Citrus Sinensis ID: 021853

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
MGTQTMGSEGDAAAQAKNMLSLTRQGSLYNLTLDEIQSQLGDRGKPLGSMNLDELLKSVWTAENNFHSEPALSLHRQGSLTLAQDLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAVNESTTPGQNNSGPGLEVDSIATVQQNVSQHAQWMQYQLPSVQLQPQHQHQHQNNLMAVYMPTHTIQQSLPITANPVLDAQYPDNQMTMSPSSLMGALSDTQTPGRKRVASGDVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIFFFFS
cccccccccccccccccccccccccccccHHcHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHcccccccccccccccccccccccHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
cccEEccccccccccccccccccccccEEEEcHHHHHHHHcccccccccccHHHHHHHcccHHHHHcccccccccccccccccccHcHHcHHHHHHHHHHcccccccccccccccccccHccHHHHHHHcccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mgtqtmgsegDAAAQAKNMLSltrqgslynLTLDEIQSqlgdrgkplgsmnLDELLKSVWTAennfhsepalslhrqgsltlaqdlsnkTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKagavnesttpgqnnsgpglevdsIATVQQNVSQHAQWMQyqlpsvqlqpqhqhqHQNNLMAvympthtiqqslpitanpvldaqypdnqmtmspsslmgalsdtqtpgrkrvasgdVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIFFFFS
mgtqtmgsegdAAAQAKNMLSLTRQGSLYNLTLDEIQSQLGDRGKPLGSMNLDELLKSVWTAENNFHSEPALSLHRQGSLTLAQDLSNKTVDEVWKDIrqkksddnqenEAQArqtslgemTLEDFLIKAGAVNESTTPGQNNSGPGLEVDSIATVQQNVSQHAQWMQYQLPSVQLQPQHQHQHQNNLMAVYMPTHTIQQSLPITANPVLDAQYPDNQMTMSPSSLMGALSdtqtpgrkrvasgdvvektverrqkrmiknresaarsrarkqaytqelenkvsrleeenerlrrqrVWFIFFFFS
MGTQTMGSEGDAAAQAKNMLSLTRQGSLYNLTLDEIQSQLGDRGKPLGSMNLDELLKSVWTAENNFHSEPALSLHRQGSLTLAQDLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAVNESTTPGQNNSGPGLEVDSIATVQQNVSQHAQWMQYqlpsvqlqpqhqhqhqnnlMAVYMPTHTIQQSLPITANPVLDAQYPDNQMTMSPSSLMGALSDTQTPGRKRVASGDVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSrleeenerlrrQRVWFIFFFFS
***************************LYNLTL******************LDELLKSVWTAENN************************************************************FLI***********************************AQWMQYQL****************LMAVYMPTHTIQQSLPITA****************************************************************************************RQRVWFIFFFF*
*****************************NLTLDEIQSQLGDRGKPLGSMNLDELLKSVWTA*****************************DEV**********************************************************************************QP************************************************************************************************YTQELENKVSRLEEENERLRRQRVWFIFFFFS
*************AQAKNMLSLTRQGSLYNLTLDEIQSQLGDRGKPLGSMNLDELLKSVWTAENNFHSEPALSLHRQGSLTLAQDLSNKTVDEVWKDIRQK**************TSLGEMTLEDFLIKAGAVNESTTPGQNNSGPGLEVDSIATVQQNVSQHAQWMQYQLPS**********HQNNLMAVYMPTHTIQQSLPITANPVLDAQYPDNQMTMSPSSLMGA********************TVERRQKRMI****************TQELENKVSRLEEENERLRRQRVWFIFFFFS
***********************RQGSLYNLTLDEIQSQLGDRGKPLGSMNLDELLKSVWTAENN*H*************TLAQDLSNKTVDEVWKDIRQKK**************SLGEMTLEDFLIKAGAVNESTTPGQ**SGPGLEVDSIATVQQNVSQHAQWMQYQLPSVQLQPQHQHQHQNNLMAVYMPTHTIQQSLPITANPVLD*************************************K**************SAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIFFFFS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGTQTMGSEGDAAAQAKNMLSLTRQGSLYNLTLDEIQSQLGDRGKPLGSMNLDELLKSVWTAENNFHSEPALSLHRQGSLTLAQDLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAVNESTTPGQNNSGPGLEVDSIATVQQNVSQHAQWMQYQLPSVQLQPQHQHQHQNNLMAVYMPTHTIQQSLPITANPVLDAQYPDNQMTMSPSSLMGALSDTQTPGRKRVASGDVVEKTVERRQKRMIKNRESAARSxxxxxxxxxxxxxxxxxxxxxxxxxxxxRVWFIFFFFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query306 2.2.26 [Sep-21-2011]
Q9LES3297 ABSCISIC ACID-INSENSITIVE yes no 0.843 0.868 0.573 9e-74
Q9C5Q2262 ABSCISIC ACID-INSENSITIVE no no 0.715 0.835 0.510 3e-60
Q9M7Q5392 ABSCISIC ACID-INSENSITIVE no no 0.901 0.704 0.397 5e-40
Q6ZDF3318 bZIP transcription factor no no 0.774 0.745 0.357 2e-28
Q9FMM7370 ABSCISIC ACID-INSENSITIVE no no 0.846 0.7 0.319 6e-25
Q9M7Q2431 ABSCISIC ACID-INSENSITIVE no no 0.382 0.271 0.454 4e-24
Q8RYD6331 ABSCISIC ACID-INSENSITIVE no no 0.781 0.722 0.358 7e-23
Q9M7Q4416 ABSCISIC ACID-INSENSITIVE no no 0.362 0.266 0.455 2e-21
Q9SJN0442 Protein ABSCISIC ACID-INS no no 0.375 0.260 0.369 3e-18
Q9M7Q3454 ABSCISIC ACID-INSENSITIVE no no 0.385 0.259 0.378 6e-18
>sp|Q9LES3|AI5L2_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 2 OS=Arabidopsis thaliana GN=DPBF3 PE=1 SV=1 Back     alignment and function desciption
 Score =  277 bits (708), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 175/305 (57%), Positives = 202/305 (66%), Gaps = 47/305 (15%)

