779999999999999999999999999 9999999999999999999997   45667777765        34577


Q ss_pred             CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEE-cCHHHHHHHHcCCCCCC
Q 021845          171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVL-QGLDVVAAIASIPTYKP  248 (306)
Q Consensus       171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv-~GmdVl~kI~~~~t~~~  248 (306)
                      +|.. .++|+++|+|+|++.          ++++++|||||++++  .++||++|+|||||+ ++|++|++|+++++++ 
T Consensus        78 ~E~~~~~~~~~~G~l~ma~~----------g~~s~~sqFfIt~~~--~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~-  144 (171)
T cd01925          78 DEFHSRLRFNRRGLVGMANA----------GDDSNGSQFFFTLDK--ADELNNKHTLFGKVTGDTIYNLLKLAEVETDK-  144 (171)
T ss_pred             cccccCcCCCCCcEEEECcC----------CCCCcccEEEEEcCC--CcccCCCceEEEEEEECcHHHHHHHhcCCcCC-
Confidence            7754 578899999999998          788999999999997  999999999999999 4688999999998874 


Q ss_pred             chhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          249 SERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       249 ~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                                               +++|.++|+|.+|+++.++
T Consensus       145 -------------------------~~~P~~~i~I~~~~i~~~p  163 (171)
T cd01925         145 -------------------------DERPVYPPKITSVEVLENP  163 (171)
T ss_pred             -------------------------CCCcCCCeEEEEEEEEcCC
Confidence                                     5789999999999999984

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-41  Score=325.59  Aligned_cols=153  Identities=31%  Similarity=0.436  Sum_probs=142.6

Q ss_pred             CCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCC
Q 021845           86 PTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPN  165 (306)
Q Consensus        86 ~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~  165 (306)
                      +.-++..|+.|+|.|.||+++||+||+||...|++ +||+|..|||||+|||||+||+   .++|+||++||        
T Consensus       404 ~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rn-gyy~~~~fhriik~fmiqtgdp---~g~gtggesiw--------  471 (558)
T KOG0882|consen  404 GKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRN-GYYDNHTFHRIIKGFMIQTGDP---LGDGTGGESIW--------  471 (558)
T ss_pred             ccceEEEecccceEEEecccccchhhhhhhccccC-ccccCcchHHhhhhheeecCCC---CCCCCCCcccc--------
Confidence            44557889999999999999999999999999999 9999999999999999999998   89999999998        


Q ss_pred             CCCCCCCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCC
Q 021845          166 TDTLRPNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIP  244 (306)
Q Consensus       166 g~~~~de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~  244 (306)
                      |+.|+||-. .|+|++|-+|||||.          ||||||||||||+.+  +||||++|+|||||+.|||||++|+++.
T Consensus       472 g~dfedefh~~lrhdrpft~smana----------g~ntngsqffit~~~--tpwld~khtvfgrv~~gm~vvqri~~v~  539 (558)
T KOG0882|consen  472 GKDFEDEFHPNLRHDRPFTVSMANA----------GPNTNGSQFFITTVP--TPWLDGKHTVFGRVTAGMDVVQRIEQVK  539 (558)
T ss_pred             cccchhhcCcccccCCCceEEeccc----------CCCCCCceEEEEecC--ccccCCcceeEEEEecchhHHhHhhhcc
Confidence            566888865 699999999999998          899999999999998  9999999999999999999999999999


Q ss_pred             CCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeE
Q 021845          245 TYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGE  288 (306)
Q Consensus       245 t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~  288 (306)
                      |++                          .+||+++|.|.+.-+
T Consensus       540 t~k--------------------------~drp~e~v~iinisv  557 (558)
T KOG0882|consen  540 TDK--------------------------YDRPYEDVKIINISV  557 (558)
T ss_pred             cCc--------------------------CCCCCCceeEEEEec
Confidence            976                          699999999988643

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-41  Score=317.53  Aligned_cols=157  Identities=27%  Similarity=0.410  Sum_probs=148.7

Q ss_pred             CCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCC
Q 021845           86 PTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPN  165 (306)
Q Consensus        86 ~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~  165 (306)
                      ++|+...|+.|.|-|||+++.+|++|+||++||+. +||+|+.|||.|++|||||||+   .++|.||++||        
T Consensus       277 kgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~-gYYnnt~FHRsIrnFmiQGGDP---TGTG~GGeSiW--------  344 (518)
T KOG0883|consen  277 KGYVRLVTNHGPLNLELHCDYAPRACENFITLCKN-GYYNNTIFHRSIRNFMIQGGDP---TGTGRGGESIW--------  344 (518)
T ss_pred             cceEEEeccCCceeeEeecCcchHHHHHHHHHHhc-ccccchHHHHHHHHHeeeCCCC---CCCCCCCcccc--------
Confidence            67788899999999999999999999999999999 9999999999999999999998   88999999998        


Q ss_pred             CCCCCCCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCC
Q 021845          166 TDTLRPNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIP  244 (306)
Q Consensus       166 g~~~~de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~  244 (306)
                      |..|.||.. .+.|+.+|+|||||+          |||||||||||+..+  +.|||++|+||||||-|+|+|.+|+.++
T Consensus       345 gKpFkDEf~~~l~H~gRGvlSMANs----------GpnTNgSQFFItyrs--ckhLd~KHTIFGrvVGGldtL~amEnve  412 (518)
T KOG0883|consen  345 GKPFKDEFCSNLSHDGRGVLSMANS----------GPNTNGSQFFITYRS--CKHLDNKHTIFGRVVGGLDTLTAMENVE  412 (518)
T ss_pred             CCccccccCCCCCcCCcceEeeccC----------CCCCCCceEEEEecc--hhhccccceeeeeeeccHHHHHHHhcCC
Confidence            577888854 799999999999999          899999999999998  9999999999999999999999999999


Q ss_pred             CCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          245 TYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       245 t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                      +++                          .++|+.+|+|.+.-|..++
T Consensus       413 ~d~--------------------------~DrP~e~I~i~~~~VFVdP  434 (518)
T KOG0883|consen  413 TDE--------------------------KDRPKEEIKIEDAIVFVDP  434 (518)
T ss_pred             CCC--------------------------CCCcccceEEeeeEEeeCc
Confidence            986                          5999999999999999885

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=1.3e-39  Score=282.13  Aligned_cols=151  Identities=25%  Similarity=0.391  Sum_probs=122.0

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      ..|+.|+|+|+||.+.||+||+||++||+. +||+|+.||||+++|+||||+..  .+.+..   .+        +..+.
T Consensus         4 ~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-g~Yd~~~fhRvi~~f~iQgGd~~--~~~~~~---~~--------~~~~~   69 (164)
T PRK10791          4 FHTNHGDIVIKTFDDKAPETVKNFLDYCRE-GFYNNTIFHRVINGFMIQGGGFE--PGMKQK---AT--------KEPIK   69 (164)
T ss_pred             EEEccccEEEEEeCCCCcHHHHHHHHHHhc-CCcCCcEEEEEecCcEEEeCCcC--CCCCcC---CC--------CCCcC
Confidence            368899999999999999999999999999 99999999999999999999862  222111   11        23455


Q ss_pred             CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCC-------C-CCcEEEEEEcCHHHHHHHH
Q 021845          171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLD-------N-KNIVFGTVLQGLDVVAAIA  241 (306)
Q Consensus       171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LD-------g-~~tVFGrVv~GmdVl~kI~  241 (306)
                      +|.. .++| ++|+||||+.+         +|++++|||||++.+  .++||       + +|+|||||++|||||++|+
T Consensus        70 ~e~~~~~~~-~~G~lsma~~~---------~p~s~~SQFfI~~~~--~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~  137 (164)
T PRK10791         70 NEANNGLKN-TRGTLAMARTQ---------APHSATAQFFINVVD--NDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIK  137 (164)
T ss_pred             CcccccccC-CCcEEEECCCC---------CcCCccceEEEEecC--chhhcccccccCCCCccEEEEEecCHHHHHHHH
Confidence            5533 3445 68999999974         589999999999997  77776       3 7999999999999999999


Q ss_pred             cCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          242 SIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       242 ~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      ++++++.              |.        ..++|.++|+|.+|.+.
T Consensus       138 ~~~~~~~--------------~~--------~~~~P~~~v~I~~~~i~  163 (164)
T PRK10791        138 GVATGRS--------------GM--------HQDVPKEDVIIESVTVS  163 (164)
T ss_pred             cCcCCCC--------------Cc--------cCCCcCCCeEEEEEEEe
Confidence            9988630              00        03699999999999764

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=8.9e-39  Score=274.58  Aligned_cols=147  Identities=27%  Similarity=0.428  Sum_probs=121.6

Q ss_pred             CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845           92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP  171 (306)
Q Consensus        92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d  171 (306)
                      .|+.|+|+||||.+.||+||+||++||+. +||+|+.||||+|+|+||+||+.  ... ..+  .+        +..+.+
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-g~Yd~~~fhRvi~~f~iQ~Gd~~--~~~-~~~--~~--------~~~~~~   68 (155)
T cd01920           3 QTSLGDIVVELYDDKAPITVENFLAYVRK-GFYDNTIFHRVISGFVIQGGGFT--PDL-AQK--ET--------LKPIKN   68 (155)
T ss_pred             EecceeEEEEEeCCCCcHHHHHHHHHHhc-CCCCCCEEEEEeCCcEEEeCCCC--CCC-Ccc--cc--------CCcccC
Confidence            67899999999999999999999999999 99999999999999999999872  111 111  11        234556


Q ss_pred             CcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCC-----CCcEEEEEEcCHHHHHHHHcCCCC
Q 021845          172 NAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDN-----KNIVFGTVLQGLDVVAAIASIPTY  246 (306)
Q Consensus       172 e~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg-----~~tVFGrVv~GmdVl~kI~~~~t~  246 (306)
                      |.....|+++|+|+||+.+         ++++++|||||++++  .++||+     +|+|||||++|||||++|++++++
T Consensus        69 e~~~~~~~~~G~v~ma~~~---------~~~s~~SqFfI~~~~--~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~  137 (155)
T cd01920          69 EAGNGLSNTRGTIAMARTN---------APDSATSQFFINLKD--NASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETY  137 (155)
T ss_pred             cccccccCCceEEEECCCC---------CCCCccceEEEECCC--chhcCCcccCCCccEEEEEecCHHHHHHHHcCCcc
Confidence            6544456778999999974         689999999999998  899995     799999999999999999999997


Q ss_pred             CCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEee
Q 021845          247 KPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISD  285 (306)
Q Consensus       247 ~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~  285 (306)
                      ..                      +...++|+.+|+|.+
T Consensus       138 ~~----------------------~~~~~~p~~~v~i~~  154 (155)
T cd01920         138 SF----------------------GSYQDVPVQDVIIES  154 (155)
T ss_pred             CC----------------------CCcCCCcCCCeEEEE
Confidence            40                      111379999999986

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-39  Score=259.19  Aligned_cols=152  Identities=28%  Similarity=0.451  Sum_probs=139.3

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      ..|..|+|.||||.+.+|++|+||+.||.. .||+|+.|||-+|||++|+|++   ...|.+|.+||        |.+|+
T Consensus         5 lht~~gdikiev~~e~tpktce~~l~~~~~-~~~n~~~~~~~~~~f~v~~~~~---~~tgrgg~siw--------g~~fe   72 (161)
T KOG0884|consen    5 LHTDVGDIKIEVFCERTPKTCENFLALCAS-DYYNGCIFHRNIKGFMVQTGDP---THTGRGGNSIW--------GKKFE   72 (161)
T ss_pred             EeeccCcEEEEEEecCChhHHHHHHHHhhh-hhccceeecCCCCCcEEEeCCC---CCCCCCCcccc--------CCcch
Confidence            478899999999999999999999999999 9999999999999999999998   78889999998        56788


Q ss_pred             CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845          171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS  249 (306)
Q Consensus       171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~  249 (306)
                      ||.. .|+|+.+|+|||||.          |||+|+||||||.+.  .+|||-+|+|||+||+|+|.|+.|+++++++. 
T Consensus        73 de~~~~lkh~~rg~vsmann----------gp~tn~sqffity~k--q~hldmkytvfgkvidg~etldele~l~v~~k-  139 (161)
T KOG0884|consen   73 DEYSEYLKHNVRGVVSMANN----------GPNTNGSQFFITYGK--QPHLDMKYTVFGKVIDGLETLDELEKLPVNEK-  139 (161)
T ss_pred             HHHHHHHhhccceeEEcccC----------CCCCCCceEEEEecC--CCccceeEeeeeeeccchhhHHHHhhcccCcc-
Confidence            8855 589999999999998          899999999999998  99999999999999999999999999999851 


Q ss_pred             hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEecc
Q 021845          250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKL  291 (306)
Q Consensus       250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~  291 (306)
                                              ..||+.++.|.+.-+-..
T Consensus       140 ------------------------tyrpl~~~~ik~itihan  157 (161)
T KOG0884|consen  140 ------------------------TYRPLNDVHIKDITIHAN  157 (161)
T ss_pred             ------------------------ccccchheeeeeeEEecC
Confidence                                    378999999988766443

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-38  Score=270.88  Aligned_cols=161  Identities=29%  Similarity=0.592  Sum_probs=148.0

Q ss_pred             CCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc--CccccCceeEe---ecCCeEE
Q 021845           64 ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS--RSLYRNTLVHK---IFPGQFF  138 (306)
Q Consensus        64 ~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~--~~~Y~gt~FhR---Vi~~f~i  138 (306)
                      ++++||+|+++                +++++||++++||.|..|+|++||..||++  +..|+++.|||   .+++||+
T Consensus         2 ~~~~vf~d~~~----------------~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~   65 (167)
T KOG0865|consen    2 VNPTVFFDIAI----------------DGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMC   65 (167)
T ss_pred             CCCeeeeeeee----------------cCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceee
Confidence            57899999999                789999999999999999999999999995  45699999999   3457999


Q ss_pred             EcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCC
Q 021845          139 LAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCP  218 (306)
Q Consensus       139 q~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p  218 (306)
                      |+||.  +.+++++|.++|        +++|+||+|.++|..+|+|+|||.          +||+|+|||||++..  ..
T Consensus        66 qggDf--t~hngtggkSiy--------~ekF~DenFilkhtgpGiLSmaNa----------gpntngsqffictak--te  123 (167)
T KOG0865|consen   66 QGGDF--TCHNGTGGKSIY--------GEKFDDENFILKHTGPGILSMANA----------GPNTNGSQFFICTAK--TE  123 (167)
T ss_pred             ccCcc--cccCCccceEec--------ccccCCcCcEEecCCCCeeehhhc----------CCCccccEEEEEccc--cc
Confidence            99985  789999999997        678999999999999999999998          899999999999998  79


Q ss_pred             CCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          219 QLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       219 ~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      |||++|+|||+|.+||+++++|+.....                           ++++.++|.|.+||+|
T Consensus       124 wLdgkhVVfGkv~eGm~iv~a~e~~gs~---------------------------~gk~~~~i~i~dcg~l  167 (167)
T KOG0865|consen  124 WLDGKHVVFGKVKEGMDIVEAMERFGSR---------------------------NGKTSKKITIADCGQL  167 (167)
T ss_pred             cccCceeEcCceEcccchhhhhhccCCc---------------------------CCcccccEEEecCCcC
Confidence            9999999999999999999999996543                           5899999999999986

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=1.6e-36  Score=259.07  Aligned_cols=145  Identities=39%  Similarity=0.667  Sum_probs=121.2

Q ss_pred             ceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcc
Q 021845           95 LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAF  174 (306)
Q Consensus        95 ~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~  174 (306)
                      +|+|+||||.+.||++|+||++||+. ++|+|+.|||++++++||+|++.   ..+..+....      ..+..+++|..
T Consensus         9 ~G~i~ieL~~~~aP~~~~nF~~l~~~-~~y~g~~f~ri~~~~~i~~G~~~---~~~~~~~~~~------~~~~~~~~E~~   78 (155)
T PF00160_consen    9 LGRIVIELFGDEAPKTVENFLRLCTS-GFYDGTKFHRIIPNFVIQGGDPT---GNGGYGREDS------TGGEPIPDEFN   78 (155)
T ss_dssp             EEEEEEEEETTTSHHHHHHHHHHHHT-TSSTTEBEEEEETTTEEEESSTT---TSSSSTSEEB------TTBSCBSSSGB
T ss_pred             ccCEEEEEeCCCCcHHHHhhehhhcc-cccCCceeecccccceeeeeecc---CCCCcccccc------cCccccccccc
Confidence            89999999999999999999999999 99999999999999999999972   2111111000      01234777763


Q ss_pred             --cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhh
Q 021845          175 --LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERI  252 (306)
Q Consensus       175 --~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~  252 (306)
                        .+.| ++|+|+|++.+.        .+++++|||||++++  .++||++|+|||+|++||+||++|++++++      
T Consensus        79 ~~~~~~-~~G~v~~~~~~~--------~~~~~~sqF~I~l~~--~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~------  141 (155)
T PF00160_consen   79 PSLLKH-RRGLVSMARSGK--------DPNSNGSQFFITLSD--APHLDGKYTVFGRVIEGMDVLDKIEAGPTD------  141 (155)
T ss_dssp             TTSSSS-STTEEEEEBSSS--------STTEBSSEEEEESSC--GGGGTTTSEEEEEEEEHHHHHHHHHTSBBT------
T ss_pred             cccccc-cceeeeeccccc--------CCCCCCceEEeeccC--CCccccceeeeeEEehhHHHHHHHHCCCCC------
Confidence              4556 789999998731        488899999999998  899999999999999999999999998775      


Q ss_pred             hhhhhhHhhhcccccccccccCCCCCCcEEEeeeeE
Q 021845          253 QKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGE  288 (306)
Q Consensus       253 ~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~  288 (306)
                                            ++|.++|+|.+|||
T Consensus       142 ----------------------~~p~~~v~I~~cgv  155 (155)
T PF00160_consen  142 ----------------------ERPKQDVTISSCGV  155 (155)
T ss_dssp             ----------------------TEBSSTEEEEEEEE
T ss_pred             ----------------------CccCCCeEEEEeEC
Confidence                                  39999999999997

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=2.6e-36  Score=255.51  Aligned_cols=143  Identities=38%  Similarity=0.620  Sum_probs=123.8

Q ss_pred             CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845           92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP  171 (306)
Q Consensus        92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d  171 (306)
                      .|+.|+|+||||.+.+|++|+||++||++ ++|+++.||||+++++||+|++.  . .+..+ +.+        +..+++
T Consensus         3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~~~-~~Y~~~~f~rv~~~~~iq~Gd~~--~-~~~~~-~~~--------~~~~~~   69 (146)
T cd00317           3 DTTKGRIVIELYGDEAPKTVENFLSLARG-GFYDGTTFHRVIPGFMIQGGDPT--G-TGGGG-SGP--------GYKFPD   69 (146)
T ss_pred             EeccCcEEEEEcCCCChHHHHHHHHHHhc-CCcCCCEEEEEeCCCeEEECCCC--C-CCCCC-CcC--------CCccCC
Confidence            57789999999999999999999999999 89999999999999999999972  2 21111 111        356777


Q ss_pred             Cccccc-CCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCch
Q 021845          172 NAFLLK-HSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSE  250 (306)
Q Consensus       172 e~~~l~-h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~  250 (306)
                      |..... |+++|+|+|++.          ++++++|||||++.+  .++||++|+|||||++|||||++|++.++++   
T Consensus        70 E~~~~~~~~~~G~v~~~~~----------~~~~~~sqF~Itl~~--~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~---  134 (146)
T cd00317          70 ENFPLKYHHRRGTLSMANA----------GPNTNGSQFFITTAP--TPHLDGKHTVFGKVVEGMDVVDKIERGDTDE---  134 (146)
T ss_pred             ccccCcCcCCCcEEEEeeC----------CCCCcccEEEEECCC--CcccCCCceEEEEEeCCHHHHHHHHcCCCCC---
Confidence            776554 888999999997          678899999999997  9999999999999999999999999999975   


Q ss_pred             hhhhhhhhHhhhcccccccccccCCCCCCcEEEee
Q 021845          251 RIQKYNELAAFIGDKRADTARAIWNRPLKTVYISD  285 (306)
Q Consensus       251 ~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~  285 (306)
                                             +++|.++|+|.+
T Consensus       135 -----------------------~~~P~~~i~I~~  146 (146)
T cd00317         135 -----------------------NGRPIKPVTISD  146 (146)
T ss_pred             -----------------------CCcCcCceEEeC
Confidence                                   589999999974

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=2e-35  Score=258.72  Aligned_cols=139  Identities=23%  Similarity=0.296  Sum_probs=107.5

Q ss_pred             CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCC--------ccCCC-----
Q 021845           92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLG--------ELHPP-----  158 (306)
Q Consensus        92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g--------~s~~~-----  158 (306)
                      .|+.|+|+||||.+.||+||+||++||+. +||+++.||||+++|+||+||+.   +++.++        ..++.     
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~-g~Ydg~~FhRVi~~fviQgGdp~---~~~~~~~~~~~~~~~~~p~e~~~~   78 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLVER-GFYDGMEFHRVEGGFVVQTGDPQ---GKNPGFPDPETGKSRTIPLEIKPE   78 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHHHh-CCcCCCEEEEecCCcEEEecCCC---CCCCCcccccccccccccceeccc
Confidence            58899999999999999999999999999 99999999999999999999972   221111        00000     


Q ss_pred             CCCCCCCCCCC-----CCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCC-----CCCCCCCCCCcEEE
Q 021845          159 LDFLPPNTDTL-----RPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP-----GPCPQLDNKNIVFG  228 (306)
Q Consensus       159 ~~~~~~~g~~~-----~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~-----~~~p~LDg~~tVFG  228 (306)
                      ....+..+..+     .+++..+.|+++|+|+|||.++        .+|+++|||||++++     ++.++||++|+|||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~--------~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG  150 (176)
T cd01924          79 GQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEF--------DPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFG  150 (176)
T ss_pred             CCCCCccCcccccccccccccccccCCCCeEEEccCCC--------CCCCccceEEEEeccccccCCCCCccCCCceEEE
Confidence            00000111122     2445567888899999999841        269999999999982     12899999999999


Q ss_pred             EEEcCHHHHHHHHc
Q 021845          229 TVLQGLDVVAAIAS  242 (306)
Q Consensus       229 rVv~GmdVl~kI~~  242 (306)
                      ||++|||||++|+.
T Consensus       151 ~VveG~dvl~~I~~  164 (176)
T cd01924         151 YVTDGLDILRELKV  164 (176)
T ss_pred             EEecCHHHHHhhcC
Confidence            99999999999976

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-35  Score=271.91  Aligned_cols=162  Identities=27%  Similarity=0.334  Sum_probs=144.4

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      .+|++|+|+|+||-+.+|.+|.||++||+- .||+.+.||.|..+|.+|.||+   .++|.||.++|+.-+.. -+..|.
T Consensus         5 ieTtlGDlvIDLf~~erP~~clNFLKLCk~-KYYN~clfh~vq~~f~aQTGDP---tGtG~GG~si~~~lyG~-q~rffe   79 (479)
T KOG0415|consen    5 IETTLGDLVIDLFVKERPRTCLNFLKLCKI-KYYNFCLFHTVQRDFTAQTGDP---TGTGDGGESIYGVLYGE-QARFFE   79 (479)
T ss_pred             EEeecccEEeeeecccCcHHHHHHHHHHhH-hhcccceeeeccccceeecCCC---CCCCCCcceeeeecccc-cchhhh
Confidence            578999999999999999999999999999 9999999999999999999998   77899999998654311 133456


Q ss_pred             CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845          171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS  249 (306)
Q Consensus       171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~  249 (306)
                      +|.. .++|.+.|+|||++.          |.|.+||||||||+.+ ...|||+|+|||+|++|||+|.||+..-+++  
T Consensus        80 aE~~p~l~Hsk~G~vsmvs~----------g~n~~gSQF~iTlgen-LdyLDg~htvfGqV~EG~dtl~kiNea~vD~--  146 (479)
T KOG0415|consen   80 AEFLPKLKHSKMGTVSMVSA----------GENLNGSQFFITLGEN-LDYLDGKHTVFGQVAEGFDTLTKINEAIVDP--  146 (479)
T ss_pred             hhhcccccccccceEEeecC----------CcccccceEEEEcccc-ccccccccceeeehhhhHHHHHHHHHHhcCC--
Confidence            6644 699999999999997          7889999999999984 8999999999999999999999999987775  


Q ss_pred             hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccCCC
Q 021845          250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPN  294 (306)
Q Consensus       250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~~~  294 (306)
                                              .++|+++|+|.+.-+|.++.+
T Consensus       147 ------------------------~~rPykdIRI~HTiiLdDPFd  167 (479)
T KOG0415|consen  147 ------------------------KNRPYKDIRIKHTIILDDPFD  167 (479)
T ss_pred             ------------------------CCCcccceeeeeeEEecCCCC
Confidence                                    599999999999999999744

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.5e-35  Score=273.88  Aligned_cols=165  Identities=22%  Similarity=0.322  Sum_probs=146.1

Q ss_pred             CCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCC
Q 021845           82 EGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDF  161 (306)
Q Consensus        82 ~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~  161 (306)
                      ++.-++.|+..|+.|.|.||||+..||++|.||++||.. +||+|+.|||++|||.+||||+   .++|+||++||    
T Consensus         8 EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGe-gyy~nt~fhrlvp~f~~Qggdp---~~~gtGgesiy----   79 (439)
T KOG0885|consen    8 EPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLE-GYYDNTEFHRLVPGFLVQGGDP---TGTGTGGESIY----   79 (439)
T ss_pred             CCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHh-ccccCceeeeeccchhcccCCC---CCCCCCccccc----
Confidence            334456666788889999999999999999999999999 9999999999999999999998   88999999998    


Q ss_pred             CCCCCCCCCCCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEE-cCHHHHHH
Q 021845          162 LPPNTDTLRPNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVL-QGLDVVAA  239 (306)
Q Consensus       162 ~~~~g~~~~de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv-~GmdVl~k  239 (306)
                          |..|.+|.. .+++.++|+|+|||.          +.+.||||||+||++  ++|||++|++||+|+ +-.-.+.+
T Consensus        80 ----g~~fadE~h~Rlrf~rrGlvgmana----------~~~~ngsqFfftl~~--~~el~nk~tiFGKVtGdtIYn~lr  143 (439)
T KOG0885|consen   80 ----GRPFADEFHPRLRFNRRGLVGMANA----------GNDDNGSQFFFTLGD--TPELNNKHTIFGKVTGDTIYNMLR  143 (439)
T ss_pred             ----cccchhhcCcceeeeccceeeeccc----------CCCCCCceEEEEecC--ChHhcccCceeeeecchhhhhhhh
Confidence                567888865 689999999999998          457799999999998  999999999999999 46778899


Q ss_pred             HHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccCCCCC
Q 021845          240 IASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPNAT  296 (306)
Q Consensus       240 I~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~~~~~  296 (306)
                      |..+.++.                          ++||..+-+|.+|.|+..++++.
T Consensus       144 i~e~eida--------------------------~~Rp~~p~kI~s~EV~~npFdDI  174 (439)
T KOG0885|consen  144 ISEVEIDA--------------------------DDRPVDPPKIKSVEVLINPFDDI  174 (439)
T ss_pred             hccccccc--------------------------ccCCCCccceeeeEeecCchhhc
Confidence            99998874                          58999999999999998855443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.00015  Score=71.14  Aligned_cols=159  Identities=15%  Similarity=0.180  Sum_probs=115.3

Q ss_pred             CCcCCCCccce----eEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCC
Q 021845           86 PTLCSSPVPLG----RLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDF  161 (306)
Q Consensus        86 ~~~~~~~t~~G----rIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~  161 (306)
                      ++-|.-.+..|    -|.|+|+.+-.|.-++-|..+|.. .++++..|-||.+.+++|.||. +...+ .+|-.    ++
T Consensus        98 Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~-~~fkklH~sPV~~i~y~qa~Ds-~vSiD-~~gmV----Ey  170 (558)
T KOG0882|consen   98 PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD-GYFKKLHFSPVKKIRYNQAGDS-AVSID-ISGMV----EY  170 (558)
T ss_pred             CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc-ceecccccCceEEEEeeccccc-eeecc-cccee----Ee
Confidence            33444556667    999999999999999999999999 9999999999999999999997 22222 12211    11


Q ss_pred             CCCC-CCCCCC--CcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHH
Q 021845          162 LPPN-TDTLRP--NAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVA  238 (306)
Q Consensus       162 ~~~~-g~~~~d--e~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~  238 (306)
                      +... ...|++  .++.++|.. -++.....          ...-.+-+|++....  .+-+..+..|||+|.+|-++++
T Consensus       171 Ws~e~~~qfPr~~l~~~~K~eT-dLy~f~K~----------Kt~pts~Efsp~g~q--istl~~DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  171 WSAEGPFQFPRTNLNFELKHET-DLYGFPKA----------KTEPTSFEFSPDGAQ--ISTLNPDRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             ecCCCcccCccccccccccccc-hhhccccc----------ccCccceEEccccCc--ccccCcccEEEEEEeccchhhh
Confidence            1111 112333  466788885 66666653          112234588888887  8888899999999999999999


Q ss_pred             HHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          239 AIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       239 kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                      .|....++.                          ...|+.++.|.+.....
T Consensus       238 eiDE~~t~~--------------------------~~q~ks~y~l~~VelgR  263 (558)
T KOG0882|consen  238 EIDEVLTDA--------------------------QYQPKSPYGLMHVELGR  263 (558)
T ss_pred             hhhccchhh--------------------------hhccccccccceeehhh
Confidence            999998874                          45677777777765543

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=95.47  E-value=0.074  Score=53.37  Aligned_cols=103  Identities=18%  Similarity=0.170  Sum_probs=63.5

Q ss_pred             eeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCccc
Q 021845           96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFL  175 (306)
Q Consensus        96 GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~  175 (306)
                      =.+.+||..+ +|..++.|+.+.+. +.++   +-+...-| |-  |      ..-.             +...+.|++.
T Consensus       201 Ty~evE~~~~-~p~s~EH~la~~~~-G~~~---Vd~~tsTf-i~--d------~~L~-------------g~~~p~En~~  253 (503)
T TIGR03268       201 TYVEVELDPN-APVSVEHFLALMED-GTFR---VDYRTSTF-IS--D------DSLR-------------GLDKPEENIE  253 (503)
T ss_pred             EEEEEEEcCC-CChhHHHHHHHHhC-CeEE---Eeeeecce-Ee--c------cccc-------------CccCCccccC
Confidence            3788898776 99999999999998 4332   00111111 10  0      0001             2233445442


Q ss_pred             ccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHc
Q 021845          176 LKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIAS  242 (306)
Q Consensus       176 l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~  242 (306)
                        ..++|+|.+.+.++          +  ...-||-..+ -.+.  -.|+|+|||++|||+++--+.
T Consensus       254 --~R~rGtVTVRn~G~----------G--~G~VYIYred-r~ss--~sHtvVG~V~~GiELid~a~~  303 (503)
T TIGR03268       254 --KRRRGAVTVRNSGV----------G--EGRVYIYRED-RPSS--LSHNVVGHVTRGIELIDIAQE  303 (503)
T ss_pred             --cccceeEEEEeecc----------C--ceeEEEEcCC-CCCC--cccceeEEEecceeeeecccC
Confidence              23469999998742          2  3468898875 2333  479999999999999875443

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=95.36  E-value=0.078  Score=53.34  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=63.7

Q ss_pred             eeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCccc
Q 021845           96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFL  175 (306)
Q Consensus        96 GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~  175 (306)
                      =.+.+||..+ +|..++.|+.+.+. +.++   +-+...-| |-  |      ..-.             +...+.|++.
T Consensus       204 Ty~eve~~~~-~p~s~EH~la~~~~-G~f~---Vd~~tstf-I~--d------~~L~-------------g~~~p~En~~  256 (508)
T PRK00969        204 TYVEVELDPG-APKSVEHFLALLED-GTFE---VDFETSTF-IA--D------DRLQ-------------GLKIPEENFE  256 (508)
T ss_pred             EEEEEEEcCC-CCchHHHHHHHHhC-CeEE---Eeeeecce-Ee--e------cccc-------------CccCCccccC
Confidence            3788898877 99999999999998 4332   00111111 00  0      0001             2334445543


Q ss_pred             ccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHc
Q 021845          176 LKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIAS  242 (306)
Q Consensus       176 l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~  242 (306)
                      -  .++|+|.+.+.++          +  ...-||...+ -.+.  -.|+|+|+|++|||+++--++
T Consensus       257 ~--R~~GtVTVRt~G~----------g--~G~vYIyred-r~ss--~sHtvVG~V~~GiELi~~a~~  306 (508)
T PRK00969        257 P--RRRGTVTVRTAGV----------G--VGKVYIYRED-RPSS--LSHTVVGRVTHGIELIDFAKE  306 (508)
T ss_pred             c--cccceEEEEeecc----------C--ceeEEEECCC-CCCC--ccceeEEEEecceeeeecccC
Confidence            2  2469999998742          2  3468998875 2233  479999999999999865443

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=95.00  E-value=0.15  Score=51.18  Aligned_cols=47  Identities=23%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             eeEEEEecCCCCchHHHHHHHHhccC-ccccCceeEeecCCeEEEcCC
Q 021845           96 GRLIIGLYGHLAPITVSNFKAMCSSR-SLYRNTLVHKIFPGQFFLAGR  142 (306)
Q Consensus        96 GrIvIeL~~d~aP~tv~NF~~L~~~~-~~Y~gt~FhRVi~~f~iq~Gd  142 (306)
                      .-|.|+||.+.||+++.-|+++.--. .--=-..+|=..++..+.=|+
T Consensus       375 ~vi~IeLydd~AP~s~~yFRk~tGL~~~~VG~L~v~F~~~d~~mFk~~  422 (503)
T TIGR03268       375 KVIEIELYDDNAPRSVWYFRKFTGLKTKPVGRLPVHFAFKEMIMFKGN  422 (503)
T ss_pred             hEEEEEEcccCCchHHHHHHHhcCCcccccceeEEEEEeCCeeEeccC
Confidence            47899999999999999999875310 011124556666775444443

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=0.1  Score=51.03  Aligned_cols=101  Identities=15%  Similarity=0.241  Sum_probs=65.2

Q ss_pred             eeEEEEecCCCCchHHHHHHHHhccCccccCceeEeec--CCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCc
Q 021845           96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIF--PGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNA  173 (306)
Q Consensus        96 GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi--~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~  173 (306)
                      -.+.+||-.+ +|+.++.|+.|... +.+      ||-  -+-++.  +.           +.   +     ....+.|+
T Consensus       203 Ty~eve~s~n-sP~saEH~lalmed-G~l------ri~~~tntfis--~~-----------~l---q-----~~~~~~en  253 (512)
T COG4070         203 TYFEVELSRN-SPKSAEHFLALMED-GTL------RIDVTTNTFIS--DD-----------TL---Q-----EEKVPEEN  253 (512)
T ss_pred             EEEEEEeCCC-CchhHHHHHHHhhc-ceE------EEEEeccceee--cc-----------cc---c-----cccCChhh
Confidence            4778888776 99999999999987 321      221  111111  10           11   1     24456667


Q ss_pred             ccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHc
Q 021845          174 FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIAS  242 (306)
Q Consensus       174 ~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~  242 (306)
                      +.++.  +|.++..|.+          -+  ...-||.-.+ ..+.|  .|.|.|||++||++++--..
T Consensus       254 ~d~Re--rG~iTvRn~G----------vg--eGrvYIyRed-R~ss~--sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         254 FDLRE--RGAITVRNVG----------VG--EGRVYIYRED-RPSSL--SHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             hhhhh--cceEEEEeee----------cc--cceEEEEecC-CCCcc--ccceeeeeecceEEEEeccc
Confidence            65553  6999999873          22  3467888775 23343  68999999999998875543

