Citrus Sinensis ID: 021850

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQSGSLHPLPLEPPSPSXXXXXXXIPMDLIRLTGRIVSRPLASRSSMELQNWGSHQGVLRFLMVLQLQKT
Secondary Structure (PSIPRED)
cccccccEEEEEccccccEEEcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccHHHHHHHHHHEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHcccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEccHHHHHHEcccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccEEEEEEEEEHHHEEEEEcccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccccccccccccccHHHHHHHHcccccHHHEccccccccccccHHHHHHcccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MALTFGKLTFLVGAGILTSVLakegrlssvsdavgGTLKIVSKLikqddpgpsdrKLFNDLLAEVSSVQQELshvprsviietssgsgtgakkYGVIVVIVAVGYGYVwwkgwklpdmmfATRRSLSDACNSVARQLEDVYSSISAAQRQLSSkitsvdrdvNKIVEISQATQEEVTILRGrskligdefQSVRDIVQTLESKLIEIegkqdittLGVKKLCDRArelengrptelvqsgslhplpleppspsxxxxxxxipmdlirltgrivsrplASRSSMELQNWGSHQGVLRFLMVLQLQKT
Flexible Loop (DISEMBL)
maltfgkltflVGAGILTSVLAKegrlssvsdavggTLKIVSklikqddpgpSDRKLFNDLLAEVSSVqqelshvprsviietssgsgtgakkyGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQrqlsskitsvdrdvNKIVeisqatqeevtilrgrskligdefqSVRDIVQTLESKlieiegkqdittlgVKKLCDRARELengrptelvqsgslhplpleppspsxXXXXXXIPMDLIRLTGRIVSRPlasrssmelqnWGSHQGVLRFLMVLQLQKT
Low Complexity Region (SEG)
MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTgakkygvivvivavgygyvWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQSGslhplpleppspsxxxxxxxipMDLIRLTGRIVSRPLASRSSMELQNWGSHQGVLRFLMVLQLQKT
Disordered region (IsUnstruct)
**LTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLI***************LL***************SVIIE******TGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSI*************VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD************************************XIPMDLIRLTGRIVSRP********LQNWGSHQGVLRFLMVLQ****
Disordered Region (DISOPRED)
***TFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGG***************************EVSSVQ**********************KKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI*E*********TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA***********************************IPMDLIRLTGRIV***********LQNWGSHQGVLRFLMVLQLQ**
Disordered Region (DISEMBL)
MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQSGSLHPLPLEPPSPSXXXXXXXIPMDLIRLTGRIVSRPLASRSSMELQNWGSHQGVLRFLMVLQLQKT
Disordered Region (DISPRO)
**LTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIK********RKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELE*********************SPSX*****XIPMDLIRLTGRIVSRPLASRSSMELQNWGSHQGVLRFLMVLQLQKT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQSGSLHPLPLEPPSPSXXXXXXXIPMDLIRLTGRIVSRPLASRSSMELQNWGSHQGVLRFLMVLQLQKT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
225425366	360	PREDICTED: uncharacterized protein LOC10	0.797	0.677	0.580	4e-61
297738479	361	unnamed protein product [Vitis vinifera]	0.797	0.675	0.580	4e-61
326417169	360	B-zip transcription factor [Vitis pseudo	0.797	0.677	0.580	5e-61
289466339	360	B-zip transcription factor [Vitis pseudo	0.797	0.677	0.580	1e-60
449445554	366	PREDICTED: uncharacterized protein LOC10	0.859	0.718	0.513	4e-59
224072554	363	predicted protein [Populus trichocarpa]	0.764	0.644	0.548	1e-57
255578294	368	DNA binding protein, putative [Ricinus c	0.781	0.649	0.526	7e-57
397746441	362	bZIP9 [Tamarix hispida]	0.820	0.693	0.482	1e-54
255580725	290	DNA binding protein, putative [Ricinus c	0.689	0.727	0.558	1e-54
116789686	376	unknown [Picea sitchensis]	0.810	0.659	0.468	2e-52

>gi|225425366|ref|XP_002270179.1| PREDICTED: uncharacterized protein LOC100248973 [Vitis vinifera]

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 144/248 (58%), Positives = 177/248 (71%), Gaps = 4/248 (1%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MAL  GKLT LVGAGI+ SVLAKEGR+S VS+   G  KI  K +KQDD      K  ND
Sbjct: 1   MALPLGKLTLLVGAGIVGSVLAKEGRMSDVSNFFSGAFKIALKQLKQDDSTSPTVKPKND 60

Query: 61  -LLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMM 119
            LLA+V+S++QEL  +  +  I   + SGTG  KYGV+V+IV VGYGY WWKGWKLPDMM
Sbjct: 61  ALLAQVNSLRQELQILASNRSITIVTASGTGKSKYGVVVIIVVVGYGYAWWKGWKLPDMM 120

Query: 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179
           FATRRSLSDAC+S+A+QLE+VYSSI+A +R LSS+I  VD  +++  E++ AT+EEV  L
Sbjct: 121 FATRRSLSDACSSIAKQLENVYSSIAATKRHLSSRIDRVDCSIDEFAELTSATKEEVFEL 180

Query: 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ- 238
           RG  K+IG +  SV+  VQ LESK+IEIEGKQDIT  G+ +LC  A  LEN R TE +Q 
Sbjct: 181 RGGMKMIGGDVASVQKAVQNLESKIIEIEGKQDITNEGLGRLCHYAWNLENSRTTERIQA 240

Query: 239 --SGSLHP 244
             S S  P
Sbjct: 241 SPSSSFRP 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738479|emb|CBI27680.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 144/248 (58%), Positives = 177/248 (71%), Gaps = 4/248 (1%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MAL  GKLT LVGAGI+ SVLAKEGR+S VS+   G  KI  K +KQDD      K  ND
Sbjct: 1   MALPLGKLTLLVGAGIVGSVLAKEGRMSDVSNFFSGAFKIALKQLKQDDSTSPTVKPKND 60

Query: 61  -LLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMM 119
            LLA+V+S++QEL  +  +  I   + SGTG  KYGV+V+IV VGYGY WWKGWKLPDMM
Sbjct: 61  ALLAQVNSLRQELQILASNRSITIVTASGTGKSKYGVVVIIVVVGYGYAWWKGWKLPDMM 120

Query: 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179
           FATRRSLSDAC+S+A+QLE+VYSSI+A +R LSS+I  VD  +++  E++ AT+EEV  L
Sbjct: 121 FATRRSLSDACSSIAKQLENVYSSIAATKRHLSSRIDRVDCSIDEFAELTSATKEEVFEL 180

Query: 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ- 238
           RG  K+IG +  SV+  VQ LESK+IEIEGKQDIT  G+ +LC  A  LEN R TE +Q 
Sbjct: 181 RGGMKMIGGDVASVQKAVQNLESKIIEIEGKQDITNEGLGRLCHYAWNLENSRTTERIQA 240

Query: 239 --SGSLHP 244
             S S  P
Sbjct: 241 SPSSSFRP 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326417169|gb|ADZ73426.1| B-zip transcription factor [Vitis pseudoreticulata]

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 144/248 (58%), Positives = 177/248 (71%), Gaps = 4/248 (1%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MAL  GKLT LVGAGI+ SVLAKEGR+S VS+   G  KI  K +KQDD      K  ND
Sbjct: 1   MALPLGKLTLLVGAGIVGSVLAKEGRMSDVSNFFSGAFKIALKQLKQDDSTSPTVKPKND 60

Query: 61  -LLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMM 119
            LLA+V+S++QEL  +  +  I   + SGTG  KYGV+V+IV VGYGY WWKGWKLPDMM
Sbjct: 61  ALLAQVNSLRQELQILASNRSITIVTASGTGKSKYGVVVIIVVVGYGYAWWKGWKLPDMM 120

Query: 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179
           FATRRSLSDAC+S+A+QLE+VYSSI+A +R LSS+I  VD  +++  E++ AT+EEV  L
Sbjct: 121 FATRRSLSDACSSIAKQLENVYSSIAATKRHLSSRIDRVDCSIDEFAELTSATKEEVFEL 180

Query: 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ- 238
           RG  K+IG +  SV+  VQ LESK+IEIEGKQDIT  G+ +LC  A  LEN R TE +Q 
Sbjct: 181 RGGMKMIGGDVASVQKAVQNLESKIIEIEGKQDITNEGLGRLCHYAWNLENSRTTERIQA 240

Query: 239 --SGSLHP 244
             S S  P
Sbjct: 241 SPSSSFRP 248

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289466339|gb|ADC94855.1| B-zip transcription factor [Vitis pseudoreticulata]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/248 (58%), Positives = 177/248 (71%), Gaps = 4/248 (1%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MAL  GKLT LVGAGI+ SVLAKEGR+S VS+   G  KI  K +KQDD      K  ND
Sbjct: 1   MALPLGKLTLLVGAGIVGSVLAKEGRMSDVSNFFSGAPKIALKQLKQDDSTSPTVKPKND 60

Query: 61  -LLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMM 119
            LLA+V+S++QEL  +  +  I   + SGTG  KYGV+V+IV VGYGY WWKGWKLPDMM
Sbjct: 61  ALLAQVNSLRQELQILASNRSITIVTASGTGKSKYGVVVIIVVVGYGYAWWKGWKLPDMM 120

Query: 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179
           FATRRSLSDAC+S+A+QLE+VYSSI+A +R LSS+I  VD  +++  E++ AT+EEV  L
Sbjct: 121 FATRRSLSDACSSIAKQLENVYSSIAATKRHLSSRIDRVDCSIDEFAELTSATKEEVFEL 180

Query: 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ- 238
           RG  K+IG +  SV+  VQ LESK+IEIEGKQDIT  G+ +LC  A  LEN R TE +Q 
Sbjct: 181 RGGMKMIGGDVASVQKAVQNLESKIIEIEGKQDITNEGLGRLCHYAWNLENSRTTERIQA 240

Query: 239 --SGSLHP 244
             S S  P
Sbjct: 241 SPSSSFRP 248

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445554|ref|XP_004140537.1| PREDICTED: uncharacterized protein LOC101217504 [Cucumis sativus]