Query: 6   MGSEGDAAAQAKNMLSLTRQGSLYNLTLDEIQSQLGDRGKPLGSMNLDELLKSVWTAENN 65
           M S+     QAK+  SL RQ SLY+LTLDE+Q+ LG  GK LGSMNLDELLKSV + E N
Sbjct: 1   MDSQRGIVEQAKSQ-SLNRQSSLYSLTLDEVQNHLGSSGKALGSMNLDELLKSVCSVEAN 59

Query: 66  FHSEPALS--------LHRQGSLTLAQDLSNKTVDEVWKDIRQKKSDDNQENEAQARQTS 117
             S  A++        L RQGSLTL +DLS KTVDEVWKDI+Q K +    +E + +Q +
Sbjct: 60  QPSSMAVNGGAAAQEGLSRQGSLTLPRDLSKKTVDEVWKDIQQNK-NGGSAHERRDKQPT 118

Query: 118 LGEMTLEDFLIKAGAVNESTTPGQNNSGP--GLEVDSIATVQQNVSQHAQWMQY-QLPSV 174
           LGEMTLED L+KAG V E T PG N+ GP  G    S A + QN++Q   W+QY QLPS+
Sbjct: 119 LGEMTLEDLLLKAGVVTE-TIPGSNHDGPVGGGSAGSGAGLGQNITQVGPWIQYHQLPSM 177

Query: 175 QLQPQHQHQHQNNLMAVYMPTHTIQQSLPITANPVLDAQYP--DNQMTMSPSSLMGALSD 232
             QPQ            +MP                   YP  D Q  +S SSLMG LSD
Sbjct: 178 P-QPQ-----------AFMP-------------------YPVSDMQAMVSQSSLMGGLSD 206

Query: 233 TQTPGRKRVASGDVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENER 292
           TQTPGRKRVASG+VVEKTVERRQKRMIKNRESAARSRARKQAYT ELE KVSRLEEENER
Sbjct: 207 TQTPGRKRVASGEVVEKTVERRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENER 266