>PRK00969 hypothetical protein; Provisional

Probab=91.86  E-value=1.1  Score=45.26  Aligned_cols=113  Identities=14%  Similarity=0.088  Sum_probs=66.4

Q ss_pred             CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845           92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP  171 (306)
Q Consensus        92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d  171 (306)
                      .|+.|.|+|||.  .....+.-|+.-++.   |.|...|=--++ -+..|-.  ...                    +..
T Consensus        56 kTtkG~i~Iel~--~~~~~~~~w~e~yk~---~e~~~i~W~s~~-~vAfGp~--~s~--------------------l~p  107 (508)
T PRK00969         56 KTTKGEIVIELT--EENESVDFWLENYKE---FEGKSLRWTSRS-AVAFGPF--ESD--------------------LEP  107 (508)
T ss_pred             EccCceEEEEEc--cCcchhhHHHHhHHh---hcCCceEecccc-ceeEccc--ccC--------------------ccc
Confidence            688999999999  455667777776665   666666544443 4445532  100                    111


Q ss_pred             CcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcC
Q 021845          172 NAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASI  243 (306)
Q Consensus       172 e~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~  243 (306)
                      +.-.. ...++-|.+.-.          |-+...+.+.|...+....+-=..--+||+|+.|..+|+++..-
T Consensus       108 ~~~~~-~y~r~DV~lg~~----------G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~  168 (508)
T PRK00969        108 SREEY-EYERWDVVLSLS----------GFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDG  168 (508)
T ss_pred             ccCcc-eeecccEEEEcc----------CCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCC
Confidence            11111 223577777765          44545666666666411111100117999999999999998874

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=91.76  E-value=0.87  Score=44.75  Aligned_cols=48  Identities=21%  Similarity=0.236  Sum_probs=31.9

Q ss_pred             eeEEEEecCCCCchHHHHHHHHhcc-CccccCceeEeecCC--eEEEcCCC
Q 021845           96 GRLIIGLYGHLAPITVSNFKAMCSS-RSLYRNTLVHKIFPG--QFFLAGRQ  143 (306)
Q Consensus        96 GrIvIeL~~d~aP~tv~NF~~L~~~-~~~Y~gt~FhRVi~~--f~iq~Gd~  143 (306)
                      --|.||||.+.||+++.-|+++..- ..---..+.|-..+|  .++.-|+.
T Consensus       376 kiieIELyed~APrSv~yFRr~t~l~~kpVGkL~Vhfay~d~~~vmfegn~  426 (512)
T COG4070         376 KIIEIELYEDRAPRSVWYFRRSTGLKTKPVGKLKVHFAYDDTYLVMFEGNA  426 (512)
T ss_pred             hEEEEEecCCCCchhhHHHHhhcccccccccceEEEEEeCCceEEEEcCCh
Confidence            3689999999999999999998652 011123456666666  33444443

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=86.27  E-value=3.7  Score=35.17  Aligned_cols=43  Identities=16%  Similarity=0.241  Sum_probs=29.0

Q ss_pred             eeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCe--EEEcCC
Q 021845           96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQ--FFLAGR  142 (306)
Q Consensus        96 GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f--~iq~Gd  142 (306)
                      -.++.+|..|.||+||+-|.++    .=|.+..+|-..-|.  ++.-++
T Consensus         8 ~~~~A~l~~d~AP~Tcaa~~~~----LP~~~~~~HarwSG~ei~~~l~~   52 (147)
T PF12903_consen    8 VSFTARLLDDKAPKTCAAFWEA----LPLKGKVIHARWSGEEIWIPLPD   52 (147)
T ss_dssp             EEEEEEE-TTTSHHHHHHHHHH------EEEE-EE-SSSSSEEEEEEE-
T ss_pred             eEEEEEEcccCChHHHHHHHHh----CCCCCcEEEEEEECcEEEEECCC
Confidence            4789999999999999999987    347777777766553  444444

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	306
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		2e-11
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		2e-11
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		2e-11
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		4e-11
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		4e-11
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		5e-11
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		6e-11
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		2e-10
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		4e-10
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		4e-10
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		2e-09
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		3e-09
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		3e-09
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		3e-09
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		4e-09
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		2e-08
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		3e-08
1dyw_A	173	Biochemical And Structural Characterization Of A Di		3e-08
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		4e-08
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		4e-08
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		4e-08
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		4e-08
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		4e-08
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		4e-08
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		4e-08
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		5e-08
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		6e-08
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		6e-08
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		8e-08
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		8e-08
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		1e-07
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		1e-07
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		1e-07
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		1e-07
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		1e-07
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		1e-07
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		2e-07
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		2e-07
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		2e-07
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		3e-07
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		3e-07
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		5e-07
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		5e-07
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		1e-06
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		2e-06
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		5e-06
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		5e-06
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		5e-06
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		6e-06
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		7e-06
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		9e-06
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		1e-05
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		2e-05
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		3e-05
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		9e-05
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		2e-04
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		3e-04
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		3e-04
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		6e-04
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		6e-04
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		6e-04
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		6e-04
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		6e-04
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		7e-04

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 67/156 (42%), Gaps = 31/156 (19%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS---------LYRNTLVHKIFPGQFFLAGRQG 144
           P GR+ + L+    PIT  NF+A+C+             Y  +  H+I P QF + G   
Sbjct: 32  PAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP-QFMIQGGD- 89
Query: 145 LSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
            +R D   GE      F   N        FLL  +  G                  P+  
Sbjct: 90  FTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAG------------------PNTN 131
Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAI 240
             +F ITT P  CP LD K++VFG VL+G++VV +I
Sbjct: 132 GSQFFITTVP--CPWLDGKHVVFGKVLEGMEVVKSI 165

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 90/207 (43%), Gaps = 51/207 (24%)
Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
           +GR+I GL+G   P TV NF A+ +      Y+N+  H++    F + G    +R D   
Sbjct: 29  VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIK-DFMIQGGD-FTRGDGTG 86
Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
           G+      F   N        F LKH   G VS+  +  D +            +F ITT
Sbjct: 87  GKSIYGERFPDEN--------FKLKHYGPGWVSMANAGKDTN----------GSQFFITT 128
Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARA 272
                  LD K++VFG VL+G++VV  + S  T                  D R      
Sbjct: 129 VK--TAWLDGKHVVFGKVLEGMEVVRKVESTKT------------------DSR------ 162
Query: 273 IWNRPLKTVYISDCGELKL-KPNATTK 298
             ++PLK V I+DCG++++ KP A  K
Sbjct: 163 --DKPLKDVIIADCGKIEVEKPFAIAK 187

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 90/208 (43%), Gaps = 51/208 (24%)
Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
           +GR+I GL+G   P TV NF A+ +      Y+N+  H++    F + G    +R D   
Sbjct: 19  VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIK-DFMIQGGD-FTRGDGTG 76
Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
           G+      F   N        F LKH   G VS+  +  D +            +F ITT
Sbjct: 77  GKSIYGERFPDEN--------FKLKHYGPGWVSMANAGKDTNGS----------QFFITT 118
Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARA 272
                  LD K++VFG VL+G++VV  + S  T                  D R      
Sbjct: 119 VK--TAWLDGKHVVFGKVLEGMEVVRKVESTKT------------------DSR------ 152
Query: 273 IWNRPLKTVYISDCGELKL-KPNATTKP 299
             ++PLK V I+DCG++++ KP A  K 
Sbjct: 153 --DKPLKDVIIADCGKIEVEKPFAIAKE 178

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 30/150 (20%)
Query: 96  GRLIIGLYGHLAPITVSNFKAMCSSRSL--------YRNTLVHKIFPGQFFLAGRQGLSR 147
           GR+I  L+  + P T  NF+A+C+   +        Y+N++ H+I P QF   G   ++ 
Sbjct: 18  GRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP-QFMCQGGD-ITN 75
Query: 148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
            +   GE      F   N        F +KH + G++S+              P+  + +
Sbjct: 76  GNGSGGESIYGRSFTDEN--------FNMKHDQPGLLSM----------ANAGPNTNSSQ 117
Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVV 237
           FLIT  P  CP LD K++VFG V++G++VV
Sbjct: 118 FLITLVP--CPWLDGKHVVFGKVIEGMNVV 145

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 57/202 (28%)
Query: 96  GRLIIGLYGHLAPITVSNFKAMCSSRSL--------YRNTLVHKIFPGQFFLAGRQGLSR 147
           GR+I  L+  + P T  NF+A+C+   +        Y+N++ H+I P QF   G   ++ 
Sbjct: 18  GRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP-QFMCQGGD-ITN 75
Query: 148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
            +   GE      F   N        F +KH + G++S+              P+  + +
Sbjct: 76  GNGSGGESIYGRSFTDEN--------FNMKHDQPGLLSM----------ANAGPNTNSSQ 117
Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRA 267
           F IT  P  CP LD K++VFG V++G++VV              ++K    + ++     
Sbjct: 118 FFITLVP--CPWLDGKHVVFGKVIEGMNVV------------REMEKEGAKSGYV----- 158
Query: 268 DTARAIWNRPLKTVYISDCGEL 289
                      ++V I+DCGEL
Sbjct: 159 ----------KRSVVITDCGEL 170

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 51/208 (24%)
Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
           +GR++IGL+G   P TV NF A+ +      Y+++  H++    F + G    +R D   
Sbjct: 26  IGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIK-DFMIQGGD-FTRGDGTG 83
Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
           G+      F   N        F LKH   G VS+  +  D +            +F ITT
Sbjct: 84  GKSIYGERFPDEN--------FKLKHYGPGWVSMANAGKDTN----------GSQFFITT 125
Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARA 272
                  LD K++VFG VL+G++VV  + +  T                  D R      
Sbjct: 126 VK--TAWLDGKHVVFGKVLEGMEVVRKVETTKT------------------DGR------ 159
Query: 273 IWNRPLKTVYISDCGELKL-KPNATTKP 299
             ++PLK V I+DCG++++ KP A  K 
Sbjct: 160 --DKPLKDVTIADCGKIEVEKPFAIAKE 185

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 51/208 (24%)
Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
           +GR++IGL+G   P TV NF A+ +      Y+++  H++    F + G    +R D   
Sbjct: 26  IGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIK-DFMIQGGD-FTRGDGTG 83
Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
           G+      F   N        F LKH   G VS+  +  D +            +F ITT
Sbjct: 84  GKSIYGERFPDEN--------FKLKHYGPGWVSMANAGKDTN----------GSQFFITT 125
Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARA 272
                  LD K++VFG VL+G++VV  + +  T                  D R      
Sbjct: 126 VK--TAWLDGKHVVFGKVLEGMEVVRKVETTKT------------------DGR------ 159
Query: 273 IWNRPLKTVYISDCGELKL-KPNATTKP 299
             ++PLK V I+DCG++++ KP A  K 
Sbjct: 160 --DKPLKDVTIADCGKIEVEKPFAIAKE 185

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 25/154 (16%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+ IGL+G  AP+T  NF+ +C+      Y++++ H++   Q F+      +  D  
Sbjct: 24  PLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVI--QNFMIQGGDFTNFDGT 81
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N +        +KH  G   +L ++           P+    +F IT
Sbjct: 82  GGKSIYGEKFADENLN--------VKHFVG---ALSMA--------NAGPNTNGSQFFIT 122
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
           T   P P LD +++VFG VL G+DVV  I    T
Sbjct: 123 T--APTPWLDGRHVVFGKVLDGMDVVLRIEKTKT 154

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 51/198 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           P+GR++IGL+G+  P TV NFK + S  +   Y+ ++ H++    F + G    +  D  
Sbjct: 18  PVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIR-NFMIQGGD-FTNFDGT 75
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N   L+   F+      G VS+              P+    +F +T
Sbjct: 76  GGKSIYGTRFDDEN---LKIKHFV------GAVSMA----------NAGPNSNGSQFFVT 116
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T P   P LD +++VFG V++G+DVV  + +  T                          
Sbjct: 117 TAP--TPWLDGRHVVFGKVVEGMDVVKKVENTKT-------------------------- 148
Query: 272 AIWNRPLKTVYISDCGEL 289
            + ++P K V I+DCG L
Sbjct: 149 GLNDKPKKAVKINDCGVL 166

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 25/154 (16%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+ IGL+G  AP+T  NF+ +C+      Y++++ H++   Q F+      +  D  
Sbjct: 24  PLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVI--QNFMIQGGDFTNFDGT 81
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N +        +KH  G   +L ++           P+    +F IT
Sbjct: 82  GGKSIYGEKFADENLN--------VKHFVG---ALSMA--------NAGPNTNGSQFFIT 122
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
           T   P P LD  ++VFG VL G+DVV  I    T
Sbjct: 123 T--APTPWLDGAHVVFGKVLDGMDVVLRIEKTKT 154

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 24/154 (15%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           P+GR++  LY  + P T  NF+A+C+      Y  +  H++ P  F L G    +  +  
Sbjct: 14  PIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIP-DFMLQGGD-FTAGNGT 71
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F   H R G++S+              P+    +F IT
Sbjct: 72  GGKSIYGGKFPDEN--------FKKHHDRPGLLSMA----------NAGPNTNGSQFFIT 113
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
           T P  CP LD K++VFG V+ G D+V  + S+ +
Sbjct: 114 TVP--CPWLDGKHVVFGEVVDGYDIVKKVESLGS 145

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 32/153 (20%)
Query: 95  LGRLIIGLYGHLAPITVSNFKAMCS--SRSLYRNTLVHKIFPGQFFLAG----RQGLSRR 148
           LGR+++ L   + P T  NF+ +C       Y+ +  H+I PG     G      G   R
Sbjct: 41  LGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGR 100
Query: 149 DSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEF 208
            S  GE  P  +F              LKH++ G++S+               H    +F
Sbjct: 101 -SIYGEKFPDENFE-------------LKHTKEGILSMA----------NCGAHTNGSQF 136
Query: 209 LITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIA 241
            IT G      LD K++VFG V++G+DVV  IA
Sbjct: 137 FITLGK--TQWLDEKHVVFGEVVEGMDVVHKIA 167

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 24/164 (14%)
Query: 88  LCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGL 145
           +C+   PLGR+ + L+ ++ P T  NF+A+C+      ++N++ H++ P   F+     +
Sbjct: 13  VCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPD--FVCQGGDI 70
Query: 146 SRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
           ++ D   G+            D      F +KH+  G++S+               +  N
Sbjct: 71  TKHDGTGGQ--------SIYGDKFEDENFDVKHTGPGLLSM----------ANQGQNTNN 112
Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS 249
            +F+IT        LD K++VFG V  G+D V  I S  + K S
Sbjct: 113 SQFVITL--KKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGS 154

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 24/149 (16%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           P GR++  LY    P T  NF+ + + +    Y++++ H++ P QF L G    +R +  
Sbjct: 15  PEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIP-QFMLQGGD-FTRHNGT 72
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F +KH++ G++S+  +  + +            +F IT
Sbjct: 73  GGKSIYGEKFADEN--------FQVKHTKPGLLSMANAGANTNGS----------QFFIT 114
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAI 240
           T P     LD K++VFG V++GLD+V  +
Sbjct: 115 TVP--TSWLDGKHVVFGEVIEGLDIVRKV 141

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 24/149 (16%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           P GR++  LY    P T  NF+ + + +    Y++++ H++ P QF L G    +R +  
Sbjct: 16  PEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIP-QFMLQGGD-FTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F +KH++ G++S+  +  + +            +F IT
Sbjct: 74  GGKSIYGEKFADEN--------FQVKHTKPGLLSMANAGANTNGS----------QFFIT 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAI 240
           T P     LD K++VFG V++GLD+V  +
Sbjct: 116 TVP--TSWLDGKHVVFGEVIEGLDIVRKV 142

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  HKI PG  F+      +R +  
Sbjct: 16  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 74  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V +G+++V A+         ER    N               
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +R +  
Sbjct: 15  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 72
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 73  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 114
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V +G+++V A+         ER    N               
Sbjct: 115 TAK--TKWLDGKHVVFGAVKEGMNIVEAM---------ERFGSRN--------------- 148
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 149 ---GKTSKKITIADCGQLE 164

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 58/204 (28%)
Query: 96  GRLIIGLYGHLAPITVSNFKAMCSSRS---------LYRNTLVHKIFPGQFFLAGRQGLS 146
           GR+++ LY  + P T  NF+A+C+  +          ++ +  H+I P  F + G    +
Sbjct: 18  GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP-NFMIQGGD-FT 75
Query: 147 RRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNV 206
           R +   GE      F   N        F  KH+  GV+S+              P+    
Sbjct: 76  RGNGTGGESIYGEKFPDEN--------FKEKHTGPGVLSM----------ANAGPNTNGS 117
Query: 207 EFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKR 266
           +F + T       LD K++VFG V++GLDVV A+ S  +                     
Sbjct: 118 QFFLCTVK--TEWLDGKHVVFGRVVEGLDVVKAVESNGSQS------------------- 156
Query: 267 ADTARAIWNRPLKTVYISDCGELK 290
                    +P+K   I+DCG+LK
Sbjct: 157 --------GKPVKDCMIADCGQLK 172

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSS--RSLYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           P+GR++IGL+G   P T +NF  +        Y  +  H++    F + G    +R D  
Sbjct: 19  PIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIA-DFMIQGGD-FTRGDGT 76
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G       F   N        F LKH   G +S+  +  D +            +F IT
Sbjct: 77  GGRSIYGEKFADEN--------FKLKHYGAGWLSMANAGADTN----------GSQFFIT 118
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIAS---IPTYKPSERI 252
           T     P LD +++VFG +L+G+DVV  I     +P  +P + +
Sbjct: 119 TVK--TPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDV 160

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 26/149 (17%)
Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
           +GR++IGL+G++ P TV NF A+ +      Y+ ++ H++    F + G    + RD   
Sbjct: 21  VGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIK-DFMIQGGD-FTARDGTG 78
Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT- 211
           G        +    +T     F LKH   G VS+              P     +F IT 
Sbjct: 79  G--------MSIYGETFPDENFKLKHYGIGWVSMA----------NAGPDTNGSQFFITL 120
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAI 240
           T P     LD K++VFG VL G+ VV +I
Sbjct: 121 TKP---TWLDGKHVVFGKVLDGMTVVHSI 146

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +R +  
Sbjct: 16  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 74  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V +G+++V A+         ER    N               
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +R +  
Sbjct: 24  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 81
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 82  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 123
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V +G+++V A+         ER    N               
Sbjct: 124 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 157
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 158 ---GKTSKKITIADCGQLE 173

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +R +  
Sbjct: 16  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 74  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V +G+++V A+         ER    N               
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +R +  
Sbjct: 15  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 72
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 73  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 114
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V +G+++V A+         ER    N               
Sbjct: 115 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 148
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 149 ---GKTSKKITIADCGQLE 164

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +R +  
Sbjct: 35  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 92
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 93  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 134
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V +G+++V A+         ER    N               
Sbjct: 135 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 168
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 169 ---GKTSKKITIADCGQLE 184

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 51/198 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +R +  
Sbjct: 16  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 74  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V +G+++V A+         ER    N               
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGEL 289
               +  K + I+DCG+L
Sbjct: 150 ---GKTSKKITIADCGQL 164

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 79/209 (37%), Gaps = 58/209 (27%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS----------LYRNTLVHKIFPGQFFLAGRQ 143
           P+GR++  L+  + P T  NF  +CS              Y+ +  H++    F + G  
Sbjct: 32  PVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVK-NFMIQGGD 90
Query: 144 GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHY 203
             S  + K GE      F   N        F+LKH R  ++S+               H 
Sbjct: 91  -FSEGNGKGGESIYGGYFKDEN--------FILKHDRAFLLSM----------ANRGKHT 131
Query: 204 RNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIG 263
              +F ITT P P   LD  ++VFG V+ G +V+  I ++ T                  
Sbjct: 132 NGSQFFITTKPAP--HLDGVHVVFGLVISGFEVIEQIENLKT------------------ 171
Query: 264 DKRADTARAIWNRPLKTVYISDCGELKLK 292
               D A    +RP   V + DCG L  K
Sbjct: 172 ----DAA----SRPYADVRVIDCGVLATK 192

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 32/178 (17%)
Query: 96  GRLIIGLYGHLAPITVSNFKAMCSSRS---------LYRNTLVHKIFPGQFFLAGRQGLS 146
           GR+++ LY    P T  NF+A+C+             Y++++ H++ P  F + G    +
Sbjct: 22  GRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIP-NFMIQGGD-FT 79
Query: 147 RRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNV 206
           R +   GE             T R  +F  K  R   +  CLS  +  P+          
Sbjct: 80  RGNGTGGE--------SIYGTTFRDESFSGKAGRHTGLG-CLSMANAGPNTN------GS 124
Query: 207 EFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSER----IQKYNELAA 260
           +F I T     P LD K++VFG V+ GLDVV  +  + +     R    +    E+AA
Sbjct: 125 QFFICTAA--TPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEVAA 180

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +R +  
Sbjct: 16  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++++              P+    +F I 
Sbjct: 74  GGKSIYGEKFEDEN--------FILKHTGPGILTM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V +G+++V A+         ER    N               
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 26/170 (15%)
Query: 88  LCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGL 145
           +  +  PLG +   L+  + P T +NF+A+C+      Y  +  H++ P  F L G    
Sbjct: 8   ITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIP-DFMLQGGD-F 65
Query: 146 SRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
           +  +   G+      F   N        F LKH++ G++S+              P+   
Sbjct: 66  TAGNGTGGKSIYGAKFADEN--------FQLKHNKPGLLSMA----------NAGPNTNG 107
Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIAS--IPTYKPSERIQ 253
            +F ITT       LD K++VFG V+ G++VV AI +    + KP  RI+
Sbjct: 108 SQFFITTVV--TSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIE 155

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 51/198 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+++ L   + P T  NF+A+C+      Y+ +  H++ P   F+      +  +  
Sbjct: 17  PLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPS--FMCQAGDFTNHNGT 74
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F LKH   GV+S+              P+    +F I 
Sbjct: 75  GGKSIYGSRFPDEN--------FTLKHVGPGVLSM----------ANAGPNTNGSQFFIC 116
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V++G+DVV  I S                    G K   T+ 
Sbjct: 117 TIK--TDWLDGKHVVFGHVIEGMDVVKKIES-------------------FGSKSGRTS- 154
Query: 272 AIWNRPLKTVYISDCGEL 289
                  K + I+DCG+L
Sbjct: 155 -------KKIVITDCGQL 165

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 51/198 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+++ L   + P T  NF+A+C+      Y+ +  H++ P   F+      +  +  
Sbjct: 16  PLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPS--FMCQAGDFTNHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F LKH   GV+S+              P+    +F I 
Sbjct: 74  GGKSIYGSRFPDEN--------FTLKHVGPGVLSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V++G+DVV  I S                    G K   T+ 
Sbjct: 116 TIK--TDWLDGKHVVFGHVIEGMDVVKKIES-------------------FGSKSGRTS- 153
Query: 272 AIWNRPLKTVYISDCGEL 289
                  K + I+DCG+L
Sbjct: 154 -------KKIVITDCGQL 164

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 51/198 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+++ L   + P T  NF+A+C+      Y+ +  H++ P   F+      +  +  
Sbjct: 15  PLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPS--FMCQAGDFTNHNGT 72
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F LKH   GV+S+              P+    +F I 
Sbjct: 73  GGKSIYGSRFPDEN--------FTLKHVGPGVLSM----------ANAGPNTNGSQFFIC 114
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V++G+DVV  I S                    G K   T+ 
Sbjct: 115 TIK--TDWLDGKHVVFGHVIEGMDVVKKIES-------------------FGSKSGRTS- 152
Query: 272 AIWNRPLKTVYISDCGEL 289
                  K + I+DCG+L
Sbjct: 153 -------KKIVITDCGQL 163

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 51/198 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+++ L   + P T  NF+A+C+      Y+ +  H++ P   F+      +  +  
Sbjct: 16  PLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPS--FMCQAGDFTNHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F LKH   GV+S+              P+    +F I 
Sbjct: 74  GGKSIYGSRFPDEN--------FTLKHVGPGVLSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V++G+DVV  I S                    G K   T+ 
Sbjct: 116 TIK--TDWLDGKHVVFGHVIEGMDVVKKIES-------------------FGSKSGRTS- 153
Query: 272 AIWNRPLKTVYISDCGEL 289
                  K + I+DCG+L
Sbjct: 154 -------KKIVITDCGQL 164

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 24/152 (15%)
Query: 96  GRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSKLG 153
           GR+++ L   + P T  NF+A+C+      Y N   H++ P QF   G     + D   G
Sbjct: 25  GRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIP-QFMCQGGD-FVKGDGTGG 82
Query: 154 ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTG 213
           +      F   N        F L+H   GV+S+  S           P+    +F I T 
Sbjct: 83  KSIYGRKFDDEN--------FQLRHEGFGVLSMANS----------GPNTNGSQFFICTT 124
Query: 214 PGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
              C  LD K++VFG V+ G +VV  + S+ +
Sbjct: 125 K--CDWLDGKHVVFGRVVDGQNVVKKMESVGS 154

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +  +  
Sbjct: 16  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGNFTHHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 74  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V +G+++V A+         ER    N               
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 78/204 (38%), Gaps = 58/204 (28%)
Query: 96  GRLIIGLYGHLAPITVSNFKAMCSSRS----------LYRNTLVHKIFPGQFFLAGRQGL 145
           GR+++ LY  +AP T +NF  +C+  +           Y+ +  H++    F + G    
Sbjct: 21  GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIK-NFMIQGGD-F 78
Query: 146 SRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
           ++ D   GE                   F++KH    VVS+              P+   
Sbjct: 79  TKGDGTGGE--------SIYGGMFDDEEFVMKHDEPFVVSMA----------NKGPNTNG 120
Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDK 265
            +F ITT P   P L+N ++VFG V+ G +VV  I  + T                    
Sbjct: 121 SQFFITTTP--APHLNNIHVVFGKVVSGQEVVTKIEYLKTNSK----------------- 161
Query: 266 RADTARAIWNRPLKTVYISDCGEL 289
                    NRPL  V I +CGEL
Sbjct: 162 ---------NRPLADVVILNCGEL 176

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +R +  
Sbjct: 16  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 74  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD  ++VFG V +G+++V A+         ER    N               
Sbjct: 116 T--AKTEWLDGXHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +R +  
Sbjct: 16  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 74  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD  ++VFG V +G+++V A+         ER    N               
Sbjct: 116 T--AKTKWLDGXHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +R +  
Sbjct: 20  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 77
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 78  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 119
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD  ++VFG V +G+++V A+         ER    N               
Sbjct: 120 T--AKTKWLDGXHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 153
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 154 ---GKTSKKITIADCGQLE 169

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +  +  
Sbjct: 16  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGNFTHCNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 74  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V +G+++V A+         ER    N               
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 59/206 (28%)
Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRS----------LYRNTLVHKIFPGQFFLAGRQG 144
           +GR+++ L+  + P T  NF+A+C+              ++    H+I   +F + G   
Sbjct: 29  VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIK-KFMIQGGD- 86
Query: 145 LSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
            S ++   GE      F   N        F  KH + G++S+  + ++ +          
Sbjct: 87  FSNQNGTGGESIYGEKFEDEN--------FHYKHDKEGLLSMANAGSNTN---------- 128
Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGD 264
             +F ITT P   P LD K++VFG V++G+ V   + ++                     
Sbjct: 129 GSQFFITTVP--TPHLDGKHVVFGQVIKGMGVAKILENVEVKG----------------- 169
Query: 265 KRADTARAIWNRPLKTVYISDCGELK 290
                      +P K   I++CGELK
Sbjct: 170 ----------EKPAKLCVIAECGELK 185

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 26/163 (15%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F+      +  +  
Sbjct: 15  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTHHNGT 72
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+              P+    +F I 
Sbjct: 73  GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 114
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTY--KPSERI 252
           T       LD K++VFG V +G+++V A+    +   K S++I
Sbjct: 115 TAK--TEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKI 155

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 51/199 (25%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +      Y+ +  H+I PG  F       +R +  
Sbjct: 15  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FXCQGGDFTRHNGT 72
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S               P+    +F I 
Sbjct: 73  GGKSIYGEKFEDEN--------FILKHTGPGILSX----------ANAGPNTNGSQFFIC 114
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
           T       LD K++VFG V +G ++V A          ER    N               
Sbjct: 115 TAK--TEWLDGKHVVFGKVKEGXNIVEA---------XERFGSRN--------------- 148
Query: 272 AIWNRPLKTVYISDCGELK 290
               +  K + I+DCG+L+
Sbjct: 149 ---GKTSKKITIADCGQLE 164

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
           +GR++IGL+G + P TV NF A+ +      Y+ +  H++    F + G   ++  D   
Sbjct: 29  VGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIK-DFMIQGGD-ITTGDGTG 86
Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT- 211
           G        +    +T     F LKH   G VS+              P     +F IT 
Sbjct: 87  G--------VSIYGETFPDENFKLKHYGIGWVSMA----------NAGPDTNGSQFFITL 128
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAI 240
           T P     LD K++VFG V+ G+ VV +I
Sbjct: 129 TKP---TWLDGKHVVFGKVIDGMTVVHSI 154

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 58/206 (28%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS----------LYRNTLVHKIFPGQFFLAGRQ 143
           P GR++  L+  + P T  NF+ +C+              Y++ L H++     F+    
Sbjct: 22  PAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKD--FMVQGG 79
Query: 144 GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHY 203
             S  + + GE                  +F +KH++  ++S+     D +         
Sbjct: 80  DFSEGNGRGGE--------SIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS------- 124
Query: 204 RNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIG 263
              +F ITT P   P LD  ++VFG V+ G +VV  I                       
Sbjct: 125 ---QFFITTKP--TPHLDGHHVVFGQVISGQEVVREIE---------------------- 157
Query: 264 DKRADTARAIWNRPLKTVYISDCGEL 289
           +++ D A    ++P   V I  CGEL
Sbjct: 158 NQKTDAA----SKPFAEVRILSCGEL 179

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 29/158 (18%)
Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSL-------YRNTLVHKIFPGQFFLAGRQGLSR 147
           +GR+ I L+  + P T  NF+  C+           Y+ +  H++    F + G   ++ 
Sbjct: 24  VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIK-DFMIQGGDFVNG 82
Query: 148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
             + +  +     +  P  D      F L+HS  G++S+  S           P     +
Sbjct: 83  DGTGVASI-----YRGPFAD----ENFKLRHSAPGLLSMANS----------GPSTNGCQ 123
Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
           F IT     C  LD K++VFG ++ GL V+  I ++PT
Sbjct: 124 FFITCSK--CDWLDGKHVVFGKIIDGLLVMRKIENVPT 159

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 58/206 (28%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS----------LYRNTLVHKIFPGQFFLAGRQ 143
           P GR++  L+  + P T  NF+ +C+              Y++ L H++     F+    
Sbjct: 22  PAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKD--FMVQGG 79
Query: 144 GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHY 203
             S  + + GE                  +F +KH++  ++S+     D +         
Sbjct: 80  DFSEGNGRGGE--------SIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS------- 124
Query: 204 RNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIG 263
              +F ITT P   P LD  ++VFG V+ G +VV  I                       
Sbjct: 125 ---QFFITTKP--TPHLDGHHVVFGQVISGQEVVREIE---------------------- 157
Query: 264 DKRADTARAIWNRPLKTVYISDCGEL 289
           +++ D A    ++P   V I  CGEL
Sbjct: 158 NQKTDAA----SKPFAEVRILSCGEL 179

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSLY--RNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           P GR+ + L   + P+T  NF+ +C+    +  + +  H+I P QF   G    +  +  
Sbjct: 24  PAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIP-QFMCQGGD-FTNHNGT 81
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+  S           P+    +F +T
Sbjct: 82  GGKSIYGKKFDDEN--------FILKHTGPGLLSMANS----------GPNTNGSQFFLT 123
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTY--KPSERI 252
                   LD K++VFG V +GLDV+  I +  +   KP +++
Sbjct: 124 CDK--TDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKV 164

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSLY--RNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           P GR+ + L   + P+T  NF+ +C+    +  + +  H+I P QF   G    +  +  
Sbjct: 16  PAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIP-QFMCQGGD-FTNHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S+  S           P+    +F +T
Sbjct: 74  GGKSIYGKKFDDEN--------FILKHTGPGLLSMANS----------GPNTNGSQFFLT 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTY--KPSERI 252
                   LD K++VFG V +GLDV+  I +  +   KP +++
Sbjct: 116 CDK--TDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKV 156

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 78/206 (37%), Gaps = 58/206 (28%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS----------LYRNTLVHKIFPGQFFLAGRQ 143
           P GR++  L+  + P T  NF+ +C+              Y++ L H++    F + G  
Sbjct: 39  PAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVK-DFMVQGGD 97
Query: 144 GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHY 203
             S  + + GE                  +F +KH+   ++S+     D +         
Sbjct: 98  -FSEGNGRGGE--------SIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGS------- 141
Query: 204 RNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIG 263
              +F ITT P   P LD  ++VFG V+ G +VV  I                       
Sbjct: 142 ---QFFITTKP--TPHLDGHHVVFGQVISGQEVVREIE---------------------- 174
Query: 264 DKRADTARAIWNRPLKTVYISDCGEL 289
           +++ D A    ++P   V I  CGEL
Sbjct: 175 NQKTDAA----SKPFAEVRILSCGEL 196

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 35/167 (20%)
Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSL-------YRNTLVHKIFPGQFFLAGRQGLSR 147
           LG+    L+ ++ P T  NF+  C+           Y+NT+ H++   +F + G   ++ 
Sbjct: 73  LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIK-EFMIQGGDFINH 131
Query: 148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
             S    ++          +      F +KH + G++S+  S           P+    +
Sbjct: 132 NGSGSLSIYG---------EKFDDENFDIKHDKEGLLSMANS----------GPNTNGCQ 172
Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQG-----LDVVAAIASIP-TYKP 248
           F ITT    C  LD KN+VFG ++       L  +  ++  P  YKP
Sbjct: 173 FFITTKK--CEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKP 217

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 28/183 (15%)
Query: 73  SLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCS--SRSLYRNTLVH 130
           S+   FF  E     + ++   +GR++  L+    P T  NF+ +C   +   YR +  H
Sbjct: 1   SMSQVFFDVE--YAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFH 58
Query: 131 KIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSE 190
           +I P  F + G    +R +   G       F   N        F  KH + G++S+    
Sbjct: 59  RIIP-NFMIQGGD-FTRGNGTGGRSIYGDKFADEN--------FSRKHDKKGILSMA--- 105
Query: 191 NDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVL--QGLDVVAAIASIPTYKP 248
                     P+    +F ITT       LD K++VFG V   +   VV  I ++ +   
Sbjct: 106 -------NAGPNTNGSQFFITT--AVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSG 156
Query: 249 SER 251
           S R
Sbjct: 157 SVR 159

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Query: 78  FFRPEG-TDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQ 136
           +++ +G T+    +    LG   + LY + +P T  NF  +C     Y NT+ H++ P  
Sbjct: 29  YYKMKGHTERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCE-MGFYDNTIFHRVIPNF 87
Query: 137 FFLAGRQGLSRRDSK--LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDD 194
               G    + +  K   GE            D +      LKH+  G++S+  S N   
Sbjct: 88  VIQGGDPTGTGKGGKSIYGEYFE---------DEINKE---LKHTGAGILSM--SNNG-- 131
Query: 195 PDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
                 P+  + +F IT  P   P LD K+ +F  V + +  +  IAS+ T
Sbjct: 132 ------PNTNSSQFFITLAP--LPHLDGKHTIFARVSKNMTCIENIASVQT 174

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSLY--RNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           P GR+   L   + P T  NF+ +C+    +  + +  H+I P QF   G    +  +  
Sbjct: 25  PAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIP-QFXCQGGD-FTNHNGT 82
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F+LKH+  G++S   S           P+    +F +T
Sbjct: 83  GGKSIYGKKFDDEN--------FILKHTGPGLLSXANS----------GPNTNGSQFFLT 124
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTY--KPSERI 252
                   LD K++VFG V +GLDV+  I +  +   KP +++
Sbjct: 125 CDK--TDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKV 165