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 137/267 (51%), Positives = 182/267 (68%), Gaps = 4/267 (1%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MA+ FGK+T LVGAGI+ SVLAKEGRL  V D V G  KI  + I +DD   S  K  ND
Sbjct: 1   MAIPFGKITILVGAGIVGSVLAKEGRLPYVQDFVSGAFKIALRRISRDDSSTSKTKPRND 60

Query: 61  -LLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMM 119
            L+A+V S+++EL  +  +  +   +  G G +KYGVI+++V VGYG +W KGWKLPDMM
Sbjct: 61  SLMAQVKSLREELQMLASNRQMTIVTTGGRGGRKYGVIILVVVVGYGIIWMKGWKLPDMM 120

Query: 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179
           FAT+RSL+DAC SVARQLE+VYSSI+A +R LSSK+ SVD+ +++ ++++  TQE+V+ L
Sbjct: 121 FATKRSLADACTSVARQLENVYSSIAATKRNLSSKMDSVDKSLDETLDVTTDTQEQVSEL 180

Query: 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ- 238
           RGRS+  G + +SV   VQTLE+KL   EGKQD T  GVKKLC+ A +LEN R  E  Q 
Sbjct: 181 RGRSETFGRDIKSVHHAVQTLENKLCTFEGKQDRTYEGVKKLCNYAIDLENKRTAERTQA 240

Query: 239 --SGSLHPLPLEPPSPSXXXXXXXIPM 263
             SG    +   PP+PS       +P+
Sbjct: 241 IPSGPSRQVLELPPTPSPKLQNRSLPI 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072554|ref|XP_002303779.1| predicted protein [Populus trichocarpa] gi|222841211|gb|EEE78758.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/248 (54%), Positives = 175/248 (70%), Gaps = 14/248 (5%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPG--------- 51
           MAL  GKLT LVGAGIL SVLAKEGRL  VS+ V G  KI  + +KQDD           
Sbjct: 1   MALPLGKLTILVGAGILGSVLAKEGRLPDVSNFVSGAFKIAFRQLKQDDSTSSVSKSSKP 60

Query: 52  PSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWK 111
           P+D      L+A+V+S++QEL  +  S  +   + +GTG+ KYGV++V+V VGYGYVWWK
Sbjct: 61  PND-----SLMAQVNSLRQELQMLASSRPVTIVTANGTGSNKYGVVIVVVVVGYGYVWWK 115

Query: 112 GWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA 171
           GWKLPDMMFATRRSLSDAC S+A+QLE+VY+SI + +R LSSKI  VD ++N + E++ +
Sbjct: 116 GWKLPDMMFATRRSLSDACTSIAQQLENVYASIRSTRRHLSSKIDGVDSNLNAVAELTAS 175

Query: 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENG 231
           TQE+V  LR  S  IG++ + VRD V+TLE K+  IEGKQD+TT GVK+LCD A  LEN 
Sbjct: 176 TQEKVIELREDSSRIGNDVRYVRDAVETLELKISRIEGKQDLTTQGVKRLCDYASSLENN 235

Query: 232 RPTELVQS 239
              E +Q+
Sbjct: 236 LLEENIQA 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578294|ref|XP_002530014.1| DNA binding protein, putative [Ricinus communis] gi|223530493|gb|EEF32376.1| DNA binding protein, putative [Ricinus communis]

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 127/241 (52%), Positives = 157/241 (65%), Gaps = 2/241 (0%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MAL  GKLT LVGAGIL SVLAKEGRL SVSD V G  KI  K IK  D   S +    D
Sbjct: 1   MALPLGKLTVLVGAGILGSVLAKEGRLPSVSDFVSGAFKIAFKQIKPQDSNSSSKSKPID 60

Query: 61  --LLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDM 118
             L+A+V+S+QQEL  +  +  I   + SGTGA KYG IV+IV VGYGYVWWKGWKLPDM
Sbjct: 61  ASLIAQVNSLQQELQLLASNRPITIVTASGTGAGKYGTIVLIVVVGYGYVWWKGWKLPDM 120

Query: 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178
           MFATRRSLSDAC S+A+QLE+VY SI + +R+LSS I  +D  ++++  ++  T+E+V  
Sbjct: 121 MFATRRSLSDACTSIAQQLENVYGSIRSTRRELSSNIEHMDATLDQVAALTANTREKVAE 180

Query: 179 LRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ 238
           L   S    ++ ++V   VQ L  K+  IE KQ  T  GVKKL D    LEN    E  Q
Sbjct: 181 LLEDSARYDNDVRNVHQTVQMLGQKISRIEEKQSFTMHGVKKLVDFTYNLENNLLQENTQ 240

Query: 239 S 239
           +
Sbjct: 241 A 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397746441|gb|AFO63288.1| bZIP9 [Tamarix hispida]

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/280 (48%), Positives = 177/280 (63%), Gaps = 29/280 (10%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           M+L  GKL  LVGAGI+ SVLAKEGR+  VSD + G  +I  K +KQ D  PS  K  +D
Sbjct: 1   MSLPLGKLGILVGAGIVGSVLAKEGRMPGVSDILSGAFQIALKPLKQSDSSPSSSKPKSD 60

Query: 61  -LLAEVSSVQQELSHVP--RSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPD 117
            L+A+++S++QEL  +   RS+ I TS GS  G + YG+I+VIV  GYGY+WWKGWKLPD
Sbjct: 61  ALMAQINSLRQELQLLSGGRSITIVTS-GS-RGGRPYGIIIVIVVAGYGYIWWKGWKLPD 118

Query: 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177
           + FATRR LSDAC+++A+QLE VYSS+SA +R LS KI  VD  +N   E   +TQ+EVT
Sbjct: 119 LSFATRRGLSDACSAIAKQLEQVYSSLSATRRDLSRKIERVDCSLNDCTENIASTQQEVT 178

Query: 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELV 237
            L+G  K  GD FQSVR +V+ LES++  ++GK++ T + V KL + A+ LE       +
Sbjct: 179 ELQGEVKTFGDSFQSVRHVVKALESRVSRMQGKEEATHVKVMKLVNTAKSLEGSAQAGFL 238

Query: 238 QSGSL--------HP----------LP------LEPPSPS 253
           Q  S         HP          LP      LEPPSPS
Sbjct: 239 QGSSTSASRPALEHPQMTTSSRAVSLPPCNRISLEPPSPS 278

Source: Tamarix hispida

Species: Tamarix hispida

Genus: Tamarix

Family: Tamaricaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580725|ref|XP_002531184.1| DNA binding protein, putative [Ricinus communis] gi|223529225|gb|EEF31199.1| DNA binding protein, putative [Ricinus communis]

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/215 (55%), Positives = 152/215 (70%), Gaps = 4/215 (1%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLI-KQDDPGPSDRKLFN 59
           M+L  GKLT LVGAGIL SVLAKEGRLSSV D V G  KI  K I ++D    S+ K  N
Sbjct: 1   MSLPLGKLTILVGAGILGSVLAKEGRLSSVPDFVSGAFKIAFKQISREDSTSSSNGKPIN 60

Query: 60  -DLLAEVSSVQQELSHVP--RSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLP 116
             L+A+V+S++QEL  +   R V I T+SG+G GA KYG IV+IV VGYGYVWWKGWKLP
Sbjct: 61  ASLMAQVNSLRQELQLLASNRPVTIVTASGTGAGAGKYGTIVLIVVVGYGYVWWKGWKLP 120

Query: 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176
           DMMFATRRSLSDAC S+A+QLE+VY+SI + +R+LSS I  +D  +N++  ++  T+E+V
Sbjct: 121 DMMFATRRSLSDACTSIAQQLENVYASIRSTKRELSSNIEHLDSTLNEVAALTSNTREKV 180

Query: 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211
           T L   S     + ++VR  VQTL  K+  IE KQ
Sbjct: 181 TELLEDSSRFDQDVRNVRQTVQTLGMKISRIEEKQ 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116789686|gb|ABK25342.1| unknown [Picea sitchensis]

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/250 (46%), Positives = 161/250 (64%), Gaps = 2/250 (0%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MAL  GKL  +VGAGI  SVLA EG+ S VSD   G  K++ K +K+D+    +      
Sbjct: 1   MALPIGKLAIVVGAGIAGSVLANEGQFSKVSDFFSGAFKVILKHLKEDESQLKEASNDTS 60

Query: 61  LLAEVSSVQQELSHVPRSVIIETSSG-SGTGAKKYGVIVVIVAV-GYGYVWWKGWKLPDM 118
           L+A+V+S++QEL  +  S  I   +G S +G   Y V V+++ V GYGY+WWKGWKL DM
Sbjct: 61  LMAQVNSLRQELKMLASSRSITVVTGNSQSGTTTYAVPVIVIGVAGYGYIWWKGWKLSDM 120

Query: 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178
           MFATRRSLS+AC SV +QL+ V +SI+AA+R LS +I  VD  +++  E++ AT++EV  
Sbjct: 121 MFATRRSLSEACASVGKQLDQVSTSITAAKRHLSLRIDCVDNSLDQCAELNAATKDEVFE 180

Query: 179 LRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ 238
           LRG  K IG + +SV+  VQ LE K+  IEGKQD+T  GV  LC    +LE  + T+++Q
Sbjct: 181 LRGDLKHIGFDVESVQRAVQGLEFKIGRIEGKQDLTNQGVYHLCQFVHKLEERKHTQIIQ 240

Query: 239 SGSLHPLPLE 248
             S     LE
Sbjct: 241 VSSSSKPALE 250

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
TAIR|locus:1005716745	344	AT1G24267 "AT1G24267" [Arabido	0.735	0.654	0.463	9.3e-43
TAIR|locus:2010602	334	AT1G04960 "AT1G04960" [Arabido	0.722	0.661	0.254	3.5e-20
TAIR|locus:2205734	304	AT1G27000 "AT1G27000" [Arabido	0.676	0.680	0.240	2.5e-17
TAIR|locus:2058832	276	AT2G02730 "AT2G02730" [Arabido	0.745	0.826	0.228	1.6e-15

TAIR|locus:1005716745 AT1G24267 "AT1G24267" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 107/231 (46%), Positives = 143/231 (61%)

Query:     1 MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
             MA+  GKLT L+GAG++ SVLAKEG L  VS  V G LK+V + +KQ++P  S  K  ND
Sbjct:     1 MAIPLGKLTILIGAGLVGSVLAKEGSLPDVSSFVSGALKMVFRQLKQEEPAKSASKPRND 60