Query: 293 LRRQR 297
           LR+Q+
Sbjct: 267 LRKQK 271
Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C5Q2|AI5L3_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 3 OS=Arabidopsis thaliana GN=DPBF4 PE=1 SV=1 Back     alignment and function description
>sp|Q9M7Q5|AI5L4_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 4 OS=Arabidopsis thaliana GN=ABF1 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZDF3|TRAB1_ORYSJ bZIP transcription factor TRAB1 OS=Oryza sativa subsp. japonica GN=TRAB1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FMM7|AI5L8_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 8 OS=Arabidopsis thaliana GN=BZIP15 PE=2 SV=1 Back     alignment and function description
>sp|Q9M7Q2|AI5L7_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 7 OS=Arabidopsis thaliana GN=ABF4 PE=1 SV=1 Back     alignment and function description
>sp|Q8RYD6|AI5L1_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 1 OS=Arabidopsis thaliana GN=DPBF2 PE=1 SV=1 Back     alignment and function description
>sp|Q9M7Q4|AI5L5_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana GN=ABF2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SJN0|ABI5_ARATH Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1 Back     alignment and function description
>sp|Q9M7Q3|AI5L6_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana GN=ABF3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
302398623322 BZIP domain class transcription factor [ 0.928 0.881 0.563 1e-81
255542297310 DNA binding protein, putative [Ricinus c 0.937 0.925 0.536 4e-79
356526358323 PREDICTED: transcription factor bZIP70 [ 0.928 0.879 0.567 7e-79
356571845320 PREDICTED: ABSCISIC ACID-INSENSITIVE 5-l 0.901 0.862 0.594 7e-79
118483091322 unknown [Populus trichocarpa] 0.924 0.878 0.548 2e-78
375298530256 putative basic leucine-zipper transcript 0.732 0.875 0.663 6e-78
356503044316 PREDICTED: ABSCISIC ACID-INSENSITIVE 5-l 0.895 0.867 0.591 3e-77
449446331321 PREDICTED: ABSCISIC ACID-INSENSITIVE 5-l 0.921 0.878 0.561 8e-77
224100543317 predicted protein [Populus trichocarpa] 0.908 0.876 0.547 1e-76
59896064322 bZIP transcription factor [Malus x domes 0.921 0.875 0.543 3e-76
>gi|302398623|gb|ADL36606.1| BZIP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 210/309 (67%), Gaps = 25/309 (8%)

Query: 1   MGTQTMGSEGDAAAQAKN--MLSLTRQGSLYNLTLDEIQSQLGDRGKPLGSMNLDELLKS 58
           MG QTMGS+G A    K      L RQ S+Y+LTLDE+Q+QLGD GKPL SMNLDELLK+
Sbjct: 1   MGIQTMGSQGGADGNCKQPQFQPLGRQNSMYSLTLDEVQNQLGDLGKPLSSMNLDELLKN 60

Query: 59  VWTAENNFHSEPALS---------LHRQGSLTLAQDLSNKTVDEVWKDIRQKKSDDNQEN 109
           VW+ E N      +          L RQ SL+L   LS KTVDEVW+DI+Q K  D +E 
Sbjct: 61  VWSVEANQTMGIDIEGTTLVNQAQLQRQASLSLTSALSKKTVDEVWRDIQQSK--DEEEK 118

Query: 110 EAQARQTSLGEMTLEDFLIKAGAVNES-TTPGQNNSGPGLEVDSIATVQQNVSQHAQWMQ 168
           ++Q RQ +LGEMTLEDFL+KAG V E+  +  +  +GP + VD+    Q       QWMQ
Sbjct: 119 KSQERQRTLGEMTLEDFLVKAGVVAEAEASSDKQCAGPLVGVDANVAAQ---FPQGQWMQ 175

Query: 169 YQLPSVQLQPQHQHQHQNNLMAVYMPTHTIQQSLPITANPVLDAQYPDNQMTMSPSSLMG 228
           Y       QPQ+QH  Q+ +M VYMP+  I   + + A  +++  YPDNQ+ + PS LMG
Sbjct: 176 YS------QPQYQHPQQS-MMGVYMPSQPIPPPMHVGAGAMMEVPYPDNQVPL-PSPLMG 227