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 41/165 (24%)
Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFL-------AGRQGLSR 147
           +G + I ++    P T  NF A+C+S + Y   + H+   G F +        GR G S 
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALCAS-NYYNGCIFHRNIKG-FMVQTGDPTGTGRGGNSI 66
Query: 148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
              K  + +                   LKH+  GVVS+  +           P+    +
Sbjct: 67  WGKKFEDEYSEY----------------LKHNVRGVVSMANN----------GPNTNGSQ 100
Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIP----TYKP 248
           F IT G  P   LD K  VFG V+ GL+ +  +  +P    TY+P
Sbjct: 101 FFITYGKQP--HLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRP 143

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 41/165 (24%)
Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFL-------AGRQGLSR 147
           +G + I ++    P T  NF A+C+S + Y   + H+   G F +        GR G S 
Sbjct: 15  VGDIKIEVFCERTPKTCENFLALCAS-NYYNGCIFHRNIKG-FMVQTGDPTGTGRGGNSI 72
Query: 148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
              K  + +                   LKH+  GVVS+  +           P+    +
Sbjct: 73  WGKKFEDEYSEY----------------LKHNVRGVVSMANN----------GPNTNGSQ 106
Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIP----TYKP 248
           F IT G  P   LD K  VFG V+ GL+ +  +  +P    TY+P
Sbjct: 107 FFITYGKQP--HLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRP 149

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 27/162 (16%)
Query: 96  GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGEL 155
           G L + L+  L P T  NF  +C  +  Y  T+ H+     F + G              
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLCK-KHYYDGTIFHRSIR-NFVIQGGDPTGTGTGGESYW 86
Query: 156 HPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG 215
             P        D  RPN   L H+  G++S+  S           P+    +F IT    
Sbjct: 87  GKPF------KDEFRPN---LSHTGRGILSMANS----------GPNSNRSQFFITFRS- 126
Query: 216 PCPQLDNKNIVFGTVLQGLDVVAAIASIP----TYKPSERIQ 253
            C  LD K+ +FG V+ G DV+ A+ ++     T +P E I+
Sbjct: 127 -CAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIR 167

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 27/167 (16%)
Query: 81  PEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA 140
           P+   P        +G +++ LY   AP T  NF A  + R  Y  T  H+I    F + 
Sbjct: 6   PDSWQPPNVYLETSMGIIVLELYWKHAPKTCKNF-AELARRGYYNGTKFHRIIK-DFMIQ 63
Query: 141 GRQ--GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVK 198
           G    G  R  + +        +     D L P+   LK +  G++++            
Sbjct: 64  GGDPTGTGRGGASI--------YGKQFEDELHPD---LKFTGAGILAMA----------N 102
Query: 199 LDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
             P     +F +T  P     LD K+ +FG V QG+ +V  +  + T
Sbjct: 103 AGPDTNGSQFFVTLAP--TQWLDGKHTIFGRVCQGIGMVNRVGMVET 147

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 27/167 (16%)
Query: 81  PEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA 140
           P+   P        +G +++ LY   AP T  NF A  + R  Y  T  H+I    F + 
Sbjct: 6   PDSWQPPNVYLETSMGIIVLELYWKHAPKTCKNF-AELARRGYYNGTKFHRIIK-DFMIQ 63
Query: 141 GRQ--GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVK 198
           G    G  R  + +        +     D L P+   LK +  G++++            
Sbjct: 64  GGDPTGTGRGGASI--------YGKQFEDELHPD---LKFTGAGILAMA----------N 102
Query: 199 LDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
             P     +F +T  P     LD K+ +FG V QG+ +V  +  + T
Sbjct: 103 AGPDTNGSQFFVTLAP--TQWLDGKHTIFGRVCQGIGMVNRVGMVET 147

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 27/167 (16%)
Query: 81  PEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA 140
           P+   P        +G +++ LY   AP T  NF A  + R  Y  T  H+I    F + 
Sbjct: 6   PDSWQPPNVYLETSMGIIVLELYWKHAPKTCKNF-AELARRGYYNGTKFHRIIK-DFMIQ 63
Query: 141 GRQ--GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVK 198
           G    G  R  + +        +     D L P+   LK +  G++++            
Sbjct: 64  GGDPTGTGRGGASI--------YGKQFEDELHPD---LKFTGAGILAMA----------N 102
Query: 199 LDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
             P     +F +T  P     LD K+ +FG V QG+ +V  +  + T
Sbjct: 103 AGPDTNGSQFFVTLAP--TQWLDGKHTIFGRVCQGIGMVNRVGMVET 147

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 20/151 (13%)
Query: 96  GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGEL 155
           G + + L    AP++V NF    +S   Y NT  H++ PG F + G     +   K  + 
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYVNS-GFYNNTTFHRVIPG-FMIQGGGFTEQMQQK--KP 69
Query: 156 HPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG 215
           +PP+     N          L+++RG  +++  + + D    +   +  +  FL      
Sbjct: 70  NPPIKNEADNG---------LRNTRG-TIAMARTADKDSATSQFFINVADNAFL------ 113
Query: 216 PCPQLDNKNIVFGTVLQGLDVVAAIASIPTY 246
              Q D    VFG V++G+DV   I+ +PT+
Sbjct: 114 DHGQRDFGYAVFGKVVKGMDVADKISQVPTH 144

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 20/151 (13%)
Query: 96  GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGEL 155
           G + + L    AP++V NF    +S   Y NT  H++ PG F + G     +   K  + 
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYVNS-GFYNNTTFHRVIPG-FMIQGGGFTEQMQQK--KP 69
Query: 156 HPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG 215
           +PP+     N          L+++RG  +++  + + D    +   +  +  FL      
Sbjct: 70  NPPIKNEADNG---------LRNTRG-TIAMARTADKDSATSQFFINVADNAFL------ 113
Query: 216 PCPQLDNKNIVFGTVLQGLDVVAAIASIPTY 246
              Q D    VFG V++G+DV   I+ +PT+
Sbjct: 114 DHGQRDFGYAVFGKVVKGMDVADKISQVPTH 144

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
           +G + I L+      TV NF ++ S    Y N + H++   + F+  + G    D   GE
Sbjct: 14  MGDIHISLFYKECKKTVQNF-SVHSINGYYNNCIFHRVI--KHFMV-QTGDPSGDGTGGE 69
Query: 155 LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP 214
                +F     D L        HS+  +VS+              P+    +F ITT P
Sbjct: 70  SIWGNEFEDEFFDHLN-------HSKPFMVSM----------ANCGPNTNGSQFFITTVP 112
Query: 215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPT---YKPSERIQKYN 256
             CP LD K+ VFG V QG  +V  I  + T    KP E I+  N
Sbjct: 113 --CPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	306
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	8e-22
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	2e-20
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	3e-19
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	7e-19
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-18
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	6e-18
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-16
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	3e-16
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	4e-16
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	7e-16
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	7e-16
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	1e-15
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-15
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-15
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	2e-15
2b71_A	196	Cyclophilin-like protein; structural genomics, str	2e-15
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	2e-15
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-15
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	2e-15
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	2e-15
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	2e-15
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	3e-15
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	3e-15
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	4e-15
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	5e-15
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	2e-14
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	4e-14
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	5e-14
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	6e-14
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	1e-12
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	3e-09
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	4e-09
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	3e-07
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	1e-05
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	5e-05

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 93.2 bits (232), Expect = 8e-22
 Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 63/209 (30%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMC---------SSRSL-YRNTLVHKIFPGQFFLAGRQ 143
            +GR+++ L+  + P T  NF+A+C         + + L ++    H+I    F +   Q
Sbjct: 28  RVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKK-FMI---Q 83

Query: 144 G--LSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDP 201
           G   S ++   GE      F   N        F  KH + G++S+    N          
Sbjct: 84  GGDFSNQNGTGGESIYGEKFEDEN--------FHYKHDKEGLLSMA---NAG-------S 125

Query: 202 HYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAF 261
           +    +F ITT P   P LD K++VFG V++G+ V   + ++                  
Sbjct: 126 NTNGSQFFITTVP--TPHLDGKHVVFGQVIKGMGVAKILENVEVKG-------------- 169

Query: 262 IGDKRADTARAIWNRPLKTVYISDCGELK 290
                         +P K   I++CGELK
Sbjct: 170 -------------EKPAKLCVIAECGELK 185

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score = 87.1 bits (216), Expect = 2e-20
 Identities = 37/241 (15%), Positives = 60/241 (24%), Gaps = 76/241 (31%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMC-------------------SSRSLYRNTLVHKIFP 134
            +GRL I L+    P  V NF  +                         Y     H +  
Sbjct: 27  IIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLH 86

Query: 135 GQFFLAGRQG--LSRRD-----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLC 187
                       +   +     +   +       +  +        +   H   G++SL 
Sbjct: 87  N--NYI--VSGDIYNSNGSSAGTVYCDEPI--PPVFGD--------YFYPHESKGLLSLV 132

Query: 188 LSENDDDPDVKLDPHYRNVEFLITTGPG----PCPQLDNKNIVFGTVLQGLDVVAAIASI 243
              ++          Y +  F+IT           +LD   +V G V  GLDV+  I S+
Sbjct: 133 PYTDESGNR------YYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSM 186

Query: 244 PTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPNATTKPSLSP 303
                                           R   T  I  CG       A  K  ++ 
Sbjct: 187 IK---PYA-----------------------GRKYPTFSIGKCGAYLDSSQAQRKRPVNV 220

Query: 304 T 304
            
Sbjct: 221 N 221

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score = 82.6 bits (205), Expect = 3e-19
 Identities = 50/216 (23%), Positives = 78/216 (36%), Gaps = 72/216 (33%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMC---------SSRSL-YRNTLVHKIFPGQFFLAGRQ 143
           P+GR++  L+  + P T  NF  +C         + + L Y+ +  H++     F+   Q
Sbjct: 32  PVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN--FMI--Q 87

Query: 144 G--LSRRD-----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPD 196
           G   S  +     S  G       F   N        F+LKH R  ++S+          
Sbjct: 88  GGDFSEGNGKGGESIYGG-----YFKDEN--------FILKHDRAFLLSMANR------- 127

Query: 197 VKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYN 256
                H    +F ITT P   P LD  ++VFG V+ G +V+  I ++ T           
Sbjct: 128 ---GKHTNGSQFFITTKP--APHLDGVHVVFGLVISGFEVIEQIENLKTDA--------- 173

Query: 257 ELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK 292
                   +           P   V + DCG L  K
Sbjct: 174 ------ASR-----------PYADVRVIDCGVLATK 192

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score = 81.4 bits (202), Expect = 7e-19
 Identities = 55/213 (25%), Positives = 81/213 (38%), Gaps = 72/213 (33%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMC---------SSRSL-YRNTLVHKIFPGQFFLAGRQ 143
             GR+++ LY  +AP T +NF  +C         S + L Y+ +  H++     F+   Q
Sbjct: 19  LAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKN--FMI--Q 74

Query: 144 G--LSRRD-----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPD 196
           G   ++ D     S  G       F            F++KH    VVS+          
Sbjct: 75  GGDFTKGDGTGGESIYGG-----MFDDEE--------FVMKHDEPFVVSMANK------- 114

Query: 197 VKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYN 256
               P+    +F ITT P   P L+N ++VFG V+ G +VV  I  + T           
Sbjct: 115 ---GPNTNGSQFFITTTP--APHLNNIHVVFGKVVSGQEVVTKIEYLKTNSK-------- 161

Query: 257 ELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289
                             NRPL  V I +CGEL
Sbjct: 162 ------------------NRPLADVVILNCGEL 176

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score = 81.0 bits (201), Expect = 1e-18
 Identities = 49/213 (23%), Positives = 76/213 (35%), Gaps = 72/213 (33%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMC---------SSRSL-YRNTLVHKIFPGQFFLAGRQ 143
           P GR++  L+  + P T  NF+ +C         + + L Y++ L H++     F+   Q
Sbjct: 22  PAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKD--FMV--Q 77

Query: 144 G--LSRRD-----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPD 196
           G   S  +     S  G       F   +        F +KH++  ++S+          
Sbjct: 78  GGDFSEGNGRGGESIYGG-----FFEDES--------FAVKHNKEFLLSMANR------- 117

Query: 197 VKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYN 256
                     +F ITT P   P LD  ++VFG V+ G +VV  I +  T           
Sbjct: 118 ---GKDTNGSQFFITTKP--TPHLDGHHVVFGQVISGQEVVREIENQKTDA--------- 163

Query: 257 ELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289
                   K           P   V I  CGEL
Sbjct: 164 ------ASK-----------PFAEVRILSCGEL 179

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score = 78.7 bits (195), Expect = 6e-18
 Identities = 50/210 (23%), Positives = 75/210 (35%), Gaps = 69/210 (32%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMC------SSRSL-YRNTLVHKIFPGQFFLAGRQG-- 144
            +GR+ I L+  + P T  NF+  C          + Y+ +  H++     F+   QG  
Sbjct: 23  EVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKD--FMI--QGGD 78

Query: 145 LSRRD-----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKL 199
               D     S          F   N        F L+HS  G++S+  S          
Sbjct: 79  FVNGDGTGVASIYRG-----PFADEN--------FKLRHSAPGLLSMANS---------- 115

Query: 200 DPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELA 259
            P     +F IT     C  LD K++VFG ++ GL V+  I ++PT              
Sbjct: 116 GPSTNGCQFFITCSK--CDWLDGKHVVFGKIIDGLLVMRKIENVPTGPN----------- 162

Query: 260 AFIGDKRADTARAIWNRPLKTVYISDCGEL 289
                          N+P   V IS CGE+
Sbjct: 163 ---------------NKPKLPVVISQCGEM 177

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score = 75.2 bits (186), Expect = 1e-16
 Identities = 53/213 (24%), Positives = 82/213 (38%), Gaps = 72/213 (33%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMC---------SSRSLYRNTLVHKIFPGQFFLAGRQG 144
             GR+++ LY  + P T  NF+A+C              ++ +  H+I P   F+   QG
Sbjct: 16  ASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPN--FMI--QG 71

Query: 145 --LSRRD-----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDV 197
              +R +     S  GE      F   N        F  KH+  GV+S+           
Sbjct: 72  GDFTRGNGTGGESIYGE-----KFPDEN--------FKEKHTGPGVLSM----------A 108

Query: 198 KLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNE 257
              P+    +F + T       LD K++VFG V++GLDVV A+ S  +            
Sbjct: 109 NAGPNTNGSQFFLCTVK--TEWLDGKHVVFGRVVEGLDVVKAVESNGSQS---------- 156

Query: 258 LAAFIGDKRADTARAIWNRPLKTVYISDCGELK 290
                             +P+K   I+DCG+LK
Sbjct: 157 -----------------GKPVKDCMIADCGQLK 172

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score = 74.1 bits (183), Expect = 3e-16
 Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 71/211 (33%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMC-------SSRSL-YRNTLVHKIFPGQFFLAGRQG- 144
             GR+I  L+  + P T  NF+A+C         ++L Y+N++ H+I P   F+   QG 
Sbjct: 16  NAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQ--FMC--QGG 71

Query: 145 -LSRRD-----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVK 198
            ++  +     S  G       F   N        F +KH + G++S+            
Sbjct: 72  DITNGNGSGGESIYGR-----SFTDEN--------FNMKHDQPGLLSM----------AN 108

Query: 199 LDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNEL 258
             P+  + +F IT  P  CP LD K++VFG V++G++VV  +                  
Sbjct: 109 AGPNTNSSQFFITLVP--CPWLDGKHVVFGKVIEGMNVVREMEKEGAKS----------- 155

Query: 259 AAFIGDKRADTARAIWNRPLKTVYISDCGEL 289
                               ++V I+DCGEL
Sbjct: 156 ----------------GYVKRSVVITDCGEL 170

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score = 73.4 bits (181), Expect = 4e-16
 Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 44/170 (25%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA--------GRQGLS 146
           +G + I L+      TV NF     +   Y N + H++     F+         G  G S
Sbjct: 14  MGDIHISLFYKECKKTVQNFSVHSING-YYNNCIFHRVIKH--FMVQTGDPSGDGTGGES 70

Query: 147 RRDSKLG-ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
              ++   E    L                  HS+  +VS+              P+   
Sbjct: 71  IWGNEFEDEFFDHL-----------------NHSKPFMVSMANC----------GPNTNG 103

Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT---YKPSERI 252
            +F ITT P  CP LD K+ VFG V QG  +V  I  + T    KP E I
Sbjct: 104 SQFFITTVP--CPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDI 151

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score = 73.5 bits (181), Expect = 7e-16
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 42/171 (24%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA--------GRQGLS 146
            G L   L+    P    NF A+ +S   Y+NT+ HK   G  F+         G+ G S
Sbjct: 25  YGDLKFELFCSQCPKACKNFLALSAS-GYYKNTIFHKNIKG--FIIQGGDPTGTGKGGES 81

Query: 147 RRDSKLG-ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
                   E++P L                 K+ R G++S+        P+        N
Sbjct: 82  IYGRYFDDEIYPEL-----------------KYDRRGILSMASKGASKKPNT-------N 117

Query: 206 V-EFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT---YKPSERI 252
             +F IT      PQL+ + ++FG ++ G + +  + + P+   +KP + I
Sbjct: 118 GSQFFITYSS--LPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEI 166

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score = 73.4 bits (181), Expect = 7e-16
 Identities = 61/215 (28%), Positives = 87/215 (40%), Gaps = 65/215 (30%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQG--LSRRD 149
            +GR+I GL+G   P TV NF A+ +      Y+N+  H++     F+   QG   +R D
Sbjct: 28  DVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKD--FMI--QGGDFTRGD 83

Query: 150 -----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
                S  GE      F   N        F LKH   G VS+                  
Sbjct: 84  GTGGKSIYGE-----RFPDEN--------FKLKHYGPGWVSM----------ANAGKDTN 120

Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGD 264
             +F ITT       LD K++VFG VL+G++VV  + S  T                   
Sbjct: 121 GSQFFITTVK--TAWLDGKHVVFGKVLEGMEVVRKVESTKTDSR---------------- 162

Query: 265 KRADTARAIWNRPLKTVYISDCGELKL-KPNATTK 298
                     ++PLK V I+DCG++++ KP A  K
Sbjct: 163 ----------DKPLKDVIIADCGKIEVEKPFAIAK 187

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 39/174 (22%), Positives = 60/174 (34%), Gaps = 40/174 (22%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA-------------G 141
            G L I L+  +AP    +F  +C+ +  + +T+ H+      F+               
Sbjct: 15  QGSLNIELHADMAPRACDSFLRLCAVK-YFDDTIFHRCIRN--FMIQGGRAELRQPSKKK 71

Query: 142 RQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDP 201
               S R         P +      D        L H   GV+S+               
Sbjct: 72  EVQQSPRSISGFPGGAPFE------DEFDNR---LVHQGIGVLSM----------ANDGK 112

Query: 202 HYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT---YKPSERI 252
           H    EF IT     C  L+NK+ +FG V+ GLDV+     + T    KP +  
Sbjct: 113 HSNLSEFFITFKS--CEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPP 164

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score = 72.6 bits (179), Expect = 1e-15
 Identities = 50/207 (24%), Positives = 81/207 (39%), Gaps = 67/207 (32%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSS-RSL-YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+   L+    P T  NF+A+ +  +   Y+ +  H+I PG  F+   QG       
Sbjct: 35  PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMC--QG------- 83

Query: 152 LGELHPPLDFLPPN-T-------DTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHY 203
            G      DF   N T       +      F+LKH+  G++S+    N         P+ 
Sbjct: 84  -G------DFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSM---ANAG-------PNT 126

Query: 204 RNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIG 263
              +F I T       LD K++VFG V +G+++V A+    +                  
Sbjct: 127 NGSQFFICTAK--TEWLDGKHVVFGKVKEGMNIVEAMERFGSRN---------------- 168

Query: 264 DKRADTARAIWNRPLKTVYISDCGELK 290
                       +  K + I+DCG+L+
Sbjct: 169 -----------GKTSKKITIADCGQLE 184

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score = 73.6 bits (181), Expect = 1e-15
 Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 72/213 (33%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMC------SSRSL-YRNTLVHKIFPGQFFLAGRQGLS 146
            LG+    L+ ++ P T  NF+  C      ++  + Y+NT+ H++     F+   QG  
Sbjct: 72  FLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKE--FMI--QG-- 125

Query: 147 RRDSKLGELHPPLDFLPPN-T-------DTLRPNAFLLKHSRGGVVSLCLSENDDDPDVK 198
                 G      DF+  N +       +      F +KH + G++S+  S         
Sbjct: 126 ------G------DFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSG-------- 165

Query: 199 LDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVL--QGLDVVAAIASIPTYKPSERIQKYN 256
             P+    +F ITT    C  LD KN+VFG ++    L ++  I ++             
Sbjct: 166 --PNTNGCQFFITTKK--CEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYI------- 214

Query: 257 ELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289
                              +P   + + +CGEL
Sbjct: 215 ------------------YKPKIPINVVECGEL 229

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 41/179 (22%), Positives = 66/179 (36%), Gaps = 46/179 (25%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA--------GRQGLS 146
           +G +++ LY   AP T  NF  +      Y  T  H+I     F+         GR G S
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELARRG-YYNGTKFHRIIKD--FMIQGGDPTGTGRGGAS 76

Query: 147 RRDSKLG-ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
               +   ELHP L                 K +  G++++  +           P    
Sbjct: 77  IYGKQFEDELHPDL-----------------KFTGAGILAMANAG----------PDTNG 109

Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT---YKPSE--RIQKYNELA 259
            +F +T  P     LD K+ +FG V QG+ +V  +  + T    +P +  +I K     
Sbjct: 110 SQFFVTLAP--TQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSG 166

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 44/170 (25%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA--------GRQGLS 146
           LG   + LY + +P T  NF  +C     Y NT+ H++ P   F+         G+ G S
Sbjct: 47  LGDFEVELYWYHSPKTCLNFYTLCEM-GFYDNTIFHRVIPN--FVIQGGDPTGTGKGGKS 103

Query: 147 RRDSKLG-ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
                   E++  L                 KH+  G++S+  +           P+  +
Sbjct: 104 IYGEYFEDEINKEL-----------------KHTGAGILSMSNN----------GPNTNS 136

Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT---YKPSERI 252
            +F IT  P   P LD K+ +F  V + +  +  IAS+ T    KP   +
Sbjct: 137 SQFFITLAP--LPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDL 184

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 65/205 (31%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQG--LSRRD 149
           P GR++  LY    P T  NF+ + + +    Y++++ H++ P   F+   QG   +R +
Sbjct: 15  PEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQ--FML--QGGDFTRHN 70

Query: 150 -----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
                S  GE      F   N        F +KH++ G++S+  +            +  
Sbjct: 71  GTGGKSIYGE-----KFADEN--------FQVKHTKPGLLSMANAG----------ANTN 107

Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGD 264
             +F ITT P     LD K++VFG V++GLD+V  +    +                   
Sbjct: 108 GSQFFITTVP--TSWLDGKHVVFGEVIEGLDIVRKVEGKGSAS----------------- 148

Query: 265 KRADTARAIWNRPLKTVYISDCGEL 289
                      +   T+ I+DCG +
Sbjct: 149 ----------GKTNATIKITDCGTV 163

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 67/206 (32%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSS-RSL-YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+++ L   + P T  NF+A+C+  +   Y+ +  H++ P   F+   Q        
Sbjct: 16  PLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPS--FMC--QA------- 64

Query: 152 LGELHPPLDFLPPN-T-------DTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHY 203
            G      DF   N T              F LKH   GV+S+              P+ 
Sbjct: 65  -G------DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSM----------ANAGPNT 107

Query: 204 RNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIG 263
              +F I T       LD K++VFG V++G+DVV  I S  +                  
Sbjct: 108 NGSQFFICTIK--TDWLDGKHVVFGHVIEGMDVVKKIESFGSKS---------------- 149

Query: 264 DKRADTARAIWNRPLKTVYISDCGEL 289
                       R  K + I+DCG+L
Sbjct: 150 -----------GRTSKKIVITDCGQL 164

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score = 71.8 bits (177), Expect = 2e-15
 Identities = 52/205 (25%), Positives = 77/205 (37%), Gaps = 65/205 (31%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSS-RSL-YRNTLVHKIFPGQFFLAGRQG--LSRRD 149
             GR+++ L   + P T  NF+A+C+  R   Y N   H++ P   F+   QG    + D
Sbjct: 23  DAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQ--FMC--QGGDFVKGD 78

Query: 150 -----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
                S  G       F   N        F L+H   GV+S+  S           P+  
Sbjct: 79  GTGGKSIYGR-----KFDDEN--------FQLRHEGFGVLSMANSG----------PNTN 115

Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGD 264
             +F I T    C  LD K++VFG V+ G +VV  + S+ +                   
Sbjct: 116 GSQFFICTTK--CDWLDGKHVVFGRVVDGQNVVKKMESVGSKS----------------- 156

Query: 265 KRADTARAIWNRPLKTVYISDCGEL 289
                      +  + V IS CGEL
Sbjct: 157 ----------GKVKEPVIISRCGEL 171

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 41/171 (23%), Positives = 62/171 (36%), Gaps = 45/171 (26%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA--------GRQGLS 146
           +G +   L+    P TV NF     +   Y     H+I  G  F+         G  G S
Sbjct: 30  MGDIHTKLFPVECPKTVENFCVHSRNG-YYNGHTFHRIIKG--FMIQTGDPTGTGMGGES 86

Query: 147 RRDSKLG-ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
               +   E H  L                 +H R   +S+  +            +   
Sbjct: 87  IWGGEFEDEFHSTL-----------------RHDRPYTLSMANA----------GSNTNG 119

Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT----YKPSERI 252
            +F IT  P   P LDNK+ VFG V +G++VV  I+++       KP E +
Sbjct: 120 SQFFITVVP--TPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDV 168

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 44/170 (25%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA--------GRQGLS 146
           +G +++ LY   AP T  NF  +      Y  T  H+I     F+         GR G S
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELARRG-YYNGTKFHRIIKD--FMIQGGDPTGTGRGGAS 76

Query: 147 RRDSKLG-ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
               +   ELHP L                 K +  G++++  +           P    
Sbjct: 77  IYGKQFEDELHPDL-----------------KFTGAGILAMANAG----------PDTNG 109

Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT---YKPSERI 252
            +F +T  P     LD K+ +FG V QG+ +V  +  + T    +P + +
Sbjct: 110 SQFFVTLAP--TQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDV 157

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score = 71.4 bits (176), Expect = 3e-15
 Identities = 58/205 (28%), Positives = 82/205 (40%), Gaps = 65/205 (31%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQG--LSRRD 149
           PLGR+ IGL+G  AP+T  NF+ +C+      Y++++ H++     F+   QG   +  D
Sbjct: 24  PLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQN--FMI--QGGDFTNFD 79

Query: 150 -----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
                S  GE      F   N          +KH  G      LS  +  P+        
Sbjct: 80  GTGGKSIYGE-----KFADEN--------LNVKHFVG-----ALSMANAGPNTN------ 115

Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGD 264
             +F ITT P   P LD +++VFG VL G+DVV  I    T                   
Sbjct: 116 GSQFFITTAP--TPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSH---------------- 157

Query: 265 KRADTARAIWNRPLKTVYISDCGEL 289
                     +RP+K V I   GEL
Sbjct: 158 ----------DRPVKPVKIVASGEL 172

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 51/206 (24%), Positives = 78/206 (37%), Gaps = 63/206 (30%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQG--LSRRD 149
            LGR+++ L   + P T  NF+ +C       Y+ +  H+I PG  F+   QG   +  +
Sbjct: 40  SLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPG--FMV--QGGDYTAHN 95

Query: 150 -----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
                S  GE      F   N        F LKH++ G++S+               H  
Sbjct: 96  GTGGRSIYGE-----KFPDEN--------FELKHTKEGILSM----------ANCGAHTN 132

Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGD 264
             +F IT G      LD K++VFG V++G+DVV  IA   +                   
Sbjct: 133 GSQFFITLGK--TQWLDEKHVVFGEVVEGMDVVHKIAKYGS------------------- 171

Query: 265 KRADTARAIWNRPLKTVYISDCGELK 290
                  +   +    + I DCG L 
Sbjct: 172 ------ESGQVKKGYRIEIRDCGVLG 191

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score = 70.6 bits (174), Expect = 4e-15
 Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 65/205 (31%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSS-RSL-YRNTLVHKIFPGQFFLAGRQG--LSRRD 149
           P GR+ + L   + P+T  NF+ +C+  +   ++ +  H+I P   F+   QG   +  +
Sbjct: 24  PAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQ--FMC--QGGDFTNHN 79

Query: 150 -----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
                S  G+      F   N        F+LKH+  G++S+  S           P+  
Sbjct: 80  GTGGKSIYGK-----KFDDEN--------FILKHTGPGLLSMANSG----------PNTN 116

Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGD 264
             +F +T        LD K++VFG V +GLDV+  I +  +                   
Sbjct: 117 GSQFFLTCDK--TDWLDGKHVVFGEVTEGLDVLRQIEAQGSKD----------------- 157

Query: 265 KRADTARAIWNRPLKTVYISDCGEL 289
                      +P + V I+DCGE 
Sbjct: 158 ----------GKPKQKVIIADCGEY 172

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score = 70.3 bits (173), Expect = 5e-15
 Identities = 42/170 (24%), Positives = 64/170 (37%), Gaps = 49/170 (28%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA--------GRQGLS 146
           +G + I ++    P T  NF A+C+  + Y   + H+   G  F+         GR G  
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALCA-SNYYNGCIFHRNIKG--FMVQTGDPTGTGRGG-- 63

Query: 147 RRDSKLG-----ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDP 201
             +S  G     E    L                 KH+  GVVS+              P
Sbjct: 64  --NSIWGKKFEDEYSEYL-----------------KHNVRGVVSM----------ANNGP 94

Query: 202 HYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSER 251
           +    +F IT G    P LD K  VFG V+ GL+ +  +  +P  + + R
Sbjct: 95  NTNGSQFFITYGK--QPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYR 142

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 47/207 (22%), Positives = 74/207 (35%), Gaps = 65/207 (31%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQG--LSRRD 149
            +GR++  L+    P T  NF+ +C   +   YR +  H+I P   F+   QG   +R +
Sbjct: 20  KVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPN--FMI--QGGDFTRGN 75

Query: 150 -----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
                S  G+      F   N        F  KH + G++S+              P+  
Sbjct: 76  GTGGRSIYGD-----KFADEN--------FSRKHDKKGILSM----------ANAGPNTN 112

Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVL--QGLDVVAAIASIPTYKPSERIQKYNELAAFI 262
             +F ITT       LD K++VFG V   +   VV  I ++ +                 
Sbjct: 113 GSQFFITTAV--TSWLDGKHVVFGEVADEKSYSVVKEIEALGS----------------- 153

Query: 263 GDKRADTARAIWNRPLKTVYISDCGEL 289
                    +   R      I +CGEL
Sbjct: 154 --------SSGSVRSNTRPKIVNCGEL 172

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 52/210 (24%), Positives = 77/210 (36%), Gaps = 72/210 (34%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMC---------SSRSLYRNTLVHKIFPGQFFLAGRQG 144
           P GR+ + L+    PIT  NF+A+C              Y  +  H+I P   F+   QG
Sbjct: 32  PAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQ--FMI--QG 87

Query: 145 --LSRRD-----SKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDV 197
              +R D     S  G       F   N        F+  H    ++S+           
Sbjct: 88  GDFTRGDGTGGESIYGS-----KFRDEN--------FVYTHDAPFLLSM----------A 124

Query: 198 KLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNE 257
              P+    +F ITT P  CP LD K++VFG VL+G++VV +I    +            
Sbjct: 125 NAGPNTNGSQFFITTVP--CPWLDGKHVVFGKVLEGMEVVKSIEKCGSQN---------- 172

Query: 258 LAAFIGDKRADTARAIWNRPLKTVYISDCG 287
                             +P K+V I+  G
Sbjct: 173 -----------------GKPTKSVCITASG 185

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score = 68.5 bits (168), Expect = 5e-14
 Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 41/166 (24%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA--------GRQGLS 146
            G L + L+  L P T  NF  +C     Y  T+ H+      F+         G  G S
Sbjct: 28  KGDLNLELHCDLTPKTCENFIRLCKKH-YYDGTIFHRSIRN--FVIQGGDPTGTGTGGES 84

Query: 147 RRDSKLG-ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
                   E  P L                  H+  G++S+              P+   
Sbjct: 85  YWGKPFKDEFRPNL-----------------SHTGRGILSM----------ANSGPNSNR 117

Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSER 251
            +F IT     C  LD K+ +FG V+ G DV+ A+ ++ +   ++R
Sbjct: 118 SQFFITFRS--CAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDR 161

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score = 69.0 bits (169), Expect = 6e-14
 Identities = 34/179 (18%), Positives = 52/179 (29%), Gaps = 45/179 (25%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA--------GRQGLS 146
           LG L + L+    P+   NF  +C     Y NT+ H++     F+         GR G  
Sbjct: 30  LGDLDVELWARECPLACRNFVQLCLEG-YYVNTIFHRVVKD--FIVQGGDPTGTGRGGAD 86

Query: 147 RRDSKLG-----ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDP 201
              +  G     E HP L                 K    G+V +             + 
Sbjct: 87  T--TFDGKPFDVETHPRL-----------------KFRYRGLVGVANLGRSSKDAENDER 127

Query: 202 HYRNV----EFLITTGPGPCPQLDNKNIVFGTVL-QGLDVVAAIASIPT---YKPSERI 252
                    +F IT        L+N   +FG V    L  +     +      +P    
Sbjct: 128 GRSLGTNGNQFFITLAR--ADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPP 184

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 45/171 (26%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA--------GRQGLS 146
            G + I L+   AP    NF  +C     Y NT+ H++ PG  F+         G  G S
Sbjct: 33  AGDIDIELWSKEAPKACRNFIQLCLEA-YYDNTIFHRVVPG--FIVQGGDPTGTGSGGES 89

Query: 147 RRDSKLG-ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
              +    E H  L                 + +R G+V++               H   
Sbjct: 90  IYGAPFKDEFHSRL-----------------RFNRRGLVAM----------ANAGSHDNG 122

Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVL-QGLDVVAAIASIPT---YKPSERI 252
            +F  T G     +L+NK+ +FG V    +  +  ++ +      +P    
Sbjct: 123 SQFFFTLGR--ADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDDERPHNPH 171

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 64/187 (34%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMC--------------SSRSLYRNTLVHKIFPGQFFL- 139
            G + I L+G+ AP TV+NF  +                S   Y   + H++  G  F+ 
Sbjct: 32  RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQG--FMI 89

Query: 140 ---------AGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSE 190
                     G  G    D    E HP L                 +  +  ++++  + 
Sbjct: 90  QGGDPTGTGRGGPGYKFAD----EFHPEL-----------------QFDKPYLLAMANA- 127

Query: 191 NDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVL--QGLDVVAAIASIPT--- 245
                     P     +F IT G    P L+ ++ +FG V+  +   VV AI+   T   
Sbjct: 128 ---------GPGTNGSQFFITVGK--TPHLNRRHTIFGEVIDAESQRVVEAISKTATDGN 176

Query: 246 YKPSERI 252
            +P++ +
Sbjct: 177 DRPTDPV 183

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score = 56.2 bits (135), Expect = 4e-09
 Identities = 26/166 (15%), Positives = 47/166 (28%), Gaps = 30/166 (18%)

Query: 96  GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKI-----------FPGQFFLAGRQG 144
               I L G+ AP+T  NF  +      Y    + +             P + F+     
Sbjct: 188 CVFRIVLDGYNAPVTAGNFVDLVER-HFYDGMEIQRSDGFVVQTGDPEGPAEGFIDPSTE 246

Query: 145 LSRR----DSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLD 200
            +R         GE  P            +    +  ++ G  +++   E +        
Sbjct: 247 KTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFG-TMAMAREEFE-------- 297