Query:    61 -LLAEVSSVQQELSHVP--RSVIIETSSGSGTXXXXXXXXXXXXXXXXXXXWWKGWKLPD 117
              L+A+V+S++ ELS +   R + I T++GSG                    WWKGWKLPD
Sbjct:    61 TLMAQVNSLRHELSLLSSNRPITIVTTAGSG--GKKYGYIIIIGVIGYGYVWWKGWKLPD 118

Query:   118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177
             +MFATRRSLSDACNSV  Q++  Y+S+S  +++LSSKI  + R ++   EI Q T  EV 
Sbjct:   119 LMFATRRSLSDACNSVGSQIDGFYTSLSGTKKELSSKIDGMGRSLDANTEIIQDTGREVM 178

Query:   178 ILRGRSKLIGDEFQSVRDIVQTLESKLI-EIEGKQDITTLGVKKLCDRARE 227
              L+  ++ I D+ + V D V+ L  KLI  IEG QDIT  GV  L  + RE
Sbjct:   179 ELQRGTENIKDDVKFVFDAVENLVRKLIYRIEGNQDITLKGVGALHAQVRE 229

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

TAIR|locus:2010602 AT1G04960 "AT1G04960" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 57/224 (25%), Positives = 110/224 (49%)

Query:    15 GILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSH 74
             G+  S++ + GRLS +   +   L     +  +  P   D  L    + ++++  +EL+ 
Sbjct:    36 GVSGSIVLRHGRLSDLIAQLQDLLNGAQGV--ESTPFKYDGALLAAQIRQLANEIKELTM 93

Query:    75 VPRSVIIETSSGSGTXXXXXXXXXXXXXXXXXXXWWKGWKLPDMMFATRRSLSDACNSVA 134
                  I    S S                     WWKGW   D MF T+++++DA  SV+
Sbjct:    94 TNPVTIFNGDSNSSGYASYLVPAAAVGAMGYCYMWWKGWSFSDAMFVTKKNMADAVASVS 153

Query:   135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194
             +QL+D+  ++++ ++ LS K+ ++D  V +  E S+    +VT +R     IG +F+ + 
Sbjct:   154 KQLDDLSDTLASTRKHLSQKLATLDWKVEEQNETSKMILSDVTEMRSSISQIGFDFKQLN 213

Query:   195 DIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ 238
             +++  +E K+  +E KQD+T  G+  LC  A  +++   T++ Q
Sbjct:   214 EMISGIEGKIESLESKQDVTLSGLWHLCQVAG-VKDSTSTKVFQ 256

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205734 AT1G27000 "AT1G27000" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 51/212 (24%), Positives = 102/212 (48%)

Query:     7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVS 66
             ++  L GAG   +++ K G+LS   D +G    +V  + K  +    D  + + + A+V 
Sbjct:    11 RIFLLAGAGYTGTIMMKNGKLS---DLLGELQSLVKGMEKSGEGSEGDSDVSDAIAAQVR 67

Query:    67 SVQQELSHVPRSVIIETSSG-SGTXXXXXXX-XXXXXXXXXXXXWWKGWKLPDMMFATRR 124
              +  E+  +     I   +G SG                     WWKG    D+M+ T+ 
Sbjct:    68 RLAMEIRQLASQQHITVMNGVSGANLQALAVPAAALGALGYGYMWWKGLSFTDLMYVTKA 127

Query:   125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184
             +++ A  ++ + LE V  +++AA+R L+ +I ++D  V K +++S+    +V   R    
Sbjct:   128 NMAAAVANLTKNLEQVSETLAAAKRHLTQRIQNLDDKVEKQIDLSKEINSQVISARENIS 187

Query:   185 LIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216
              +  + +S+ +++  L+ KL  +E KQD+T +
Sbjct:   188 SLEMDLESLHNLITGLDGKLDTLEYKQDVTNV 219

GO:0003677 "DNA binding" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2058832 AT2G02730 "AT2G02730" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 53/232 (22%), Positives = 104/232 (44%)

Query:     7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVS 66
             K+  L GAG  +++L K G+++   D +G    +V +  K  D    D       +  ++
Sbjct:    11 KILILAGAGYTSTILVKNGKMA---DILGELQALVKRFEKSGDHVDDDSDAMTTQMQRLA 67

Query:    67 SVQQELSHVPRSVIIETSSGSGTXXXXXXXXXXXXXXXXXXXWWKGWKLPDMMFATRRSL 126
                ++L+   R + +   +                       W+KG    D+M  T+R++
Sbjct:    68 MEVRQLAS-SRQITVMNGAQGADFTPFIVPAATLGALGYGYMWFKGISFSDIMCVTKRNM 126

Query:   127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186
              +A +++ + L+ V  +I  A++ LS ++  VD  ++   ++ +  Q+ V +       I
Sbjct:   127 ENAVSNLTKHLDTVSEAILNAKKHLSQRLQKVDDKLDLQKDLLKGVQDNVGLALEDLANI 186

Query:   187 GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ 238
             GD+F ++  I   +  KL  IE KQ+I  +G+  LCD      +  P  L+Q
Sbjct:   187 GDDFDAMHSIFGGMGGKLDSIEYKQNIANMGLIYLCDSLGGENHKMPDILMQ 238


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      306       265   0.00093  114 3  11 22  0.36    34
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  156 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.09u 0.12s 21.21t   Elapsed:  00:00:01
  Total cpu time:  21.09u 0.12s 21.21t   Elapsed:  00:00:01
  Start:  Fri May 10 15:26:32 2013   End:  Fri May 10 15:26:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002774001 SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (282 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	306
pfam07889	125	pfam07889, DUF1664, Protein of unknown function (D	8e-47

>gnl|CDD|203795 pfam07889, DUF1664, Protein of unknown function (DUF1664)

 Score =  153 bits (388), Expect = 8e-47
 Identities = 57/126 (45%), Positives = 87/126 (69%), Gaps = 3/126 (2%)

Query: 88  GTGAKKYGVI--VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSIS 145
           G+G +KY ++    + A+GYGY+WWKGW   D+MF T+R++SDA  SV +QLE V  SI+
Sbjct: 1   GSG-RKYLIVPAAALGALGYGYMWWKGWSFSDLMFVTKRNMSDAVASVGKQLEKVSESIA 59

Query: 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205
           AA++ LS +I ++D  +++  EIS++T++EVT +R     IG++ +SV   V+ LE KL 
Sbjct: 60  AAKKHLSQRIDNLDDKLDEQKEISESTRDEVTEIREDLSNIGEDVKSVHQAVEGLEGKLD 119

Query: 206 EIEGKQ 211
            IE KQ
Sbjct: 120 SIEYKQ 125

The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	100.0
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	97.09
PF04375	372	HemX: HemX; InterPro: IPR007470 The majority of pr	95.4
PRK10884	206	SH3 domain-containing protein; Provisional	94.81
PF01519	102	DUF16: Protein of unknown function DUF16; InterPro	94.43
PRK14011	144	prefoldin subunit alpha; Provisional	92.83
PHA02562	562	46 endonuclease subunit; Provisional	92.76
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	92.67
PF00038	312	Filament: Intermediate filament protein; InterPro:	92.44
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	92.16
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	92.04
PF14712	92	Snapin_Pallidin: Snapin/Pallidin	91.32
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	91.27
PRK03947	140	prefoldin subunit alpha; Reviewed	91.19
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.18
PRK11637	428	AmiB activator; Provisional	91.18
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	91.17
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	90.69
PRK11637	428	AmiB activator; Provisional	90.63
PRK10920	390	putative uroporphyrinogen III C-methyltransferase;	89.54
smart00502	127	BBC B-Box C-terminal domain. Coiled coil region C-	89.46
PF00015	213	MCPsignal: Methyl-accepting chemotaxis protein (MC	89.32
PF10158	131	LOH1CR12: Tumour suppressor protein; InterPro: IPR	89.2
PF00015	213	MCPsignal: Methyl-accepting chemotaxis protein (MC	88.51
COG4942	420	Membrane-bound metallopeptidase [Cell division and	88.16
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	88.16
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	88.05
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	87.89
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	87.53
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	87.02
PRK04778	569	septation ring formation regulator EzrA; Provision	86.76
PF06419	618	COG6: Conserved oligomeric complex COG6; InterPro:	86.4
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	86.34
PRK06975	656	bifunctional uroporphyrinogen-III synthetase/uropo	85.99
PF05597	132	Phasin: Poly(hydroxyalcanoate) granule associated	85.78
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	85.71
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	85.69
PF04513	140	Baculo_PEP_C: Baculovirus polyhedron envelope prot	85.19
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	85.06
PHA02562	562	46 endonuclease subunit; Provisional	84.21
PF05816	333	TelA: Toxic anion resistance protein (TelA); Inter	83.99
PF01442	202	Apolipoprotein: Apolipoprotein A1/A4/E domain; Int	83.71
PF10046	99	BLOC1_2: Biogenesis of lysosome-related organelles	83.7
COG4942	420	Membrane-bound metallopeptidase [Cell division and	83.47
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	83.28
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	82.88
PRK09039	343	hypothetical protein; Validated	80.5
PF10241	88	KxDL: Uncharacterized conserved protein; InterPro:	80.46
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	80.23
PRK04778	569	septation ring formation regulator EzrA; Provision	80.16

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=100.00  E-value=1.2e-57  Score=384.79  Aligned_cols=122  Identities=47%  Similarity=0.776  Sum_probs=116.4

Q ss_pred             CCceehhh--hhhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 021850           90 GAKKYGVI--VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE  167 (306)
Q Consensus        90 Gg~~~~~i--vviGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~e  167 (306)
                      |+..|.++  +++||+|||||||||||||||||||||||+|||++|+|||||||++|++|||||+||||+||+|||+|.|
T Consensus         3 g~~~~~i~paa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~e   82 (126)
T PF07889_consen    3 GGWSSLIVPAAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKE   82 (126)
T ss_pred             CCccchhhHHHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            33334443  6899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850          168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ  211 (306)
Q Consensus       168 is~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQ  211 (306)
                      ++++|++||+++++|+++|++|+++||++|++||+||++||+||
T Consensus        83 i~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q  126 (126)
T PF07889_consen   83 ISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ  126 (126)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999998