Query: 229 ALSDTQTPGRKRVASGDVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEE 288
           ALSDT TPGRKR    D+VEKTVERRQKRMIKNRESAARSRARKQAYT ELENKVSRLEE
Sbjct: 228 ALSDTPTPGRKRGNPEDIVEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEE 287

Query: 289 ENERLRRQR 297
           ENERLR+Q+
Sbjct: 288 ENERLRKQK 296

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255542297|ref|XP_002512212.1| DNA binding protein, putative [Ricinus communis] gi|223548756|gb|EEF50246.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356526358|ref|XP_003531785.1| PREDICTED: transcription factor bZIP70 [Glycine max] Back     alignment and taxonomy information
>gi|356571845|ref|XP_003554082.1| PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|118483091|gb|ABK93455.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|375298530|dbj|BAL61092.1| putative basic leucine-zipper transcription factor fragment, partial [Diospyros kaki] Back     alignment and taxonomy information
>gi|356503044|ref|XP_003520322.1| PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449446331|ref|XP_004140925.1| PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2-like [Cucumis sativus] gi|449529052|ref|XP_004171515.1| PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224100543|ref|XP_002311917.1| predicted protein [Populus trichocarpa] gi|222851737|gb|EEE89284.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|59896064|gb|AAX11392.1| bZIP transcription factor [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
TAIR|locus:2103665297 AREB3 "ABA-responsive element 0.526 0.542 0.534 2e-65
TAIR|locus:2063275262 EEL "AT2G41070" [Arabidopsis t 0.437 0.511 0.5 1.1e-50
TAIR|locus:2118969454 ABF3 "AT4G34000" [Arabidopsis 0.284 0.191 0.478 1.7e-34
TAIR|locus:2076018331 DPBF2 "AT3G44460" [Arabidopsis 0.392 0.362 0.447 8.8e-32
UNIPROTKB|Q6ZDF3318 TRAB1 "bZIP transcription fact 0.287 0.276 0.466 4.8e-29
TAIR|locus:2159986370 AT5G42910 "AT5G42910" [Arabido 0.362 0.3 0.44 6.5e-29
UNIPROTKB|Q8RZ35388 P0489B03.11 "Putative ABA resp 0.225 0.177 0.520 1.6e-28
TAIR|locus:2049425442 ABI5 "ABA INSENSITIVE 5" [Arab 0.153 0.106 0.770 2.2e-21
TAIR|locus:2024224270 GBF4 "G-box binding factor 4" 0.173 0.196 0.528 1.8e-09
TAIR|locus:2172507315 AT5G44080 [Arabidopsis thalian 0.143 0.139 0.568 1.3e-08
TAIR|locus:2103665 AREB3 "ABA-responsive element binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 392 (143.0 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
 Identities = 93/174 (53%), Positives = 115/174 (66%)

Query:     6 MGSEGDAAAQAKNMLSLTRQGSLYNLTLDEIQSQLGDRGKPLGSMNLDELLKSVWTAENN 65
             M S+     QAK+  SL RQ SLY+LTLDE+Q+ LG  GK LGSMNLDELLKSV + E N
Sbjct:     1 MDSQRGIVEQAKSQ-SLNRQSSLYSLTLDEVQNHLGSSGKALGSMNLDELLKSVCSVEAN 59

Query:    66 FHSEPALS--------LHRQGSLTLAQDLSNKTVDEVWKDIRQKKSDDNQENEAQARQTS 117
               S  A++        L RQGSLTL +DLS KTVDEVWKDI+Q K+  +  +E + +Q +
Sbjct:    60 QPSSMAVNGGAAAQEGLSRQGSLTLPRDLSKKTVDEVWKDIQQNKNGGSA-HERRDKQPT 118