Query: 201 PHYRNVEFLITT-----GPGPCPQLDNKNIVFGTVLQGLDVVAAIA 241
               + +           P     LD +  VFG V    D +A + 
Sbjct: 298 NDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK 343

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 44/163 (26%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
            G + + L    AP++V NF    +S   Y NT  H++ PG  F+   QG        G 
Sbjct: 13  AGNIELELDKQKAPVSVQNFVDYVNSGF-YNNTTFHRVIPG--FMI--QG--------G- 58

Query: 155 LHPPLDFLPPNTDTLRPNAFL-------LKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
                 F        +PN  +       L+++RG  +++  +          D      +
Sbjct: 59  -----GF-TEQMQQKKPNPPIKNEADNGLRNTRG-TIAMARTA---------DKDSATSQ 102

Query: 208 FLITTGPGPCPQLDNKNI-----VFGTVLQGLDVVAAIASIPT 245
           F I         LD+        VFG V++G+DV   I+ +PT
Sbjct: 103 FFINVADNA--FLDHGQRDFGYAVFGKVVKGMDVADKISQVPT 143

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 45/165 (27%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQF------FLAGRQGLSRR 148
            G ++I  +   AP TV NF   C     Y NT+ H++  G F      F  G +  + +
Sbjct: 8   HGDIVIKTFDDKAPETVKNFLDYCREGF-YNNTIFHRVING-FMIQGGGFEPGMKQKATK 65

Query: 149 DSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEF 208
           +    E +  L                 K++RG   +L ++           PH    +F
Sbjct: 66  EPIKNEANNGL-----------------KNTRG---TLAMARTQA-------PHSATAQF 98

Query: 209 LITTGPGPCPQLDNKNI--------VFGTVLQGLDVVAAIASIPT 245
            I         L+            VF  V+ G+D V  I  + T
Sbjct: 99  FINVVDND--FLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVAT 141

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 45/165 (27%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQF------FLAGRQGLSRR 148
            G + + L    AP TV NF         Y  T+ H++  G F      F  G +     
Sbjct: 12  HGVIKLELDEAKAPKTVENFLNYVKKGH-YDGTIFHRVING-FMIQGGGFEPGLKQKPTD 69

Query: 149 DSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEF 208
                E +  L                 K+      ++ ++  +D       PH    +F
Sbjct: 70  APIANEANNGL-----------------KNDTY---TIAMARTND-------PHSATAQF 102

Query: 209 LITTGPGPCPQLDNKNI--------VFGTVLQGLDVVAAIASIPT 245
            I         L++ +         VFG V++G D+V  I ++ T
Sbjct: 103 FINVNDNE--FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKT 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	306
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3kop_A	188	Uncharacterized protein; protein with A cyclophili	90.55

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=8.8e-51  Score=355.37  Aligned_cols=163  Identities=28%  Similarity=0.531  Sum_probs=150.1

Q ss_pred             CCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc----------CccccCceeEee
Q 021845           63 TITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS----------RSLYRNTLVHKI  132 (306)
Q Consensus        63 ~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~----------~~~Y~gt~FhRV  132 (306)
                      ..+++|||||++                ++|++|+|+||||.+.||+||+||++||++          .++|+|+.||||
T Consensus         7 ~~~~~vf~di~i----------------~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRv   70 (179)
T 2wfi_A            7 VQRPRCFFDIAI----------------NNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV   70 (179)
T ss_dssp             -CCCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEE
T ss_pred             CCCCeEEEEEEE----------------CCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEE
Confidence            358899999999                899999999999999999999999999972          268999999999


Q ss_pred             cCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEc
Q 021845          133 FPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT  212 (306)
Q Consensus       133 i~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl  212 (306)
                      +++||||+||+  ..+++.+|.+++        +..|+||++.++|+++|+|||||.          +||+|+||||||+
T Consensus        71 i~~f~iQgGd~--~~~~g~gg~si~--------g~~f~dE~~~~~h~~~G~lsMAn~----------gp~tngSQFfIt~  130 (179)
T 2wfi_A           71 VKDFMVQGGDF--SEGNGRGGESIY--------GGFFEDESFAVKHNKEFLLSMANR----------GKDTNGSQFFITT  130 (179)
T ss_dssp             ETTTEEEECCT--TTSSSSCCCCTT--------SSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEES
T ss_pred             ECCCEEEcccc--cCCCCCCCCccc--------CCcccccccCcCcCCCeEEEEEeC----------CCCCcceEEEEEc
Confidence            99999999997  457788888876        466899999999999999999998          7999999999999


Q ss_pred             CCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       213 ~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      .+  ++|||++|+|||||++|||||++|++++++.                          +++|.++|+|.+||+|
T Consensus       131 ~~--~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~--------------------------~~~P~~~v~I~~~G~l  179 (179)
T 2wfi_A          131 KP--TPHLDGHHVVFGQVISGQEVVREIENQKTDA--------------------------ASKPFAEVRILSCGEL  179 (179)
T ss_dssp             SC--CGGGTTTSCEEEEEEECHHHHHHHHTCCBCT--------------------------TSCBSSCEEEEEEEEC
T ss_pred             CC--CcccCCCeeEEEEEeCCHHHHHHHHcCCCCC--------------------------CCCCCCCeEEEeCeeC
Confidence            98  9999999999999999999999999999874                          5899999999999986

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=1.2e-50  Score=352.74  Aligned_cols=165  Identities=27%  Similarity=0.543  Sum_probs=149.0

Q ss_pred             CCCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc-Ccc-ccCceeEeecCCeEE
Q 021845           61 DTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS-RSL-YRNTLVHKIFPGQFF  138 (306)
Q Consensus        61 ~~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~-~~~-Y~gt~FhRVi~~f~i  138 (306)
                      ....+++||||+++                ++|++|+|+||||.+.||+||+||++||++ .++ |+|+.||||+++|||
T Consensus         7 ~~~~~~~v~~di~i----------------~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~i   70 (173)
T 2r99_A            7 KARSNPQVYMDIKI----------------GNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC   70 (173)
T ss_dssp             ---CCCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEE
T ss_pred             cccCCCEEEEEEEE----------------CCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEE
Confidence            34568999999999                789999999999999999999999999962 255 999999999999999


Q ss_pred             EcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCC
Q 021845          139 LAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCP  218 (306)
Q Consensus       139 q~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p  218 (306)
                      ||||+  ..++|.+|.+++        +..|+||++.++|+++|+|||||.          +||+++||||||+.+  .+
T Consensus        71 QgGd~--~~~~g~gg~si~--------g~~f~dE~~~l~h~~~G~lsmA~~----------gp~t~gSQFfIt~~~--~~  128 (173)
T 2r99_A           71 QGGDF--TNHNGTGGKSIY--------GKKFDDENFILKHTGPGLLSMANS----------GPNTNGSQFFLTCDK--TD  128 (173)
T ss_dssp             EECCT--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSSSEEEECCS----------STTCBCSCEEEESSC--CG
T ss_pred             EeCCc--CCCCCCCCCccC--------CCcccCcccCcccCCCcEEEEccC----------CCCCcccEEEEECCC--CC
Confidence            99997  456788888876        456889999999999999999998          799999999999998  99


Q ss_pred             CCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          219 QLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       219 ~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                      |||++|+|||||++|||||++|++++++                           .++|.++|+|.+||+|+
T Consensus       129 ~LDg~~tVFG~Vv~G~dvv~~I~~~~~~---------------------------~~~P~~~v~I~~cG~l~  173 (173)
T 2r99_A          129 WLDGKHVVFGEVTEGLDVLRQIEAQGSK---------------------------DGKPKQKVIIADCGEYV  173 (173)
T ss_dssp             GGTTTSCEEEEEEECHHHHHHHHTTCCT---------------------------TCCCSSCEEEEEEEECC
T ss_pred             ccCCCeeEEEEEEcCHHHHHHHHhCCCC---------------------------CCCCCCCeEEEEeeeEC
Confidence            9999999999999999999999999875                           38999999999999984

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=1.4e-50  Score=353.65  Aligned_cols=163  Identities=32%  Similarity=0.571  Sum_probs=150.3

Q ss_pred             CCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc--------Cc--cccCceeEeec
Q 021845           64 ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS--------RS--LYRNTLVHKIF  133 (306)
Q Consensus        64 ~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~--------~~--~Y~gt~FhRVi  133 (306)
                      .+++|||||++                +++++|+|+||||.+.||+||+||++||++        +.  +|+|+.||||+
T Consensus         5 ~~~~v~~di~i----------------~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi   68 (177)
T 1a58_A            5 DRRRVFLDVTI----------------DGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVI   68 (177)
T ss_dssp             GCEEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEE
T ss_pred             CCcEEEEEEEE----------------CCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEE
Confidence            47899999999                899999999999999999999999999984        12  89999999999


Q ss_pred             CCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcC
Q 021845          134 PGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTG  213 (306)
Q Consensus       134 ~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~  213 (306)
                      ++|||||||+  ..++|.+|.+++        +..|+||++.++|+++|+|||||.          +||+++||||||+.
T Consensus        69 ~~f~iQgGd~--~~~~g~gg~si~--------g~~f~dE~~~~~h~~~G~lsmAn~----------gp~tngSQFfIt~~  128 (177)
T 1a58_A           69 KNFMIQGGDF--TKGDGTGGESIY--------GGMFDDEEFVMKHDEPFVVSMANK----------GPNTNGSQFFITTT  128 (177)
T ss_dssp             TTTEEEECCC--SSSSSSCCCCTT--------SSCBCCCCCCSCCCSSSEEEECCS----------STTCBCSCEEEESS
T ss_pred             CCCEEEeCCc--cCCCCCCCCccc--------CCcccCcccCcccCCCeEEEEeeC----------CCCCceeEEEEECC
Confidence            9999999997  467788888876        466899999999999999999998          79999999999999


Q ss_pred             CCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          214 PGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       214 ~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                      +  ++|||++|+|||||++|||||++|++++++.                          +++|.++|+|.+||+|.
T Consensus       129 ~--~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~--------------------------~~~P~~~v~I~~~G~l~  177 (177)
T 1a58_A          129 P--APHLNNIHVVFGKVVSGQEVVTKIEYLKTNS--------------------------KNRPLADVVILNCGELV  177 (177)
T ss_dssp             C--CGGGTTTSCEEEEEEECHHHHHHHHTSCBCT--------------------------TSCBSSCEEEEEEEEEC
T ss_pred             C--CCccCCCEEEEEEEEcCHHHHHHHHhCCCCC--------------------------CCcCCCCeEEEEeEEEC
Confidence            8  9999999999999999999999999999874                          58999999999999984

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=5.8e-51  Score=358.91  Aligned_cols=170  Identities=31%  Similarity=0.562  Sum_probs=154.3

Q ss_pred             CCCCCCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc-Ccc-ccCceeEeecCC
Q 021845           58 PTPDTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS-RSL-YRNTLVHKIFPG  135 (306)
Q Consensus        58 ~~~~~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~-~~~-Y~gt~FhRVi~~  135 (306)
                      ....+.++++|||||++                ++|++|+|+||||.+.||+||+||++||++ .++ |+|+.||||+++
T Consensus         8 ~~~~p~~~~~v~~di~i----------------~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~   71 (188)
T 3ich_A            8 KKKGPKVTVKVYFDLRI----------------GDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKD   71 (188)
T ss_dssp             -CCSCEEEEEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETT
T ss_pred             CCCCCCcCCeEEEEEEE----------------CCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECC
Confidence            34556789999999999                789999999999999999999999999973 267 999999999999


Q ss_pred             eEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCC
Q 021845          136 QFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG  215 (306)
Q Consensus       136 f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~  215 (306)
                      |||||||.  ..++|.+|.+++        +..|++|++.++|+++|+|||||.          +||+++||||||+.+ 
T Consensus        72 f~iQgGd~--~~~~g~gg~si~--------g~~f~dE~~~l~h~~~G~lsmAn~----------gp~tngSQFfIt~~~-  130 (188)
T 3ich_A           72 FMIQGGDF--TRGDGTGGKSIY--------GERFPDENFKLKHYGPGWVSMANA----------GKDTNGSQFFITTVK-  130 (188)
T ss_dssp             TEEEECCT--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEESSC-
T ss_pred             CEEEcCCc--cCCCCCCCcccc--------CCcccccccCcccCCCeEEEEccC----------CCCCcccEEEEECCC-
Confidence            99999995  467788888876        467889999999999999999998          799999999999998 


Q ss_pred             CCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEecc
Q 021845          216 PCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKL  291 (306)
Q Consensus       216 ~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~  291 (306)
                       ++|||++|+|||||++|||||++|++++++.                          .++|.++|+|.+||+|..
T Consensus       131 -~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~--------------------------~~~P~~~v~I~~~~~l~~  179 (188)
T 3ich_A          131 -TAWLDGKHVVFGKVLEGMEVVRKVESTKTDS--------------------------RDKPLKDVIIADCGKIEV  179 (188)
T ss_dssp             -CGGGTTTSCEEEEEEECHHHHHHHHTSCBCT--------------------------TSCBSSCEEEEEEEEEEE
T ss_pred             -CcccCCCeeEEEEEeCCHHHHHHHHhCCcCC--------------------------CCeECCCEEEEEeEEEec
Confidence             9999999999999999999999999999974                          479999999999999954

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=1.3e-50  Score=351.71  Aligned_cols=161  Identities=31%  Similarity=0.622  Sum_probs=148.9

Q ss_pred             CCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCcc--------ccCceeEeecCC
Q 021845           64 ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSL--------YRNTLVHKIFPG  135 (306)
Q Consensus        64 ~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~--------Y~gt~FhRVi~~  135 (306)
                      .+++||||+++                ++++.|+|+||||.+.||+||+||++||++.++        |+|+.||||+++
T Consensus         2 ~~~~v~~di~i----------------~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~   65 (170)
T 1qng_A            2 KRSKVFFDISI----------------DNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQ   65 (170)
T ss_dssp             CSCEEEEEEEE----------------SSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETT
T ss_pred             CCCEEEEEEeE----------------CCEeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECC
Confidence            47899999999                799999999999999999999999999983267        999999999999


Q ss_pred             eEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCC
Q 021845          136 QFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG  215 (306)
Q Consensus       136 f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~  215 (306)
                      ||||+||+  ..++|.+|.+++        ++.|+||++.++|+++|+|||||.          +||+++||||||+.+ 
T Consensus        66 f~iQgGd~--~~~~g~gg~si~--------g~~f~dE~~~l~h~~~G~lsmAn~----------gp~tngSQFfIt~~~-  124 (170)
T 1qng_A           66 FMCQGGDI--TNGNGSGGESIY--------GRSFTDENFNMKHDQPGLLSMANA----------GPNTNSSQFFITLVP-  124 (170)
T ss_dssp             TEEEECCT--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEESSC-
T ss_pred             CEEEcCCc--cCCCCCCCcccc--------CCcccccccccccCCCCEEEEeec----------CCCCcccEEEEECCC-
Confidence            99999997  457788888876        466899999999999999999987          799999999999998 


Q ss_pred             CCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          216 PCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       216 ~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                       ++|||++|+|||||++|||||++|+++++.                           +++|.++|+|.+||+|
T Consensus       125 -~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~---------------------------~~~P~~~v~I~~cG~l  170 (170)
T 1qng_A          125 -CPWLDGKHVVFGKVIEGMNVVREMEKEGAK---------------------------SGYVKRSVVITDCGEL  170 (170)
T ss_dssp             -CGGGTTTSCEEEEEEECHHHHHHHHTTCCT---------------------------TCCCSSCEEEEEEEEC
T ss_pred             -CcccCCCeeEEEEEECCHHHHHHHHhCCCC---------------------------CCCCCCCeEEEeceeC
Confidence             999999999999999999999999999884                           4899999999999986

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=1.5e-50  Score=353.36  Aligned_cols=162  Identities=30%  Similarity=0.561  Sum_probs=150.2

Q ss_pred             CCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCcc--------ccCceeEeecC
Q 021845           63 TITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSL--------YRNTLVHKIFP  134 (306)
Q Consensus        63 ~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~--------Y~gt~FhRVi~  134 (306)
                      +.+++||||+++                ++|+.|+|+||||.+.||+||+||++||++ ++        |+|+.||||++
T Consensus         8 ~~~~~v~~di~i----------------~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~-~~g~~g~~~~Y~g~~FhRvi~   70 (177)
T 1mzw_A            8 PVNPVVFFDVSI----------------GGQEVGRMKIELFADVVPKTAENFRQFCTG-EFRKDGVPIGYKGSTFHRVIK   70 (177)
T ss_dssp             CCCCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHT-CCEETTEECSSTTCBCCEEET
T ss_pred             CCCCEEEEEEEE----------------CCeeceeEEEEEcCCCCcHHHHHHHHHHhc-ccCCcCccceECCCEEEEEEC
Confidence            347899999999                789999999999999999999999999998 66        99999999999


Q ss_pred             CeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCC
Q 021845          135 GQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP  214 (306)
Q Consensus       135 ~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~  214 (306)
                      +|||||||+  ..++|.+|.+++        ++.|+||++.++|+++|+|||||.          +||+++|||||++++
T Consensus        71 ~f~iQgGd~--~~~~G~gg~si~--------g~~f~dE~~~l~h~~~G~lsmAn~----------gp~tngSQFfIt~~~  130 (177)
T 1mzw_A           71 DFMIQGGDF--VNGDGTGVASIY--------RGPFADENFKLRHSAPGLLSMANS----------GPSTNGCQFFITCSK  130 (177)
T ss_dssp             TTEEEECCT--TTSSSCCCCCTT--------SSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEESSC
T ss_pred             CCEEEcCCc--ccCCCCCCCccC--------CCcccCcccccccCCCCEEEEccC----------CCCCcceEEEEECCC
Confidence            999999997  467788888876        466889999999999999999998          799999999999998


Q ss_pred             CCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       215 ~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                        .+|||++|+|||||++|||||++|++++++.                          +++|.++|+|.+||+|
T Consensus       131 --~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~--------------------------~~~P~~~v~I~~cG~l  177 (177)
T 1mzw_A          131 --CDWLDGKHVVFGKIIDGLLVMRKIENVPTGP--------------------------NNKPKLPVVISQCGEM  177 (177)
T ss_dssp             --CGGGTTTSCEEEEEEECHHHHHHHHTSCBCG--------------------------GGCBSSCEEEEEEEEC
T ss_pred             --CCccCCCeeEEEEEeCCHHHHHHHHhCCcCC--------------------------CCCCCCCEEEEeceeC
Confidence              9999999999999999999999999999863                          4899999999999986

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-50  Score=356.38  Aligned_cols=165  Identities=29%  Similarity=0.547  Sum_probs=150.7

Q ss_pred             CCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc----------CccccCceeEee
Q 021845           63 TITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS----------RSLYRNTLVHKI  132 (306)
Q Consensus        63 ~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~----------~~~Y~gt~FhRV  132 (306)
                      .++++|||||++                ++|++|+|+||||.+.||+||+||++||++          .++|+|+.||||
T Consensus        17 ~~~~~vf~di~i----------------~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRV   80 (192)
T 2he9_A           17 RGSPQCHFDIEI----------------NREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRV   80 (192)
T ss_dssp             --CCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEE
T ss_pred             cCCCeEEEEEEE----------------CCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEE
Confidence            568999999999                899999999999999999999999999962          268999999999


Q ss_pred             cCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEc
Q 021845          133 FPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT  212 (306)
Q Consensus       133 i~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl  212 (306)
                      +++||||+||+  ..++|.+|.++|        +..|+||++.++|+++|+|||||.          +||+|+||||||+
T Consensus        81 i~~fmiQgGd~--~~~~G~gg~siy--------g~~f~dE~~~l~h~~~G~lsMAn~----------gp~tngSQFFIt~  140 (192)
T 2he9_A           81 VKNFMIQGGDF--SEGNGKGGESIY--------GGYFKDENFILKHDRAFLLSMANR----------GKHTNGSQFFITT  140 (192)
T ss_dssp             ETTTEEEECCT--TTSSSSCCCCTT--------SSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEES
T ss_pred             ECCCEEEcCcc--cCCCCCCCCccc--------CCcccCccccCCCCCCeEEEEEeC----------CCCCcceEEEEEc
Confidence            99999999997  467788888886        467899999999999999999998          7999999999999


Q ss_pred             CCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEecc
Q 021845          213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKL  291 (306)
Q Consensus       213 ~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~  291 (306)
                      .+  ++|||++|+|||||++|||||++|++++++.                          .++|.++|+|.+||+|..
T Consensus       141 ~~--~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~--------------------------~~~P~~~v~I~~~g~l~~  191 (192)
T 2he9_A          141 KP--APHLDGVHVVFGLVISGFEVIEQIENLKTDA--------------------------ASRPYADVRVIDCGVLAT  191 (192)
T ss_dssp             SC--CGGGTTTSCEEEEEEECHHHHHHHHTSCBCT--------------------------TSCBSSCEEEEEEEECC-
T ss_pred             CC--CcccCCCccEEEEEEeCHHHHHHHHcCCcCC--------------------------CCCCcCCeEEEEeEEEcc
Confidence            98  9999999999999999999999999999874                          589999999999999975

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=1.5e-50  Score=351.52  Aligned_cols=163  Identities=33%  Similarity=0.635  Sum_probs=150.0

Q ss_pred             CCCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhc--cCcc-ccCceeEeecCCeE
Q 021845           61 DTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCS--SRSL-YRNTLVHKIFPGQF  137 (306)
Q Consensus        61 ~~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~--~~~~-Y~gt~FhRVi~~f~  137 (306)
                      .+.++++|||||++                ++|++|+|+||||.+.||+||+||++||+  . ++ |+|+.||||+|+||
T Consensus         7 ~~~~~~~v~~di~i----------------~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~-g~~Y~g~~FhRvi~~f~   69 (172)
T 2haq_A            7 EPEVTAKVYFDVMI----------------DSEPLGRITIGLFGKDAPLTTENFRQLCTGEH-GFGYKDSIFHRVIQNFM   69 (172)
T ss_dssp             CCCCCEEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-SCCSTTCBCCEEETTTE
T ss_pred             CCCCCCeEEEEEEE----------------CCEecceEEEEEeCCCCcHHHHHHHHHhccCC-CcccCCCEEEEEECCCE
Confidence            35679999999999                89999999999999999999999999994  5 77 99999999999999


Q ss_pred             EEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCC
Q 021845          138 FLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPC  217 (306)
Q Consensus       138 iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~  217 (306)
                      |||||.  ..++|.+|.+++        ++.|++|++.++|+ +|+|||||.          +||+++||||||+++  +
T Consensus        70 iQgGd~--~~~~g~gg~si~--------g~~f~dE~~~l~h~-~G~lsmAn~----------gp~tngSQFfIt~~~--~  126 (172)
T 2haq_A           70 IQGGDF--TNFDGTGGKSIY--------GEKFADENLNVKHF-VGALSMANA----------GPNTNGSQFFITTAP--T  126 (172)
T ss_dssp             EEECCT--TTSSSSCCCCSS--------SSCBCCCCCCSCCC-TTEEEECCS----------STTCBCSCEEEESSC--C
T ss_pred             EecCCc--cCCCCCCCcccc--------CCcccCcCCCcccC-ceEEEEccC----------CCCCcccEEEEECCC--C
Confidence            999995  467788888876        46788999999999 899999998          799999999999998  9


Q ss_pred             CCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          218 PQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       218 p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      ++||++|+|||||++|||||++|++++++.                          .++|.++|+|.+||+|
T Consensus       127 ~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~--------------------------~~~P~~~v~I~~~g~l  172 (172)
T 2haq_A          127 PWLDGRHVVFGKVLDGMDVVLRIEKTKTNS--------------------------HDRPVKPVKIVASGEL  172 (172)
T ss_dssp             GGGTTTSCEEEEEEECHHHHHHHHTSCBCG--------------------------GGCBSSCEEEEEEEEC
T ss_pred             CccCCCEeEEEEEeCCHHHHHHHHhCCcCC--------------------------CCcCCCCeEEEEeEEC
Confidence            999999999999999999999999999874                          4699999999999986

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=2.5e-50  Score=348.24  Aligned_cols=160  Identities=31%  Similarity=0.571  Sum_probs=148.4

Q ss_pred             CceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhc--cCcc-ccCceeEeecCCeEEEcC
Q 021845           65 TDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCS--SRSL-YRNTLVHKIFPGQFFLAG  141 (306)
Q Consensus        65 ~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~--~~~~-Y~gt~FhRVi~~f~iq~G  141 (306)
                      +++||||+++                ++|++|+|+||||.+.||+||+||++||+  . ++ |+|+.||||+|+||||+|
T Consensus         3 ~~~v~~di~i----------------~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~-g~~Y~g~~fhRvi~~f~iQgG   65 (165)
T 2z6w_A            3 NPLVYLDVDA----------------NGKPLGRVVLELKADVVPKTAENFRALCTGEK-GFGYKGSTFHRVIPSFMCQAG   65 (165)
T ss_dssp             CCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-SCCSTTCBEEEEETTTEEEEC
T ss_pred             CCEEEEEEEE----------------CCEeeeEEEEEEeCCCCcHHHHHHHHHhccCC-CccCcCCEEEEEECCCEEEeC
Confidence            6899999999                89999999999999999999999999999  6 77 999999999999999999


Q ss_pred             CCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCC
Q 021845          142 RQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLD  221 (306)
Q Consensus       142 d~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LD  221 (306)
                      |+  ..++|.+|.+++        +..|+||++.++|+++|+|||||.          +||+++|||||++.+  .+|||
T Consensus        66 d~--~~~~g~gg~si~--------g~~f~dE~~~l~h~~~G~lsmA~~----------gp~s~~SQFfI~~~~--~~~Ld  123 (165)
T 2z6w_A           66 DF--TNHNGTGGKSIY--------GSRFPDENFTLKHVGPGVLSMANA----------GPNTNGSQFFICTIK--TDWLD  123 (165)
T ss_dssp             CT--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEESSC--CGGGT
T ss_pred             Cc--cCCCCCCCCccc--------CCcccCcccccccCCCCEEEEeeC----------CCCCcccEEEEEcCC--CcccC
Confidence            97  456777888776        456889999999999999999998          799999999999998  99999


Q ss_pred             CCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          222 NKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       222 g~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                      ++|+|||||++|||||++|+++++.                           +++|.++|+|.+||+|.
T Consensus       124 g~~~vFG~Vv~G~dvv~~I~~~~~~---------------------------~~~P~~~v~I~~~g~l~  165 (165)
T 2z6w_A          124 GKHVVFGHVIEGMDVVKKIESFGSK---------------------------SGRTSKKIVITDCGQLS  165 (165)
T ss_dssp             TTSCEEEEEEECHHHHHHHHHTCCT---------------------------TSCCSSCEEEEEEEECC
T ss_pred             CCeeEEEEEEcCHHHHHHHHhCCCC---------------------------CCCCCCcEEEEEeEEEC
Confidence            9999999999999999999998764                           48999999999999984

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=2.4e-50  Score=350.43  Aligned_cols=164  Identities=30%  Similarity=0.529  Sum_probs=149.4

Q ss_pred             CCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc-Ccc-ccCceeEeecCCeEEE
Q 021845           62 TTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS-RSL-YRNTLVHKIFPGQFFL  139 (306)
Q Consensus        62 ~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~-~~~-Y~gt~FhRVi~~f~iq  139 (306)
                      ...+++||||+++                ++|+.|+|+||||.+.||+||+||++||++ .++ |+|+.||||+|+||||
T Consensus         7 ~~~~~~v~~di~i----------------~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQ   70 (172)
T 2cmt_A            7 KRNLPRVFFDIRI----------------GNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQ   70 (172)
T ss_dssp             --CCCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEE
T ss_pred             CCCCCEEEEEEEE----------------CCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEE
Confidence            3558899999999                789999999999999999999999999984 256 9999999999999999


Q ss_pred             cCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCC
Q 021845          140 AGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQ  219 (306)
Q Consensus       140 ~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~  219 (306)
                      |||+  ..++|.+|.+++        +..|+||++.++|+++|+|||||.          +||+++|||||++.+  .+|
T Consensus        71 gGd~--~~~~G~gg~si~--------g~~f~dE~~~l~h~~~G~lsmA~~----------gp~t~gSQFfIt~~~--~~~  128 (172)
T 2cmt_A           71 GGDF--VKGDGTGGKSIY--------GRKFDDENFQLRHEGFGVLSMANS----------GPNTNGSQFFICTTK--CDW  128 (172)
T ss_dssp             ECCT--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEESSC--CGG
T ss_pred             cCCc--cCCCCCCCCccC--------CCcccccccCcccCCceEEEEeeC----------CCCCcccEEEEECCC--CCc
Confidence            9997  456778888876        456889999999999999999997          799999999999998  999


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          220 LDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       220 LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                      ||++|+|||||++|||||++|++++++                           +++|.++|+|.+||+|+
T Consensus       129 LDg~~tvFG~Vv~G~dvv~~I~~~~~~---------------------------~~~P~~~v~I~~~g~l~  172 (172)
T 2cmt_A          129 LDGKHVVFGRVVDGQNVVKKMESVGSK---------------------------SGKVKEPVIISRCGELI  172 (172)
T ss_dssp             GTTTSCEEEEEEECHHHHHHGGGGCCT---------------------------TCCCSSCEEEEEEEEEC
T ss_pred             cCCCeeEEEEEEcCHHHHHHHHhCCCC---------------------------CCCCCCCEEEEEeEeEC
Confidence            999999999999999999999999875                           48999999999999984

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=2.4e-50  Score=350.92  Aligned_cols=162  Identities=31%  Similarity=0.584  Sum_probs=149.3

Q ss_pred             CCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccC-c--------cccCceeEeecC
Q 021845           64 ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSR-S--------LYRNTLVHKIFP  134 (306)
Q Consensus        64 ~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~-~--------~Y~gt~FhRVi~  134 (306)
                      .+++||||+++                +++++|+|+||||.+.||+||+||++||++. +        +|+|+.||||++
T Consensus         2 ~~~~v~~di~i----------------~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~   65 (173)
T 2igv_A            2 SRSKVFFDITI----------------GGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP   65 (173)
T ss_dssp             CCCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEET
T ss_pred             CCCEEEEEEEE----------------CCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEEC
Confidence            37899999999                8999999999999999999999999999861 2        799999999999


Q ss_pred             CeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCC
Q 021845          135 GQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP  214 (306)
Q Consensus       135 ~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~  214 (306)
                      +|||||||+  ..++|.+|.++|        +..|+||++.++|+++|+|||||.          +||+++||||||+.+
T Consensus        66 ~f~iQgGd~--~~~~G~gg~siy--------g~~f~dE~~~l~h~~~G~lsmAn~----------gp~tngSQFfIt~~~  125 (173)
T 2igv_A           66 NFMIQGGDF--TRGNGTGGESIY--------GEKFPDENFKEKHTGPGVLSMANA----------GPNTNGSQFFLCTVK  125 (173)
T ss_dssp             TTEEEECCT--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECCS----------STTCBSSCEEEESSC
T ss_pred             CCEEEcCCC--CCCCCCCCCccC--------CCcccCcccccCCCCCeEEEEeeC----------CCCCcceEEEEEcCC
Confidence            999999997  467788888876        456899999999999999999998          799999999999998


Q ss_pred             CCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       215 ~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                        ++|||++|+|||||++|||||++|+++++.                           .++|.++|+|.+||+|+
T Consensus       126 --~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~---------------------------~~~P~~~v~I~~~g~l~  172 (173)
T 2igv_A          126 --TEWLDGKHVVFGRVVEGLDVVKAVESNGSQ---------------------------SGKPVKDCMIADCGQLK  172 (173)
T ss_dssp             --CGGGTTTSCEEEEEEECHHHHHHHHTTCCT---------------------------TSCCSSCEEEEEEEEEC
T ss_pred             --ccccCCCeeEEEEEecCHHHHHHHHhCCCC---------------------------CCCCCCCEEEEEeEEEc
Confidence              999999999999999999999999999885                           48999999999999985

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=3.5e-50  Score=347.11  Aligned_cols=160  Identities=27%  Similarity=0.570  Sum_probs=148.5

Q ss_pred             CceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhc--cCcc-ccCceeEeecCCeEEEcC
Q 021845           65 TDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCS--SRSL-YRNTLVHKIFPGQFFLAG  141 (306)
Q Consensus        65 ~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~--~~~~-Y~gt~FhRVi~~f~iq~G  141 (306)
                      +++|||||++                ++|+.|+|+||||.+.||+||+||++||+  . ++ |+|+.||||+++||||+|
T Consensus         2 ~p~vf~di~i----------------~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~-g~~Y~g~~fhRvi~~f~iQgG   64 (164)
T 3pmp_A            2 MANVFFNISI----------------NDKPEGRIVFKLYDEAVPKTAKNFRELATGQH-GFGYKDSIFHRVIPQFMLQGG   64 (164)
T ss_dssp             CCCEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-SCSSTTCBEEEEETTTEEEEC
T ss_pred             CCEEEEEEEE----------------CCEEeeEEEEEEeCCCCcHHHHHHHHHhcccC-CCcccCCEEEEEECCCeEEeC
Confidence            6899999999                78999999999999999999999999999  5 67 999999999999999999


Q ss_pred             CCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCC
Q 021845          142 RQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLD  221 (306)
Q Consensus       142 d~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LD  221 (306)
                      |.  ..+++.+|.+++        +..|++|++.++|+++|+|||||.          +||+++|||||++.+  .+|||
T Consensus        65 d~--~~~~g~gg~si~--------g~~~~dE~~~l~h~~~G~lsma~~----------g~~t~~SQFfIt~~~--~~~Ld  122 (164)
T 3pmp_A           65 DF--TRHNGTGGKSIY--------GEKFADENFQVKHTKPGLLSMANA----------GANTNGSQFFITTVP--TSWLD  122 (164)
T ss_dssp             CT--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECBS----------STTCBCSCEEEESSC--CGGGT
T ss_pred             CC--CCCCCCCCcccC--------CccccccccccCcCCCcEEEEeeC----------CCCCcccEEEEECCC--ChhhC
Confidence            95  467788888876        567899999999999999999998          799999999999998  99999


Q ss_pred             CCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          222 NKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       222 g~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                      ++|+|||||++|||||++|++++++                           .++|.++|+|.+||+|.
T Consensus       123 ~~~~vFG~Vv~G~~vv~~I~~~~~~---------------------------~~~P~~~v~I~~cg~l~  164 (164)
T 3pmp_A          123 GKHVVFGEVIEGLDIVRKVEGKGSA---------------------------SGKTNATIKITDCGTVA  164 (164)
T ss_dssp             TTSCEEEEEEECHHHHHHHHTTCCT---------------------------TCCCSSCEEEEEEEEC-
T ss_pred             CCccEEEEEeCCHHHHHHHHhCCCC---------------------------CCCcccCEEEEeCeEEC
Confidence            9999999999999999999999886                           38999999999999984

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=2.2e-50  Score=354.67  Aligned_cols=168  Identities=30%  Similarity=0.541  Sum_probs=154.6

Q ss_pred             CCCCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc--CccccCceeEeecCCeE
Q 021845           60 PDTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS--RSLYRNTLVHKIFPGQF  137 (306)
Q Consensus        60 ~~~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~--~~~Y~gt~FhRVi~~f~  137 (306)
                      .++.++++|||||++                +++++|+|+||||.+.||+||+||++||++  +.+|+|+.||||+++||
T Consensus         7 ~~p~~~~~v~~di~i----------------~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~   70 (185)
T 4fru_A            7 KGPKVTVKVYFDLRI----------------GDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFM   70 (185)
T ss_dssp             EEEEEEEEEEEEEEE----------------TTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTE
T ss_pred             CCCCcCcEEEEEEEE----------------CCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCe
Confidence            346789999999999                789999999999999999999999999985  23799999999999999