The region featured in this family is approximately 100 amino acids long.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=97.09  E-value=0.0012  Score=54.41  Aligned_cols=89  Identities=17%  Similarity=0.328  Sum_probs=52.9

Q ss_pred             eehhhhhhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 021850           93 KYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT  172 (306)
Q Consensus        93 ~~~~ivviGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~i  172 (306)
                      .++.|.++.+++|++.||+   ++. =||+|..+..                      |.+|+++.|.++++...-.+..
T Consensus         8 ~w~ii~a~~~~~~~~~~~~---l~~-~~a~~~~~~~----------------------l~~~~~~~~~Rl~~lE~~l~~L   61 (106)
T PF10805_consen    8 NWGIIWAVFGIAGGIFWLW---LRR-TYAKREDIEK----------------------LEERLDEHDRRLQALETKLEHL   61 (106)
T ss_pred             CcHHHHHHHHHHHHHHHHH---HHH-hhccHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhC
Confidence            3556667777788888886   322 3666655443                      3344444444444444444444


Q ss_pred             --HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850          173 --QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI  207 (306)
Q Consensus       173 --k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i  207 (306)
                        ++++..++..++++.+|++.+...+++++..++.+
T Consensus        62 Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL   98 (106)
T PF10805_consen   62 PTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL   98 (106)
T ss_pred             CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence              66777777777777777777776666666655544

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2

Probab=95.40  E-value=0.055  Score=52.99  Aligned_cols=11  Identities=36%  Similarity=0.845  Sum_probs=7.8

Q ss_pred             hhhheeeeEEe
Q 021850          100 IVAVGYGYVWW  110 (306)
Q Consensus       100 iGavGYgYmwW  110 (306)
                      +.++|+||.||
T Consensus        40 ~~alg~~~~~~   50 (372)
T PF04375_consen   40 ALALGAGGWYW   50 (372)
T ss_pred             HHHHHHHHHHH
Confidence            36678887767

1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.81  E-value=0.83  Score=42.05  Aligned_cols=98  Identities=13%  Similarity=0.227  Sum_probs=72.4

Q ss_pred             eeeeEEe----cccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 021850          104 GYGYVWW----KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL  179 (306)
Q Consensus       104 GYgYmwW----KGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v  179 (306)
                      ||+++.-    .|| +.+=+-.+..++..-+..+-++|+.+.+.|+.+.....+|-..+..++++....+..+++|-.++
T Consensus        66 ~w~~Vr~~~G~~GW-V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L  144 (206)
T PRK10884         66 NYAQIRDSKGRTAW-IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL  144 (206)
T ss_pred             CEEEEEeCCCCEEe-EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6888874    378 55555566678899999999999999999999999999999999998888766666666666555


Q ss_pred             hhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850          180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEG  209 (306)
Q Consensus       180 ~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~  209 (306)
                      +..+       ...+.-++.|+.+++.+..
T Consensus       145 ~~~l-------~~~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884        145 KNQL-------IVAQKKVDAANLQLDDKQR  167 (206)
T ss_pred             HHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            5444       5555555555566555544

>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function

Probab=94.43  E-value=0.28  Score=41.22  Aligned_cols=82  Identities=18%  Similarity=0.276  Sum_probs=44.4

Q ss_pred             hhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021850          119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ  198 (306)
Q Consensus       119 MyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~  198 (306)
                      =|||++-+...=.+--.-|..+-..+...  -...+|+.|..+.+.|-|-++..+.++       ..-+.-++.|-....
T Consensus        21 ~YVT~kef~efKd~~~q~L~kiE~~~~~l--~qgeqI~kL~e~V~~QGEqIkel~~e~-------k~qgktL~~I~~~L~   91 (102)
T PF01519_consen   21 KYVTHKEFDEFKDSNNQRLTKIENKLDQL--AQGEQINKLTEKVDKQGEQIKELQVEQ-------KAQGKTLQLILKTLQ   91 (102)
T ss_dssp             TB-BHHHHHHH---HTTB-BHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            38999988865544444444444444422  334444444444444444444444444       455666677777777


Q ss_pred             hHHHHHHHHhh
Q 021850          199 TLESKLIEIEG  209 (306)
Q Consensus       199 ~Le~Ki~~ie~  209 (306)
                      .+..+|++||+
T Consensus        92 ~inkRLD~~E~  102 (102)
T PF01519_consen   92 SINKRLDKMES  102 (102)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHhhccC
Confidence            88899998874

It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.

>PRK14011 prefoldin subunit alpha; Provisional

Probab=92.83  E-value=0.58  Score=41.01  Aligned_cols=54  Identities=19%  Similarity=0.231  Sum_probs=46.1

Q ss_pred             hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850           99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  178 (306)
Q Consensus        99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~  178 (306)
                      ++..||.||.==|                               ++..|+.+|..||+.|+..+++..+..+.+.+++.+
T Consensus        72 VlVdIGtGy~VEk-------------------------------~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~  120 (144)
T PRK14011         72 AILGVGSDIYLEK-------------------------------DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITK  120 (144)
T ss_pred             EEEEccCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999997555                               568899999999999999999999999999888877


Q ss_pred             hhhch
Q 021850          179 LRGRS  183 (306)
Q Consensus       179 v~~dl  183 (306)
                      ++..+
T Consensus       121 l~~~L  125 (144)
T PRK14011        121 LRKEL  125 (144)
T ss_pred             HHHHH
Confidence            76554

>PHA02562 46 endonuclease subunit; Provisional

Probab=92.76  E-value=1.2  Score=44.38  Aligned_cols=86  Identities=12%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850          132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ  211 (306)
Q Consensus       132 svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQ  211 (306)
                      .+..+++++...+...++.+...|+.+..++++...-...++.++..++..+.+++.+++.+...+..++.++..++.+-
T Consensus       192 ~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l  271 (562)
T PHA02562        192 HIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI  271 (562)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555566666777888888888888888888999999999999999888888888888888888776665


Q ss_pred             hhHhHH
Q 021850          212 DITTLG  217 (306)
Q Consensus       212 d~tn~G  217 (306)
                      ......
T Consensus       272 ~~~~~~  277 (562)
T PHA02562        272 EQFQKV  277 (562)
T ss_pred             HHHHHH
Confidence            544433

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=92.67  E-value=0.82  Score=37.65  Aligned_cols=55  Identities=22%  Similarity=0.346  Sum_probs=47.7

Q ss_pred             hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850           99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  178 (306)
Q Consensus        99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~  178 (306)
                      ++.-+|.||+=.+                               ++..|+++|..||+.++..+++..+..+..+++++.
T Consensus        70 v~v~iG~g~~vE~-------------------------------~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~  118 (126)
T TIGR00293        70 VLVSIGSGYYVEK-------------------------------DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ  118 (126)
T ss_pred             EEEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6888999999888                               458999999999999999999999999988888877


Q ss_pred             hhhchh
Q 021850          179 LRGRSK  184 (306)
Q Consensus       179 v~~dls  184 (306)
                      +...+.
T Consensus       119 i~~~l~  124 (126)
T TIGR00293       119 LEQEAQ  124 (126)
T ss_pred             HHHHHh
Confidence            766543

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=92.44  E-value=4.7  Score=37.61  Aligned_cols=91  Identities=24%  Similarity=0.283  Sum_probs=77.9

Q ss_pred             HHHHHHHHhhhhhh-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850          126 LSDACNSVARQLED-VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL  204 (306)
Q Consensus       126 msnAv~svtKqLeq-Vs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki  204 (306)
                      |++|...|-.+-+. +...-..+......+|+.+........+-....++|+.+++..+.....++..++.....||..|
T Consensus       167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l  246 (312)
T PF00038_consen  167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL  246 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence            88999999888774 44556688889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhHhH
Q 021850          205 IEIEGKQDITTL  216 (306)
Q Consensus       205 ~~ie~kQd~tn~  216 (306)
                      ..++..-.....
T Consensus       247 ~~le~~~~~~~~  258 (312)
T PF00038_consen  247 RELEQRLDEERE  258 (312)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            988765544433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=92.16  E-value=0.2  Score=49.37  Aligned_cols=86  Identities=17%  Similarity=0.246  Sum_probs=28.7

Q ss_pred             hHHHHHHHHhhhhhhHHHHHHHHH---HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850          125 SLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE  201 (306)
Q Consensus       125 nmsnAv~svtKqLeqVs~sL~~tK---khLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le  201 (306)
                      +|+.++.++...|..++..|++-+   .+|+..|..+...+.+.....-.++..|..+..|+++.+.||-..--.|..||
T Consensus        67 ~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe  146 (326)
T PF04582_consen   67 DLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLE  146 (326)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHH
Confidence            445555555555555555544433   34556666666666666666677777777777777777777777777777777


Q ss_pred             HHHHHHhhh
Q 021850          202 SKLIEIEGK  210 (306)
Q Consensus       202 ~Ki~~ie~k  210 (306)
                      .||..+|..
T Consensus       147 ~RV~~LEs~  155 (326)
T PF04582_consen  147 SRVKALESG  155 (326)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhcC
Confidence            777766643

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=92.04  E-value=1.8  Score=35.02  Aligned_cols=83  Identities=14%  Similarity=0.197  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHH
Q 021850          140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK  219 (306)
Q Consensus       140 Vs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~  219 (306)
                      |..+|.++-++|.+.|++|+..++.-.+.....    .++...+..++.|-..+-+-+.+.+.+...+|..|.-....+.
T Consensus         2 ~~~~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~   77 (89)
T PF13747_consen    2 VTYSLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD   77 (89)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            456777788888888888888877776654443    4555566667777777777777777888888887777766666


Q ss_pred             HHHHHHH
Q 021850          220 KLCDRAR  226 (306)
Q Consensus       220 ~LC~f~~  226 (306)
                      +..+-+.
T Consensus        78 ~a~e~Ir   84 (89)
T PF13747_consen   78 SAIETIR   84 (89)
T ss_pred             HHHHHHH
Confidence            6655443

>PF14712 Snapin_Pallidin: Snapin/Pallidin

Probab=91.32  E-value=3.1  Score=32.60  Aligned_cols=72  Identities=13%  Similarity=0.237  Sum_probs=56.2

Q ss_pred             hhhhHHHHH---HHHHHHHHHhhhhhhhhHHHHHHHHHHH--HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850          136 QLEDVYSSI---SAAQRQLSSKITSVDRDVNKIVEISQAT--QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE  208 (306)
Q Consensus       136 qLeqVs~sL---~~tKkhLsqRId~vD~kLDeq~eis~~i--k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie  208 (306)
                      .|+.+.+.|   .....+|..+|+.+..+|+++.++....  -+.+. -...+.+|..+|.+++..+..|..|+..++
T Consensus        15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~   91 (92)
T PF14712_consen   15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ   91 (92)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            445555444   4556789999999999999998866544  33444 778889999999999999999999988764

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=91.27  E-value=1.3  Score=36.66  Aligned_cols=56  Identities=21%  Similarity=0.348  Sum_probs=45.7

Q ss_pred             hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850           99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  178 (306)
Q Consensus        99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~  178 (306)
                      ++.-+|.||+=.+                               ++..|++.+..||+.+...+++..+....++++++.
T Consensus        71 v~v~iG~g~~vE~-------------------------------~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~  119 (129)
T cd00584          71 VLVDLGTGYYVEK-------------------------------DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINT  119 (129)
T ss_pred             EEEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788899998776                               567788999999999999998888888888888877


Q ss_pred             hhhchhh
Q 021850          179 LRGRSKL  185 (306)
Q Consensus       179 v~~dls~  185 (306)
                      +...+.+
T Consensus       120 ~~~~l~~  126 (129)
T cd00584         120 LEAELQE  126 (129)
T ss_pred             HHHHHHH
Confidence            7766543

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=91.19  E-value=1.6  Score=36.73  Aligned_cols=54  Identities=24%  Similarity=0.330  Sum_probs=40.0

Q ss_pred             hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850           99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  178 (306)
Q Consensus        99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~  178 (306)
                      |+.-+|+||+=.+                               .+..|++.|..||+.++..+++..+....+++++..
T Consensus        78 V~v~lG~g~~vE~-------------------------------~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~  126 (140)
T PRK03947         78 VIVSLGAGYSAEK-------------------------------DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQ  126 (140)
T ss_pred             EEEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999888                               457788888888888888887776666666666655


Q ss_pred             hhhch
Q 021850          179 LRGRS  183 (306)
Q Consensus       179 v~~dl  183 (306)
                      +...+
T Consensus       127 ~~~~l  131 (140)
T PRK03947        127 LAQEL  131 (140)
T ss_pred             HHHHH
Confidence            54444

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.18  E-value=5.2  Score=36.92  Aligned_cols=80  Identities=16%  Similarity=0.197  Sum_probs=62.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhH
Q 021850          135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT  214 (306)
Q Consensus       135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~t  214 (306)
                      .++.++......+..+..+||+..++.-++..+-.++.++|+..++.-..+...-+++.+..+..|+.+++.++..+..-
T Consensus        24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l  103 (251)
T PF11932_consen   24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL  103 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666777889999999999888888888888888888888888888888888888888888888777654433

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK11637 AmiB activator; Provisional

Probab=91.18  E-value=2.3  Score=42.04  Aligned_cols=81  Identities=11%  Similarity=0.154  Sum_probs=49.4

Q ss_pred             hHHHHHHHHhhhhhhHHHHHH---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850          125 SLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE  201 (306)
Q Consensus       125 nmsnAv~svtKqLeqVs~sL~---~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le  201 (306)
                      ...+=...+-+++++....+.   ..++++.+.|+.++.++++..+-...++.++.++..+++....++...+.-+..+.
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~  123 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE  123 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555554   34445556777777777777776667777777777777777766666666666655


Q ss_pred             HHHH
Q 021850          202 SKLI  205 (306)
Q Consensus       202 ~Ki~  205 (306)
                      ..+.
T Consensus       124 ~~l~  127 (428)
T PRK11637        124 RLLA  127 (428)
T ss_pred             HHHH
Confidence            5443

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=91.17  E-value=0.72  Score=37.24  Aligned_cols=56  Identities=21%  Similarity=0.303  Sum_probs=43.9

Q ss_pred             hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850           99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  178 (306)
Q Consensus        99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~  178 (306)
                      ++.-+|.||+=++                               ++..|.+.+..||+.+.+++++..+-.+.+++++..
T Consensus        61 vlV~lG~~~~vE~-------------------------------s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~  109 (120)
T PF02996_consen   61 VLVSLGAGYYVEM-------------------------------SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQ  109 (120)
T ss_dssp             EEEEEETTEEEEE-------------------------------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEeeCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999888                               457888889999999988888887777777777766


Q ss_pred             hhhchhh
Q 021850          179 LRGRSKL  185 (306)
Q Consensus       179 v~~dls~  185 (306)
                      +...+++
T Consensus       110 ~~~~l~~  116 (120)
T PF02996_consen  110 LEQTLQQ  116 (120)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555543

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=90.69  E-value=4.5  Score=35.01  Aligned_cols=38  Identities=16%  Similarity=0.336  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 021850          140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT  177 (306)
Q Consensus       140 Vs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~  177 (306)
                      +++-+=.|||.|+.=...|..+||+.-+-...+|++++
T Consensus        30 ~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLs   67 (126)
T PF07889_consen   30 FSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLS   67 (126)
T ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555567777777777777777776666666666543

The region featured in this family is approximately 100 amino acids long.

>PRK11637 AmiB activator; Provisional

Probab=90.63  E-value=2.1  Score=42.29  Aligned_cols=77  Identities=13%  Similarity=0.185  Sum_probs=36.3

Q ss_pred             HHhhhhhhHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850          132 SVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE  208 (306)
Q Consensus       132 svtKqLeqVs~sL~~tKkhLs---qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie  208 (306)
                      .+-++|+++-..|...++.+.   .++..+..++++...=...+.+++.+++.+++.+..+++.++.-+..++.+|+..+
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~  123 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE  123 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555554444444   44444444444444444444444444444444444444444444444444444333

>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional

Probab=89.54  E-value=0.95  Score=45.44  Aligned_cols=67  Identities=12%  Similarity=0.266  Sum_probs=34.2

Q ss_pred             CCceehhh--hhhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 021850           90 GAKKYGVI--VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK  164 (306)
Q Consensus        90 Gg~~~~~i--vviGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDe  164 (306)
                      +|...+++  +++-++|+||-|| |.       --.......-+.+..+|+.......+.+..|.+.+..++.++.+
T Consensus        35 ~g~~l~~~aili~la~g~g~y~~-~~-------qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~  103 (390)
T PRK10920         35 TGLVLSAVAIAIALAAGAGLYYH-GK-------QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQ  103 (390)
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444543  2345777777666 21       22222345555566666666555555555555555554444444

>smart00502 BBC B-Box C-terminal domain

Probab=89.46  E-value=5.4  Score=31.27  Aligned_cols=28  Identities=29%  Similarity=0.291  Sum_probs=17.9

Q ss_pred             hhHhHHHHHHHHHHHhhhc-CCCcccccc
Q 021850          212 DITTLGVKKLCDRARELEN-GRPTELVQS  239 (306)
Q Consensus       212 d~tn~GV~~LC~f~~~le~-~~~~~~~Q~  239 (306)
                      ......+..+|.|++..=+ +...++.|.
T Consensus        85 ~~~l~~l~~~~~~~e~~l~~~~~~e~L~~  113 (127)
T smart00502       85 TQKQEKLSHAINFTEEALNSGDPTELLLS  113 (127)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            3456677888888875443 455566654

Coiled coil region C-terminal to (some) B-Box domains

>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []

Probab=89.32  E-value=12  Score=31.99  Aligned_cols=17  Identities=6%  Similarity=0.368  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHhcC
Q 021850           59 NDLLAEVSSVQQELSHV   75 (306)
Q Consensus        59 ~~L~aQV~~LaqElr~L   75 (306)
                      +++...++.++.+.+.|
T Consensus        43 ~~~~~~i~~ia~qt~lL   59 (213)
T PF00015_consen   43 SEILSLINEIAEQTNLL   59 (213)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHh
Confidence            34777888888888887

Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.

>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []

Probab=89.20  E-value=7.7  Score=33.59  Aligned_cols=50  Identities=20%  Similarity=0.399  Sum_probs=42.4

Q ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 021850          124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ  173 (306)
Q Consensus       124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik  173 (306)
                      |.+-+-|.....||.+-.+.++....+|.+||-.+|..+....+....-+
T Consensus        27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erq   76 (131)
T PF10158_consen   27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQ   76 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999998776655444333

The exact function of these proteins is not known.

>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []

Probab=88.51  E-value=15  Score=31.46  Aligned_cols=75  Identities=15%  Similarity=0.188  Sum_probs=28.6

Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850          131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI  205 (306)
Q Consensus       131 ~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~  205 (306)
                      ..++.+-.+....+...-+++...++.+-..+++..+......+.+......+..|...++.+...+..+...+.
T Consensus        85 r~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~  159 (213)
T PF00015_consen   85 RKLAEQTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAE  159 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHH
Confidence            333333333333333333344444333333333333333333333333333333344444444444433333333

Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=88.16  E-value=4.2  Score=41.57  Aligned_cols=83  Identities=17%  Similarity=0.223  Sum_probs=62.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhH
Q 021850          135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT  214 (306)
Q Consensus       135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~t  214 (306)
                      ++|+|....|++..    ++|....++..+...-.+..++++..+..-+.++..|++.++..+..++.++..++..+ ..
T Consensus        38 ~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~  112 (420)
T COG4942          38 KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-RE  112 (420)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HH
Confidence            77777777776544    44555566666666667777788888888888889999999999999999998887655 77


Q ss_pred             hHHHHHHH
Q 021850          215 TLGVKKLC  222 (306)
Q Consensus       215 n~GV~~LC  222 (306)
                      ..++....
T Consensus       113 qr~~La~~  120 (420)
T COG4942         113 QRRRLAEQ  120 (420)
T ss_pred             HHHHHHHH
Confidence            77766554

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=88.16  E-value=4.5  Score=31.67  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=15.5

Q ss_pred             HHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850          176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEI  207 (306)
Q Consensus       176 V~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i  207 (306)
                      ++++.+|+...-+.++.+-+.|..++..+..+
T Consensus        56 ~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l   87 (90)
T PF06103_consen   56 TNELLEDVNEKLEKVDPVFEAVADLGESVSEL   87 (90)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33333344444444455555555555555543

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=88.05  E-value=2.2  Score=35.27  Aligned_cols=65  Identities=11%  Similarity=0.235  Sum_probs=52.1

Q ss_pred             HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh--hhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHH
Q 021850          152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI--GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD  223 (306)
Q Consensus       152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~i--g~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~  223 (306)
                      ..+++.+++++++       ..+-++.+...+.++  .+|+..++..+..+++++..+++.=+.-++-+.+|.+
T Consensus        34 ~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE  100 (106)
T PF10805_consen   34 REDIEKLEERLDE-------HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE  100 (106)
T ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666654       467788888888888  9999999999999999999999988877887777765

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=87.89  E-value=8.6  Score=33.41  Aligned_cols=62  Identities=16%  Similarity=0.223  Sum_probs=48.8

Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850          150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ  211 (306)
Q Consensus       150 hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQ  211 (306)
                      .|+.||+-|...||+...--+.+.+.+.++....+++..-+..+..--..+|.|++.++.+-
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~  138 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY  138 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            36778888888888888888888888887777788888888888888888888888777653

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=87.53  E-value=7.5  Score=43.86  Aligned_cols=98  Identities=15%  Similarity=0.209  Sum_probs=76.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhH
Q 021850          135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT  214 (306)
Q Consensus       135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~t  214 (306)
                      +..++.-..+...=+...+++...+.++-+..+-.+.+++|++.-...+..+..|++..+..+..++.++.+++..-+..
T Consensus       291 ~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~  370 (1074)
T KOG0250|consen  291 KKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKL  370 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555556666777777777777777888888888888999999999999999999999999999888888


Q ss_pred             hHHHHHHHHHHHhhhcCC
Q 021850          215 TLGVKKLCDRARELENGR  232 (306)
Q Consensus       215 n~GV~~LC~f~~~le~~~  232 (306)
                      -.-+.+||.-+..++..-
T Consensus       371 k~~~d~l~k~I~~~~~~~  388 (1074)
T KOG0250|consen  371 KKEVDRLEKQIADLEKQT  388 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            889999998887665543

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=87.02  E-value=4.2  Score=32.92  Aligned_cols=43  Identities=16%  Similarity=0.319  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021850          143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL  185 (306)
Q Consensus       143 sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~  185 (306)
                      ++..|.+.|..||+.++..+++..+....+++++..++..+.+
T Consensus        84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~  126 (129)
T cd00890          84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ  126 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455678888888888888888877777777777766665543

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=86.76  E-value=12  Score=38.73  Aligned_cols=120  Identities=13%  Similarity=0.273  Sum_probs=75.2

Q ss_pred             eeeeEEecccCCCchhhhhh--------------------hhHHHHHHHHhhhhhhHHHHHH---HHHHHHHHhhhhhhh
Q 021850          104 GYGYVWWKGWKLPDMMFATR--------------------RSLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDR  160 (306)
Q Consensus       104 GYgYmwWKGws~SDlMyVTK--------------------RnmsnAv~svtKqLeqVs~sL~---~tKkhLsqRId~vD~  160 (306)
                      ||-=|-=+|..|+++=.-++                    ......+..+.++++++|+.|.   .||+...+.+..+.+
T Consensus       238 gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~  317 (569)
T PRK04778        238 GYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPD  317 (569)
T ss_pred             HHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            44445666777876532222                    2344566778888888888887   577777777777777


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhc----------hhhhhhHHHHHH---------------------HHHHhHHHHHHHHhh
Q 021850          161 DVNKIVEISQATQEEVTILRGR----------SKLIGDEFQSVR---------------------DIVQTLESKLIEIEG  209 (306)
Q Consensus       161 kLDeq~eis~~ik~eV~~v~~d----------ls~ig~Di~~v~---------------------~~V~~Le~Ki~~ie~  209 (306)
                      .++...+-...++.|+..++..          +..+..++..+.                     .....+..++..++.
T Consensus       318 ~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~  397 (569)
T PRK04778        318 FLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEK  397 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777666666655          333444443333                     344455566667777


Q ss_pred             hhhhHhHHHHHHHH
Q 021850          210 KQDITTLGVKKLCD  223 (306)
Q Consensus       210 kQd~tn~GV~~LC~  223 (306)
                      .|.--..-|..|+.
T Consensus       398 eq~ei~e~l~~Lrk  411 (569)
T PRK04778        398 EQEKLSEMLQGLRK  411 (569)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77666666666654

>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation

Probab=86.40  E-value=5.5  Score=41.85  Aligned_cols=86  Identities=17%  Similarity=0.305  Sum_probs=65.1

Q ss_pred             CCchhhh----hhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 021850          115 LPDMMFA----TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF  190 (306)
Q Consensus       115 ~SDlMyV----TKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di  190 (306)
                      +++..|.    |||||...+   -+.+=..+..+-+.=..+..+|+++...+++..++...+.+.+...+.+...+-.++
T Consensus         6 L~~~~~~nt~~aRr~LR~~i---E~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~   82 (618)
T PF06419_consen    6 LSEFGFENTLEARRNLRSDI---EKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEA   82 (618)
T ss_pred             hcccccCCcHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666    888887654   455666666777777788889999999999999999999999988888887777777


Q ss_pred             HHHHHHHHhHHHH
Q 021850          191 QSVRDIVQTLESK  203 (306)
Q Consensus       191 ~~v~~~V~~Le~K  203 (306)
                      ..++.--..++.|
T Consensus        83 ~~L~~~~~~~~~k   95 (618)
T PF06419_consen   83 SELREQKEELELK   95 (618)
T ss_pred             HHHHHHHHHHHHH
Confidence            7766444444433

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=86.34  E-value=23  Score=31.32  Aligned_cols=96  Identities=22%  Similarity=0.334  Sum_probs=46.7

Q ss_pred             hhhhhhHHHHHHHHhhhhhhHHHHHHHHHHH----HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhh-hhhHHHHHH
Q 021850          120 FATRRSLSDACNSVARQLEDVYSSISAAQRQ----LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL-IGDEFQSVR  194 (306)
Q Consensus       120 yVTKRnmsnAv~svtKqLeqVs~sL~~tKkh----LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~-ig~Di~~v~  194 (306)
                      +|||..+.+..-..-..+.++-..+....++    +....+.|...+|..   -+.+++|+..++.++.- |..+=..++
T Consensus        43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l---~~~L~~ei~~l~a~~klD~n~eK~~~r  119 (177)
T PF07798_consen   43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKL---RQELREEINKLRAEVKLDLNLEKGRIR  119 (177)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            6888888877777666666666666555444    223333333333322   23445555555544320 111111344


Q ss_pred             HHHHhHHHHHHHHhhhhhhHhHHH
Q 021850          195 DIVQTLESKLIEIEGKQDITTLGV  218 (306)
Q Consensus       195 ~~V~~Le~Ki~~ie~kQd~tn~GV  218 (306)
                      .....+|.||..++.+-+....++
T Consensus       120 ~e~~~~~~ki~e~~~ki~~ei~~l  143 (177)
T PF07798_consen  120 EEQAKQELKIQELNNKIDTEIANL  143 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444443333

>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

Probab=85.99  E-value=3.3  Score=43.76  Aligned_cols=36  Identities=22%  Similarity=0.261  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 021850          144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL  179 (306)
Q Consensus       144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v  179 (306)
                      ...+.+.+++|++.++.++.+...-+.+++..+.++
T Consensus       376 ~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l  411 (656)
T PRK06975        376 AQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDL  411 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555566555555555444444444444333

>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material

Probab=85.78  E-value=6.3  Score=34.23  Aligned_cols=26  Identities=8%  Similarity=0.259  Sum_probs=21.5

Q ss_pred             hhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850          186 IGDEFQSVRDIVQTLESKLIEIEGKQ  211 (306)
Q Consensus       186 ig~Di~~v~~~V~~Le~Ki~~ie~kQ  211 (306)
                      ...||+.++..|..|+.+|..+..++
T Consensus       107 s~~dv~~L~~rId~L~~~v~~l~~~k  132 (132)
T PF05597_consen  107 SRKDVEALSARIDQLTAQVERLANKK  132 (132)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            36899999999999999998887653

PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.71  E-value=6.5  Score=38.01  Aligned_cols=68  Identities=15%  Similarity=0.275  Sum_probs=53.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850          138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI  205 (306)
Q Consensus       138 eqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~  205 (306)
                      |.-+..+...++.+...|+.+|.++++...=....++++++.+.++.....||+.+..-+......+.
T Consensus        37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~  104 (265)
T COG3883          37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK  104 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677778888899999999999988888888888888888888888888887766665555544

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=85.69  E-value=8.1  Score=41.72  Aligned_cols=33  Identities=15%  Similarity=0.285  Sum_probs=24.1

Q ss_pred             HHHHhhhhhhHHHH-HHHHHHHHHHhhhhhhhhH
Q 021850          130 CNSVARQLEDVYSS-ISAAQRQLSSKITSVDRDV  162 (306)
Q Consensus       130 v~svtKqLeqVs~s-L~~tKkhLsqRId~vD~kL  162 (306)
                      ++++.+|++++-.. ...++.|+...|++++..+
T Consensus       189 l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l  222 (806)
T PF05478_consen  189 LNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL  222 (806)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            45666777777777 7778888888888777654

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx

Probab=85.19  E-value=13  Score=32.83  Aligned_cols=83  Identities=12%  Similarity=0.247  Sum_probs=58.7

Q ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 021850          125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK  203 (306)
Q Consensus       125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq-~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~K  203 (306)
                      .++..+..+-.||..+.+.|...-..+..|++.+-..+++. ..+++.++.|++.+..++..+-..|-.+......|-..
T Consensus        35 ql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~a  114 (140)
T PF04513_consen   35 QLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQA  114 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            35677777888888888888888887777777777766543 45667777888777777777776666666666666555


Q ss_pred             HHHH
Q 021850          204 LIEI  207 (306)
Q Consensus       204 i~~i  207 (306)
                      +.-+
T Consensus       115 ln~l  118 (140)
T PF04513_consen  115 LNNL  118 (140)
T ss_pred             HHHh
Confidence            5533

The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=85.06  E-value=9.7  Score=37.91  Aligned_cols=78  Identities=14%  Similarity=0.270  Sum_probs=49.4

Q ss_pred             chhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021850          117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR  194 (306)
Q Consensus       117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~  194 (306)
                      |=|=-=+.+++++...+..+|+.+++.+..+-..+..|=..+...++...+-=+..++++.+++....+....|....
T Consensus       223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t  300 (359)
T PF10498_consen  223 EQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT  300 (359)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            445566677777888888888888888887777777776666666655555555555555555554444444444333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PHA02562 46 endonuclease subunit; Provisional

Probab=84.21  E-value=13  Score=37.27  Aligned_cols=32  Identities=9%  Similarity=0.154  Sum_probs=14.0

Q ss_pred             HHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850          174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLI  205 (306)
Q Consensus       174 ~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~  205 (306)
                      +++..+......+..++..+...+..++.++.
T Consensus       351 ~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~  382 (562)
T PHA02562        351 QSLITLVDKAKKVKAAIEELQAEFVDNAEELA  382 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence            33433334444444444444444444444443

>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins

Probab=83.99  E-value=14  Score=35.86  Aligned_cols=99  Identities=12%  Similarity=0.160  Sum_probs=71.4

Q ss_pred             hhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh--------------
Q 021850          122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG--------------  187 (306)
Q Consensus       122 TKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig--------------  187 (306)
                      .-+.+-.=..++..|+|.++..|...+.+|...+..+|.--++..+..+++..-+...+..+..+.              
T Consensus        85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d  164 (333)
T PF05816_consen   85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGD  164 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccC
Confidence            334444456899999999999999999999999999998777666666555544333332222222              


Q ss_pred             ----hHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHH
Q 021850          188 ----DEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK  220 (306)
Q Consensus       188 ----~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~  220 (306)
                          ..+..+.+.+..||.|+..++-.+..+..+.--
T Consensus       165 ~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pq  201 (333)
T PF05816_consen  165 QMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQ  201 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence                245667888899999999988888887777543

TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].

>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene

Probab=83.71  E-value=18  Score=30.00  Aligned_cols=19  Identities=21%  Similarity=0.398  Sum_probs=8.4

Q ss_pred             HHHHHHHHhhhhhhHHHHH
Q 021850          126 LSDACNSVARQLEDVYSSI  144 (306)
Q Consensus       126 msnAv~svtKqLeqVs~sL  144 (306)
                      |.+.+..+..+++.+.+.|
T Consensus         3 l~~~~~~l~~~~~~l~~~l   21 (202)
T PF01442_consen    3 LDDRLDSLSSRTEELEERL   21 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444433

This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....

>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system []

Probab=83.70  E-value=22  Score=28.89  Aligned_cols=67  Identities=13%  Similarity=0.130  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh---HHHHHHHHHHhHHHHHHHHhhh
Q 021850          144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD---EFQSVRDIVQTLESKLIEIEGK  210 (306)
Q Consensus       144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~---Di~~v~~~V~~Le~Ki~~ie~k  210 (306)
                      |...=+..+.|...+++.......-.+.......+++.-+.+|..   .|..+-.+|..|+.-..++|.|
T Consensus        26 Le~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k   95 (99)
T PF10046_consen   26 LENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK   95 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555555555555555444444444444333   5555555555555555555543

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=83.47  E-value=38  Score=34.84  Aligned_cols=89  Identities=13%  Similarity=0.163  Sum_probs=67.9

Q ss_pred             hhhhHHHHHHHHhhhhhhHHHHHHHHHHHHH-------HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021850          122 TRRSLSDACNSVARQLEDVYSSISAAQRQLS-------SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR  194 (306)
Q Consensus       122 TKRnmsnAv~svtKqLeqVs~sL~~tKkhLs-------qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~  194 (306)
                      -++-+-++.....++|..|...|++-|++|.       .+.++++..+.|++..-+++..+...-+..++..+-+=..+.
T Consensus       158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~  237 (420)
T COG4942         158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLK  237 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4677778888888899999999999888887       567777778888888888888887777777777777777777


Q ss_pred             HHHHhHHHHHHHHhhh
Q 021850          195 DIVQTLESKLIEIEGK  210 (306)
Q Consensus       195 ~~V~~Le~Ki~~ie~k  210 (306)
                      ..+..+|..+.+..++
T Consensus       238 ~~Ias~e~~aA~~re~  253 (420)
T COG4942         238 NEIASAEAAAAKAREA  253 (420)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777666544443

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=83.28  E-value=20  Score=31.27  Aligned_cols=7  Identities=14%  Similarity=0.411  Sum_probs=2.9

Q ss_pred             HHHHHHH
Q 021850          220 KLCDRAR  226 (306)
Q Consensus       220 ~LC~f~~  226 (306)
                      +|++.++
T Consensus       176 ~l~~~~~  182 (191)
T PF04156_consen  176 QLEEKIQ  182 (191)
T ss_pred             HHHHHHH
Confidence            3444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.88  E-value=20  Score=33.10  Aligned_cols=72  Identities=10%  Similarity=0.193  Sum_probs=51.2

Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 021850          131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES  202 (306)
Q Consensus       131 ~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~  202 (306)
                      ....++..+--+.+...|..|.++|+.+...++....-.+..+..|...+..+..+..+++++..+=..|..
T Consensus        34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p  105 (251)
T PF11932_consen   34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP  105 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455566666777788888888888888887777777777777777777777777777777655554444

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK09039 hypothetical protein; Validated

Probab=80.50  E-value=46  Score=32.68  Aligned_cols=87  Identities=10%  Similarity=0.259  Sum_probs=49.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH-------HHHHHHhh
Q 021850          137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE-------SKLIEIEG  209 (306)
Q Consensus       137 LeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le-------~Ki~~ie~  209 (306)
                      |+..++........+..|+..+.++|++.+..+....-+|..++..++.++.-+..++..+...|       .+|+.++.
T Consensus       100 Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~  179 (343)
T PRK09039        100 LQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR  179 (343)
T ss_pred             HHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444557788888888888888888777666666655555555555555555544444       44455544


Q ss_pred             hhhhHhHH-HHHHHH
Q 021850          210 KQDITTLG-VKKLCD  223 (306)
Q Consensus       210 kQd~tn~G-V~~LC~  223 (306)
                      .=+.+... +.-|-+
T Consensus       180 ~L~~a~~~~~~~l~~  194 (343)
T PRK09039        180 RLNVALAQRVQELNR  194 (343)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            43444323 444433

>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins

Probab=80.46  E-value=16  Score=29.20  Aligned_cols=63  Identities=17%  Similarity=0.254  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHH----HHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850          144 ISAAQRQLSSKITSVDRDVNKIVEISQA----TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE  206 (306)
Q Consensus       144 L~~tKkhLsqRId~vD~kLDeq~eis~~----ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~  206 (306)
                      +-++.+++.+|++.=-..|.++.+.++.    ++.+...=...+.++..|++.++..++.|..|+..
T Consensus        16 ~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~   82 (88)
T PF10241_consen   16 ILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK   82 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666677777766666666665543    34555555566777889999999999999998873

There is a characteristic KxDL motif towards the C terminus. The function is unknown.

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=80.23  E-value=13  Score=26.69  Aligned_cols=53  Identities=15%  Similarity=0.218  Sum_probs=31.2

Q ss_pred             HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850          153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI  205 (306)
Q Consensus       153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~  205 (306)
                      +.|+.+..++.+.+++...|.++|.+=..-+.+|..+++.....+..=-.+|.
T Consensus         4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~   56 (63)
T PF05739_consen    4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLK   56 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666677777777776666555555555555555544444444443

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=80.16  E-value=32  Score=35.70  Aligned_cols=17  Identities=12%  Similarity=0.374  Sum_probs=13.1

Q ss_pred             hHHHHHHHHHHHHHHhc
Q 021850           58 FNDLLAEVSSVQQELSH   74 (306)
Q Consensus        58 ~~~L~aQV~~LaqElr~   74 (306)
                      |.++..+|..|+++|.+
T Consensus       251 ~~~i~~~i~~l~~~i~~  267 (569)
T PRK04778        251 HLDIEKEIQDLKEQIDE  267 (569)
T ss_pred             CCChHHHHHHHHHHHHH
Confidence            44478888888888887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	306
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 39/255 (15%), Positives = 78/255 (30%), Gaps = 60/255 (23%)

Query: 9   TFLVGAGIL-TSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSS 67
            F +   IL T+      R   V+D +         L         D      LL +   
Sbjct: 261 AFNLSCKILLTT------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKYLD 312

Query: 68  VQ-QELSHVPRSVIIETSSGSGTGAKKYGVIVVIVA-VGYGYVWWKGWKLPDMMFATRRS 125
            + Q+L   PR    E  + +         + +I   +  G   W  WK  +        
Sbjct: 313 CRPQDL---PR----EVLTTNPR------RLSIIAESIRDGLATWDNWKHVN-------- 351

Query: 126 LSDACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184
               C+ +   +E   + +  A  R++  +++      +    I       ++++     
Sbjct: 352 ----CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTIL---LSLIWF--- 397

Query: 185 LIGDEFQSVRDIVQTLESK-LIEIEGKQDITT-----LGVKKLCDRAREL-----ENGRP 233
                   V  +V  L    L+E + K+   +     L +K   +    L     ++   
Sbjct: 398 --DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 234 TELVQSGSLHPLPLE 248
            +   S  L P  L+
Sbjct: 456 PKTFDSDDLIPPYLD 470

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	306
2ba2_A	85	D12_ORF131, hypothetical UPF0134 protein MPN010; D	94.1
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	91.66
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	87.84
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	87.19
3g67_A	213	Methyl-accepting chemotaxis protein; four-helix bu	86.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	86.76
3g67_A	213	Methyl-accepting chemotaxis protein; four-helix bu	86.19
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	85.98
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	85.42
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	84.33
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	83.62
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	83.61
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	83.53
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	82.36

>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1

Probab=94.10  E-value=0.097  Score=41.57  Aligned_cols=77  Identities=17%  Similarity=0.235  Sum_probs=51.1

Q ss_pred             hhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh
Q 021850          120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT  199 (306)
Q Consensus       120 yVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~  199 (306)
                      |||++-+..-..+.            +++..|.+|...+...+.-|-|-+..=-+++.+++.....-|.-++.|-....+
T Consensus         8 YVT~Kqf~e~l~~F------------k~~~~~~~~~~kie~~~~~QgEqI~~qGeqIkeLq~eqkaQg~tl~lil~tL~~   75 (85)
T 2ba2_A            8 YVTHKQLDEKLKNF------------VTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQG   75 (85)
T ss_dssp             BCBHHHHHHHHTTB------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89998887642221            355556666666666665555555554566666666556667777888888888


Q ss_pred             HHHHHHHHh
Q 021850          200 LESKLIEIE  208 (306)
Q Consensus       200 Le~Ki~~ie  208 (306)
                      +..+++.||
T Consensus        76 ~nkRLDkle   84 (85)
T 2ba2_A           76 INKRLDNLE   84 (85)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHhhccC
Confidence            888998886

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=91.66  E-value=2  Score=34.80  Aligned_cols=79  Identities=10%  Similarity=0.281  Sum_probs=59.9

Q ss_pred             HHHhhhh---hhHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 021850          131 NSVARQL---EDVYSSISAAQRQLSSKITSVD----RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK  203 (306)
Q Consensus       131 ~svtKqL---eqVs~sL~~tKkhLsqRId~vD----~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~K  203 (306)
                      +.++|||   .+..+.+..+|+.|..+|+.+.    .|++++.+....++.++..=..++..+..+++.....=..|..+
T Consensus        11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~   90 (107)
T 2no2_A           11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAE   90 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566766   4667788999999999999865    56777888888888888887777777777777777766666677


Q ss_pred             HHHHhh
Q 021850          204 LIEIEG  209 (306)
Q Consensus       204 i~~ie~  209 (306)
                      ++.++.
T Consensus        91 ~~~l~~   96 (107)
T 2no2_A           91 FAELEK   96 (107)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765554

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=87.84  E-value=1.4  Score=36.54  Aligned_cols=55  Identities=22%  Similarity=0.323  Sum_probs=43.5

Q ss_pred             hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850           99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  178 (306)
Q Consensus        99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~  178 (306)
                      |+.-+|.||+=.+                               ++..|+..|..||+.++..+++..+..+.++++++.
T Consensus        82 V~v~lG~g~~vE~-------------------------------~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~  130 (151)
T 2zdi_C           82 AIVSVGSGYAVER-------------------------------SIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGE  130 (151)
T ss_dssp             EEEEEETTEEEEE-------------------------------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677899999887                               357888889999999998888888877777777766


Q ss_pred             hhhchh
Q 021850          179 LRGRSK  184 (306)
Q Consensus       179 v~~dls  184 (306)
                      +...+.
T Consensus       131 ~~~~l~  136 (151)
T 2zdi_C          131 VARKAQ  136 (151)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=87.19  E-value=8.7  Score=36.18  Aligned_cols=79  Identities=14%  Similarity=0.137  Sum_probs=57.5

Q ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850          125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL  204 (306)
Q Consensus       125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki  204 (306)
                      -|.+++..+-..=..+-++|..+.+.+.+-|++.-.. .|+......++.++++++.++.++.-.-..-+++|-+|-..|
T Consensus       356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (471)
T 3mq9_A          356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAV-MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASL  434 (471)
T ss_dssp             HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHH-HHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Confidence            3445555554443456778888888888888776444 477888899999999999999998888888777777765433

>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C

Probab=86.93  E-value=5.5  Score=35.39  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=15.8

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 021850          127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD  161 (306)
Q Consensus       127 snAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~k  161 (306)
                      +.|+..++..+..+.+.++.+-.++..-++.+...
T Consensus         6 a~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~   40 (213)
T 3g67_A            6 KERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKI   40 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444433333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.76  E-value=3.3  Score=39.29  Aligned_cols=67  Identities=10%  Similarity=-0.032  Sum_probs=54.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHH
Q 021850          158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDR  224 (306)
Q Consensus       158 vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f  224 (306)
                      +....+++.++.++.+.|-..+..+.+.++.+++.+++--..++..+.++...=.-+++-...+|.-
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (487)
T 3oja_A          412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR  478 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence            4455666777888888888888899999999999999888888888888887777777777777753

>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C

Probab=86.19  E-value=9.8  Score=33.76  Aligned_cols=63  Identities=11%  Similarity=0.125  Sum_probs=30.1

Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021850          132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR  194 (306)
Q Consensus       132 svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~  194 (306)
                      .+...+++++..+...-.++....+.+....++..++++.+.+.+.+....+.++...+..+-
T Consensus         4 qva~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (213)
T 3g67_A            4 EVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEAS   66 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555555555444444444444444444333333

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=85.98  E-value=5.3  Score=39.75  Aligned_cols=96  Identities=10%  Similarity=0.212  Sum_probs=58.7

Q ss_pred             CCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHH---HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchh-----hh
Q 021850          115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-----LI  186 (306)
Q Consensus       115 ~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKk---hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls-----~i  186 (306)
                      +.|.|=-+.++....+..|-..|++++..-..++.   +|+..+...+.++.+..+..+.-.+++.+.+.-++     .+
T Consensus        87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~  166 (464)
T 1m1j_B           87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI  166 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            48888888999999999999999999876666553   35555555555555554444444444433333222     23


Q ss_pred             hhHHHHHHHHHHhHHHHHHHHhhh
Q 021850          187 GDEFQSVRDIVQTLESKLIEIEGK  210 (306)
Q Consensus       187 g~Di~~v~~~V~~Le~Ki~~ie~k  210 (306)
                      ...|..++..++.|..||..+|.+
T Consensus       167 ~~~i~~L~~~~~~l~~ki~~l~~~  190 (464)
T 1m1j_B          167 PSSLRVLRAVIDSLHKKIQKLENA  190 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555566666666655544

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.33  E-value=2.4  Score=34.62  Aligned_cols=51  Identities=12%  Similarity=0.147  Sum_probs=26.0

Q ss_pred             HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850          153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE  206 (306)
Q Consensus       153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~  206 (306)
                      ..|+.+...++.+...-......+.++..   +...++..++..+..||.-+..
T Consensus        43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~   93 (129)
T 3tnu_B           43 RMIQRLRAEIDNVKKQCANLQNAIADAEQ---RGELALKDARNKLAELEEALQK   93 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHH
Confidence            45556666665555555555555544433   2234455555555555555543

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=83.62  E-value=5.2  Score=35.73  Aligned_cols=57  Identities=4%  Similarity=0.114  Sum_probs=25.1

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhh--hchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850          155 ITSVDRDVNKIVEISQATQEEVTILR--GRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ  211 (306)
Q Consensus       155 Id~vD~kLDeq~eis~~ik~eV~~v~--~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQ  211 (306)
                      |.+++..+++..+-.+..++....++  .+...+..+++....-...||.++-++...-
T Consensus        62 ~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~i  120 (256)
T 3na7_A           62 VSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEI  120 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444433332  1233344555555555555555555444433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=83.61  E-value=11  Score=38.49  Aligned_cols=99  Identities=10%  Similarity=0.150  Sum_probs=66.5

Q ss_pred             CCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHH-------HHHHHHHHHHHHHHHhhhchhhhh
Q 021850          115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN-------KIVEISQATQEEVTILRGRSKLIG  187 (306)
Q Consensus       115 ~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLD-------eq~eis~~ik~eV~~v~~dls~ig  187 (306)
                      +-++|-=+-|++.+-++.|-.+|++++..=..+-....+-.+.+..++.       -..|++...+..+..+++.|.+--
T Consensus        51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl  130 (562)
T 3ghg_A           51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV  130 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777889999999999999999977666555555555555544444       344555555555666666665544


Q ss_pred             hHHHHHHHHHHhHHHHHHHHhhhhhh
Q 021850          188 DEFQSVRDIVQTLESKLIEIEGKQDI  213 (306)
Q Consensus       188 ~Di~~v~~~V~~Le~Ki~~ie~kQd~  213 (306)
                      .-|..|+..|+.+-.||.++|---|+
T Consensus       131 snIrvLQsnLedq~~kIQRLEvDIdi  156 (562)
T 3ghg_A          131 QHIQLLQKNVRAQLVDMKRLEVDIDI  156 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677777777777888887764443

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=83.53  E-value=7.8  Score=28.60  Aligned_cols=69  Identities=19%  Similarity=0.245  Sum_probs=41.8

Q ss_pred             hHHHHHHHHhhhhhhHHH-HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021850          125 SLSDACNSVARQLEDVYS-SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV  193 (306)
Q Consensus       125 nmsnAv~svtKqLeqVs~-sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v  193 (306)
                      .|+.+.+.|=.|-|.+-. .-+.+..-...+++.+........+-...+++|+++++..+..+.-+++++
T Consensus         6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl   75 (77)
T 3trt_A            6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL   75 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456677777666665433 234455566677777666666666666666666666666555555555544

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.36  E-value=2.5  Score=34.65  Aligned_cols=70  Identities=7%  Similarity=0.291  Sum_probs=31.3

Q ss_pred             hhhhhHHHHHHHHHHH---HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850          135 RQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI  207 (306)
Q Consensus       135 KqLeqVs~sL~~tKkh---LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i  207 (306)
                      ++...-.+.+..+|.+   +..+|+.|...++.+...-....+.+.++..   +...++..++..+..||.-+..+
T Consensus        24 ~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~   96 (131)
T 3tnu_A           24 REVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQL   96 (131)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334555555543   3456667777766666555555555555544   23445566666666666665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	306
d1lvfa_	106	Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu	86.34

>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.34  E-value=0.68  Score=35.03  Aligned_cols=61  Identities=20%  Similarity=0.263  Sum_probs=43.3

Q ss_pred             hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHhhhch
Q 021850          121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD-RDVNKIVEISQATQEEVTILRGRS  183 (306)
Q Consensus       121 VTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD-~kLDeq~eis~~ik~eV~~v~~dl  183 (306)
                      -+++-|.++|.++-.+|+.+..++..+.++ -.|- +++ ..++.-......++++|..++..+
T Consensus        42 ~~~~eL~~~l~siewdL~dLe~av~~ve~n-p~kf-~l~~~ei~~Rr~fi~~~~~~I~~~~~~l  103 (106)
T d1lvfa_          42 WTTNELRNNLRSIEWDLEDLDETISIVEAN-PRKF-NLDATELSIRKAFITSTRQIVRDMKDQM  103 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-GGGG-TCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhC-HHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368899999999999999999999988765 3333 233 335555666666677776666554