Query:   118 LGEMTLEDFLIKAGAVNESTTPGQNNSGP--GLEVDSIATVQQNVSQHAQWMQY 169
             LGEMTLED L+KAG V E T PG N+ GP  G    S A + QN++Q   W+QY
Sbjct:   119 LGEMTLEDLLLKAGVVTE-TIPGSNHDGPVGGGSAGSGAGLGQNITQVGPWIQY 171
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0046983 "protein dimerization activity" evidence=IEA
GO:0003677 "DNA binding" evidence=ISS;IPI
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2063275 EEL "AT2G41070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118969 ABF3 "AT4G34000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076018 DPBF2 "AT3G44460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZDF3 TRAB1 "bZIP transcription factor TRAB1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2159986 AT5G42910 "AT5G42910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8RZ35 P0489B03.11 "Putative ABA response element binding factor" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2049425 ABI5 "ABA INSENSITIVE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024224 GBF4 "G-box binding factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172507 AT5G44080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LES3AI5L2_ARATHNo assigned EC number0.57370.84310.8686yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_VIII000037
SubName- Full=Putative uncharacterized protein; (317 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
smart0033865 smart00338, BRLZ, basic region leucin zipper 2e-15
pfam0017064 pfam00170, bZIP_1, bZIP transcription factor 3e-12
pfam0771654 pfam07716, bZIP_2, Basic region leucine zipper 2e-10
cd1219354 cd12193, B_zip1, basic leucine zipper DNA-binding 5e-07
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper Back     alignment and domain information 
 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 25/48 (52%), Positives = 37/48 (77%)

Query: 249 KTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQ 296
           +  E+R++R  +NRE+A RSR RK+A  +ELE KV +LE ENERL+++
Sbjct: 1   EEDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKE 48

Length = 65
>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor Back     alignment and domain information
>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper Back     alignment and domain information
>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 306
KOG4005 292 consensus Transcription factor XBP-1 [Transcriptio 99.27
smart0033865 BRLZ basic region leucin zipper. 99.21
KOG4343 655 consensus bZIP transcription factor ATF6 [Transcri 99.21
KOG3584348 consensus cAMP response element binding protein an 99.21
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 99.12
PF0771654 bZIP_2: Basic region leucine zipper; InterPro: IPR 99.07
KOG0709 472 consensus CREB/ATF family transcription factor [Tr 98.89
PF0313192 bZIP_Maf: bZIP Maf transcription factor; InterPro: 97.87
KOG0837279 consensus Transcriptional activator of the JUN fam 97.55
KOG3119269 consensus Basic region leucine zipper transcriptio 97.15
KOG4571294 consensus Activating transcription factor 4 [Trans 96.83
KOG3863604 consensus bZIP transcription factor NRF1 [Transcri 95.91
KOG4196135 consensus bZIP transcription factor MafK [Transcri 95.77
KOG1414395 consensus Transcriptional activator FOSB/c-Fos and 93.81
KOG1414 395 consensus Transcriptional activator FOSB/c-Fos and 90.32
KOG3119269 consensus Basic region leucine zipper transcriptio 87.51
>KOG4005 consensus Transcription factor XBP-1 [Transcription] Back     alignment and domain information 
Probab=99.27  E-value=1.2e-11  Score=114.77  Aligned_cols=66  Identities=35%  Similarity=0.427  Sum_probs=62.5

Q ss_pred             CCCCcccCCCcccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853          235 TPGRKRVASGDVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIF  302 (306)
Q Consensus       235 ~~~RKR~~~~~~~e~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~  302 (306)
                      .+.|||++.+|+  ..+||-+||++|||++|+.+|.|||+++.++|.++.+|++||+.|+.+++.||.
T Consensus        53 ~~~rKr~RL~HL--S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~  118 (292)
T KOG4005|consen   53 QPKRKRRRLDHL--SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRA  118 (292)
T ss_pred             chHHHHHhhccc--CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999988  789999999999999999999999999999999999999999999999999875

>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription] Back     alignment and domain information
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription] Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization Back     alignment and domain information
>KOG0709 consensus CREB/ATF family transcription factor [Transcription] Back     alignment and domain information
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell Back     alignment and domain information
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription] Back     alignment and domain information
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription] Back     alignment and domain information
>KOG4571 consensus Activating transcription factor 4 [Transcription] Back     alignment and domain information
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription] Back     alignment and domain information
>KOG4196 consensus bZIP transcription factor MafK [Transcription] Back     alignment and domain information
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription] Back     alignment and domain information
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription] Back     alignment and domain information
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 1e-15
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 1e-12
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 2e-10
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 2e-10
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 4e-10
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 8e-08
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 2e-07
3a5t_A107 Transcription factor MAFG; protein-DNA complex, BZ 4e-07
2wt7_B90 Transcription factor MAFB; transcription, transcri 5e-07
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 2e-06
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 7e-05
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55 Back     alignment and structure
 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 19/44 (43%), Positives = 32/44 (72%)