Q ss_pred             EEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCC
Q 021845          138 FLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPC  217 (306)
Q Consensus       138 iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~  217 (306)
                      |||||+  ..+++.+|.+++        +..|++|++.++|+++|+|||||.          ++|+++|||||++.+  .
T Consensus        71 iQgGd~--~~~~g~gg~si~--------g~~f~de~~~~~h~~~G~lsma~~----------gp~t~~SQFfI~~~~--~  128 (185)
T 4fru_A           71 IQGGDF--TRGDGTGGKSIY--------GERFPDENFKLKHYGPGWVSMANA----------GKDTNGSQFFITTVK--T  128 (185)
T ss_dssp             EEECCT--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEESSC--C
T ss_pred             EEECCC--CCCCCCCCcccc--------CCccCccccccCcCCCeEEEEeeC----------CCCCcceEEEEEeCC--C
Confidence            999997  467788888876        467899999999999999999998          799999999999998  9


Q ss_pred             CCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEecc
Q 021845          218 PQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKL  291 (306)
Q Consensus       218 p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~  291 (306)
                      +|||++|+|||||++|||||++|++++++.                          +++|.++|+|.+||+|..
T Consensus       129 ~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~--------------------------~~~P~~~v~I~~~g~l~~  176 (185)
T 4fru_A          129 AWLDGKHVVFGKVLEGMEVVRKVETTKTDG--------------------------RDKPLKDVTIADCGKIEV  176 (185)
T ss_dssp             GGGTTTSCEEEEEEECHHHHHHHHTSCBCT--------------------------TSCBSSCEEEEEEEEEEE
T ss_pred             cccCCCccEEEEEeCCHHHHHHHHhCCCCC--------------------------CCcCCCCEEEEEceEEec
Confidence            999999999999999999999999999874                          589999999999999976

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=6.6e-50  Score=351.20  Aligned_cols=166  Identities=28%  Similarity=0.570  Sum_probs=149.2

Q ss_pred             CCCCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc-Ccc-ccCceeEeecCCeE
Q 021845           60 PDTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS-RSL-YRNTLVHKIFPGQF  137 (306)
Q Consensus        60 ~~~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~-~~~-Y~gt~FhRVi~~f~  137 (306)
                      +.+..+++||||+++                +++++|+|+||||.+.||+||+||++||++ .++ |+|+.||||+++||
T Consensus        17 ~~~~~~p~v~~di~i----------------~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~   80 (184)
T 3rdd_A           17 FQGMVNPTVFFDIAV----------------DGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM   80 (184)
T ss_dssp             ----CCCEEEEEEEE----------------TTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTE
T ss_pred             cccCCCCEEEEEEeE----------------CCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcE
Confidence            444678999999999                899999999999999999999999999986 133 99999999999999


Q ss_pred             EEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCC
Q 021845          138 FLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPC  217 (306)
Q Consensus       138 iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~  217 (306)
                      |||||+  ..+++.+|.+++        +..|++|++.++|+++|+|||||.          +||+++|||||++++  .
T Consensus        81 iQgGd~--~~~~g~gg~si~--------g~~~~de~~~l~h~~~G~lsmA~~----------gp~s~gSQFfIt~~~--~  138 (184)
T 3rdd_A           81 CQGGDF--TRHNGTGGKSIY--------GEKFEDENFILKHTGPGILSMANA----------GPNTNGSQFFICTAK--T  138 (184)
T ss_dssp             EEECCT--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECCS----------STTCBSSCEEEESSC--C
T ss_pred             EEeCCC--CCCCCCCCcccC--------CCcccCcccccccCCCcEEEEEeC----------CCCCcccEEEEEeCC--c
Confidence            999996  467788888776        466889999999999999999997          799999999999998  9


Q ss_pred             CCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          218 PQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       218 p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                      ++||++|+|||||++|||||++|++++++                           .++|.++|+|.+||+|+
T Consensus       139 ~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~---------------------------~g~P~~~v~I~~cG~l~  184 (184)
T 3rdd_A          139 EWLDGKHVVFGKVKEGMNIVEAMERFGSR---------------------------NGKTSKKITIADCGQLE  184 (184)
T ss_dssp             GGGTTTSCEEEEEEECHHHHHHHHTTCCT---------------------------TSCCSSCEEEEEEEECC
T ss_pred             hhhCCCceEEEEEecCHHHHHHHHhcCCC---------------------------CCCCcCCeEEEeCeEEC
Confidence            99999999999999999999999999775                           48999999999999985

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=2.3e-49  Score=348.17  Aligned_cols=162  Identities=31%  Similarity=0.604  Sum_probs=147.3

Q ss_pred             CCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc-Ccc--------ccCceeEee
Q 021845           62 TTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS-RSL--------YRNTLVHKI  132 (306)
Q Consensus        62 ~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~-~~~--------Y~gt~FhRV  132 (306)
                      ...+++||||+++                ++++.|+|+||||.+.||+||+||++||++ .++        |+|+.||||
T Consensus        16 ~~~~~~v~~di~i----------------~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRV   79 (186)
T 2poy_A           16 FQGNPVVYFDISI----------------GQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRI   79 (186)
T ss_dssp             --CCCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEE
T ss_pred             cCCCCEEEEEEeE----------------CCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEE
Confidence            3568999999999                789999999999999999999999999973 256        999999999


Q ss_pred             cCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEc
Q 021845          133 FPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT  212 (306)
Q Consensus       133 i~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl  212 (306)
                      +++||||+||+  ..++|.+|.+++        ++.|+||++.++|+++|+|||||.          +||+|+||||||+
T Consensus        80 i~~f~iQgGd~--~~~~G~gg~si~--------g~~f~dE~~~l~h~~~G~lsMAn~----------gpntngSQFFIt~  139 (186)
T 2poy_A           80 IPQFMIQGGDF--TRGDGTGGESIY--------GSKFRDENFVYTHDAPFLLSMANA----------GPNTNGSQFFITT  139 (186)
T ss_dssp             ETTTEEEECCT--TTSSSSCCCCTT--------C-CBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEES
T ss_pred             eCCCEEEeCCC--CCCCCCCCCccC--------CCcccCcccccccCCCcEEEEeeC----------CCCCcccEEEEEC
Confidence            99999999997  467788888876        466899999999999999999997          7999999999999


Q ss_pred             CCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeE
Q 021845          213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGE  288 (306)
Q Consensus       213 ~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~  288 (306)
                      .+  ++|||++|+|||||++|||||++|+++++.                           +++|.++|+|.+||+
T Consensus       140 ~~--~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~---------------------------~~~P~~~v~I~~cG~  186 (186)
T 2poy_A          140 VP--CPWLDGKHVVFGKVLEGMEVVKSIEKCGSQ---------------------------NGKPTKSVCITASGV  186 (186)
T ss_dssp             SC--CGGGTTTSCEEEEEEECHHHHHHHHHTCCT---------------------------TSCCSSCEEEEEEEC
T ss_pred             CC--CcccCCCeeEEEEEecCHHHHHHHHhCCCC---------------------------CCCCCCCEEEEeCCC
Confidence            98  999999999999999999999999999885                           489999999999996

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=9.7e-49  Score=346.08  Aligned_cols=163  Identities=28%  Similarity=0.543  Sum_probs=149.4

Q ss_pred             CCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc-Ccc-ccCceeEeecCCeEEEc
Q 021845           63 TITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS-RSL-YRNTLVHKIFPGQFFLA  140 (306)
Q Consensus        63 ~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~-~~~-Y~gt~FhRVi~~f~iq~  140 (306)
                      ..+++|||||++                ++|++|+|+||||.+.||+||+||++||++ .++ |+|+.||||+++|+|||
T Consensus        25 ~~~p~v~~di~i----------------~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQg   88 (193)
T 3k2c_A           25 EASGNVYFDVYA----------------NEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQG   88 (193)
T ss_dssp             -CTTCEEEEEEE----------------TTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEE
T ss_pred             cCCCEEEEEEeE----------------CCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEe
Confidence            557899999999                899999999999999999999999999983 145 99999999999999999


Q ss_pred             CCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCC
Q 021845          141 GRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQL  220 (306)
Q Consensus       141 Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~L  220 (306)
                      ||.  ..+++.+|.+++        +..|++|++.++|+++|+|||||.          ++|+++|||||++++  .++|
T Consensus        89 Gd~--~~~~g~gg~si~--------g~~f~dE~~~l~h~~~G~lsmAn~----------gp~t~gSQFFIt~~~--~~~L  146 (193)
T 3k2c_A           89 GDY--TAHNGTGGRSIY--------GEKFPDENFELKHTKEGILSMANC----------GAHTNGSQFFITLGK--TQWL  146 (193)
T ss_dssp             CCT--TTSSSSCCCCTT--------SSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEESSC--CGGG
T ss_pred             CCC--CCCCCcCCcccC--------CCcccccccccccCCCcEEEEEeC----------CCCCCccEEEEECCC--Cccc
Confidence            995  467778888876        467889999999999999999998          799999999999998  9999


Q ss_pred             CCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCC--CcEEEeeeeEec
Q 021845          221 DNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPL--KTVYISDCGELK  290 (306)
Q Consensus       221 Dg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~--~~V~I~~cg~l~  290 (306)
                      |++|+|||||++|||||++|++++++.                           ++|.  ++|+|.+||+|.
T Consensus       147 Dg~~tVFG~Vv~Gmdvv~~I~~~~t~~---------------------------g~P~~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          147 DEKHVVFGEVVEGMDVVHKIAKYGSES---------------------------GQVKKGYRIEIRDCGVLG  191 (193)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTTCCTT---------------------------CCCCTTCCEEEEEEEECC
T ss_pred             CCCccEEEEEeCCHHHHHHHHhcCCCC---------------------------CcCccCccEEEEEceEeC
Confidence            999999999999999999999998863                           7899  999999999986

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.7e-48  Score=352.02  Aligned_cols=163  Identities=26%  Similarity=0.508  Sum_probs=149.6

Q ss_pred             CCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCc-------cccCceeEeecCCe
Q 021845           64 ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRS-------LYRNTLVHKIFPGQ  136 (306)
Q Consensus        64 ~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~-------~Y~gt~FhRVi~~f  136 (306)
                      .+++||||+++                ++|++|+|+||||.+.||+||+||++||+++.       +|+|+.||||+++|
T Consensus        58 ~~~~V~~disi----------------~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~F  121 (229)
T 1z81_A           58 SNPVVFMDINL----------------GNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF  121 (229)
T ss_dssp             TCCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTT
T ss_pred             CCcEEEEEEeE----------------CCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCC
Confidence            47899999999                78999999999999999999999999999721       79999999999999


Q ss_pred             EEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCC
Q 021845          137 FFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGP  216 (306)
Q Consensus       137 ~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~  216 (306)
                      ||||||+  ..++|.+|.+++        ++.|+||++.++|+++|+|||||.          +||+++||||||+.+  
T Consensus       122 miQgGD~--~~g~G~Gg~siy--------g~~f~dE~~~l~h~~~G~LsMAn~----------gpntngSQFFIt~~~--  179 (229)
T 1z81_A          122 MIQGGDF--INHNGSGSLSIY--------GEKFDDENFDIKHDKEGLLSMANS----------GPNTNGCQFFITTKK--  179 (229)
T ss_dssp             EEEECCT--TTSSSCCCCBTT--------BSCCCCCCCCSCCCSTTEEEECCS----------SSSCCCSCEEEESSC--
T ss_pred             EEEcCCC--cCCCCCCCCccC--------CCcccccccccccCCCcEEEeccC----------CCCCcccEEEEECCC--
Confidence            9999997  467788888876        466899999999999999999998          799999999999998  


Q ss_pred             CCCCCCCCcEEEEEE--cCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          217 CPQLDNKNIVFGTVL--QGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       217 ~p~LDg~~tVFGrVv--~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      +++||++|+|||||+  +|||||++|++++++.                         ..++|.++|+|.+||+|
T Consensus       180 ~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~-------------------------~~~~P~~~V~I~~cG~l  229 (229)
T 1z81_A          180 CEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTP-------------------------YIYKPKIPINVVECGEL  229 (229)
T ss_dssp             CGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCT-------------------------TTCCBSSCEEEEEEEEC
T ss_pred             CcccCCCeeEEEEEEecCcHHHHHHHHhCCCCC-------------------------CCCCCCCCeEEEeCeeC
Confidence            999999999999999  9999999999999874                         02899999999999986

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=1.1e-48  Score=340.20  Aligned_cols=167  Identities=28%  Similarity=0.530  Sum_probs=122.3

Q ss_pred             CCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc-Ccc-ccCceeEeecCCeEEEcC
Q 021845           64 ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS-RSL-YRNTLVHKIFPGQFFLAG  141 (306)
Q Consensus        64 ~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~-~~~-Y~gt~FhRVi~~f~iq~G  141 (306)
                      +| +|||||++.|+           ....|++|+|+||||.+.||+||+||++||++ .++ |+|+.||||+++||||||
T Consensus         2 it-~vf~di~i~~~-----------~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgG   69 (172)
T 2c3b_A            2 MS-QVFFDVEYAPV-----------GTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGG   69 (172)
T ss_dssp             CC-CEEEEEEECCT-----------TCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEEC
T ss_pred             ce-EEEEEEEeCCC-----------CceecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeC
Confidence            57 99999999421           12357789999999999999999999999993 156 999999999999999999


Q ss_pred             CCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCC
Q 021845          142 RQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLD  221 (306)
Q Consensus       142 d~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LD  221 (306)
                      |.  ..++|.+|.++|        ++.|++|++.++|+++|+|||||.          +||+++|||||++.+  .+|||
T Consensus        70 d~--~~~~g~gg~si~--------g~~f~dE~~~~~h~~~G~lsmA~~----------gp~t~gSQFfIt~~~--~~~LD  127 (172)
T 2c3b_A           70 DF--TRGNGTGGRSIY--------GDKFADENFSRKHDKKGILSMANA----------GPNTNGSQFFITTAV--TSWLD  127 (172)
T ss_dssp             C--------------------------------CHHHHHTCEEEEC-------------------CEEEECSC--CTTCC
T ss_pred             Cc--CCCCCCCCcccC--------CCcccCcccccccCCCeEEEEeeC----------CCCCcccEEEEECCC--CCccC
Confidence            94  367788888876        466889988999999999999998          799999999999998  99999


Q ss_pred             CCCcEEEEEEc--CHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          222 NKNIVFGTVLQ--GLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       222 g~~tVFGrVv~--GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      ++|+|||||++  |||||++|++++++.               |          +++|.++|+|.+||+|
T Consensus       128 g~~tvFG~Vv~~~G~dvv~~I~~~~t~~---------------~----------~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          128 GKHVVFGEVADEKSYSVVKEIEALGSSS---------------G----------SVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             SCCEEEEEECSHHHHHHHHHHHTTCCTT---------------S----------CCCSSSCCEEEEEEEC
T ss_pred             CCeeEEEEEEecCCHHHHHHHHhCCCCC---------------C----------CccCCCCeEEEeCeeC
Confidence            99999999999  999999999998874               0          1399999999999986

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=4e-48  Score=351.22  Aligned_cols=174  Identities=24%  Similarity=0.376  Sum_probs=147.3

Q ss_pred             CCCCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccC----------------c-
Q 021845           60 PDTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSR----------------S-  122 (306)
Q Consensus        60 ~~~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~----------------~-  122 (306)
                      +....+++|||||+|                ++|++|+|+||||.+.||+||+||++||++.                + 
T Consensus         9 p~~~~~p~v~~di~i----------------~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~   72 (234)
T 2ose_A            9 PNSGKNPRVYMDIVL----------------NNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHI   72 (234)
T ss_dssp             CCCCSSCEEEEEEEE----------------TTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------
T ss_pred             CcCCCCCEEEEEEEE----------------CCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCC
Confidence            444668999999999                6799999999999999999999999999952                2 


Q ss_pred             -c-ccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEec----CCCCCCCC
Q 021845          123 -L-YRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCL----SENDDDPD  196 (306)
Q Consensus       123 -~-Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~----~~~~~~~~  196 (306)
                       + |+|+.||||+++|||||||.  ..++|.+|.++|+...   ...+|+  ++.++|+++|+|||||    .       
T Consensus        73 ~~~Y~gt~FHRVi~~FmiQgGd~--~~g~G~Gg~siyg~~~---~p~~f~--~~~l~h~~~G~lsMAn~~~~~-------  138 (234)
T 2ose_A           73 NRTYEGCKFHNVLHNNYIVSGDI--YNSNGSSAGTVYCDEP---IPPVFG--DYFYPHESKGLLSLVPYTDES-------  138 (234)
T ss_dssp             CCCSTTCBCCEEETTTEEEECCC--C----CCCCCTTTTCC---BCCCCC--SCCCCSCSTTEEEECCEECTT-------
T ss_pred             ceEECCcEEEEEECCCEEEcCCc--cCCCCCCCccccCCcc---Cccccc--CcCccCCCCCEEEEecccccC-------
Confidence             5 99999999999999999995  4778888888875420   011254  5679999999999999    5       


Q ss_pred             CCCCCCCccceEEEEcCC----CCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccc
Q 021845          197 VKLDPHYRNVEFLITTGP----GPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARA  272 (306)
Q Consensus       197 ~~~~p~t~gSqFfItl~~----~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~  272 (306)
                         +||+++||||||+.+    ++++|||++|+|||||++|||||++|++++++.                         
T Consensus       139 ---gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~I~~~~t~~-------------------------  190 (234)
T 2ose_A          139 ---GNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPY-------------------------  190 (234)
T ss_dssp             ---SCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHHHHHHTCCC-------------------------
T ss_pred             ---CCCCccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCC-------------------------
Confidence               799999999999996    227999999999999999999999999998874                         


Q ss_pred             cCCCCCCcEEEeeeeEeccC
Q 021845          273 IWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       273 ~~~~P~~~V~I~~cg~l~~~  292 (306)
                       +++|.++|+|.+||++.++
T Consensus       191 -~~~P~~~V~I~~~~~l~~p  209 (234)
T 2ose_A          191 -AGRKYPTFSIGKCGAYLDS  209 (234)
T ss_dssp             -TTCCCCCEEEEEEEECCCH
T ss_pred             -CCCccCCEEEEEEEEecCC
Confidence             5899999999999999884

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=2.4e-47  Score=328.47  Aligned_cols=153  Identities=28%  Similarity=0.444  Sum_probs=139.8

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      .+|+.|+|+||||.+.||+||+||++||++ ++|+|+.||||+++|+|||||+   .+++.+|.+++        +..|+
T Consensus         5 ~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~-g~Y~g~~fhRvi~~f~iQgGd~---~~~g~gg~si~--------g~~~~   72 (161)
T 2ok3_A            5 LHTDVGDIKIEVFCERTPKTCENFLALCAS-NYYNGCIFHRNIKGFMVQTGDP---TGTGRGGNSIW--------GKKFE   72 (161)
T ss_dssp             EEETTEEEEEEECTTTCHHHHHHHHHHHHT-TTTTTCBCCEEETTTEEEECCT---TSSSSCCCCTT--------SSCBC
T ss_pred             EEeCCccEEEEEcCCCCcHHHHHHHHHhhh-cccCCCEEEEEECCCEEecCCC---CCCCCCCCccc--------CCccc
Confidence            368899999999999999999999999999 9999999999999999999997   56777888776        45688


Q ss_pred             CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845          171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS  249 (306)
Q Consensus       171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~  249 (306)
                      +|.. .++|+++|+|||||.          +||+++|||||++++  .+|||++|+|||||++|||||++|+++++++. 
T Consensus        73 dE~~~~l~h~~~G~lsma~~----------gp~s~~SQFfI~~~~--~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~-  139 (161)
T 2ok3_A           73 DEYSEYLKHNVRGVVSMANN----------GPNTNGSQFFITYGK--QPHLDMKYTVFGKVIDGLETLDELEKLPVNEK-  139 (161)
T ss_dssp             CCCCTTCCSCSTTEEEECCS----------STTCBCSCEEEESSC--CGGGTTTSCEEEEEEECHHHHHHHHTCCBCTT-
T ss_pred             cccCcCcCcCCCeEEEEecC----------CCCCcceEEEEEcCC--CCccCCCEeEEEEEeCCHHHHHHHHhCCccCC-
Confidence            8875 689999999999998          799999999999998  99999999999999999999999999999740 


Q ss_pred             hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                                              .++|.++|+|.+|.++.++
T Consensus       140 ------------------------~~~P~~~v~I~~~~i~~~P  158 (161)
T 2ok3_A          140 ------------------------TYRPLNDVHIKDITIHANP  158 (161)
T ss_dssp             ------------------------TCCBSSCCBEEEEEEECCS
T ss_pred             ------------------------CCCcCCCeEEEEEEEecCC
Confidence                                    2899999999999999874

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=1.8e-47  Score=335.93  Aligned_cols=155  Identities=25%  Similarity=0.405  Sum_probs=139.9

Q ss_pred             CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845           92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP  171 (306)
Q Consensus        92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d  171 (306)
                      +|++|+|+||||.+.||+||+||++||++ +||+|+.||||+++|||||||+   .+++.+|.++|        +..|++
T Consensus        22 ~t~~G~i~ieL~~~~aP~t~~NF~~L~~~-g~Y~g~~FhRvi~~f~iQgGd~---~~~g~gg~si~--------g~~~~d   89 (185)
T 2poe_A           22 ITNYGDLKFELFCSQCPKACKNFLALSAS-GYYKNTIFHKNIKGFIIQGGDP---TGTGKGGESIY--------GRYFDD   89 (185)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHT-TTTTTEEEEEECTTSEEEEEET---TSSSSCCCBTT--------BSCBCC
T ss_pred             EecCccEEEEEeCCCCcHHHHHHHHHhcc-CCCCCCEEEEEECCCEEEcCCC---CCCCCCCCccC--------CCcccc
Confidence            57899999999999999999999999999 9999999999999999999997   56777888776        456888


Q ss_pred             Cc-ccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCch
Q 021845          172 NA-FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSE  250 (306)
Q Consensus       172 e~-~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~  250 (306)
                      |. +.++|+++|+|||||.+...      .||+++|||||++++  ++|||++|+|||||++|||||++|++++++.   
T Consensus        90 E~~~~l~h~~~G~lsmA~~g~~~------~p~s~gSQFFIt~~~--~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~---  158 (185)
T 2poe_A           90 EIYPELKYDRRGILSMASKGASK------KPNTNGSQFFITYSS--LPQLNGEYVIFGKLIDGFETLNTLENCPSDK---  158 (185)
T ss_dssp             CCCTTSCCCSTTEEEECCSCC-C------CCSCBCSCEEEESSC--CGGGTTTSCEEEEEEECHHHHHHHHHSCBCT---
T ss_pred             cccCCCccCCCeEEEEecCCCCC------CCCCccceEEEECCC--CCccCCCeeEEEEEeCCHHHHHHHHhCCcCC---
Confidence            87 68999999999999983100      299999999999998  9999999999999999999999999999874   


Q ss_pred             hhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          251 RIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       251 ~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                                             .++|.++|+|.+|+++.++
T Consensus       159 -----------------------~~~P~~~v~I~~~~i~~dP  177 (185)
T 2poe_A          159 -----------------------SHKPIDEIIIKDIVIHSNP  177 (185)
T ss_dssp             -----------------------TSCBSSCCEEEEEEEECCC
T ss_pred             -----------------------CCCcCCCeEEEEEEEECCC
Confidence                                   4899999999999999874

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=5.5e-47  Score=325.83  Aligned_cols=151  Identities=29%  Similarity=0.415  Sum_probs=138.6

Q ss_pred             CCCCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCC
Q 021845           89 CSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDT  168 (306)
Q Consensus        89 ~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~  168 (306)
                      ++..|+.|+|+||||.+.||+||+||++||+. ++|+|+.||||+++|||||||+   .++|.+|.+++        +..
T Consensus         8 v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~-g~Y~g~~fhRvi~~f~iQgGd~---~~~g~gg~si~--------g~~   75 (160)
T 2fu0_A            8 AIIYTTMGDIHISLFYKECKKTVQNFSVHSIN-GYYNNCIFHRVIKHFMVQTGDP---SGDGTGGESIW--------GNE   75 (160)
T ss_dssp             EEEEETTEEEEEEECTTTCHHHHHHHHHHHHT-TTTTTCBCCEEETTTEEEECCT---TSSSSCCCCTT--------SSC
T ss_pred             EEEEecCccEEEEEeCCCChHHHHHHHHHhcc-CccCCCEEEEEECCCEEEeCCc---CCCCCCCCccc--------CCC
Confidence            33577889999999999999999999999999 9999999999999999999997   56777888776        456


Q ss_pred             CCCCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCC
Q 021845          169 LRPNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYK  247 (306)
Q Consensus       169 ~~de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~  247 (306)
                      |++|.+ .++|+++|+|||||.          +||+++|||||++.+  ++|||++|+|||||++|||||++|+++++++
T Consensus        76 ~~dE~~~~l~h~~~G~lsmA~~----------gp~s~~SQFfI~~~~--~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~  143 (160)
T 2fu0_A           76 FEDEFFDHLNHSKPFMVSMANC----------GPNTNGSQFFITTVP--CPWLDFKHTVFGKVTQGSKIVLDIEKVRTDK  143 (160)
T ss_dssp             BCCCCBTTBCSSSSSEEEECCS----------STTCBCSCEEEESSC--CGGGTTTSCEEEEEEECHHHHHHHHTSCBCT
T ss_pred             ccccccCCcccCCceEEEEecC----------CCCCcccEEEEECCC--CCccCCCcEEEEEEEcCHHHHHHHHhCCcCC
Confidence            888887 599999999999998          799999999999998  9999999999999999999999999999874


Q ss_pred             CchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          248 PSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       248 ~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                                                .++|.++|+|.+|.++
T Consensus       144 --------------------------~~~P~~~v~I~~~~v~  159 (160)
T 2fu0_A          144 --------------------------RDKPLEDIKILNIKIN  159 (160)
T ss_dssp             --------------------------TSCBSSCCBEEEEEEC
T ss_pred             --------------------------CCCcCCCeEEEEEEEe
Confidence                                      5899999999999986

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=8.3e-47  Score=326.52  Aligned_cols=147  Identities=24%  Similarity=0.401  Sum_probs=135.5

Q ss_pred             ccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCC
Q 021845           93 VPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPN  172 (306)
Q Consensus        93 t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de  172 (306)
                      |++|+|+||||.+.||+||+||++||+. ++|+|+.||||+++|||||||+   .+++.+|.+++        +..|++|
T Consensus        18 t~~G~i~ieL~~~~aP~t~~NF~~L~~~-g~Y~g~~fhRvi~~f~iQgGd~---~~~g~gg~si~--------g~~~~dE   85 (166)
T 2x7k_A           18 TSMGIIVLELYWKHAPKTCKNFAELARR-GYYNGTKFHRIIKDFMIQGGDP---TGTGRGGASIY--------GKQFEDE   85 (166)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHH-TTTTTEECCEEETTTEEEECCT---TSSSSCCCCTT--------SSCBCCC
T ss_pred             eCCCcEEEEEccCCCCHHHHHHHHHHhc-CCCCCCEEEEEECCCEEEcCCC---CCCCCCCCccC--------CCccccc
Confidence            4569999999999999999999999999 9999999999999999999997   56777888876        4568888


Q ss_pred             c-ccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchh
Q 021845          173 A-FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSER  251 (306)
Q Consensus       173 ~-~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~  251 (306)
                      . ..++|+++|+|||||.          +||+++|||||++++  .+|||++|+|||||++|||||++|+++++++    
T Consensus        86 ~~~~l~h~~~G~lsmAn~----------gp~s~gSQFfI~~~~--~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~----  149 (166)
T 2x7k_A           86 LHPDLKFTGAGILAMANA----------GPDTNGSQFFVTLAP--TQWLDGKHTIFGRVCQGIGMVNRVGMVETNS----  149 (166)
T ss_dssp             CCTTSCCCSTTEEEECBS----------STTCBCSCEEEESSC--CGGGTTTSCEEEEEEECHHHHHHHTTSCBCT----
T ss_pred             cccccCCCCCeEEEEeeC----------CCCCccceEEEECCC--CCccCCCeeEEEEEEcCHHHHHHHHcCCcCC----
Confidence            7 4799998999999997          799999999999998  9999999999999999999999999999874    


Q ss_pred             hhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          252 IQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       252 ~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                                            .++|.++|+|.+|.++
T Consensus       150 ----------------------~~~P~~~i~I~~~~i~  165 (166)
T 2x7k_A          150 ----------------------QDRPVDDVKIIKAYPS  165 (166)
T ss_dssp             ----------------------TSCBSSCCEEEEEEEC
T ss_pred             ----------------------CCCcCCCeEEEEEEEe
Confidence                                  4799999999999986

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1.3e-46  Score=333.05  Aligned_cols=151  Identities=25%  Similarity=0.403  Sum_probs=139.2

Q ss_pred             CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845           92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP  171 (306)
Q Consensus        92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d  171 (306)
                      .|+.|+|+||||.+.||+||+||++||+. +||+|+.||||+++|||||||+   .++|.+|.+++        +..|++
T Consensus        25 ~T~~G~I~ieL~~~~aP~tv~NF~~L~~~-g~Ydg~~FhRVi~~f~iQgGd~---~~~g~Gg~si~--------g~~f~d   92 (197)
T 1zkc_A           25 HTNKGDLNLELHCDLTPKTCENFIRLCKK-HYYDGTIFHRSIRNFVIQGGDP---TGTGTGGESYW--------GKPFKD   92 (197)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHHHT-TTTTTEEEEEEETTTEEEECCT---TSSSSCCCBTT--------BSCBCC
T ss_pred             EeCCccEEEEEcCCCCcHHHHHHHHHHhc-CCCCCCEEEEEeCCCEEEcCCC---CCCCCCCCccC--------CCcccc
Confidence            56789999999999999999999999999 9999999999999999999997   56777888876        456888


Q ss_pred             C-cccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCch
Q 021845          172 N-AFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSE  250 (306)
Q Consensus       172 e-~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~  250 (306)
                      | +..++|+++|+|||||.          +||+++|||||++.+  +++||++|+|||||++|||||++|++++++.   
T Consensus        93 E~~~~l~h~~~G~lsMAn~----------gp~sngSQFFIt~~~--~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~---  157 (197)
T 1zkc_A           93 EFRPNLSHTGRGILSMANS----------GPNSNRSQFFITFRS--CAYLDKKHTIFGRVVGGFDVLTAMENVESDP---  157 (197)
T ss_dssp             CCCTTCCSCSTTEEEECCS----------STTCBCSCEEEESSC--CGGGTTTSCEEEEEEECHHHHHHHHHSCBCT---
T ss_pred             ccCcCcCCCCceEEEEecC----------CCCCcccEEEEEcCC--CCccCCCccEEEEEEcCHHHHHHHHcCCCCC---
Confidence            8 47899999999999998          799999999999998  9999999999999999999999999999874   


Q ss_pred             hhhhhhhhHhhhcccccccccccC-CCCCCcEEEeeeeEeccC
Q 021845          251 RIQKYNELAAFIGDKRADTARAIW-NRPLKTVYISDCGELKLK  292 (306)
Q Consensus       251 ~~~~~~~~a~~~gd~~a~~~~~~~-~~P~~~V~I~~cg~l~~~  292 (306)
                                             . ++|.++|+|.+|+++.++
T Consensus       158 -----------------------~~~~P~~~i~I~~~~v~~dP  177 (197)
T 1zkc_A          158 -----------------------KTDRPKEEIRIDATTVFVDP  177 (197)
T ss_dssp             -----------------------TTCCBSSCCEEEEEEEEECT
T ss_pred             -----------------------CCCCcCCCeEEEEEEEEcCC
Confidence                                   3 899999999999999874

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=1.6e-46  Score=333.97  Aligned_cols=161  Identities=24%  Similarity=0.377  Sum_probs=137.9

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcC-----CCCCcCCCCCCCccCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAG-----RQGLSRRDSKLGELHPPLDFLPPN  165 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~G-----d~~~~~~~g~~g~s~~~~~~~~~~  165 (306)
                      ..|+.|+|+||||++.||+||+||++||+. +||+|+.||||+++||||||     |+   .++|.+|.++|.... ...
T Consensus        11 l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~-g~Ydg~~FhRvi~~f~iQgG~~~~~Dp---~~~g~gg~si~~~~~-~~~   85 (201)
T 3bo7_A           11 IVTTQGSLNIELHADMAPRACDSFLRLCAV-KYFDDTIFHRCIRNFMIQGGRAELRQP---SKKKEVQQSPRSISG-FPG   85 (201)
T ss_dssp             EEETTEEEEEEECTTTCHHHHHHHHHHHHT-TTTTTCBEEEEETTTEEEECCGGGCCC----------CCSSCCCS-STT
T ss_pred             EEeCCCCEEEEEcCCCCcHHHHHHHHHHhc-CccCCCEEEEeeCCCEEEcCcccccCC---CCCCCCCcccccccc-ccC
Confidence            367889999999999999999999999999 99999999999999999999     87   567778888874321 123


Q ss_pred             CCCCCCC-cccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCC
Q 021845          166 TDTLRPN-AFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIP  244 (306)
Q Consensus       166 g~~~~de-~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~  244 (306)
                      +..|.+| +..++|+++|+|||||.          +||+++|||||++.+  ++|||++|+|||||++|||||++|++++
T Consensus        86 g~~f~dE~~~~l~h~~~G~lsmA~~----------gp~s~gSQFFIt~~~--~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~  153 (201)
T 3bo7_A           86 GAPFEDEFDNRLVHQGIGVLSMAND----------GKHSNLSEFFITFKS--CEHLNNKHTIFGRVVGGLDVLRQWEKLE  153 (201)
T ss_dssp             CCCBCCCCCTTCCCCSTTEEEECCS----------STTCBSSCEEEESSC--CGGGTTTSCEEEEEEECHHHHHHHTTCC
T ss_pred             CCcccCcccCCCCcCCCcEEEEeeC----------CCCCcccEEEEECCC--CcccCCCceEEEEEecCHHHHHHHHhCC
Confidence            5678888 47899999999999997          799999999999998  9999999999999999999999999999


Q ss_pred             CCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccCCC
Q 021845          245 TYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPN  294 (306)
Q Consensus       245 t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~~~  294 (306)
                      ++.                          +++|.++|+|.+|+++.++..
T Consensus       154 t~~--------------------------~~~P~~~i~I~~~~v~~dPf~  177 (201)
T 3bo7_A          154 TDK--------------------------KDKPLKPPKVEEIIVFKNPFE  177 (201)
T ss_dssp             BCT--------------------------TSCBSSCCBEEEEEEEECCC-
T ss_pred             cCC--------------------------CCCcCCCeEEEEEEEEcCCcc
Confidence            974                          489999999999999998533

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.5e-46  Score=332.47  Aligned_cols=150  Identities=27%  Similarity=0.433  Sum_probs=135.1

Q ss_pred             CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845           92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP  171 (306)
Q Consensus        92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d  171 (306)
                      .|++|+|+||||.+.||+||+||++||+. ++|+|+.||||+++|||||||+   .++|.+|.+++        +..|++
T Consensus        44 ~T~~G~I~ieL~~~~aP~tv~NF~~L~~~-g~Y~g~~FhRVi~~f~iQgGd~---~~~g~gg~si~--------g~~~~d  111 (196)
T 2b71_A           44 YTNLGDFEVELYWYHSPKTCLNFYTLCEM-GFYDNTIFHRVIPNFVIQGGDP---TGTGKGGKSIY--------GEYFED  111 (196)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHHHT-TTTTTEEEEEEETTTEEEEEET---TSSSSCCCBTT--------BSCBCC
T ss_pred             EeCCCCEEEEEeCCCCcHHHHHHHHHhhc-CCcCCCEEEEEeCCcEEEcCCC---CCCCCCCCccC--------CCcccc
Confidence            34569999999999999999999999999 9999999999999999999997   56777888876        456788


Q ss_pred             Cc-ccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCch
Q 021845          172 NA-FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSE  250 (306)
Q Consensus       172 e~-~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~  250 (306)
                      |. ..++|+++|+||||+.          +||+++|||||++++  .+|||++|+|||||++|||||++|++++++.   
T Consensus       112 E~~~~l~h~~~G~lsMAn~----------gpns~gSQFFIt~~~--~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~---  176 (196)
T 2b71_A          112 EINKELKHTGAGILSMSNN----------GPNTNSSQFFITLAP--LPHLDGKHTIFARVSKNMTCIENIASVQTTA---  176 (196)
T ss_dssp             CCCTTCCCCSTTEEEECCS----------STTCBSSCEEEESSC--CGGGTTTSCEEEEEEECHHHHHHHHTSCBCT---
T ss_pred             cccCCcCcCCCeEEEEccC----------CCCCcccEEEEECCC--CCccCCCEeEEEEEecCHHHHHHHHhCCcCC---
Confidence            84 5789999999999987          799999999999998  9999999999999999999999999999874   


Q ss_pred             hhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEecc
Q 021845          251 RIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKL  291 (306)
Q Consensus       251 ~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~  291 (306)
                                             .++|.++|+|.+|+++.+
T Consensus       177 -----------------------~~~P~~~i~I~~~~i~~d  194 (196)
T 2b71_A          177 -----------------------TNKPIFDLKILRTSTAVN  194 (196)
T ss_dssp             -----------------------TCCBSSCCEEEEEEC---
T ss_pred             -----------------------CCCCCCCeEEEEEEEecC
Confidence                                   589999999999999986

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=6.4e-46  Score=323.68  Aligned_cols=148  Identities=26%  Similarity=0.380  Sum_probs=135.7

Q ss_pred             CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845           92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP  171 (306)
Q Consensus        92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d  171 (306)
                      +|++|+|+||||.+.||+||+||++||+. +||+|+.||||+++|||||||+   .++|.+|.+++        +..|++
T Consensus        27 ~t~~G~i~ieL~~~~aP~t~~NF~~L~~~-g~Y~g~~FhRvi~~f~iQgGd~---~~~g~gg~si~--------g~~~~d   94 (176)
T 2a2n_A           27 HTSMGDIHTKLFPVECPKTVENFCVHSRN-GYYNGHTFHRIIKGFMIQTGDP---TGTGMGGESIW--------GGEFED   94 (176)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHT-TTTTTCBCCEEETTTEEEECCT---TSSSSCCCCTT--------SSCBCC
T ss_pred             EecCccEEEEEeCCCChHHHHHHHHHhhc-CccCCCEEEEEECCcEEEccCC---CCCCCCCCccc--------CCcccc
Confidence            56789999999999999999999999999 9999999999999999999997   56777888776        466888


Q ss_pred             Ccc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCch
Q 021845          172 NAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSE  250 (306)
Q Consensus       172 e~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~  250 (306)
                      |.+ .++|+++|+|||||.          +||+++|||||++.+  ++|||++|+|||||++|||||++|++++++.   
T Consensus        95 E~~~~l~h~~~G~lsmA~~----------gp~s~gSQFFIt~~~--~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~---  159 (176)
T 2a2n_A           95 EFHSTLRHDRPYTLSMANA----------GSNTNGSQFFITVVP--TPWLDNKHTVFGRVTKGMEVVQRISNVKVNP---  159 (176)
T ss_dssp             CCCTTCCSCSSSEEEECCS----------STTCBCSCEEEESSC--CGGGTTTSCEEEEEEECHHHHHHHHTSCBCT---
T ss_pred             ccccccccCCceEEEEEeC----------CCCCcccEEEEECCC--CCccCCCeeEEEEEeCCHHHHHHHHcCCccC---
Confidence            887 699999999999997          799999999999998  9999999999999999999999999999872   


Q ss_pred             hhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeE
Q 021845          251 RIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGE  288 (306)
Q Consensus       251 ~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~  288 (306)
                                            ..++|.++|+|.+|.+
T Consensus       160 ----------------------~~~~P~~~v~I~~v~v  175 (176)
T 2a2n_A          160 ----------------------KTDKPYEDVSIINITV  175 (176)
T ss_dssp             ----------------------TTCCBSSCCBEEEEEE
T ss_pred             ----------------------CCCccCCCeEEEEEEE
Confidence                                  0489999999999975

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=1.9e-45  Score=352.37  Aligned_cols=163  Identities=28%  Similarity=0.559  Sum_probs=151.0

Q ss_pred             CceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc--------C--ccccCceeEeecC
Q 021845           65 TDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS--------R--SLYRNTLVHKIFP  134 (306)
Q Consensus        65 ~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~--------~--~~Y~gt~FhRVi~  134 (306)
                      +++||||++|                ++++.|+|+||||.+.||+||+||++||++        +  .+|+|+.||||++
T Consensus        15 ~~~v~~~~~~----------------~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~   78 (370)
T 1ihg_A           15 NPRVFFDVDI----------------GGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIK   78 (370)
T ss_dssp             SCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEET
T ss_pred             CCeEEEEEEE----------------CCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEEC
Confidence            8999999999                899999999999999999999999999996        2  2799999999999


Q ss_pred             CeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCC
Q 021845          135 GQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP  214 (306)
Q Consensus       135 ~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~  214 (306)
                      ||||||||+  ..++|.+|.+++        +..|++|++.++|+++|+|||||.          +|||||||||||+.+
T Consensus        79 ~f~~q~Gd~--~~~~g~g~~~~~--------~~~~~~e~~~~~~~~~g~l~ma~~----------~~~~~~sqffi~~~~  138 (370)
T 1ihg_A           79 KFMIQGGDF--SNQNGTGGESIY--------GEKFEDENFHYKHDKEGLLSMANA----------GSNTNGSQFFITTVP  138 (370)
T ss_dssp             TTEEEECCT--TTSSSSCCCBTT--------BSCBCCCCCCBCCCSTTEEEECCS----------STTCBCSCEEEESSC
T ss_pred             CcEEECCCC--CCCCCCCCCCCC--------CCCcCCCcCCcCCCCCeEEEEeeC----------CCCCCCceEEEeCCC
Confidence            999999997  457888998886        567999999999999999999998          799999999999998


Q ss_pred             CCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       215 ~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                        ++|||++|+|||+|++||+||++|++++++                           .++|.++|+|.+||++...
T Consensus       139 --~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~---------------------------~~~P~~~v~I~~~g~l~~~  187 (370)
T 1ihg_A          139 --TPHLDGKHVVFGQVIKGMGVAKILENVEVK---------------------------GEKPAKLCVIAECGELKEG  187 (370)
T ss_dssp             --CGGGTTTSCEEEEEEECHHHHHHHHTSCEE---------------------------TTEESSCEEEEEEEEECTT
T ss_pred             --CcccCCCceEEEEEecCHHHHHHHHcCCCC---------------------------CCccceeEEEEEEEEeccC
Confidence              999999999999999999999999999875                           2799999999999999763

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=2.5e-45  Score=326.04  Aligned_cols=150  Identities=23%  Similarity=0.378  Sum_probs=137.5

Q ss_pred             ccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCC
Q 021845           93 VPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPN  172 (306)
Q Consensus        93 t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de  172 (306)
                      |++|+|+||||.+.||+||+||++||+. +||+|+.||||+++||||+||+   .+++.+|.+++        +..|++|
T Consensus        18 T~~G~I~ieL~~d~aP~tv~NF~~L~~~-g~Ydg~~FhRVi~~F~iQgGd~---~~~g~gg~si~--------g~~f~dE   85 (203)
T 2k7n_A           18 TSMGIIVLELYWKHAPKTCKNFAELARR-GYYNGTKFHRIIKDFMIQGGDP---TGTGRGGASIY--------GKQFEDE   85 (203)
T ss_dssp             ESSCEEEEEECTTTCTTHHHHHHHHHHH-TCGGGCEEEEEETTTEEEEECS---SSSSSCCCTTS--------CSCBCCC
T ss_pred             eCCCcEEEEEccCCCcHHHHHHHHHHhc-CccCCCEEEEEeCCcEEEcCCC---CCCCCCCCccC--------CCccccc
Confidence            3569999999999999999999999999 9999999999999999999997   56777888776        4568888


Q ss_pred             c-ccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchh
Q 021845          173 A-FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSER  251 (306)
Q Consensus       173 ~-~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~  251 (306)
                      . ..++|+++|+|+|||.          +||+++|||||++.+  ++|||++|+|||||++|||||++|+++++++    
T Consensus        86 ~~~~l~h~~~G~lsMAn~----------gpnsngSQFFIt~~~--~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~----  149 (203)
T 2k7n_A           86 LHPDLKFTGAGILAMANA----------GPDTNGSQFFVTLAP--TQWLDGKHTIFGRVCQGIGMVNRVGMVETNS----  149 (203)
T ss_dssp             CCCSSCCCSSCEEEEEES----------STTCEEEEEEEESSC--CCSSTTTSCEEEEEESCHHHHHHHHSCCEEE----
T ss_pred             ccccccCCCCeEEEEeeC----------CCCCcccEEEEEcCC--CCccCCCeeEEEEEEcCHHHHHHHHcCCcCC----
Confidence            7 4799998999999997          799999999999998  9999999999999999999999999998863    


Q ss_pred             hhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          252 IQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       252 ~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                                            .++|.++|+|.+|++++..
T Consensus       150 ----------------------~~~P~~~V~I~~~~v~~~~  168 (203)
T 2k7n_A          150 ----------------------QDRPVDDVKIIKAYPSGGG  168 (203)
T ss_dssp             ----------------------TTEECCCCBEEEEEECCCC
T ss_pred             ----------------------CCCcCCCeEEEEEEEEecC
Confidence                                  4799999999999999885

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=1.2e-45  Score=325.68  Aligned_cols=146  Identities=24%  Similarity=0.413  Sum_probs=131.3

Q ss_pred             CccceeEEEEecCCCCchHHHHHHHHhcc--------------CccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCC
Q 021845           92 PVPLGRLIIGLYGHLAPITVSNFKAMCSS--------------RSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHP  157 (306)
Q Consensus        92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~--------------~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~  157 (306)
                      .|+.|+|+||||.+.||+||+||++||++              .++|+|+.||||+++|||||||+   .++|.+|.   
T Consensus        29 ~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~---~g~G~gg~---  102 (191)
T 1w74_A           29 HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDP---TGTGRGGP---  102 (191)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCT---TSSSSCCS---
T ss_pred             EecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCC---CCCCCCCC---
Confidence            56789999999999999999999999931              27999999999999999999997   55555552   


Q ss_pred             CCCCCCCCCCCCCCC-cccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEc--CH
Q 021845          158 PLDFLPPNTDTLRPN-AFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQ--GL  234 (306)
Q Consensus       158 ~~~~~~~~g~~~~de-~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~--Gm  234 (306)
                              +..|+|| ++.++|+++|+|||||.          +||+|+||||||+.+  ++|||++|+|||||++  ||
T Consensus       103 --------g~~f~dE~~~~l~h~~~G~lsMAn~----------gpntngSQFFIt~~~--~~~LDg~~tVFG~Vv~~~Gm  162 (191)
T 1w74_A          103 --------GYKFADEFHPELQFDKPYLLAMANA----------GPGTNGSQFFITVGK--TPHLNRRHTIFGEVIDAESQ  162 (191)
T ss_dssp             --------SCCBCCCCCTTCCSCSSSEEEECCS----------STTCBSSCEEEESSC--CGGGTTTSCEEEEECSHHHH
T ss_pred             --------CCccccccccCCCcCCCcEEEEeeC----------CCCCccceEEEEcCC--CcccCCCeeEEEEEEECCCH
Confidence                    4668888 46899999999999998          799999999999998  9999999999999999  99


Q ss_pred             HHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          235 DVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       235 dVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      |||++|++++++.                          +++|.++|+|.+|+++
T Consensus       163 dvv~~I~~~~t~~--------------------------~~~P~~~v~I~~~~i~  191 (191)
T 1w74_A          163 RVVEAISKTATDG--------------------------NDRPTDPVVIESITIS  191 (191)
T ss_dssp             HHHHHHHTSCBCT--------------------------TSCBSSCCEEEEEEEC
T ss_pred             HHHHHHHcCCcCC--------------------------CCCcCCCeEEEEEEEC
Confidence            9999999999874                          5899999999999985

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=2.7e-45  Score=322.01  Aligned_cols=148  Identities=26%  Similarity=0.426  Sum_probs=134.0

Q ss_pred             cceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCc
Q 021845           94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNA  173 (306)
Q Consensus        94 ~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~  173 (306)
                      ++|+|+||||.+.||+||+||++||+. ++|+|+.||||+++|||||||+   .+++.+|.+++        +..|++|.
T Consensus        32 ~~G~I~ieL~~~~aP~tv~NF~~L~~~-g~Y~g~~FhRvi~~f~iQgGd~---~~~g~gg~si~--------g~~~~dE~   99 (185)
T 2hq6_A           32 TAGDIDIELWSKEAPKACRNFIQLCLE-AYYDNTIFHRVVPGFIVQGGDP---TGTGSGGESIY--------GAPFKDEF   99 (185)
T ss_dssp             TTEEEEEEEBTTTCHHHHHHHHHHHHT-TTTTTEECCEEETTTEEEECCT---TSSSSCCCCTT--------SSCBCCCC
T ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhhc-CccCCCEEEEEECCCEEEcCCC---CCCCCCCCccc--------CCcccccc
Confidence            459999999999999999999999999 9999999999999999999997   56777888776        45688887


Q ss_pred             c-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHH--HHHHcCCCCCCch
Q 021845          174 F-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVV--AAIASIPTYKPSE  250 (306)
Q Consensus       174 ~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl--~kI~~~~t~~~~~  250 (306)
                      . .++|+++|+|||||.          ++|+++|||||++++  +++||++|+|||||+ ||+|+  ++|+++++++   
T Consensus       100 ~~~l~h~~~G~lsMA~~----------g~~s~gSQFFIt~~~--~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~---  163 (185)
T 2hq6_A          100 HSRLRFNRRGLVAMANA----------GSHDNGSQFFFTLGR--ADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDD---  163 (185)
T ss_dssp             BTTBCSCSSSEEEECCS----------STTCBCSCEEEESSC--CGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCT---
T ss_pred             ccCcccCCCeEEEEccC----------CCCCccceEEEECCC--CCccCCCceEEEEEE-eCeeehhhHHhhCCcCC---
Confidence            5 689999999999998          799999999999998  999999999999999 88774  6888888864   


Q ss_pred             hhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          251 RIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       251 ~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                                             +++|.++|+|.+|+++.++
T Consensus       164 -----------------------~~~P~~~v~I~~~~v~~~P  182 (185)
T 2hq6_A          164 -----------------------DERPHNPHKIKSCEVLFNP  182 (185)
T ss_dssp             -----------------------TSCBSSCCEEEEEEEEECT
T ss_pred             -----------------------CCCCCCCeEEEEEEEeCCC
Confidence                                   5899999999999999884

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=2.2e-44  Score=310.89  Aligned_cols=152  Identities=24%  Similarity=0.375  Sum_probs=130.3

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      ..|++|+|+||||.+.||+||+||++||+. ++|+|+.||||+++|||||||+  ..+.   |.+++        +..|+
T Consensus         4 l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~-g~Y~g~~FhRvi~~f~iQgGd~--~~~~---g~~~~--------g~~~~   69 (164)
T 1lop_A            4 FHTNHGDIVIKTFDDKAPETVKNFLDYCRE-GFYNNTIFHRVINGFMIQGGGF--EPGM---KQKAT--------KEPIK   69 (164)
T ss_dssp             EEETTEEEEEEECTTTSHHHHHHHHHHHHT-TTTTTEECCEEETTTEEEESSE--ETTT---EECCC--------CCCBC
T ss_pred             EEeCCCCEEEEEeCCCCcHHHHHHHHHHhc-CCCCCCEEEEEeCCceEecCCc--ccCC---CcCCC--------CCccc
Confidence            478899999999999999999999999999 9999999999999999999997  2222   33333        46688


Q ss_pred             CCccc-ccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCC--------CcEEEEEEcCHHHHHHHH
Q 021845          171 PNAFL-LKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNK--------NIVFGTVLQGLDVVAAIA  241 (306)
Q Consensus       171 de~~~-l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~--------~tVFGrVv~GmdVl~kI~  241 (306)
                      +|... ++| ++|+|||||.+         +|||++|||||++.+  .+|||++        |+|||||++|||||++|+
T Consensus        70 dE~~~~l~~-~~G~lsmA~~~---------~p~s~gSQFfI~~~~--~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~  137 (164)
T 1lop_A           70 NEANNGLKN-TRGTLAMARTQ---------APHSATAQFFINVVD--NDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIK  137 (164)
T ss_dssp             CCCCSSCCC-CTTEEEECCCS---------STTCBCSCEEEESSC--CGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHH
T ss_pred             ccccccccc-CccEEEEeecC---------CCCCccceEEEEcCC--ccccCCccccccCCceEEEEEEecCHHHHHHHH
Confidence            88764 666 58999999863         799999999999998  9999998        999999999999999999


Q ss_pred             cCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          242 SIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       242 ~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                      +++++..              |+        .+++|.++|+|.+|++++
T Consensus       138 ~~~t~~~--------------~~--------~~~~P~~~v~I~~~~v~~  164 (164)
T 1lop_A          138 GVATGRS--------------GM--------HQDVPKEDVIIESVTVSE  164 (164)
T ss_dssp             TSCEEEE--------------TT--------EEEEESSCCEEEEEEECC
T ss_pred             hCCcCCc--------------cc--------cCCCcCCCeEEEEEEEeC
Confidence            9988620              11        137999999999999874

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=8.7e-44  Score=307.68  Aligned_cols=151  Identities=26%  Similarity=0.421  Sum_probs=127.5

Q ss_pred             ccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCC
Q 021845           93 VPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPN  172 (306)
Q Consensus        93 t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de  172 (306)
                      |++|+|+||||.+.||+||+||++||+. +||+|+.||||+++|||||||+   ...+  +...+        +..|.+|
T Consensus        11 t~~G~i~ieL~~~~aP~t~~NF~~L~~~-g~Y~g~~FhRvi~~f~iQgGd~---~~~~--~~~~~--------g~~~~dE   76 (166)
T 1v9t_A           11 TSAGNIELELDKQKAPVSVQNFVDYVNS-GFYNNTTFHRVIPGFMIQGGGF---TEQM--QQKKP--------NPPIKNE   76 (166)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHT-TTTTTCBEEEEETTTEEEESSB---CTTC--CBCCC--------CCCBCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHhcc-CCCCCCEEEEEECCcEEEcCCc---CcCC--CCCCC--------CCccccc
Confidence            4569999999999999999999999999 8999999999999999999997   2221  11111        4568888


Q ss_pred             cccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCC-----CcEEEEEEcCHHHHHHHHcCCCCC
Q 021845          173 AFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNK-----NIVFGTVLQGLDVVAAIASIPTYK  247 (306)
Q Consensus       173 ~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~-----~tVFGrVv~GmdVl~kI~~~~t~~  247 (306)
                      .....|+++|+|||||.+         +|||++|||||++.+  .+|||++     |+|||||++|||||++|++++++.
T Consensus        77 ~~~~l~~~~G~lsmA~~~---------~p~t~gSQFfI~~~~--~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~  145 (166)
T 1v9t_A           77 ADNGLRNTRGTIAMARTA---------DKDSATSQFFINVAD--NAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHD  145 (166)
T ss_dssp             GGGSCCCCTTEEEECCCS---------STTCBCSCEEEESSC--CGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEE
T ss_pred             ccccccCCceEEEEeecC---------CCCCccceEEEEeCC--ccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCC
Confidence            876556668999999974         699999999999998  9999998     999999999999999999998863


Q ss_pred             CchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          248 PSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       248 ~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                      .              |        ...++|.++|+|.+|++++
T Consensus       146 ~--------------~--------~~~~~P~~~v~I~~~~v~~  166 (166)
T 1v9t_A          146 V--------------G--------PYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             E--------------T--------TEEEEESSCCBEEEEEECC
T ss_pred             C--------------C--------ccCCCcCCCeEEEEEEEeC
Confidence            0              0        0137899999999999874

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=7.2e-44  Score=322.82  Aligned_cols=163  Identities=20%  Similarity=0.304  Sum_probs=134.4

Q ss_pred             ccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCC
Q 021845           93 VPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPN  172 (306)
Q Consensus        93 t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de  172 (306)
                      |++|+|+||||.+.||+||+||++||+. +||+|+.||||+++|||||||+   .++|.+|.+++.      .+..|++|
T Consensus        28 T~~G~I~ieL~~d~aP~tv~NF~~L~~~-g~Ydgt~FhRVi~~FmiQgGdp---~~~G~Gg~si~~------~g~~f~dE   97 (232)
T 3bkp_A           28 TSLGDLDVELWARECPLACRNFVQLCLE-GYYVNTIFHRVVKDFIVQGGDP---TGTGRGGADTTF------DGKPFDVE   97 (232)
T ss_dssp             ETTEEEEEEEBTTTCHHHHHHHHHHHHH-TTTTTCBEEEEETTTEEEECCT---TSSSSCCCCCTT------TTCCBCCC
T ss_pred             ECCCcEEEEEcCCCCcHHHHHHHHHhhc-CccCCCEEEEEeCCCEEEcCCC---CCCCCCCCcccc------CCCccCCc
Confidence            3469999999999999999999999999 9999999999999999999997   567778887762      14568888


Q ss_pred             cc-cccCCCceEEEEecCCCCC----CCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHH--HHHHHcCCC
Q 021845          173 AF-LLKHSRGGVVSLCLSENDD----DPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDV--VAAIASIPT  245 (306)
Q Consensus       173 ~~-~l~h~~~G~lsma~~~~~~----~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdV--l~kI~~~~t  245 (306)
                      .. .++|+++|+|||||.+..+    ++..+..+++++||||||+++  ++|||++|+|||||+ ||+|  |++|+++++
T Consensus        98 ~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~--~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t  174 (232)
T 3bkp_A           98 THPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLAR--ADVLNNAYTLFGKVT-GHTLYNLMKFNDLEV  174 (232)
T ss_dssp             CCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSC--CGGGTTTSCEEEEEC-GGGHHHHHHHTTSCB
T ss_pred             cccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCC--CcccCCCccEEEEEE-eCchHHHHHHHcCCc
Confidence            75 6899999999999984100    000000017999999999998  999999999999999 7765  899999998


Q ss_pred             CCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccCCC
Q 021845          246 YKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPN  294 (306)
Q Consensus       246 ~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~~~  294 (306)
                      +.                          +++|.++|+|.+|+++.++..
T Consensus       175 ~~--------------------------~~~P~~~i~I~~~~vl~dPf~  197 (232)
T 3bkp_A          175 GK--------------------------EDRPMTPPFIKSVDVLWNPFE  197 (232)
T ss_dssp             CG--------------------------GGCBSSCCBEEEEEEEECCCT
T ss_pred             CC--------------------------CCCcCCCeEEEEEEEEcCChh
Confidence            74                          489999999999999998543

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=1.9e-43  Score=305.78  Aligned_cols=151  Identities=23%  Similarity=0.306  Sum_probs=127.0

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      .+|++|+|+||||.+.||+||+||++||++ +||+|+.||||+++|||||||+  ....   +...+        +..+.
T Consensus         8 l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~-g~Y~g~~FhRvi~~f~iQgGd~--~~~~---~~~~~--------~~~~~   73 (167)
T 3s6m_A            8 LHTNHGVIKLELDEAKAPKTVENFLNYVKK-GHYDGTIFHRVINGFMIQGGGF--EPGL---KQKPT--------DAPIA   73 (167)
T ss_dssp             EEETTEEEEEEECTTTCHHHHHHHHHHHHH-TTTTTEECCEEETTTEEEESSE--ETTT---EECCC--------CCCBC
T ss_pred             EEeCCceEEEEEeCCCCcHHHHHHHHHhhh-cccCCCEeEEecCCcEEEeccc--cCCC---CCCCC--------CCccC
Confidence            467889999999999999999999999999 9999999999999999999997  2221   11111        35577


Q ss_pred             CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCC--------CcEEEEEEcCHHHHHHHH
Q 021845          171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNK--------NIVFGTVLQGLDVVAAIA  241 (306)
Q Consensus       171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~--------~tVFGrVv~GmdVl~kI~  241 (306)
                      +|.. .++| ++|+|||||.+         +|||++|||||++.+  .+|||++        |+|||||++|||||++|+
T Consensus        74 ~E~~~~l~~-~~G~lsmA~~~---------~p~t~gSQFfI~~~~--~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~  141 (167)
T 3s6m_A           74 NEANNGLKN-DTYTIAMARTN---------DPHSATAQFFINVND--NEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIK  141 (167)
T ss_dssp             CCGGGCCCC-CTTEEEECCCS---------STTCBCSCEEEESSC--CGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHT
T ss_pred             CcccccccC-CccEEEEecCC---------CCCCccceEEEEcCC--chhcCCcccccCCCCceEEEEEEcCHHHHHHHH
Confidence            7754 4555 68999999953         799999999999998  8999998        999999999999999999


Q ss_pred             cCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          242 SIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       242 ~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      +++++..              |        ...++|+++|+|.+|.+|
T Consensus       142 ~~~t~~~--------------~--------~~~~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          142 AVKTGSK--------------G--------FHQDVPNDDVVIEKAVVV  167 (167)
T ss_dssp             TSCBBC-------------------------CBTCBSSCCEEEEEEEC
T ss_pred             cCCcCCC--------------c--------ccCCCcCCCeEEEEEEEC
Confidence            9999741              0        013899999999999886

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=3e-37  Score=294.97  Aligned_cols=137  Identities=18%  Similarity=0.200  Sum_probs=111.6

Q ss_pred             ccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCC--------ccCCCC-----
Q 021845           93 VPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLG--------ELHPPL-----  159 (306)
Q Consensus        93 t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g--------~s~~~~-----  159 (306)
                      ++.|+|+|+||.+.||+||+||++||+. +||+|+.|||| +||||||||+   .+++.++        ..++..     
T Consensus       185 ~~~G~I~IeL~~d~AP~Tv~NFl~L~~~-GfYdGt~FHRV-~gFmIQgGDp---~g~G~G~~~~~~g~~~~iP~E~~~~G  259 (369)
T 3rfy_A          185 IEDCVFRIVLDGYNAPVTAGNFVDLVER-HFYDGMEIQRS-DGFVVQTGDP---EGPAEGFIDPSTEKTRTVPLEIMVTG  259 (369)
T ss_dssp             CSEEEEEEEEETTTCHHHHHHHHHHHHT-TTTTTEECEEE-EEEEECCCCC---CCCCSCCCSCCCCCCCSSSSSSCSSS
T ss_pred             ccceEEEEEEeCCCCcHHHHHHHHHhhc-CCcCCCeeeee-CCeeEecCCC---CCCCCCccCcccCcCcccCccccccC
Confidence            4699999999999999999999999999 99999999999 9999999998   3444331        111100     


Q ss_pred             CCCCCCCCCCCCCcc-----cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCC-----CCCCCCCCCCcEEEE
Q 021845          160 DFLPPNTDTLRPNAF-----LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP-----GPCPQLDNKNIVFGT  229 (306)
Q Consensus       160 ~~~~~~g~~~~de~~-----~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~-----~~~p~LDg~~tVFGr  229 (306)
                      ...+..+..|++|++     .++|+++|+|||||.++        +|||++||||||+++     .+.+|||++|+||||
T Consensus       260 ~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~--------gPnSngSQFFItl~d~~L~~~~~~~LDgkytVFG~  331 (369)
T 3rfy_A          260 EKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEF--------ENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGY  331 (369)
T ss_dssp             SCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCC--------CCCCSSCCCCCCCEEEEECSCCCSSSCSCEEEEEE
T ss_pred             CCCCcCCCccccccccccccccccCCCceEEEeecCC--------CCCCccceEEEEecccccCCCCCcccCCCeeEEEE
Confidence            012233566777754     68899999999999732        799999999999942     248999999999999


Q ss_pred             EEcCHHHHHHHHc
Q 021845          230 VLQGLDVVAAIAS  242 (306)
Q Consensus       230 Vv~GmdVl~kI~~  242 (306)
                      |++|||||++|++
T Consensus       332 VveGmdVVdkI~~  344 (369)
T 3rfy_A          332 VTDNEDFLADLKV  344 (369)
T ss_dssp             EEESTTGGGGCCT
T ss_pred             EecCHHHHHHHhC
Confidence            9999999999988

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=90.55  E-value=3.1  Score=35.61  Aligned_cols=37  Identities=16%  Similarity=0.097  Sum_probs=26.7

Q ss_pred             ce-eEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCC
Q 021845           95 LG-RLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPG  135 (306)
Q Consensus        95 ~G-rIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~  135 (306)
                      .| .++.+|..+.||+||+.|+++-    =|.+..+|-..-+
T Consensus        31 ~g~~~~A~Lldd~APkTcaA~~~~L----P~~~~viHarwSG   68 (188)
T 3kop_A           31 RGVTCKALLLDDVAPRTSKAVWDAL----PQSSQVFHGKYAR   68 (188)
T ss_dssp             TTEEEEEEECTTTSHHHHHHHHHHC----CEEEECEECSSSS
T ss_pred             CCeEEEEEEccccChHHHHHHHHhC----CCCcceEEEEEec
Confidence            35 4899999999999999999963    3445555544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	306
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	1e-18
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	8e-18
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	8e-18
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	3e-17
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	8e-17
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	1e-15
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	2e-15
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	3e-15
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	4e-15
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	7e-15
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	1e-14
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	2e-14
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	1e-13
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	1e-13
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	2e-13
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	3e-11
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	5e-11
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	8e-11
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	1e-10
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	1e-09
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-09
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	3e-08

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score = 79.4 bits (195), Expect = 1e-18
 Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 51/196 (26%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLG +   L+  + P T +NF+A+C+      Y  +  H++ P      G    +  +  
Sbjct: 14  PLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGG--DFTAGNGT 71

Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N        F LKH++ G++S+              P+    +F IT
Sbjct: 72  GGKSIYGAKFADEN--------FQLKHNKPGLLSM----------ANAGPNTNGSQFFIT 113

Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
                   LD K++VFG V+ G++VV AI +  +                          
Sbjct: 114 --TVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGS------------------------ 147

Query: 272 AIWNRPLKTVYISDCG 287
               +P   + I+ CG
Sbjct: 148 ---GKPRSRIEIAKCG 160

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.0 bits (191), Expect = 8e-18
 Identities = 40/207 (19%), Positives = 73/207 (35%), Gaps = 59/207 (28%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL----------YRNTLVHKIFPGQFFLAGRQ 143
            +GR+++ L+  + P T  NF+A+C+              ++    H+I        G  
Sbjct: 27  RVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDF 86

Query: 144 GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHY 203
               ++   GE      F   N        F  KH + G++S+  + ++ +         
Sbjct: 87  S--NQNGTGGESIYGEKFEDEN--------FHYKHDKEGLLSMANAGSNTNG-------- 128

Query: 204 RNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIG 263
                       P P LD K++VFG V++G+ V   + ++                    
Sbjct: 129 ----SQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG---------------- 168

Query: 264 DKRADTARAIWNRPLKTVYISDCGELK 290
                       +P K   I++CGELK
Sbjct: 169 -----------EKPAKLCVIAECGELK 184

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score = 77.2 bits (189), Expect = 8e-18
 Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 58/206 (28%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL---------YRNTLVHKIFPGQFFLAGRQG 144
             GR+++ LY  + P T  NF+A+C+  +          ++ +  H+I P      G   
Sbjct: 16  ASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDF- 74

Query: 145 LSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
              R +  G      +  P      +       H+  GV+S+  +           P+  
Sbjct: 75  --TRGNGTGGESIYGEKFPDENFKEK-------HTGPGVLSMANA----------GPNTN 115

Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGD 264
             +F + T       LD K++VFG V++GLDVV A+ S  +                   
Sbjct: 116 GSQFFLCTVK--TEWLDGKHVVFGRVVEGLDVVKAVESNGSQS----------------- 156

Query: 265 KRADTARAIWNRPLKTVYISDCGELK 290
                      +P+K   I+DCG+LK
Sbjct: 157 ----------GKPVKDCMIADCGQLK 172

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score = 75.3 bits (184), Expect = 3e-17
 Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 57/204 (27%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMC-------SSRSLYRNTLVH-KIFPGQFFLAGRQGL 145
             GR+I  L+  + P T  NF+A+C         ++L+    +  +I P      G    
Sbjct: 16  NAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDI-- 73

Query: 146 SRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
           +  +   GE      F   N        F +KH + G++S+              P+  +
Sbjct: 74  TNGNGSGGESIYGRSFTDEN--------FNMKHDQPGLLSMA----------NAGPNTNS 115

Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDK 265
            +F IT  P  CP LD K++VFG V++G++VV  +                         
Sbjct: 116 SQFFITLVP--CPWLDGKHVVFGKVIEGMNVVREMEKEGAKS------------------ 155

Query: 266 RADTARAIWNRPLKTVYISDCGEL 289
                        ++V I+DCGEL
Sbjct: 156 ---------GYVKRSVVITDCGEL 170

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score = 74.5 bits (182), Expect = 8e-17
 Identities = 48/206 (23%), Positives = 74/206 (35%), Gaps = 58/206 (28%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS----------LYRNTLVHKIFPGQFFLAGRQ 143
             GR+++ LY  +AP T +NF  +C+  +           Y+ +  H++        G  
Sbjct: 16  LAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDF 75

Query: 144 GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHY 203
                           D             F++KH    VVS+              P+ 
Sbjct: 76  TKGDGTGGESIYGGMFD----------DEEFVMKHDEPFVVSMANK----------GPNT 115

Query: 204 RNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIG 263
              +F ITT   P P L+N ++VFG V+ G +VV  I  + T                  
Sbjct: 116 NGSQFFITT--TPAPHLNNIHVVFGKVVSGQEVVTKIEYLKT------------------ 155

Query: 264 DKRADTARAIWNRPLKTVYISDCGEL 289
           + +        NRPL  V I +CGEL
Sbjct: 156 NSK--------NRPLADVVILNCGEL 173

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score = 71.0 bits (173), Expect = 1e-15
 Identities = 48/226 (21%), Positives = 74/226 (32%), Gaps = 62/226 (27%)

Query: 68  IFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSR--SLYR 125
           +F D       + P GT  T       +GR++  L+    P T  NF+ +C       YR
Sbjct: 4   VFFDVE-----YAPVGTAET------KVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYR 52

Query: 126 NTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVS 185
            +  H+I P      G    +R +   G             D      F  KH + G++S
Sbjct: 53  ESTFHRIIPNFMIQGG--DFTRGNGTGGR--------SIYGDKFADENFSRKHDKKGILS 102

Query: 186 LCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQ--GLDVVAAIASI 243
           +  +           P+    +F IT        LD K++VFG V       VV  I ++
Sbjct: 103 MANA----------GPNTNGSQFFIT--TAVTSWLDGKHVVFGEVADEKSYSVVKEIEAL 150

Query: 244 PTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289
            +                          +   R      I +CGEL
Sbjct: 151 GS-------------------------SSGSVRSNTRPKIVNCGEL 171

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 2e-15
 Identities = 45/198 (22%), Positives = 71/198 (35%), Gaps = 51/198 (25%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           PLGR+++ L   + P T  NF+A+C+      Y+ +  H++ P     AG        + 
Sbjct: 15  PLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDF---TNHNG 71

Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G         P          F LKH   GV+S+  +  + +                 
Sbjct: 72  TGGKSIYGSRFPDEN-------FTLKHVGPGVLSMANAGPNTNG------------SQFF 112

Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
                   LD K++VFG V++G+DVV  I S  +                          
Sbjct: 113 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKS------------------------ 148

Query: 272 AIWNRPLKTVYISDCGEL 289
               R  K + I+DCG+L
Sbjct: 149 ---GRTSKKIVITDCGQL 163

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 3e-15
 Identities = 40/197 (20%), Positives = 67/197 (34%), Gaps = 51/197 (25%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
           P GR+ + L   + P+T  NF+ +C+      ++ +  H+I P   F+      +  +  
Sbjct: 14  PAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIP--QFMCQGGDFTNHNGT 71

Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
            G+      F   N         LL  +  G                  P+    +F   
Sbjct: 72  GGKSIYGKKFDDENFILKHTGPGLLSMANSG------------------PNTNGSQF--F 111

Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
                   LD K++VFG V +GLDV+  I +  +                          
Sbjct: 112 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKD------------------------ 147

Query: 272 AIWNRPLKTVYISDCGE 288
               +P + V I+DCGE
Sbjct: 148 ---GKPKQKVIIADCGE 161

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score = 70.2 bits (171), Expect = 4e-15
 Identities = 48/230 (20%), Positives = 75/230 (32%), Gaps = 66/230 (28%)

Query: 64  ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRS- 122
           +TD ++ D  +                   P+GR++IGL+G   P T +NF  +      
Sbjct: 5   VTDRVYFDMEIGGK----------------PIGRIVIGLFGKTVPKTATNFIELAKKPKG 48

Query: 123 -LYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRG 181
             Y  +  H++        G    +R D   G       F   N        F LKH   
Sbjct: 49  EGYPGSKFHRVIADFMIQGG--DFTRGDGTGGRSIYGEKFADEN--------FKLKHYGA 98

Query: 182 GVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIA 241
           G +S+  +  D                         P LD +++VFG +L+G+DVV  I 
Sbjct: 99  GWLSMANAGAD------------TNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIE 146

Query: 242 SIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKL 291
                                GD           RP + V I+  G + +
Sbjct: 147 QTEKLP---------------GD-----------RPKQDVIIAASGHIAV 170

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 68.7 bits (167), Expect = 7e-15
 Identities = 52/228 (22%), Positives = 87/228 (38%), Gaps = 67/228 (29%)

Query: 64  ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSL 123
           +TD ++ D ++                   P+GR++IGL+G+  P TV NFK + S  + 
Sbjct: 4   VTDKVYFDITIGDE----------------PVGRVVIGLFGNDVPKTVENFKQLASGENG 47

Query: 124 --YRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRG 181
             Y+ ++ H++        G    +  D   G              T   +  L      
Sbjct: 48  FGYKGSIFHRVIRNFMIQGG--DFTNFDGTGG---------KSIYGTRFDDENLKIKHFV 96

Query: 182 GVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIA 241
           G VS+  +           P+    +F +TT P   P LD +++VFG V++G+DVV  + 
Sbjct: 97  GAVSMANA----------GPNSNGSQFFVTTAP--TPWLDGRHVVFGKVVEGMDVVKKVE 144

Query: 242 SIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289
           +  T                             ++P K V I+DCG L
Sbjct: 145 NTKTGLN--------------------------DKPKKAVKINDCGVL 166

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 1e-14
 Identities = 43/196 (21%), Positives = 67/196 (34%), Gaps = 41/196 (20%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLG 153
            +GR+ I L+  + P T  NF+  C+         +         +     +   D   G
Sbjct: 19  EVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNG 78

Query: 154 ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTG 213
           +                   F L+HS  G++S+  S           P     +F IT  
Sbjct: 79  DGTG---VASIYRGPFADENFKLRHSAPGLLSMANS----------GPSTNGCQFFITCS 125

Query: 214 PGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAI 273
              C  LD K++VFG ++ GL V+  I ++PT                            
Sbjct: 126 K--CDWLDGKHVVFGKIIDGLLVMRKIENVPTGP-------------------------- 157

Query: 274 WNRPLKTVYISDCGEL 289
            N+P   V IS CGE+
Sbjct: 158 NNKPKLPVVISQCGEM 173

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score = 68.3 bits (166), Expect = 2e-14
 Identities = 54/240 (22%), Positives = 84/240 (35%), Gaps = 67/240 (27%)

Query: 63  TITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRS 122
           ++TD +F D  +                    +GR++IGL+G++ P TV NF A+ +   
Sbjct: 5   SVTDKVFFDVRIGDK----------------DVGRIVIGLFGNVVPKTVENFVALATGEK 48

Query: 123 L--YRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSR 180
              Y+ ++ H++        G    + RD   G       F   N        F LKH  
Sbjct: 49  GYGYKGSIFHRVIKDFMIQGG--DFTARDGTGGMSIYGETFPDEN--------FKLKHYG 98

Query: 181 GGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAI 240
            G VS+  +  D +                         LD K++VFG VL G+ VV +I
Sbjct: 99  IGWVSMANAGPDTNG------------SQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSI 146

Query: 241 ASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK-PNATTKP 299
               T                  D          +RPL    I + G++ +K P     P
Sbjct: 147 ELQAT------------------DGH--------DRPLTDCTIVNSGKIDVKTPFVVEVP 180

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 66.1 bits (160), Expect = 1e-13
 Identities = 40/205 (19%), Positives = 68/205 (33%), Gaps = 56/205 (27%)

Query: 94  PLGRLIIGLYGHLAPITVSNFKAMCSSR-------SLYRNTLVHKIFPGQFFLAGRQGLS 146
            LG+    L+ ++ P T  NF+  C+           Y+NT+ H++        G     
Sbjct: 29  FLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINH 88

Query: 147 RRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNV 206
                L       D             F +KH + G++S+              P+    
Sbjct: 89  NGSGSLSIYGEKFD----------DENFDIKHDKEGLLSMA----------NSGPNTNGC 128

Query: 207 EFLITTGPGPCPQLDNKNIVFGTVLQG--LDVVAAIASIPTYKPSERIQKYNELAAFIGD 264
           +F ITT    C  LD KN+VFG ++    L ++  I ++                     
Sbjct: 129 QFFITT--KKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSV-----------------TP 169

Query: 265 KRADTARAIWNRPLKTVYISDCGEL 289
                      +P   + + +CGEL
Sbjct: 170 YI--------YKPKIPINVVECGEL 186

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 1e-13
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 23/157 (14%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
            G L + L+  L P T  NF  +C  +  Y +  +       F + G  G        GE
Sbjct: 9   KGDLNLELHCDLTPKTCENFIRLC--KKHYYDGTIFHRSIRNFVIQG--GDPTGTGTGGE 64

Query: 155 LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP 214
            +    F              L H+  G++S+  S  + +                    
Sbjct: 65  SYWGKPFKDEFR-------PNLSHTGRGILSMANSGPNSNR------------SQFFITF 105

Query: 215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSER 251
             C  LD K+ +FG V+ G DV+ A+ ++ +   ++R
Sbjct: 106 RSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDR 142

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score = 64.9 bits (157), Expect = 2e-13
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 26/161 (16%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
           LG   + LY + +P T  NF  +C     + +  +       F + G             
Sbjct: 25  LGDFEVELYWYHSPKTCLNFYTLCEMG--FYDNTIFHRVIPNFVIQGGDPTGTGKGGKSI 82

Query: 155 LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP 214
                +               LKH+  G++S+  +           P+  + +F IT   
Sbjct: 83  YGEYFEDEINKE---------LKHTGAGILSMSNN----------GPNTNSSQFFIT--L 121

Query: 215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPT---YKPSERI 252
            P P LD K+ +F  V + +  +  IAS+ T    KP   +
Sbjct: 122 APLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDL 162

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 3e-11
 Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 27/162 (16%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
           +G + I ++    P T  NF A+C   S Y N  +       F +               
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALC--ASNYYNGCIFHRNIKGFMVQTGDPTGTGRGG--- 63

Query: 155 LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP 214
                             +  LKH+  GVVS+  +           P+    +F IT   
Sbjct: 64  ------NSIWGKKFEDEYSEYLKHNVRGVVSMANN----------GPNTNGSQFFIT--Y 105

Query: 215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPT----YKPSERI 252
           G  P LD K  VFG V+ GL+ +  +  +P     Y+P   +
Sbjct: 106 GKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDV 147

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 5e-11
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 26/161 (16%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
           +G +++ LY   AP T  NF  +      Y  T  H+I    F + G  G      + G 
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELARRGY-YNGTKFHRIIK-DFMIQG--GDPTGTGRGGA 75

Query: 155 LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP 214
                 F              LK +  G++++  +           P     +F +T   
Sbjct: 76  SIYGKQFEDELH-------PDLKFTGAGILAMANA----------GPDTNGSQFFVT--L 116

Query: 215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPT---YKPSERI 252
            P   LD K+ +FG V QG+ +V  +  + T    +P + +
Sbjct: 117 APTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDV 157

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 57.7 bits (138), Expect = 8e-11
 Identities = 36/195 (18%), Positives = 60/195 (30%), Gaps = 42/195 (21%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
            G + + L    AP++V NF    +S      T    I        G     ++     +
Sbjct: 13  AGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ----KK 68

Query: 155 LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP 214
            +PP+     N             +  G +++  + + D    +   +  +  FL     
Sbjct: 69  PNPPIKNEADNG----------LRNTRGTIAMARTADKDSATSQFFINVADNAFL----- 113

Query: 215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIW 274
               Q D    VFG V++G+DV   I+ +PT                             
Sbjct: 114 -DHGQRDFGYAVFGKVVKGMDVADKISQVPT----------------------HDVGPYQ 150

Query: 275 NRPLKTVYISDCGEL 289
           N P K V I     L
Sbjct: 151 NVPSKPVVILSATVL 165

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 56.9 bits (136), Expect = 1e-10
 Identities = 43/161 (26%), Positives = 58/161 (36%), Gaps = 26/161 (16%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
           +G + I L+      TV NF     +   Y N  +       F +             GE
Sbjct: 10  MGDIHISLFYKECKKTVQNFSVHSING--YYNNCIFHRVIKHFMVQTGDPSGDGTG--GE 65

Query: 155 LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP 214
                +F     D L        HS+  +VS+              P+    +F ITT  
Sbjct: 66  SIWGNEFEDEFFDHLN-------HSKPFMVSMA----------NCGPNTNGSQFFITT-- 106

Query: 215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPT---YKPSERI 252
            PCP LD K+ VFG V QG  +V  I  + T    KP E I
Sbjct: 107 VPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDI 147

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 1e-09
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 27/162 (16%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
           +G +   L+    P TV NF      R+ Y N          F +               
Sbjct: 18  MGDIHTKLFPVECPKTVENFCVHS--RNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESI 75

Query: 155 LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP 214
                +    +T          +H R   +S+  + ++ +            +F IT   
Sbjct: 76  WGGEFEDEFHSTL---------RHDRPYTLSMANAGSNTNGS----------QFFITV-- 114

Query: 215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPT----YKPSERI 252
            P P LDNK+ VFG V +G++VV  I+++       KP E +
Sbjct: 115 VPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDV 156

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 44/177 (24%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMC--------------SSRSLYRNTLVHKIFPGQFFLA 140
            G + I L+G+ AP TV+NF  +                S   Y   + H++  G     
Sbjct: 12  RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMI-- 69

Query: 141 GRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLD 200
             QG     +  G                       +  +  ++++              
Sbjct: 70  --QGGDPTGTGRGGPGYKFADEFHPEL---------QFDKPYLLAMA----------NAG 108

Query: 201 PHYRNVEFLITTGPGPCPQLDNKNIVFGTVL--QGLDVVAAIASIPT---YKPSERI 252
           P     +F IT   G  P L+ ++ +FG V+  +   VV AI+   T    +P++ +
Sbjct: 109 PGTNGSQFFIT--VGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPV 163

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 17/151 (11%)

Query: 95  LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
            G ++I  +   AP TV NF   C     Y NT+ H++  G     G      +     E
Sbjct: 8   HGDIVIKTFDDKAPETVKNFLDYCREGF-YNNTIFHRVINGFMIQGGGFEPGMKQKATKE 66

Query: 155 LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP 214
                         ++  A     +  G +++  ++       +   +  + +FL  +G 
Sbjct: 67  -------------PIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113

Query: 215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
                      VF  V+ G+D V  I  + T
Sbjct: 114 SLQ---GWGYCVFAEVVDGMDEVDKIKGVAT 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	306
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=2.6e-45  Score=316.28  Aligned_cols=161  Identities=31%  Similarity=0.583  Sum_probs=144.8

Q ss_pred             CceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc---------CccccCceeEeecCC
Q 021845           65 TDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS---------RSLYRNTLVHKIFPG  135 (306)
Q Consensus        65 ~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~---------~~~Y~gt~FhRVi~~  135 (306)
                      +++|||||+|                +++++|+|+||||.+.||+||+||++||++         .++|+++.||||+++
T Consensus         3 ~~~v~~Di~i----------------~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~   66 (172)
T d2igva1           3 RSKVFFDITI----------------GGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPN   66 (172)
T ss_dssp             CCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETT
T ss_pred             CCEEEEEEEE----------------CCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEec
Confidence            6899999999                899999999999999999999999999974         268999999999999


Q ss_pred             eEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCC
Q 021845          136 QFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG  215 (306)
Q Consensus       136 f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~  215 (306)
                      +++|+|+.  ..+++.++..++        +..+++|.....|+.+|+|+|++.          ++++++|||||++++ 
T Consensus        67 ~~i~~G~~--~~~~~~~~~~~~--------~~~~~~e~~~~~~~~~G~lsma~~----------~~~~~~sqFfIt~~~-  125 (172)
T d2igva1          67 FMIQGGDF--TRGNGTGGESIY--------GEKFPDENFKEKHTGPGVLSMANA----------GPNTNGSQFFLCTVK-  125 (172)
T ss_dssp             TEEEECCT--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECCS----------STTCBSSCEEEESSC-
T ss_pred             ceEEcCCc--cCCCCCCCcccC--------CCccCccccccccCCCcEEEEeec----------CCCCcCceeEeeecC-
Confidence            99999997  355555555443        456788888889999999999997          799999999999998 


Q ss_pred             CCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          216 PCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       216 ~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                       .++||++|+|||||++|||||++|++++++                           .++|+++|+|++||+|+
T Consensus       126 -~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~---------------------------~g~P~~~i~I~~cG~l~  172 (172)
T d2igva1         126 -TEWLDGKHVVFGRVVEGLDVVKAVESNGSQ---------------------------SGKPVKDCMIADCGQLK  172 (172)
T ss_dssp             -CGGGTTTSCEEEEEEECHHHHHHHHTTCCT---------------------------TSCCSSCEEEEEEEEEC
T ss_pred             -CcccCCceeEEEEEeccHHHHHHHHcCCCC---------------------------CCCCCCCeEEEeccccC
Confidence             999999999999999999999999998775                           48999999999999985

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-45  Score=312.71  Aligned_cols=161  Identities=30%  Similarity=0.550  Sum_probs=142.6

Q ss_pred             CceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccC--ccccCceeEeecCCeEEEcCC
Q 021845           65 TDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSR--SLYRNTLVHKIFPGQFFLAGR  142 (306)
Q Consensus        65 ~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~--~~Y~gt~FhRVi~~f~iq~Gd  142 (306)
                      +++|||||++                +++++|+|+||||.+.||+||+||++||+++  .+|+|+.||||++++++|+|+
T Consensus         2 n~~v~~Di~i----------------~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~g~   65 (164)
T d2z6wa1           2 NPLVYLDVDA----------------NGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGD   65 (164)
T ss_dssp             CCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECC
T ss_pred             CCeEEEEEEE----------------CCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCcccCCcEEEEecccceEecCC
Confidence            6799999999                7899999999999999999999999999761  379999999999999999999


Q ss_pred             CCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCC
Q 021845          143 QGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDN  222 (306)
Q Consensus       143 ~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg  222 (306)
                      .  ...++.++...+        +..+.++.+.+.|+.+|+||||+.          ++++++|||||++.+  .++||+
T Consensus        66 ~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~G~lsma~~----------~~~s~~sqFfi~~~~--~~~ldg  123 (164)
T d2z6wa1          66 F--TNHNGTGGKSIY--------GSRFPDENFTLKHVGPGVLSMANA----------GPNTNGSQFFICTIK--TDWLDG  123 (164)
T ss_dssp             T--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEESSC--CGGGTT
T ss_pred             c--cCCCCCCCcccc--------CCcCCccccccccCCccEEEEecC----------CCCCCCcceeccccC--CCcccc
Confidence            7  344444444443        355677777888888999999997          799999999999998  999999


Q ss_pred             CCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          223 KNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       223 ~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                      +|+|||||++|||||++|++++++                           .++|.++|+|++||+|.
T Consensus       124 ~ytVFG~Vv~G~dvl~~I~~~~~~---------------------------~~~P~~~i~I~~cG~l~  164 (164)
T d2z6wa1         124 KHVVFGHVIEGMDVVKKIESFGSK---------------------------SGRTSKKIVITDCGQLS  164 (164)
T ss_dssp             TSCEEEEEEECHHHHHHHHHTCCT---------------------------TSCCSSCEEEEEEEECC
T ss_pred             cceEEEEecccHHHHHHHHhCCCC---------------------------CCCCCCCEEEEeCeecC
Confidence            999999999999999999999876                           48999999999999984

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=1.2e-45  Score=321.23  Aligned_cols=173  Identities=28%  Similarity=0.527  Sum_probs=152.4

Q ss_pred             CCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccC--ccccCceeEeecCCeEEE
Q 021845           62 TTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSR--SLYRNTLVHKIFPGQFFL  139 (306)
Q Consensus        62 ~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~--~~Y~gt~FhRVi~~f~iq  139 (306)
                      |++|++|||||++                +++++|+|+||||.+.||+||+||++||+++  .+|+|+.||||+++|++|
T Consensus         3 p~~t~~vy~di~i----------------~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~y~g~~f~rv~~~~~iq   66 (182)
T d1h0pa_           3 PKVTDRVYFDMEI----------------GGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQ   66 (182)
T ss_dssp             CEEEEEEEEEEEE----------------TTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEE
T ss_pred             CCCCCeEEEEEEE----------------CCEECeEEEEEECCCCChHHHHHHHHHHHhcccCCcCCceEEEEEecceEE
Confidence            4689999999999                8999999999999999999999999999761  489999999999999999


Q ss_pred             cCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCC
Q 021845          140 AGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQ  219 (306)
Q Consensus       140 ~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~  219 (306)
                      +|+.  ..+++.++...+        +..+.++.+...|+.+|+++|++.          ++++++|||||++++  .++
T Consensus        67 ~G~~--~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~G~~~~a~~----------g~~s~~sqFfIt~~~--~~~  124 (182)
T d1h0pa_          67 GGDF--TRGDGTGGRSIY--------GEKFADENFKLKHYGAGWLSMANA----------GADTNGSQFFITTVK--TPW  124 (182)
T ss_dssp             ECCT--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEESSC--CGG
T ss_pred             cCCC--CCCCCCCCCCCC--------CCccCcccccccccCCceeeeccc----------CCCCcCccccccccc--ccc
Confidence            9997  355555555444        355777788888999999999998          799999999999998  999


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEecc-CCCCCCC
Q 021845          220 LDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKL-KPNATTK  298 (306)
Q Consensus       220 LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~-~~~~~~~  298 (306)
                      ||++|+|||||++|||||++|+++++++                          +++|+++|+|++||+|.. .|.+.++
T Consensus       125 ldg~ytvFG~Vi~G~dvl~~I~~~~~~~--------------------------~~~P~~~v~I~~cG~l~~~~p~~~~~  178 (182)
T d1h0pa_         125 LDGRHVVFGKILEGMDVVRKIEQTEKLP--------------------------GDRPKQDVIIAASGHIAVDTPFSVER  178 (182)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCEET--------------------------TTEESSCEEEEEEEEEEEEEEEECCS
T ss_pred             ccccceeEEEEeehHHHHHHHHhcCCCC--------------------------CCCCCCCEEEEECCeEeCCCCCcccc
Confidence            9999999999999999999999998875                          579999999999999996 3555444

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-45  Score=310.75  Aligned_cols=159  Identities=28%  Similarity=0.541  Sum_probs=140.4

Q ss_pred             CceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc--CccccCceeEeecCCeEEEcCC
Q 021845           65 TDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS--RSLYRNTLVHKIFPGQFFLAGR  142 (306)
Q Consensus        65 ~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~--~~~Y~gt~FhRVi~~f~iq~Gd  142 (306)
                      +++|||||++                +++.+|+|+||||.+.||+||+||++||+.  +++|+|+.||||+|+|++|+|+
T Consensus         1 np~vy~di~i----------------~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~Rv~~~~~iq~G~   64 (161)
T d2r99a1           1 NPQVYMDIKI----------------GNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGD   64 (161)
T ss_dssp             CCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECC
T ss_pred             CCEEEEEEEE----------------CCEeceEEEEEEcCCCCcHHHHHHHHhhhhccccccCCcEEEEEEEeeeEEeee
Confidence            5799999999                899999999999999999999999999963  3789999999999999999999


Q ss_pred             CCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCC
Q 021845          143 QGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDN  222 (306)
Q Consensus       143 ~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg  222 (306)
                      .  ...++.++...+        +..+.++.+.++|+++|+|+|++.          ++|+++|||||++++  .++||+
T Consensus        65 ~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~G~ls~~~~----------~~~s~~sqFfI~~~~--~~~Ldg  122 (161)
T d2r99a1          65 F--TNHNGTGGKSIY--------GKKFDDENFILKHTGPGLLSMANS----------GPNTNGSQFFLTCDK--TDWLDG  122 (161)
T ss_dssp             T--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSSSEEEECCS----------STTCBCSCEEEESSC--CGGGTT
T ss_pred             c--cCCCCCCCcccc--------Cccccccccccccccceeeeeccc----------CCCCcCcceEeccCC--ccccCC
Confidence            7  233444444433        355677788899999999999998          799999999999998  999999


Q ss_pred             CCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeE
Q 021845          223 KNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGE  288 (306)
Q Consensus       223 ~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~  288 (306)
                      +|+|||||++|||||++|+..++.                           +++|+++|+|++||+
T Consensus       123 ~~tvFG~Vv~G~dvl~~I~~~~~~---------------------------~~~P~~~i~I~~CGe  161 (161)
T d2r99a1         123 KHVVFGEVTEGLDVLRQIEAQGSK---------------------------DGKPKQKVIIADCGE  161 (161)
T ss_dssp             TSCEEEEEEECHHHHHHHHTTCCT---------------------------TCCCSSCEEEEEEEE
T ss_pred             cceEEEEEeehHHHHHHHHccCCC---------------------------CCcCCCCEEEEeCCC
Confidence            999999999999999999987654                           489999999999997

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=3.5e-45  Score=318.29  Aligned_cols=166  Identities=31%  Similarity=0.534  Sum_probs=148.6

Q ss_pred             CCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccC--ccccCceeEeecCCeEEE
Q 021845           62 TTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSR--SLYRNTLVHKIFPGQFFL  139 (306)
Q Consensus        62 ~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~--~~Y~gt~FhRVi~~f~iq  139 (306)
                      |++|++|||||++                +++++|+|+||||.+.||+||+||++||+++  ++|+|+.||||++++++|
T Consensus         4 p~~t~~vy~di~i----------------~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~Y~g~~f~rv~~~~~iq   67 (182)
T d2rmca_           4 PSVTDKVFFDVRI----------------GDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQ   67 (182)
T ss_dssp             CEEEEEEEEEEEE----------------TTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEE
T ss_pred             CccCCeEEEEEEE----------------CCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCCccccCceeeeeecCceEE
Confidence            5779999999999                8999999999999999999999999999761  479999999999999999


Q ss_pred             cCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCC
Q 021845          140 AGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQ  219 (306)
Q Consensus       140 ~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~  219 (306)
                      +|+.  ...++.++...+        +..+.++++.+.|+++|+|+|++.          ++++++|||||++++  .++
T Consensus        68 ~G~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~G~lsma~~----------~~~s~~sqFfI~~~~--~~~  125 (182)
T d2rmca_          68 GGDF--TARDGTGGMSIY--------GETFPDENFKLKHYGIGWVSMANA----------GPDTNGSQFFITLTK--PTW  125 (182)
T ss_dssp             ECCC--SSSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEESSC--CGG
T ss_pred             cCCC--CCCCCCCCCCCc--------CCcccccccccccCCCccEehhhc----------CCCccCccccccccC--Cch
Confidence            9997  244455555443        456778888889999999999997          799999999999998  899


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEecc
Q 021845          220 LDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKL  291 (306)
Q Consensus       220 LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~  291 (306)
                      ||++|+|||||++|||||++|++++++.                          +++|.++|+|.+||+|+.
T Consensus       126 ld~~~~vFG~Vi~G~dvl~~I~~~~~~~--------------------------~~~P~~~v~I~~~g~l~~  171 (182)
T d2rmca_         126 LDGKHVVFGKVLDGMTVVHSIELQATDG--------------------------HDRPLTDCTIVNSGKIDV  171 (182)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCBCT--------------------------TSCBSSCEEEEEEEEEEE
T ss_pred             hcccceEEEEEechHHHHHHHHhCCcCC--------------------------CCcCCCCeEEEEeeEEeC
Confidence            9999999999999999999999999875                          689999999999999975

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=6.4e-45  Score=312.04  Aligned_cols=162  Identities=31%  Similarity=0.578  Sum_probs=140.9

Q ss_pred             CCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCcc---ccCceeEeecCCeEE
Q 021845           62 TTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSL---YRNTLVHKIFPGQFF  138 (306)
Q Consensus        62 ~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~---Y~gt~FhRVi~~f~i  138 (306)
                      |++|++|||||++                +++++|+|+||||.+.||+||+||++||++ ++   |+|+.|||+++++++
T Consensus         2 p~~t~~V~~di~i----------------~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~-~~~~~Y~g~~f~rv~~~~~i   64 (166)
T d1xo7a_           2 PVVTDKVYFDITI----------------GDEPVGRVVIGLFGNDVPKTVENFKQLASG-ENGFGYKGSIFHRVIRNFMI   64 (166)
T ss_dssp             CCCCEEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHT-TTSCCSTTCBEEEEETTTEE
T ss_pred             CCCCCeEEEEEEE----------------CCEECcEEEEEECCCCChHHHHHHHHhhcc-cccccccCcEEEEEcCCCEE
Confidence            5789999999999                899999999999999999999999999998 55   999999999999999


Q ss_pred             EcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCC
Q 021845          139 LAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCP  218 (306)
Q Consensus       139 q~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p  218 (306)
                      |+|+.  ...++.++...+        +..++++.. ..|..+|+|+|++.          ++|+++|||||++++  ++
T Consensus        65 q~G~~--~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~G~l~~a~~----------g~~s~~sqFfIt~~~--~~  121 (166)
T d1xo7a_          65 QGGDF--TNFDGTGGKSIY--------GTRFDDENL-KIKHFVGAVSMANA----------GPNSNGSQFFVTTAP--TP  121 (166)
T ss_dssp             EECCT--TTSSSSCCCBTT--------BSCBCCCCC-CSCCCTTEEEECCS----------STTCBCSCEEEESSC--CG
T ss_pred             EeCCC--CCCCCCCCCCCC--------Ccccccccc-cccccccceeeccc----------CCCCCCCeeEEccCC--cc
Confidence            99997  344554554433        233444444 44556799999997          799999999999998  99


Q ss_pred             CCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          219 QLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       219 ~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      +||++|+|||||++|||||++|++++++.                          +++|.++|+|++||+|
T Consensus       122 ~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~--------------------------~~~P~~~i~I~~cgvl  166 (166)
T d1xo7a_         122 WLDGRHVVFGKVVEGMDVVKKVENTKTGL--------------------------NDKPKKAVKINDCGVL  166 (166)
T ss_dssp             GGTTTSCEEEEEEECHHHHHHHHTSCBCG--------------------------GGCBSSCEEEEEEEEC
T ss_pred             ccCccceeeeEEeeHHHHHHHHHcCCCCC--------------------------CCCCCCCEEEEeeEeC
Confidence            99999999999999999999999998864                          5899999999999997

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=6.6e-45  Score=313.59  Aligned_cols=162  Identities=30%  Similarity=0.564  Sum_probs=142.8

Q ss_pred             CCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCcc--------ccCceeEeecC
Q 021845           63 TITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSL--------YRNTLVHKIFP  134 (306)
Q Consensus        63 ~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~--------Y~gt~FhRVi~  134 (306)
                      +++++|||||++                +++++|+|+||||.+.||+||+||++||+. ++        |+++.|||+++
T Consensus         4 ~~np~v~~di~i----------------~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~-~~~~~~~~~~y~~~~f~rv~~   66 (173)
T d1qoia_           4 PVNPVVFFDVSI----------------GGQEVGRMKIELFADVVPKTAENFRQFCTG-EFRKDGVPIGYKGSTFHRVIK   66 (173)
T ss_dssp             CCCCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHS-CCEETTEECSSTTCBCCEEET
T ss_pred             CCCCEEEEEEEE----------------CCEeCeEEEEEEcCCCCcHHHHHHHHhhcc-cccccCCCCCcCCcccceecc
Confidence            468999999999                899999999999999999999999999998 66        99999999999


Q ss_pred             CeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCC
Q 021845          135 GQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP  214 (306)
Q Consensus       135 ~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~  214 (306)
                      ++++|+|+.  ..+.+......        ....+.++.+...|+++|+|+|++.          ++++++|||||++++
T Consensus        67 ~~~~q~G~~--~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~G~l~ma~~----------~~~s~~sqFfI~~~~  126 (173)
T d1qoia_          67 DFMIQGGDF--VNGDGTGVASI--------YRGPFADENFKLRHSAPGLLSMANS----------GPSTNGCQFFITCSK  126 (173)
T ss_dssp             TTEEEECCT--TTSSSCCCCCT--------TSSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEESSC
T ss_pred             ceeeccCCc--ccCCcceeecc--------cCCcccccccccccCCCcEEEeeec----------CCCCCCceeeeeccC
Confidence            999999987  23332222222        1355677777788888999999998          799999999999998


Q ss_pred             CCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       215 ~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                        .++||++|+|||||++|||||++|++++|++                          +++|+++|+|++||+|
T Consensus       127 --~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~--------------------------~~~P~~~i~I~~cGel  173 (173)
T d1qoia_         127 --CDWLDGKHVVFGKIIDGLLVMRKIENVPTGP--------------------------NNKPKLPVVISQCGEM  173 (173)
T ss_dssp             --CGGGTTTSCEEEEEEECHHHHHHHHTSCBCG--------------------------GGCBSSCEEEEEEEEC
T ss_pred             --CccCCcceeEEEEEechHHHHHHHHhCCcCC--------------------------CCcCCCCEEEEcccCC
Confidence              9999999999999999999999999999974                          5899999999999997

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-44  Score=317.45  Aligned_cols=172  Identities=27%  Similarity=0.530  Sum_probs=150.3

Q ss_pred             CCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccC----------ccccCceeEee
Q 021845           63 TITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSR----------SLYRNTLVHKI  132 (306)
Q Consensus        63 ~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~----------~~Y~gt~FhRV  132 (306)
                      +.+++|||||+|                +++.+|+|+||||.+.||+||+||++||+++          ++|+|+.||||
T Consensus        12 ~~np~v~~Di~i----------------~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv   75 (195)
T d1ihga2          12 PSNPRVFFDVDI----------------GGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI   75 (195)
T ss_dssp             TTSCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEE
T ss_pred             CCCCEEEEEEEE----------------CCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEE
Confidence            458999999999                7999999999999999999999999999851          46999999999


Q ss_pred             cCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEc
Q 021845          133 FPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT  212 (306)
Q Consensus       133 i~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl  212 (306)
                      ++++++|+|+.  ....+.++...+        +..+.++...+.|+++|+|+|++.          ++++++|||||+|
T Consensus        76 ~~~~~i~~G~~--~~~~~~~~~~~~--------~~~~~~~~~~~~h~~~G~lsm~~~----------~~~s~~SqFfItl  135 (195)
T d1ihga2          76 IKKFMIQGGDF--SNQNGTGGESIY--------GEKFEDENFHYKHDKEGLLSMANA----------GSNTNGSQFFITT  135 (195)
T ss_dssp             ETTTEEEECCT--TTSSSSCCCBTT--------BSCBCCCCCCBCCCSTTEEEECCS----------STTCBCSCEEEES
T ss_pred             EcCceeecCCc--cCCCCCCCccCC--------CCcccccccCcccCcceEEeeeec----------CCCCCCceeEeec
Confidence            99999999997  233444444332        456778888899999999999998          7999999999999


Q ss_pred             CCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       213 ~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                      ++  .++||++|+|||||++|||||++|++++++                           .++|+++|+|++||+|+..
T Consensus       136 ~~--~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~---------------------------~~~P~~~i~I~~cG~l~~~  186 (195)
T d1ihga2         136 VP--TPHLDGKHVVFGQVIKGMGVAKILENVEVK---------------------------GEKPAKLCVIAECGELKEG  186 (195)
T ss_dssp             SC--CGGGTTTSCEEEEEEECHHHHHHHHTSCEE---------------------------TTEESSCEEEEEEEEECTT
T ss_pred             cC--CcccCCcceEEEEEecCHHHHHHHHcCCCC---------------------------CCCcCCCeEEEECcccCCC
Confidence            98  999999999999999999999999999875                           4899999999999999996


Q ss_pred             CCCCCCC
Q 021845          293 PNATTKP  299 (306)
Q Consensus       293 ~~~~~~~  299 (306)
                      .+...+|
T Consensus       187 ~~~~~~~  193 (195)
T d1ihga2         187 DDWGIFP  193 (195)
T ss_dssp             CCCCCSC
T ss_pred             CcCCCCC
Confidence            6555444

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=9.7e-45  Score=312.02  Aligned_cols=160  Identities=31%  Similarity=0.616  Sum_probs=142.8

Q ss_pred             CceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc--------CccccCceeEeecCCe
Q 021845           65 TDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS--------RSLYRNTLVHKIFPGQ  136 (306)
Q Consensus        65 ~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~--------~~~Y~gt~FhRVi~~f  136 (306)
                      .++|||||+|                ++|++|+|+||||.+.||+||+||++||++        .++|+|+.||||++++
T Consensus         3 r~~vy~Di~i----------------~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~y~g~~~~rv~~~~   66 (170)
T d1qnga_           3 RSKVFFDISI----------------DNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQF   66 (170)
T ss_dssp             SCEEEEEEEE----------------SSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTT
T ss_pred             CCEEEEEEEE----------------CCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCccCcccceEEEeCc
Confidence            5799999999                789999999999999999999999999974        2689999999999999


Q ss_pred             EEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCC
Q 021845          137 FFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGP  216 (306)
Q Consensus       137 ~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~  216 (306)
                      ++|+|+.  ..+++.++...+        +..+.++.+.+.|+.+|+|+|++.          ++++++|||||++++  
T Consensus        67 ~iq~g~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~G~lsma~~----------~~~s~~sqFfIt~~~--  124 (170)
T d1qnga_          67 MCQGGDI--TNGNGSGGESIY--------GRSFTDENFNMKHDQPGLLSMANA----------GPNTNSSQFFITLVP--  124 (170)
T ss_dssp             EEEECCT--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECCS----------STTCBCSCEEEESSC--
T ss_pred             eEEecCc--cCCCCCCCcccC--------CCccccccccccCCCCeEEEEeec----------CCCCccccceeccCC--
Confidence            9999997  344444444333        456778888899999999999997          799999999999998  


Q ss_pred             CCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          217 CPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       217 ~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      .++||++|+|||||++|||||++|++.+++                           .++|.++|+|++||+|
T Consensus       125 ~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~---------------------------~g~P~~~i~I~~CG~l  170 (170)
T d1qnga_         125 CPWLDGKHVVFGKVIEGMNVVREMEKEGAK---------------------------SGYVKRSVVITDCGEL  170 (170)
T ss_dssp             CGGGTTTSCEEEEEEECHHHHHHHHTTCCT---------------------------TCCCSSCEEEEEEEEC
T ss_pred             cccccccccEEeEEeccHHHHHHHHhcCCC---------------------------CcCCccCEEEEeeEcC
Confidence            999999999999999999999999998876                           3899999999999997

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=4.1e-44  Score=306.05  Aligned_cols=157  Identities=28%  Similarity=0.541  Sum_probs=140.1

Q ss_pred             ceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCc---cccCceeEeecCCeEEEcCC
Q 021845           66 DSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRS---LYRNTLVHKIFPGQFFLAGR  142 (306)
Q Consensus        66 ~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~---~Y~gt~FhRVi~~f~iq~Gd  142 (306)
                      .+|||||++                +++++|+|+||||.+.||+||+||++||++ +   +|+|+.||||++++++|+|+
T Consensus         2 ~~V~fDi~i----------------~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~-~~~~~Y~g~~f~rv~~~~~iq~G~   64 (162)
T d2cfea1           2 SNVFFDITK----------------NGAPLGTIKFKLFDDVVPKTAANFRALCTG-EKGFGYAGSHFHRVIPDFMLQGGD   64 (162)
T ss_dssp             CCEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHT-TTSCCSTTCBCCEEETTTEEEECC
T ss_pred             CeEEEEEEE----------------CCEEeeEEEEEEcCCCChHHHHHHHHHHhh-ccCCccCCCEEEEEEecceEecCC
Confidence            369999999                899999999999999999999999999998 5   49999999999999999999


Q ss_pred             CCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCC
Q 021845          143 QGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDN  222 (306)
Q Consensus       143 ~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg  222 (306)
                      +  ..+++.++...+        ...+.+|++.++|+++|+|+|++.          ++|+++|||||++++  .++||+
T Consensus        65 ~--~~~~~~~~~~~~--------~~~~~~e~~~~~h~~~G~vsm~~~----------~~~s~~sqF~I~~~~--~~~ld~  122 (162)
T d2cfea1          65 F--TAGNGTGGKSIY--------GAKFADENFQLKHNKPGLLSMANA----------GPNTNGSQFFITTVV--TSWLDG  122 (162)
T ss_dssp             T--TTSSSSCCCBTT--------BSCBCCCCCCSCCCSTTEEEECCS----------STTCBSSCEEEESSC--CGGGTT
T ss_pred             C--CCCCCCCCcccC--------CCccccccCCCCCCCceEEEEeec----------CCCCCCcceEEeecC--Cccccc
Confidence            7  344444444433        356788888899999999999997          799999999999998  999999


Q ss_pred             CCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeE
Q 021845          223 KNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGE  288 (306)
Q Consensus       223 ~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~  288 (306)
                      +|+|||||++|||||++|+..++.                           +++|.++|+|++|||
T Consensus       123 ~~~vFG~Vi~G~dvl~~I~~~~~~---------------------------~~~P~~~i~I~~cgv  161 (162)
T d2cfea1         123 KHVVFGEVIDGMNVVKAIEAEGSG---------------------------SGKPRSRIEIAKCGV  161 (162)
T ss_dssp             TSCEEEEEEECHHHHHHHHTTCCT---------------------------TSCCSSCEEEEEEEE
T ss_pred             cceEEEEEEehHHHHHHHhcCCCC---------------------------CCCCCCCeEEEeeEc
Confidence            999999999999999999987654                           489999999999998

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=1.9e-43  Score=304.72  Aligned_cols=162  Identities=32%  Similarity=0.578  Sum_probs=142.5

Q ss_pred             CceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc----------CccccCceeEeecC
Q 021845           65 TDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS----------RSLYRNTLVHKIFP  134 (306)
Q Consensus        65 ~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~----------~~~Y~gt~FhRVi~  134 (306)
                      ..+|||||+|                +++.+|+|+||||.+.||+||+||++||++          .++|+++.||||++
T Consensus         3 ~~~v~~di~i----------------~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~   66 (174)
T d1a33a_           3 RRRVFLDVTI----------------DGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIK   66 (174)
T ss_dssp             CEEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEET
T ss_pred             CCEEEEEEEE----------------CCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEe
Confidence            5789999999                788999999999999999999999999974          15899999999999


Q ss_pred             CeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCC
Q 021845          135 GQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP  214 (306)
Q Consensus       135 ~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~  214 (306)
                      ++++|+|+.  ..+++.++.+.+        +....++...++|+++|+|+|++.          ++++++|||||++++
T Consensus        67 ~~~iq~g~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~l~~~~~----------~~~s~~sqFfI~~~~  126 (174)
T d1a33a_          67 NFMIQGGDF--TKGDGTGGESIY--------GGMFDDEEFVMKHDEPFVVSMANK----------GPNTNGSQFFITTTP  126 (174)
T ss_dssp             TTEEEECCT--TTSSSSCCCCTT--------SSCBCCCCSCSCCCSTTEEEECCS----------STTCBCSCEEEESSC
T ss_pred             CCEEeeCCC--CCCCCCCCCCcc--------CccccccccccccCcceeeeeecc----------CCCCCCcccccccCC
Confidence            999999997  344444444433        234556667789999999999997          799999999999998


Q ss_pred             CCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       215 ~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                        .|+||++|+|||||++|||||++|++++|+.                          +++|.++|+|.+||+|.
T Consensus       127 --~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~--------------------------~~~P~~~i~I~~cGel~  174 (174)
T d1a33a_         127 --APHLNNIHVVFGKVVSGQEVVTKIEYLKTNS--------------------------KNRPLADVVILNCGELV  174 (174)
T ss_dssp             --CGGGTTTSCEEEEEEECHHHHHHHHTSCBCT--------------------------TSCBSSCEEEEEEEECC
T ss_pred             --cccccccceeEEEEechHHHHHHHHhCCcCC--------------------------CCCCCCCEEEEeeEEEC
Confidence              9999999999999999999999999999975                          58999999999999983

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=2e-43  Score=308.12  Aligned_cols=162  Identities=27%  Similarity=0.524  Sum_probs=143.4

Q ss_pred             CCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCcc--------ccCceeEeecCC
Q 021845           64 ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSL--------YRNTLVHKIFPG  135 (306)
Q Consensus        64 ~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~--------Y~gt~FhRVi~~  135 (306)
                      -+++|||||++                +++.+|+|+||||.+.||+||+||++||++ ++        |+|+.|||++++
T Consensus        15 ~np~V~~di~i----------------~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~-~~~~~~~~~~Y~g~~f~rv~~~   77 (186)
T d1z81a1          15 SNPVVFMDINL----------------GNNFLGKFKFELFQNIVPKTSENFRQFCTG-EYKVNNLPVGYKNTIFHRVIKE   77 (186)
T ss_dssp             TCCEEEEEEEE----------------TTEEEEEEEEEECTTTCHHHHHHHHHHHHT-CCBSSSSBCSSTTEECCEEETT
T ss_pred             CCCEEEEEEEE----------------CCEeceEEEEEEcCCCChHHHHHHHHHHhc-ccccCCcccccCCCeeeeeecc
Confidence            37899999999                789999999999999999999999999998 66        999999999999


Q ss_pred             eEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCC
Q 021845          136 QFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG  215 (306)
Q Consensus       136 f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~  215 (306)
                      +++|+|+.  ...++..+....        +..+.++...++|+++|+++|++.          ++++++|||||++++ 
T Consensus        78 ~~i~~G~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~G~~~~~~~----------g~~~~~sqFfIt~~~-  136 (186)
T d1z81a1          78 FMIQGGDF--INHNGSGSLSIY--------GEKFDDENFDIKHDKEGLLSMANS----------GPNTNGCQFFITTKK-  136 (186)
T ss_dssp             TEEEECCT--TTSSSCCCCBTT--------BSCCCCCCCCSCCCSTTEEEECCS----------SSSCCCSCEEEESSC-
T ss_pred             eeeecCCc--cccCCccccccc--------CCcccccccccccCCCccchhhhc----------CCCccccceeeeccc-
Confidence            99999986  233333333222        466788888899999999999997          799999999999998 


Q ss_pred             CCCCCCCCCcEEEEEEcC--HHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          216 PCPQLDNKNIVFGTVLQG--LDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       216 ~~p~LDg~~tVFGrVv~G--mdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                       .++||++|+|||||++|  ||||++|+++++++                         ..++|+++|+|++||+|
T Consensus       137 -~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~-------------------------~~~~P~~~i~I~~CGel  186 (186)
T d1z81a1         137 -CEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTP-------------------------YIYKPKIPINVVECGEL  186 (186)
T ss_dssp             -CGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCT-------------------------TTCCBSSCEEEEEEEEC
T ss_pred             -ccccCCCccEEEEEEeCccHHHHHHHhccCCCC-------------------------CCCccCCCEEEEeCCcC
Confidence             99999999999999998  99999999998864                         14899999999999996

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-42  Score=293.68  Aligned_cols=153  Identities=28%  Similarity=0.449  Sum_probs=132.1

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      .+|++|+|+||||.+.||+||+||++||++ ++|+|+.||||+++|+||+||.   ...+.++...+        +..+.
T Consensus         5 ~~T~~G~i~ieL~~~~aP~tv~nF~~L~~~-g~Y~~~~f~rv~~~~~iq~Gd~---~~~~~~~~~~~--------~~~~~   72 (159)
T d2ok3a1           5 LHTDVGDIKIEVFCERTPKTCENFLALCAS-NYYNGCIFHRNIKGFMVQTGDP---TGTGRGGNSIW--------GKKFE   72 (159)
T ss_dssp             EEETTEEEEEEECTTTCHHHHHHHHHHHHT-TTTTTCBCCEEETTTEEEECCT---TSSSSCCCCTT--------SSCBC
T ss_pred             EEeCCeEEEEEEcCCCChHHHHHHHHHHhh-hcccceeEecccCCeEEEeCCc---cccCCCCcccC--------CCccc
Confidence            378899999999999999999999999999 9999999999999999999997   22233333333        23344


Q ss_pred             CC-cccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845          171 PN-AFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS  249 (306)
Q Consensus       171 de-~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~  249 (306)
                      +| ...++|+++|+|+|++.          ++++++|||||++++  .++||++|+|||||++|||||++|+++++++. 
T Consensus        73 ~e~~~~~~~~~~G~lsma~~----------~~~s~~sqFfIt~~~--~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~-  139 (159)
T d2ok3a1          73 DEYSEYLKHNVRGVVSMANN----------GPNTNGSQFFITYGK--QPHLDMKYTVFGKVIDGLETLDELEKLPVNEK-  139 (159)
T ss_dssp             CCCCTTCCSCSTTEEEECCS----------STTCBCSCEEEESSC--CGGGTTTSCEEEEEEECHHHHHHHHTCCBCTT-
T ss_pred             cccccCCCCCCCeEEEEeeC----------CCCCcCcceEeeecc--CcccccceEEEEecccchHHHHHHHcCcCCCC-
Confidence            44 33588999999999997          789999999999998  99999999999999999999999999998741 


Q ss_pred             hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                                              .++|.++|+|.+|++|.++
T Consensus       140 ------------------------~~~P~~~i~I~~v~i~~~P  158 (159)
T d2ok3a1         140 ------------------------TYRPLNDVHIKDITIHANP  158 (159)
T ss_dssp             ------------------------TCCBSSCCBEEEEEEECCS
T ss_pred             ------------------------CCCcCCCcEEEEEEEEeCC
Confidence                                    4789999999999999873

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=1.6e-42  Score=298.67  Aligned_cols=165  Identities=27%  Similarity=0.500  Sum_probs=121.8

Q ss_pred             ceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCcc---ccCceeEeecCCeEEEcCC
Q 021845           66 DSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSL---YRNTLVHKIFPGQFFLAGR  142 (306)
Q Consensus        66 ~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~---Y~gt~FhRVi~~f~iq~Gd  142 (306)
                      ++|||||++.           ..+.++|++|+|+||||.+.||+||+||++||+. ++   |+++.||||++++++|+|+
T Consensus         2 ~~v~~di~~~-----------~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~-~~~~~y~~~~f~ri~~~~~iq~G~   69 (171)
T d2c3ba1           2 SQVFFDVEYA-----------PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKR-PAGEGYRESTFHRIIPNFMIQGGD   69 (171)
T ss_dssp             CCEEEEEEEC-----------CTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHS-CTTTSSTTCBCCEEETTTEEEECC
T ss_pred             CeEEEeeecc-----------ccccccceeeEEEEEEcCCCChHHHHHHHHHhhh-cccccccCceeeEEEEEEeeEcCC
Confidence            5799999872           2345899999999999999999999999999997 55   9999999999999999999


Q ss_pred             CCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCC
Q 021845          143 QGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDN  222 (306)
Q Consensus       143 ~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg  222 (306)
                      .  ..+++.++....        +..+.++...+.|+++|+|+||+.          ++++++|||||++++  .++||+
T Consensus        70 ~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~G~lsma~~----------~~~s~~sqFfI~~~~--~~~ldg  127 (171)
T d2c3ba1          70 F--TRGNGTGGRSIY--------GDKFADENFSRKHDKKGILSMANA----------GPNTNGSQFFITTAV--TSWLDG  127 (171)
T ss_dssp             --------------------------------CHHHHHTCEEEEC-------------------CEEEECSC--CTTCCS
T ss_pred             c--cCCCCCCCCcCC--------CCccccccccccCCCCceEEeeec----------CCCCCCcceeeccCC--ccccCC
Confidence            7  344444444332        345666777888999999999997          799999999999998  899999


Q ss_pred             CCcEEEEEEc--CHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          223 KNIVFGTVLQ--GLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       223 ~~tVFGrVv~--GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      +|+|||||++  |||||++|+++++..                         ...+|..+|+|.+||+|
T Consensus       128 ~~tvFG~Vie~~G~dvl~~I~~~~t~~-------------------------g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         128 KHVVFGEVADEKSYSVVKEIEALGSSS-------------------------GSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             CCEEEEEECSHHHHHHHHHHHTTCCTT-------------------------SCCCSSSCCEEEEEEEC
T ss_pred             CceEEEEEEeccCHHHHHHHHcCCCCC-------------------------CCcCCCCCEEEEeCccC
Confidence            9999999994  999999999998874                         13579999999999997

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-41  Score=293.40  Aligned_cols=155  Identities=25%  Similarity=0.380  Sum_probs=136.1

Q ss_pred             CCCCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCC
Q 021845           89 CSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDT  168 (306)
Q Consensus        89 ~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~  168 (306)
                      +...|++|+|+||||.+.||+||+||++||++ ++|+|+.||||++++++|+|+.   ..++.++...+        +..
T Consensus         3 v~l~T~~G~i~IeL~~~~aP~tv~nF~~L~~~-~~Y~g~~f~rv~~~~~iq~Gd~---~~~~~~~~~~~--------~~~   70 (178)
T d1zkca1           3 VRLHTNKGDLNLELHCDLTPKTCENFIRLCKK-HYYDGTIFHRSIRNFVIQGGDP---TGTGTGGESYW--------GKP   70 (178)
T ss_dssp             EEEEETTEEEEEEECTTTSHHHHHHHHHHHHT-TTTTTEEEEEEETTTEEEECCT---TSSSSCCCBTT--------BSC
T ss_pred             EEEEeCCEEEEEEEcCCCChHHHHHHHHHHhc-CCcCceEeeeccceeEEecCCc---cCCCCCCcccC--------CCC
Confidence            34578999999999999999999999999999 9999999999999999999997   33444544433        355


Q ss_pred             CCCCc-ccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCC
Q 021845          169 LRPNA-FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYK  247 (306)
Q Consensus       169 ~~de~-~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~  247 (306)
                      +.+|. ..++|+++|+|+|++.          ++++++|||||++++  .++||++|+|||||++|||||++|+++++++
T Consensus        71 ~~~E~~~~l~~~~~G~lsma~~----------~~~s~~sqF~It~~~--~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~  138 (178)
T d1zkca1          71 FKDEFRPNLSHTGRGILSMANS----------GPNSNRSQFFITFRS--CAYLDKKHTIFGRVVGGFDVLTAMENVESDP  138 (178)
T ss_dssp             BCCCCCTTCCSCSTTEEEECCS----------STTCBCSCEEEESSC--CGGGTTTSCEEEEEEECHHHHHHHHHSCBCT
T ss_pred             cCCccccccCCCCCeEEEEeec----------CCCCccceeeccccC--CcccCCcceEEEEeeCcHHHHHHHHcCCCCC
Confidence            66664 3689999999999997          789999999999998  8999999999999999999999999998864


Q ss_pred             CchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845          248 PSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK  292 (306)
Q Consensus       248 ~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~  292 (306)
                                               .+++|+++|+|.+|.+|.++
T Consensus       139 -------------------------~~~~P~~~v~I~~~~Il~~p  158 (178)
T d1zkca1         139 -------------------------KTDRPKEEIRIDATTVFVDP  158 (178)
T ss_dssp             -------------------------TTCCBSSCCEEEEEEEEECT
T ss_pred             -------------------------CCCccCCCeEEEEEEEEcCC
Confidence                                     15899999999999999884

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=2.6e-41  Score=286.27  Aligned_cols=149  Identities=30%  Similarity=0.427  Sum_probs=131.8

Q ss_pred             CCCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCC
Q 021845           90 SSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTL  169 (306)
Q Consensus        90 ~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~  169 (306)
                      +..|++|+|+||||.+.||+||+||++||++ ++|+|+.||||++++++|+||.   .+.+.++.+.+        +..+
T Consensus         5 ~i~T~~G~i~ieL~~~~aP~tv~nF~~l~~~-g~Y~g~~f~rv~~~~~iq~Gd~---~~~~~~~~~~~--------~~~~   72 (155)
T d2fu0a1           5 IIYTTMGDIHISLFYKECKKTVQNFSVHSIN-GYYNNCIFHRVIKHFMVQTGDP---SGDGTGGESIW--------GNEF   72 (155)
T ss_dssp             EEEETTEEEEEEECTTTCHHHHHHHHHHHHT-TTTTTCBCCEEETTTEEEECCT---TSSSSCCCCTT--------SSCB
T ss_pred             EEEEcccEEEEEEcCCCChHHHHHHhhHhhC-CccccceeeeeeecceeeccCC---CCCCcCCcccC--------CCcc
Confidence            4578999999999999999999999999999 9999999999999999999997   44444555544        3456


Q ss_pred             CCCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCC
Q 021845          170 RPNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKP  248 (306)
Q Consensus       170 ~de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~  248 (306)
                      +++.. .+.|.++|+++|++.          ++|+++|||||++++  .++||++|+|||||++|||||++|+++++++ 
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~----------~~~s~~sqFfI~~~~--~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~-  139 (155)
T d2fu0a1          73 EDEFFDHLNHSKPFMVSMANC----------GPNTNGSQFFITTVP--CPWLDFKHTVFGKVTQGSKIVLDIEKVRTDK-  139 (155)
T ss_dssp             CCCCBTTBCSSSSSEEEECCS----------STTCBCSCEEEESSC--CGGGTTTSCEEEEEEECHHHHHHHHTSCBCT-
T ss_pred             ccccccccccCCccEEEeccc----------CCCCCCccceecccC--ccccccceEEEEEEeccHHHHHHHHhCCCCC-
Confidence            66554 578999899999987          799999999999998  9999999999999999999999999999875 


Q ss_pred             chhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeE
Q 021845          249 SERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGE  288 (306)
Q Consensus       249 ~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~  288 (306)
                                               .++|+++|+|.+|.+
T Consensus       140 -------------------------~~~P~~~i~I~~v~i  154 (155)
T d2fu0a1         140 -------------------------RDKPLEDIKILNIKI  154 (155)
T ss_dssp             -------------------------TSCBSSCCBEEEEEE
T ss_pred             -------------------------CCCcCCCcEEEEEEE
Confidence                                     689999999999964

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-41  Score=286.24  Aligned_cols=144  Identities=24%  Similarity=0.416  Sum_probs=126.5

Q ss_pred             cceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCC-
Q 021845           94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPN-  172 (306)
Q Consensus        94 ~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de-  172 (306)
                      ++|+|+||||.+.||+||+||++||+. ++|+|+.||||+++|++|+||+   .+.+.++...+        +..+.+| 
T Consensus        19 ~~G~i~ieL~~~~aP~tv~nF~~L~~~-g~Y~g~~f~rv~~~~~iq~Gd~---~~~~~~~~~~~--------~~~~~~e~   86 (166)
T d1xwna1          19 SMGIIVLELYWKHAPKTCKNFAELARR-GYYNGTKFHRIIKDFMIQGGDP---TGTGRGGASIY--------GKQFEDEL   86 (166)
T ss_dssp             SSCEEEEEECTTTCHHHHHHHHHHHHH-TSSTTCCEEEEETTTEEEECCS---TTTTSSCCCSS--------CSCCCCCC
T ss_pred             CceeEEEEEcCCCChHHHHHHHHHHhc-CCcCceeeeEEcccEEEEeCCC---CCCCCCCccCC--------CCcccccc
Confidence            349999999999999999999999999 9999999999999999999997   44454555443        3445555 


Q ss_pred             cccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhh
Q 021845          173 AFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERI  252 (306)
Q Consensus       173 ~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~  252 (306)
                      +..+.|+++|+|+|++.          ++|+++|||||++++  .++||++|+|||||++|||||++|+++++++     
T Consensus        87 ~~~~~~~~~G~lsm~~~----------~~~s~~sqFfI~~~~--~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~-----  149 (166)
T d1xwna1          87 HPDLKFTGAGILAMANA----------GPDTNGSQFFVTLAP--TQWLDGKHTIFGRVCQGIGMVNRVGMVETNS-----  149 (166)
T ss_dssp             CTTCCSCSSSEEEEEEE----------ETTEEEEEEEEECSC--CSTTTTTSEEEEECSSCHHHHHHHHHSCBCS-----
T ss_pred             CCCCCCCCCeEEEeccc----------CCCCCCcceEEeecC--hhhccccceEEEEEechHHHHHHHHhCCCCC-----
Confidence            34688999999999997          799999999999998  8999999999999999999999999999975     


Q ss_pred             hhhhhhHhhhcccccccccccCCCCCCcEEEeeee
Q 021845          253 QKYNELAAFIGDKRADTARAIWNRPLKTVYISDCG  287 (306)
Q Consensus       253 ~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg  287 (306)
                                           +++|.++|+|.+.-
T Consensus       150 ---------------------~~~P~~~I~I~~a~  163 (166)
T d1xwna1         150 ---------------------QDRPVDDVKIIKAY  163 (166)
T ss_dssp             ---------------------SSCBSSCCCEEEEE
T ss_pred             ---------------------CCCCCCCeEEEEee
Confidence                                 58999999998864

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=2.1e-40  Score=284.74  Aligned_cols=147  Identities=27%  Similarity=0.452  Sum_probs=128.1

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      ..|++|+|+||||.+.||+||+||++||+. ++|+|+.|||+++++++|+|+.   .+.+.++....        ...+.
T Consensus        21 l~T~~G~i~IeL~~d~aP~tv~nF~~L~~~-g~Y~~~~f~rv~~~~~iq~g~~---~~~~~~~~~~~--------~~~~~   88 (169)
T d2b71a1          21 IYTNLGDFEVELYWYHSPKTCLNFYTLCEM-GFYDNTIFHRVIPNFVIQGGDP---TGTGKGGKSIY--------GEYFE   88 (169)
T ss_dssp             EEETTEEEEEEECTTTSHHHHHHHHHHHHT-TTTTTEEEEEEETTTEEEEEET---TSSSSCCCBTT--------BSCBC
T ss_pred             EEeCceeEEEEEeCCCCcHHHHHHHHHhhC-CccceeeeccccceeeEecccc---ccccCCCcccc--------ccccc
Confidence            367899999999999999999999999999 9999999999999999999987   33333333332        23344


Q ss_pred             CCc-ccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845          171 PNA-FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS  249 (306)
Q Consensus       171 de~-~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~  249 (306)
                      +|. ..++|.++|+|+|++.          +|++++|||||++++  .++||++|+|||||++|||||++|+++++++  
T Consensus        89 ~e~~~~l~h~~~g~ls~~~~----------~p~s~~sqFfIt~~~--~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~--  154 (169)
T d2b71a1          89 DEINKELKHTGAGILSMSNN----------GPNTNSSQFFITLAP--LPHLDGKHTIFARVSKNMTCIENIASVQTTA--  154 (169)
T ss_dssp             CCCCTTCCCCSTTEEEECCS----------STTCBSSCEEEESSC--CGGGTTTSCEEEEEEECHHHHHHHHTSCBCT--
T ss_pred             cccccccCCCCcEEEEhhhC----------CCCCCCCEEEEecCC--cchhhhhcceeeEEeccHHHHHHHHhCCCCC--
Confidence            543 3589999999999997          799999999999998  8999999999999999999999999999875  


Q ss_pred             hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeee
Q 021845          250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCG  287 (306)
Q Consensus       250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg  287 (306)
                                              +++|.++|+|.+|+
T Consensus       155 ------------------------~~~P~~~i~I~~~~  168 (169)
T d2b71a1         155 ------------------------TNKPIFDLKILRTS  168 (169)
T ss_dssp             ------------------------TCCBSSCCEEEEEE
T ss_pred             ------------------------CCCCCCCeEEEEcc
Confidence                                    58999999999986

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.1e-40  Score=280.85  Aligned_cols=152  Identities=26%  Similarity=0.413  Sum_probs=125.2

Q ss_pred             CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845           92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP  171 (306)
Q Consensus        92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d  171 (306)
                      +|+.|+|+||||.+.||+||+||++||+. ++|+|+.||||+++|++|+|+..  ...+.++   +        +..+.+
T Consensus        10 ~T~~G~i~ieL~~~~aP~tv~nF~~L~~~-~~Y~g~~fhRv~~~~~iq~G~~~--~~~~~~~---~--------~~~~~~   75 (166)
T d1v9ta_          10 TTSAGNIELELDKQKAPVSVQNFVDYVNS-GFYNNTTFHRVIPGFMIQGGGFT--EQMQQKK---P--------NPPIKN   75 (166)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHT-TTTTTCBEEEEETTTEEEESSBC--TTCCBCC---C--------CCCBCC
T ss_pred             EECCeeEEEEEeCCCChHHHHHHHHHhhC-CccccceeeEEEEEeecccCCcC--CcccccC---C--------CCCccc
Confidence            34569999999999999999999999999 99999999999999999999872  2222111   1        345667


Q ss_pred             CcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCC-----CCcEEEEEEcCHHHHHHHHcCCCC
Q 021845          172 NAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDN-----KNIVFGTVLQGLDVVAAIASIPTY  246 (306)
Q Consensus       172 e~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg-----~~tVFGrVv~GmdVl~kI~~~~t~  246 (306)
                      |.....|+.+|.|+|++.+         ++++++|||||++++  .++||+     +|+|||+|++|||||++|++++++
T Consensus        76 e~~~~~~~~rg~v~~~~~~---------~~~s~~sqFfI~~~~--~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~  144 (166)
T d1v9ta_          76 EADNGLRNTRGTIAMARTA---------DKDSATSQFFINVAD--NAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH  144 (166)
T ss_dssp             CGGGSCCCCTTEEEECCCS---------STTCBCSCEEEESSC--CGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEE
T ss_pred             cccccccccCCEEEEEeee---------cCCCcccccccccCC--ccccccccccCCEEEeeEEeccHHHHHHHHhCccc
Confidence            7664445557999999864         789999999999998  888886     489999999999999999999886


Q ss_pred             CCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845          247 KPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK  290 (306)
Q Consensus       247 ~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~  290 (306)
                      ..              |        ...++|+++|+|.+|++|.
T Consensus       145 ~~--------------~--------~~~~~P~~~v~I~~~~vlp  166 (166)
T d1v9ta_         145 DV--------------G--------PYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             EE--------------T--------TEEEEESSCCBEEEEEECC
T ss_pred             CC--------------C--------CCCCccCCCeEEEEEEEcC
Confidence            31              1        1136999999999999974

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6.4e-39  Score=275.44  Aligned_cols=147  Identities=24%  Similarity=0.410  Sum_probs=125.7

Q ss_pred             CCCccceeEEEEecCCCCchHHHHHHHHhccC--------------ccccCceeEeecCCeEEEcCCCCCcCCCCCCCcc
Q 021845           90 SSPVPLGRLIIGLYGHLAPITVSNFKAMCSSR--------------SLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGEL  155 (306)
Q Consensus        90 ~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~--------------~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s  155 (306)
                      +.+|+.|+|+||||.+.||+||+||++||+++              .+|+|+.|||+++++++|+|++   .+.+.++..
T Consensus         7 ti~T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~---~~~~~~~~~   83 (171)
T d1w74a_           7 TLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDP---TGTGRGGPG   83 (171)
T ss_dssp             EEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCT---TSSSSCCSS
T ss_pred             EEEECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccc---cCCCCCCcc
Confidence            35788999999999999999999999999962              2799999999999999999997   333222221


Q ss_pred             CCCCCCCCCCCCCCCCC-cccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEE--c
Q 021845          156 HPPLDFLPPNTDTLRPN-AFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVL--Q  232 (306)
Q Consensus       156 ~~~~~~~~~~g~~~~de-~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv--~  232 (306)
                                 ..+.+| ...++|+++|+|+|++.          ++|+++|||||++++  .++||++|+|||||+  +
T Consensus        84 -----------~~~~~e~~~~~~~~~~g~v~~~~~----------~~~s~~sqFfIt~~~--~p~ld~~~tVFG~Vv~ge  140 (171)
T d1w74a_          84 -----------YKFADEFHPELQFDKPYLLAMANA----------GPGTNGSQFFITVGK--TPHLNRRHTIFGEVIDAE  140 (171)
T ss_dssp             -----------CCBCCCCCTTCCSCSSSEEEECCS----------STTCBSSCEEEESSC--CGGGTTTSCEEEEECSHH
T ss_pred             -----------cccccccCCCcCCCCCEEEEEEec----------CCCCCCcceEeeccC--CCccccccEEEEEEeccc
Confidence                       123333 34688999999999997          799999999999998  999999999999999  4


Q ss_pred             CHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeE
Q 021845          233 GLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGE  288 (306)
Q Consensus       233 GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~  288 (306)
                      |||||++|+++++++                          +++|+++|+|.+|.+
T Consensus       141 Gmdvl~~I~~~~~~~--------------------------~~~P~~~i~I~~v~i  170 (171)
T d1w74a_         141 SQRVVEAISKTATDG--------------------------NDRPTDPVVIESITI  170 (171)
T ss_dssp             HHHHHHHHHTSCBCT--------------------------TSCBSSCCEEEEEEE
T ss_pred             cHHHHHHHHcCCcCC--------------------------CCccCCCcEEEEEEE
Confidence            999999999999985                          689999999999975

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-38  Score=270.60  Aligned_cols=149  Identities=26%  Similarity=0.360  Sum_probs=126.4

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      .+|++|+|+||||.+.||+||+||++||++ ++|+|+.|||++++|++|+|+..   +...++....        ...+.
T Consensus        14 ~~T~~G~i~ieL~~~~aP~tv~nF~~l~~~-g~Y~g~~f~rv~~~~~iq~G~~~---~~~~~~~~~~--------~~~~~   81 (164)
T d2a2na1          14 IHTSMGDIHTKLFPVECPKTVENFCVHSRN-GYYNGHTFHRIIKGFMIQTGDPT---GTGMGGESIW--------GGEFE   81 (164)
T ss_dssp             EEETTEEEEEEECTTTCHHHHHHHHHHHHT-TTTTTCBCCEEETTTEEEECCTT---SSSSCCCCTT--------SSCBC
T ss_pred             EEeceeEEEEEEcCCCChHHHHHHHHHHhC-CCcccceeeEEeeeeeEeecccc---cccCCCceee--------ecccc
Confidence            466789999999999999999999999999 99999999999999999999972   2222222111        12233


Q ss_pred             C-CcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845          171 P-NAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS  249 (306)
Q Consensus       171 d-e~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~  249 (306)
                      + ....++|+++|+|+|++.          ++++++|||||++++  .++||++|+|||||++|||||++|++++++.  
T Consensus        82 ~~~~~~~~~~~~~~l~~~~~----------~~~s~~sqFfI~~~~--~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~--  147 (164)
T d2a2na1          82 DEFHSTLRHDRPYTLSMANA----------GSNTNGSQFFITVVP--TPWLDNKHTVFGRVTKGMEVVQRISNVKVNP--  147 (164)
T ss_dssp             CCCCTTCCSCSSSEEEECCS----------STTCBCSCEEEESSC--CGGGTTTSCEEEEEEECHHHHHHHHTSCBCT--
T ss_pred             cccccccccCccceeehhhc----------CCCCCcccceecccC--ccccccceeEEEEecChHHHHHHHHcCCcCC--
Confidence            3 345688999999999998          799999999999998  9999999999999999999999999999874  


Q ss_pred             hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeE
Q 021845          250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGE  288 (306)
Q Consensus       250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~  288 (306)
                                             ..++|+++|+|.+|.+
T Consensus       148 -----------------------~~~~P~~~V~I~~v~i  163 (164)
T d2a2na1         148 -----------------------KTDKPYEDVSIINITV  163 (164)
T ss_dssp             -----------------------TTCCBSSCCBEEEEEE
T ss_pred             -----------------------CCCCcCCCcEEEEEEE
Confidence                                   1489999999999976

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-38  Score=272.32  Aligned_cols=153  Identities=23%  Similarity=0.353  Sum_probs=124.8

Q ss_pred             CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845           91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR  170 (306)
Q Consensus        91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~  170 (306)
                      ..|+.|+|+||||.+.||+||+||++||+. ++|+|+.||||+++|++|+|+..  ...+.++   +        +..+.
T Consensus         4 l~T~~G~i~ieL~~~~aP~t~~nF~~l~~~-g~Y~g~~fhrv~~~~~iq~G~~~--~~~~~~~---~--------~~~~~   69 (164)
T d1lopa_           4 FHTNHGDIVIKTFDDKAPETVKNFLDYCRE-GFYNNTIFHRVINGFMIQGGGFE--PGMKQKA---T--------KEPIK   69 (164)
T ss_dssp             EEETTEEEEEEECTTTSHHHHHHHHHHHHT-TTTTTEECCEEETTTEEEESSEE--TTTEECC---C--------CCCBC
T ss_pred             EEeCCeEEEEEEcCCCCHHHHHHHHHHHHc-cCcCCceeeEEcCCceeeeeccc--cCCcCCc---c--------CCCcc
Confidence            478999999999999999999999999999 99999999999999999999862  2221111   1        34456


Q ss_pred             CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCC------CCCCCCCCCcEEEEEEcCHHHHHHHHcC
Q 021845          171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG------PCPQLDNKNIVFGTVLQGLDVVAAIASI  243 (306)
Q Consensus       171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~------~~p~LDg~~tVFGrVv~GmdVl~kI~~~  243 (306)
                      +|.. .++|. +|.|+|++.+         ++++++|||||++.+.      +.++||++|+|||||++|||||++|+++
T Consensus        70 ~e~~~~~~h~-~g~l~~~~~~---------~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~  139 (164)
T d1lopa_          70 NEANNGLKNT-RGTLAMARTQ---------APHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGV  139 (164)
T ss_dssp             CCCCSSCCCC-TTEEEECCCS---------STTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTS
T ss_pred             ccccccccce-eeEEEEeccC---------CCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhC
Confidence            6644 55565 6999999864         7899999999999862      2488999999999999999999999999


Q ss_pred             CCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845          244 PTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL  289 (306)
Q Consensus       244 ~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l  289 (306)
                      ++++.              |.        ..++|+++|+|.++.++
T Consensus       140 ~t~~~--------------~~--------~~~~P~~~v~I~~v~I~  163 (164)
T d1lopa_         140 ATGRS--------------GM--------HQDVPKEDVIIESVTVS  163 (164)
T ss_dssp             CEEEE--------------TT--------EEEEESSCCEEEEEEEC
T ss_pred             CcCCC--------------CC--------cCCCcCCCeEEEEEEEe
Confidence            88641              10        13699999999999775