Query: 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQ 296
           +R+ R++KNRE+A  SR +K+ Y + LEN+V+ LE +N+ L  +
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEE 44
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61 Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63 Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62 Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63 Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63 Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87 Back     alignment and structure
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107 Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90 Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78 Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 99.53
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 99.27
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 99.21
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 99.19
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 99.11
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 98.72
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 98.48
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 98.47
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 98.43
3a5t_A107 Transcription factor MAFG; protein-DNA complex, BZ 98.22
2wt7_B90 Transcription factor MAFB; transcription, transcri 97.74
1skn_P92 DNA-binding domain of SKN-1; complex (transcriptio 95.79
2oqq_A42 Transcription factor HY5; homodimer leucine zipper 94.53
2c9l_Y63 EB1, zebra, BZLF1 trans-activator protein; viral p 93.24
3s9g_A104 Protein hexim1; cyclin T-binding domain (TBD), cyc 93.24
2oxj_A34 Hybrid alpha/beta peptide based on the GCN4-P1 Se 92.04
3m48_A33 General control protein GCN4; leucine zipper, synt 91.03
1kd8_B36 GABH BLL, GCN4 acid base heterodimer base-D12LA16L 88.64
3c3f_A34 Alpha/beta peptide with the GCN4-PLI SIDE chain S 88.01
2kz5_A91 Transcription factor NF-E2 45 kDa subunit; structu 86.91
3c3g_A33 Alpha/beta peptide with the GCN4-PLI SIDE chain S 86.68
1kd8_A36 GABH AIV, GCN4 acid base heterodimer acid-D12IA16V 86.03
2bni_A34 General control protein GCN4; four helix bundle, a 84.75
1uo4_A34 General control protein GCN4; four helix bundle, c 84.35
3he5_A49 Synzip1; heterodimeric coiled-coil, de novo protei 83.69
2wq1_A33 General control protein GCN4; TAA, nucleus, coiled 82.92
2hy6_A34 General control protein GCN4; protein design, para 81.59
1dip_A78 Delta-sleep-inducing peptide immunoreactive peptid 81.32
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 80.99
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 80.97
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 80.27
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 80.01
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Back     alignment and structure
Probab=99.53  E-value=1.6e-14  Score=105.41  Aligned_cols=51  Identities=37%  Similarity=0.552  Sum_probs=47.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853          253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIFF  303 (306)
Q Consensus       253 krqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~  303 (306)
                      |+++||++||+||++||.|||+|+++||.+|..|+.||..|+.+++.+...
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~   51 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL   51 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999999998887643
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Back     alignment and structure
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1 Back     alignment and structure
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y Back     alignment and structure
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A Back     alignment and structure
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A* Back     alignment and structure
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A Back     alignment and structure
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B Back     alignment and structure
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1 Back     alignment and structure
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A* Back     alignment and structure
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A Back     alignment and structure
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ... Back     alignment and structure
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A* Back     alignment and structure
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene} Back     alignment and structure
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ... Back     alignment and structure
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A Back     alignment and structure
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1 Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
d1sknp_74 Skn-1 {Caenorhabditis elegans [TaxId: 6239]} 90.91
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 83.72
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.91  E-value=0.051  Score=39.84  Aligned_cols=29  Identities=24%  Similarity=0.340  Sum_probs=24.2

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021853          249 KTVERRQKRMIKNRESAARSRARKQAYTQ  277 (306)
Q Consensus       249 ~~~ekrqrR~iKNReSA~rSR~RKk~y~~  277 (306)
                      ..-.+-.||.=|||.+|+.+|+||-...+
T Consensus        44 l~lirDIRRRGKNKvAAqnCRKRKld~~d   72 (74)
T d1sknp_          44 RQLIRKIRRRGKNKVAARTCRQRRTDRHD   72 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhhhhhc
Confidence            34568889999999999999999977544
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure