Citrus Sinensis ID: 021862

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKEC
Secondary Structure (PSIPRED)
cccccccccccEEccHHHHHHHHccccEEEHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHccccEEEEccccHHHHHHHHHHcccccccccccEEEEEccccccccccccccccEEEEEccccHHHcccccHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHccccEEEEccccccccccccccccEEEEccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccEEEEEcccEEEEcccccccHHHHHHHHHccccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccEEEccccHHHHHHccccEEEHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHccHHHccccEEEEEEccHHHHHccccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHcccEEEEEcccccccccEEEEccEEEEEccccEEEEcHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccEEEEEEEEcccEEEEEccccccHHHHHHHHHHcccccEEEEEccccccc
Coil and Loop (DISEMBL)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAfvggnlgnplseaafhcialpsskpkfQVAVVEVSSyqmeipnkyfcpTVSVVlnltpdhlerhktmknyaltkCHLFShmvntklgllpfgnqHLNEAIKghrfnlawigafpgvkidteaktasfevpavgvvsQLQLHNmkvmgrhnyHNAAVAALSVLGLDIGVDVEALNSTIeilrtpphrmqivhrdiqgvtwvddskatnlEATCTglmdlkghkcvillggqakec
Flexible Loop (DISEMBL)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIeilrtpphrmqIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKEC
Low Complexity Region (SEG)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKEC
Disordered region (IsUnstruct)
*WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG******
Disordered Region (DISOPRED)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK**
Disordered Region (DISEMBL)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKEC
Disordered Region (DISPRO)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKEC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	306	2.2.26 [Sep-21-2011]
Q6AJ52	456	UDP-N-acetylmuramoylalani	yes	no	0.879	0.589	0.340	2e-29
B8FBS0	450	UDP-N-acetylmuramoylalani	yes	no	0.869	0.591	0.332	3e-29
Q2IG29	462	UDP-N-acetylmuramoylalani	yes	no	0.885	0.586	0.326	5e-29
A8ZXW5	459	UDP-N-acetylmuramoylalani	yes	no	0.862	0.575	0.336	4e-28
Q7V0A5	473	UDP-N-acetylmuramoylalani	yes	no	0.866	0.560	0.302	3e-26
Q1IKG8	453	UDP-N-acetylmuramoylalani	yes	no	0.869	0.587	0.301	6e-26
Q5X1S4	447	UDP-N-acetylmuramoylalani	yes	no	0.816	0.559	0.290	2e-25
Q2RK81	455	UDP-N-acetylmuramoylalani	yes	no	0.898	0.604	0.335	3e-25
Q5ZSA3	447	UDP-N-acetylmuramoylalani	yes	no	0.816	0.559	0.287	8e-25
A0Q5C2	417	UDP-N-acetylmuramoylalani	yes	no	0.777	0.570	0.313	1e-24

>sp|Q6AJ52|MURD_DESPS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=murD PE=3 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 142/288 (49%), Gaps = 19/288 (6%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA L ++G +V+ EL  AA V+ R   ++A+TGTNGK+TV + VG +L   G   FVGGN
Sbjct: 91  LARLRRAGVQVLGELALAAPVLDR--PVVAITGTNGKTTVTSLVGDLLRASGKRVFVGGN 148

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           +G PL       + L SS  +  V V+EVSS+Q+E+    F P ++++LNL+PDHL+RH 
Sbjct: 149 IGVPL-------LDLLSSGDEVDVIVLEVSSFQLELAGD-FSPHIALLLNLSPDHLDRHG 200

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
            +  Y   K HLF     T + ++  G+  L     G      ++  F     D      
Sbjct: 201 DLAGYRAAKMHLFQKQGMTDIAIVS-GDDPLCLLSDGCGEASRYLFGFSAAS-DISVAAG 258

Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILRTPP 256
            FE    G      L +  +  R  + NAA AA     L     D+E     I       
Sbjct: 259 HFEFDFAGQREIYSLRDSALDNRTGWLNAAPAAFIARSLACAKADIE---RGIAAFTLDA 315

Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
           HRM+ V   I GV + +DSKATN  A  + L  L   + +++ GG+ K
Sbjct: 316 HRMEPVA-SIAGVQYYNDSKATNTGAVISALQQLV--RVILIAGGRDK 360

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).
Desulfotalea psychrophila (strain LSv54 / DSM 12343) (taxid: 177439)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 9

>sp|B8FBS0|MURD_DESAA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=murD PE=3 SV=1

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 29/295 (9%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           L    + G  V+ E++ A++ I     I+AVTGTNGK+TV + +G+M+   GI AFVGGN
Sbjct: 85  LEAAREKGVPVIGEVELASRFI--QAPIIAVTGTNGKTTVTSLIGEMMEASGISAFVGGN 142

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           +GNPL       +     + K QV V E+SS+Q++   + F P V+++ N+T DH++R+ 
Sbjct: 143 IGNPL-------VNYAKGEDKAQVVVAEISSFQLDTI-ESFAPKVALLTNVTEDHMDRYD 194

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
            M+ YA +K  +F +       +L  G    + A+ G      W   F G + + EA  A
Sbjct: 195 GMEGYAASKARVFMNQTGADFAILN-GCDKWSRAMCGGIKASQWF--FTG-REEAEAGIA 250

Query: 198 SFEVPAVGVVSQLQLH------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
                A+   +  Q H       M + G HN  NAA AAL+         VE +   I+ 
Sbjct: 251 -MNAGAMDFFTGAQKHWSLSLKKMTLSGEHNKENAAAAALAAYAAG--ASVEGIQGAIDA 307

Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI--LLGGQAK 304
            +  PHR++ V R++  V + DDSKATN++A    L  L+G    +  ++GG+ K
Sbjct: 308 FKGLPHRLEFV-REVMDVKYYDDSKATNVDAV---LRALEGFNAPVHLIMGGRDK 358

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Desulfatibacillum alkenivorans (strain AK-01) (taxid: 439235)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q2IG29|MURD_ANADE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=murD PE=3 SV=1

 Score =  128 bits (322), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 149/300 (49%), Gaps = 29/300 (9%)

Query: 22  LQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQML-NHLGIEAFVGG 76
           +Q+ +R    V  E++ AA+ +   + I+ +TGTNGKST     G +L  H     FVGG
Sbjct: 87  IQAARRRGVPVWGEVELAARFL-GGLPIVGITGTNGKSTTTALTGALLARHR--RTFVGG 143

Query: 77  NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
           NLG PLSE         S +P    AVVE+SS+Q+E   + F   V+ VLN+TPDHL+R+
Sbjct: 144 NLGTPLSELVL------SGEPA-AAAVVELSSFQLEGIER-FRARVAAVLNVTPDHLDRY 195

Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKID-- 191
             +  YA  K  LF+      + +    +     +  A +G      +    P    D  
Sbjct: 196 PDVDAYAAAKARLFATQEPDDVAVANARDPRALAMAGASRGDLHTFGFGAPVPASARDEG 255

Query: 192 ---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
                  TA +  P      + QLHN  + GRHN  NA  A L      +GV  EA+ + 
Sbjct: 256 GEPGPGGTAIWYTPRGRAPERYQLHNRALRGRHNRENAMAAVLCA--RLMGVPGEAVQAG 313

Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKEC 306
           ++      HR+++V  + +GV WV+DSKATN+++T  GL        + V+++GG+ K+ 
Sbjct: 314 LDAFPGLHHRLELVA-EGRGVEWVNDSKATNVDSTFVGLAAFPAGAPRVVLIMGGRGKKA 372

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Anaeromyxobacter dehalogenans (strain 2CP-C) (taxid: 290397)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|A8ZXW5|MURD_DESOH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=murD PE=3 SV=1

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/291 (33%), Positives = 148/291 (50%), Gaps = 27/291 (9%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  VM E++ AA+ + + +   AVTGTNGK+TV T +G ML   G + FVGGN+G PL
Sbjct: 93  EKGIPVMGEMELAARFVTKPVA--AVTGTNGKTTVTTLLGDMLKASGRQVFVGGNIGAPL 150

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  I          +AVVEVSS+Q++  ++ F P V+V+LN+  DHL R+     Y
Sbjct: 151 -------IGFADKGENADMAVVEVSSFQLDT-SETFRPHVAVLLNIAEDHLARYVDFNAY 202

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-----FNLAWIGAFPGVKIDT--EAK 195
             +K  +F +     + ++   + H+ +A KG R     FN         V  DT  E  
Sbjct: 203 VRSKGRIFENQEADDVAVINGADFHVLQASKGIRSRKLTFNAGKNTQDGAVIGDTAVEIV 262

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
           TA  +   + V S L      +  RHN  N  +AA ++  L +G  VE + + ++  +  
Sbjct: 263 TAGTKTATISVTSPL------MRARHNMEN--IAAATLAALAMGATVEGIQAAVDGFQGL 314

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKEC 306
            HR++ V   I  V + DDSKATN +A    L +    + V+LLGG+ K C
Sbjct: 315 RHRLEYVA-SIDDVHYFDDSKATNPDAVRRAL-EFFTSRVVLLLGGEDKGC 363

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Desulfococcus oleovorans (strain DSM 6200 / Hxd3) (taxid: 96561)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q7V0A5|MURD_PROMP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=murD PE=3 SV=1

 Score =  119 bits (298), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 144/291 (49%), Gaps = 26/291 (8%)

Query: 21  LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
           L + G  V+ E++ A + + ++I  + +TGTNGK+TV   +  +L    + A   GN+G 
Sbjct: 99  LKERGIVVIGEINIAWESL-KNINWIGITGTNGKTTVTHLLSHILRENNLFAPFAGNIGT 157

Query: 81  PLSEAAFHCIALPSSKPK-FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
           PL E A+      S+K K     V E+SS+Q+EI      P + +    TPDHL+RHKT+
Sbjct: 158 PLCEIAY------STKSKNIDWIVAELSSFQIEIATHCIKPKIGIWTTFTPDHLDRHKTL 211

Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
            NY   K  L      ++  +  + +Q+L E  K    N  WI   P V   +++    +
Sbjct: 212 DNYFKIKNSLLKQ---SEFRIYNYDDQYLKENFKS-LLNGIWITTNPNV---SDSDHCDY 264

Query: 200 EVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
            +     + +     L L N K+ G HN  N  +A  +     IG+  E + + +     
Sbjct: 265 WINNENFIVERREKLLSLKNFKLKGNHNTQNLLLAVAA--ARKIGLSTERIKNALLSYEQ 322

Query: 255 PPHRMQ-IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
            PHRM+ I  RD   +  ++DSKATN +++  G+  +KG   +I+ GG+ K
Sbjct: 323 LPHRMETIFQRDELEI--INDSKATNFDSSVAGINAIKGSP-IIISGGRLK 370

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q1IKG8|MURD_KORVE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Koribacter versatilis (strain Ellin345) GN=murD PE=3 SV=1

 Score =  118 bits (295), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 140/285 (49%), Gaps = 19/285 (6%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  V+ E++ AAQ +P  +  +A+TG+NGK+T  +  G +L   G +  VGGN+G P 
Sbjct: 90  KQGIPVIGEIELAAQFVPGHV--IAITGSNGKTTTTSLCGDILQSGGKKTLVGGNIGTP- 146

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  I+          +V+E+SS+Q+E   + F P ++ +LN+TPDHL+RH T + Y
Sbjct: 147 ------AISFAQLANDDTWSVLEISSFQLETIER-FRPEIAAILNITPDHLDRHGTFEKY 199

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS--FE 200
           A  K  +F +       +L   N+   E  K  +  + W      VK  T  +     F 
Sbjct: 200 AAAKERIFENQREHDFAILNADNEPCVEIAKRVKSQVLWFSRQHEVKHGTFVREDKIYFR 259

Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
            P  G    + + +M + G HN  N  V A   +G+   V  E +   +   +   HR++
Sbjct: 260 DPK-GEREIMPVADMLLKGAHNVEN--VLAAVCVGVAASVAPEQIRKAVSQFKAVEHRLE 316

Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAK 304
                ++GV + +DSKATN++AT   L    KG    ++LGG+ K
Sbjct: 317 YTA-TVKGVDYYNDSKATNVDATIKALESFSKG--VHLILGGKDK 358

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Koribacter versatilis (strain Ellin345) (taxid: 204669)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q5X1S4|MURD_LEGPA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila (strain Paris) GN=murD PE=3 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 146/303 (48%), Gaps = 53/303 (17%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           Q+G  +  +++  A+ I  S  ++A+TGTNGKSTV T VG+M    G    V GN+G P+
Sbjct: 87  QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  + +   +  + + V+E+SS+Q+++      P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
              K                   Q +    K   FN   +   P     T+ K  SF  +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQTDIKCISFGKD 237

Query: 201 VPAV---GVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
            P++   G++ Q             L + ++ + G HN+ NA  A         G+ ++ 
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
           + + ++     PHR Q V R++ GV W++DSK TN+ AT + +  + G    K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354

Query: 302 QAK 304
           Q K
Sbjct: 355 QGK 357

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Legionella pneumophila (strain Paris) (taxid: 297246)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q2RK81|MURD_MOOTA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Moorella thermoacetica (strain ATCC 39073) GN=murD PE=3 SV=1

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 149/289 (51%), Gaps = 14/289 (4%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA     G  V SEL+ A +++P  +K++A+TGTNGK+T  +  G++L   G  A VGGN
Sbjct: 83  LARARARGIPVWSELELAYRLLPPGVKVVAITGTNGKTTTTSLCGRILQEAGWPAVVGGN 142

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           +G PL +     IA P S       V EVSS+Q+E     F P V+ +LN+TPDHL+RH 
Sbjct: 143 IGIPLVK-ELQEIA-PGS-----YVVCEVSSFQLEAITS-FHPQVAAILNITPDHLDRHG 194

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAK 195
           +++NY   K  + ++       +L + + H      G R  + +      P +    E  
Sbjct: 195 SLENYIAAKARVMAYQEARDFAILNYDDPHTRSLAGGARSRVLFFSRRERPPLGAWLEDG 254

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
               ++ A G V       + + G HN  N+  AAL    L +GVD E L  T++     
Sbjct: 255 VICCDLGAGGTVKLCHCEELSLKGSHNLENSMAAALVA--LALGVDPEQLTRTLKTFPAV 312

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
           PHR++ V  +I GV +++DSK TN EAT   + +   +  V++ GG+ K
Sbjct: 313 PHRLEPVA-EINGVCYINDSKGTNPEATMKAI-NAYSNPLVLIAGGRNK 359

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q5ZSA3|MURD_LEGPH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=murD PE=3 SV=1

 Score =  114 bits (285), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 145/303 (47%), Gaps = 53/303 (17%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           Q+G  +  +++  A+ I  S  ++A+TGTNGKSTV T VG+M    G    V GN+G P+
Sbjct: 87  QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  + +   +  + + V+E+SS+Q+++      P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
              K                   Q +    K   FN   +   P      + K  SF  +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237

Query: 201 VPAV---GVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
            P++   G++ Q             L + ++ + G HN+ NA  A         G+ ++ 
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
           + + ++     PHR Q V R++ GV W++DSK TN+ AT + +  + G    K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354

Query: 302 QAK 304
           Q K
Sbjct: 355 QGK 357

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) (taxid: 272624)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|A0Q5C2|MURD_FRATN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Francisella tularensis subsp. novicida (strain U112) GN=murD PE=3 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 139/284 (48%), Gaps = 46/284 (16%)

Query: 27  RVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
           +++S++D   Q I  +  K +AVTG+NGKSTVVT    +L  LG ++ + GN+G P    
Sbjct: 80  KIVSDIDIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP---- 135

Query: 86  AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYA 143
                AL     KF   VVEVSS+Q+++ N   C    +  ++N++PDHL+R++  + Y 
Sbjct: 136 -----ALNKIGEKFDYCVVEVSSFQIDLFN---CVRFDLGCIINVSPDHLDRYQNFEQYK 187

Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
                       +KL L  F N      +  H   + + G +  ++      +       
Sbjct: 188 -----------QSKLNLAKFSNDFFVYDV--HNNGIKYAGEYQIIRGAIYRNSTKL---- 230

Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVA--ALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
                 L +   K+ G HN  N  V    L  LGLDI    +A++S I+  +   HR +I
Sbjct: 231 ------LDIAETKLFGEHNLENIIVVLNILDRLGLDIN---QAIDS-IKKFKGLEHRCKI 280

Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAK 304
           V + + G T+++DSK TN+ AT   L  +   K +I LLGG AK
Sbjct: 281 VKK-VNGTTYINDSKGTNVGATIAALNSITNSKNIILLLGGVAK 323

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Francisella tularensis subsp. novicida (strain U112) (taxid: 401614)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
297739715	479	unnamed protein product [Vitis vinifera]	0.954	0.609	0.738	1e-124
147779061	806	hypothetical protein VITISV_002512 [Viti	0.790	0.300	0.725	1e-99
168039117	521	predicted protein [Physcomitrella patens	0.934	0.548	0.498	2e-79
302753318	492	hypothetical protein SELMODRAFT_229823 [	0.928	0.577	0.505	2e-78
302804608	492	hypothetical protein SELMODRAFT_119501 [	0.928	0.577	0.494	3e-77
302804600	492	hypothetical protein SELMODRAFT_119124 [	0.928	0.577	0.508	6e-75
147774763	926	hypothetical protein VITISV_028258 [Viti	0.673	0.222	0.512	9e-69
225454866	307	PREDICTED: UDP-N-acetylmuramoylalanine--	0.735	0.732	0.508	1e-67
303273586	647	predicted protein [Micromonas pusilla CC	0.924	0.437	0.324	5e-34
253997371	452	UDP-N-acetylmuramoylalanine--D-glutamate	0.826	0.559	0.302	5e-28

>gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/294 (73%), Positives = 252/294 (85%), Gaps = 2/294 (0%)

Query: 13  LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
           L++ GL+ LLQSGKRV+SELDFAA+++PRSIKILAVTGTNGKSTV TF GQML+HLGIE 
Sbjct: 87  LESHGLSFLLQSGKRVLSELDFAAEILPRSIKILAVTGTNGKSTVATFSGQMLSHLGIEV 146

Query: 73  FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
           FVGGNLG PLSEAA  C+  PS KP FQVAVVEVSSYQ+E+PNK+FCP+V+VVLNLT DH
Sbjct: 147 FVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVAVVLNLTSDH 206

Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HRFNLAWIGAFPGVKI 190
           LERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++   +  NLAWIGAFPGVK+
Sbjct: 207 LERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNEVNLAWIGAFPGVKV 266

Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
           D E K AS  VPA+GVVS+L+L  + VMG HNY+NAAVAALSVLGLD+G+D EA++STIE
Sbjct: 267 DKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAISSTIE 326

Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
            LR PPHRMQIVH+D  GVTW+DDSKATN+EAT TGL+ LK  K VILLGG AK
Sbjct: 327 KLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSVILLGGLAK 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779061|emb|CAN60311.1| hypothetical protein VITISV_002512 [Vitis vinifera]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 177/244 (72%), Positives = 206/244 (84%), Gaps = 2/244 (0%)

Query: 64  MLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS 123
           ML+HLGIE FVGGNLG PLSEAA  C+  PS KP FQVAVVEVSSYQ+E+PNK+FCP+V+
Sbjct: 239 MLSHLGIEVFVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVA 298

Query: 124 VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HRFNLAW 181
           VVLNLT DHLERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++   +  NLAW
Sbjct: 299 VVLNLTSDHLERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNEVNLAW 358

Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241
           IGAFPGVK+D E K AS  VPA+GVVS+L+L  + VMG HNY+NAAVAALSVLGLD+G+D
Sbjct: 359 IGAFPGVKVDKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGID 418

Query: 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
            EA++STIE LR PPHRMQIVH+D  GVTW+DDSKATN+EAT TGL+ LK  K VILLGG
Sbjct: 419 TEAISSTIEKLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSVILLGG 478

Query: 302 QAKE 305
            AK+
Sbjct: 479 LAKK 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens] gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella patens] gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/289 (49%), Positives = 195/289 (67%), Gaps = 3/289 (1%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           +A  +Q+G    SEL FAA  +P +IK+ AVTGTNGKSTV TF  Q+L + G+  FVGGN
Sbjct: 134 IAAAIQAGVPAFSELGFAAAALPGNIKVAAVTGTNGKSTVTTFTSQILRNAGVRTFVGGN 193

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG PLS+    C+A P+  P F VAVVEVSSYQ+E+P   F P  +V+LNLTPDHLERHK
Sbjct: 194 LGTPLSDGVLQCLAFPAEDPPFSVAVVEVSSYQLELPGS-FHPKAAVILNLTPDHLERHK 252

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWIGAFPGVKIDTEAK 195
           +M+ Y   KC +FS M  + + ++P  +  L    A+ G +   AW+G  PGV++D +A+
Sbjct: 253 SMEAYGSIKCRVFSRMEASDVAIIPQSDVLLRRLAAMSGSQATRAWMGGLPGVQLDKDAR 312

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
            A   VP  GV ++L L +++ +G HN HNA  AAL  L LD+G+  E + + I  L+ P
Sbjct: 313 RAIVVVPTTGVEARLYLSSLQAVGTHNAHNAGTAALLALSLDVGLQSEDIQAAIPHLKAP 372

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
           PHRM+IVH+D QGV WV+DSKATN+++T  G+  + G K V+LLGGQAK
Sbjct: 373 PHRMEIVHQDDQGVVWVNDSKATNVDSTSVGIRSIVGKKAVVLLGGQAK 421

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii] gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/291 (50%), Positives = 195/291 (67%), Gaps = 7/291 (2%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA  + SG   +SEL FAA+  P+++KI AVTGTNGKSTV TF GQ+L   G+  FVGGN
Sbjct: 102 LAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGN 161

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG P S+AA  C   PS  P +Q AV+EVSSYQ+E+P   F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFKFPSDDPPYQAAVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNL----AWIGAFPGVKIDTE 193
           +M+NY  TKC LF  M ++KL ++P  ++ L +    +++N     AW+GA PGV++D++
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHADEFLRKV--AYKYNSGSTKAWLGALPGVQLDSQ 278

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           A+ A   VP     ++L L  +K +G HN  NAA A+L  L LD+GVD   L + I  L 
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLT 338

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
             PHRMQIV +D +GV W++DSKATN++A  TG+  L   K VILLGG AK
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAK 389

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii] gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 144/291 (49%), Positives = 194/291 (66%), Gaps = 7/291 (2%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA  + SG   +SEL  AA+  P+++KI AVTGTNGKSTV TF GQ+L   G+  F+GGN
Sbjct: 102 LAYAMDSGIPTISELGLAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFIGGN 161

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG P S+AA  C   PS  P +QV V+EVSSYQ+E+P   F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFKFPSDDPPYQVTVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNL----AWIGAFPGVKIDTE 193
           +M+NY  TKC LF  M ++KL ++P  ++ L +    +++N     AW+GA PG+++D++
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHADEFLRKV--AYKYNSGSTKAWLGALPGIQLDSQ 278

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           A+ A   VP     ++L L  +K +G HN  NAA A+L  L LD+GVD   L + I  L 
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLT 338

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
             PHRMQIV +D +GV W++DSKATN++A  TG+  L   K VILLGG AK
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAK 389

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii] gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]

 Score =  286 bits (733), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 148/291 (50%), Positives = 195/291 (67%), Gaps = 7/291 (2%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA  + SG   +SEL FAA+  P+++KI AVTGTNGKSTV TF GQ+L   G+  FVGGN
Sbjct: 102 LAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGN 161

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG P S+AA  C   PS  P +QV V+EVSSYQ+E+P   F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFMFPSDDPPYQVTVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN----LAWIGAFPGVKIDTE 193
           +M+NY  TKC LF  M ++KL ++P G++ L +    +++N     AW+GA PGV++D +
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHGDEFLRKV--AYKYNSGSTKAWLGALPGVQLDNQ 278

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           A+ A   VP     ++L L  +K +G HN  NAA A+L  L LD+GVD   L + I  L 
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDLGVDEHKLQAAIGQLT 338

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
             PHRMQIV +D +GV W++DSKATN++A  TG+  L   K VILLGG AK
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAK 389

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774763|emb|CAN60280.1| hypothetical protein VITISV_028258 [Vitis vinifera]

 Score =  266 bits (680), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 145/283 (51%), Positives = 174/283 (61%), Gaps = 77/283 (27%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
           + SGKR++S+LDFAA+++PRSIKILA TGTNGKST+ TF GQML+HLGIE          
Sbjct: 432 MHSGKRILSKLDFAAEILPRSIKILAATGTNGKSTIATFSGQMLSHLGIE---------- 481

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
                              VAVVEVSSYQ+E+PNK+FCP++ V LNLT DHLERHKTMKN
Sbjct: 482 -------------------VAVVEVSSYQLEVPNKHFCPSIVVGLNLTSDHLERHKTMKN 522

Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
           YA+TK  L  +                                                V
Sbjct: 523 YAITKKRLPVY------------------------------------------------V 534

Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
           PA+GVVS+L+L  + VMGRHNY+N AVAALS LGLD+ +D EA++STIE LR PPHRMQI
Sbjct: 535 PAIGVVSKLKLGALNVMGRHNYYNVAVAALSDLGLDMXIDTEAISSTIEKLRVPPHRMQI 594

Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
           VH+D   VTW+DDSKATN+EAT  GL+ L   K VI LGG AK
Sbjct: 595 VHKDSYEVTWIDDSKATNVEATYIGLLGLNEQKSVIPLGGLAK 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454866|ref|XP_002275450.1| PREDICTED: UDP-N-acetylmuramoylalanine--D-glutamate ligase-like [Vitis vinifera]

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 150/295 (50%), Positives = 181/295 (61%), Gaps = 70/295 (23%)

Query: 13  LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
           L++ GL+ LLQSGKR++S+LDFAA+++PRSIKILA TGTNGKST+ TF GQML+HLGIE 
Sbjct: 10  LESHGLSFLLQSGKRILSKLDFAAEILPRSIKILAATGTNGKSTIATFSGQMLSHLGIEV 69

Query: 73  FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
            V GNLG PLSEAA  C+  PS KP FQVAVVEVSSYQ+E+PNK+FCP+V V L+LT DH
Sbjct: 70  IVEGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVVVGLDLTSDH 129

Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
           LERHKTMKNYA+TKC L SHM N+KLG+LPF               L+ +G   G  IDT
Sbjct: 130 LERHKTMKNYAITKCRLLSHMSNSKLGILPFVAA------------LSVLGLDMG--IDT 175

Query: 193 EAKTASFE---VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
           EA +++ E   VP          H M++                                
Sbjct: 176 EAISSTIEKLRVPP---------HRMQI-------------------------------- 194

Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
                       VH+D   VTW+DDSKATN+EAT  GL+ L   K VI LGG AK
Sbjct: 195 ------------VHKDSYEVTWIDDSKATNVEATYIGLLGLNEQKSVIPLGGLAK 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|303273586|ref|XP_003056153.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462237|gb|EEH59529.1| predicted protein [Micromonas pusilla CCMP1545]

 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 164/357 (45%), Gaps = 74/357 (20%)

Query: 20  CLLQSGKR--VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           C  + G +  V+SEL FA+Q +P+ + I+A++GTNGKSTV +F  Q+L       F+GGN
Sbjct: 199 CQTKQGSKCTVISELAFASQCLPKMLPIVAISGTNGKSTVCSFTAQLLASCDCRTFMGGN 258

Query: 78  LGNPLSEAAF----------HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLN 127
           +G PLS+ A           H   L    P +  AVVE SSYQ++ P        + +LN
Sbjct: 259 IGKPLSDCALEFILAEHICGHLADLGHHWP-YDAAVVECSSYQLDHPGTLRF-DAACILN 316

Query: 128 LTPDHLERHKTMKNYALTKCHLFSHMVNT-KLGLLP-----------------FGNQHL- 168
           LTPDHLERHK+M NYA  K  +F+ +  T  L +LP                     H+ 
Sbjct: 317 LTPDHLERHKSMANYATAKTQIFAGLRGTHTLAVLPKRESARGRHQSYQVESDSTTDHIV 376

Query: 169 -----------------------------NEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
                                        NE +      LA IG+ PGVK+D   K A  
Sbjct: 377 DLDYDGATLLEKCREAVIKTLMRRVSETPNERVACIGGRLAHIGSLPGVKVDLNTKIAIV 436

Query: 200 EVPAVGVV------SQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGVDVEALNSTIEIL 252
            +P+          S + L  +  +G HN  NA++A L    L      V  L   ++ L
Sbjct: 437 HLPSNRSSSRQNSPSYVDLSAVSSLGTHNILNASIALLMAHSLSPKDFTVARLKVGLDRL 496

Query: 253 RTPPHRMQIVHR----DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305
           +  PHRMQ+V +      +G+ WV+DSKATN+EA   GL    G + +   G  + E
Sbjct: 497 KLLPHRMQLVAQTGNPSFRGIHWVNDSKATNIEAAIVGLQSY-GRRALAKTGTASNE 552

Source: Micromonas pusilla CCMP1545

Species: Micromonas pusilla

Genus: Micromonas

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylotenera mobilis JLW8] gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera mobilis JLW8]

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 146/298 (48%), Gaps = 45/298 (15%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
           +Q G  V+ +++  AQ  P S K++A+TG NGK+TV T VG+M    G++  V GN+G P
Sbjct: 90  IQRGIPVVGDVELFAQYRPTSAKLIAITGANGKTTVTTLVGEMCKSAGLKTIVAGNIGLP 149

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
           + +       L    P   V V+E+SS+Q+E  N       + +LNL+ DH++R+ +M++
Sbjct: 150 VLD------TLSMETP--DVYVLELSSFQLETTNSLLA-DAATMLNLSEDHMDRYDSMQS 200

Query: 142 YALTKCHLFSH---------------MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP 186
           YA+ K H+F H               M   KL  + FG   L++ +    + +  +    
Sbjct: 201 YAVAKAHIFYHAKLQVLNRDDAWSLMMARAKLAQVTFG---LDDVVAEQDYGIKQVNGET 257

Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
            +              + G    + + ++K+ G HN  NA  A     G  IG+D   + 
Sbjct: 258 WL--------------SCGTHDLMNIRDLKIAGLHNASNALAAMALCRG--IGLDFAPII 301

Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
            T+   +  PHR++ V  +I  V + DDSK TN+ ATC  L  L   K V++ GG+ K
Sbjct: 302 QTLYNFKGLPHRVEWV-ANIDDVDYYDDSKGTNVGATCAALSGLS-QKVVLIAGGEGK 357

Source: Methylotenera mobilis JLW8

Species: Methylotenera mobilis

Genus: Methylotenera

Family: Methylophilaceae

Order: Methylophilales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
TIGR_CMR|CHY_2071	451	CHY_2071 "UDP-N-acetylmuramoyl	0.937	0.636	0.289	1.5e-28
TIGR_CMR|GSU_3071	452	GSU_3071 "UDP-N-acetylmuramoyl	0.421	0.285	0.366	8e-28
UNIPROTKB|Q97RU8	450	murD "UDP-N-acetylmuramoylalan	0.856	0.582	0.298	9.9e-23
TIGR_CMR|CPS_4467	471	CPS_4467 "UDP-N-acetylmuramoyl	0.924	0.600	0.291	1.2e-22
TIGR_CMR|CJE_0482	402	CJE_0482 "UDP-N-acetylmuramoyl	0.447	0.340	0.309	1.7e-16
TIGR_CMR|SPO_1187	466	SPO_1187 "UDP-N-acetylmuramoyl	0.323	0.212	0.351	4e-16
TIGR_CMR|SO_4221	439	SO_4221 "UDP-N-acetylmuramoyla	0.388	0.271	0.361	8e-14
TIGR_CMR|BA_4051	450	BA_4051 "UDP-N-acetylmuramoyla	0.839	0.571	0.251	1.5e-13
UNIPROTKB|P14900	438	murD [Escherichia coli K-12 (t	0.689	0.481	0.269	3.2e-12
UNIPROTKB|Q9KPG5	440	murD "UDP-N-acetylmuramoylalan	0.741	0.515	0.255	7.5e-12

TIGR_CMR|CHY_2071 CHY_2071 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 88/304 (28%), Positives = 154/304 (50%)

Query:     2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
             W L +      L    +A  L+ G  V+ E++ A + +     I+AVTGTNGK+T  +++
Sbjct:    69 WELLVVSPGVPLTEEPIAYSLKEGIPVLGEIELAYKEL--KAPIIAVTGTNGKTTTTSWI 126

Query:    62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
             G++L   G +  + GN+G PL EA          + ++    +EVSS+Q+E   K F P 
Sbjct:   127 GEVLKIAGFKTLIAGNIGYPLIEAV---------EEEWDAVSLEVSSFQLETI-KSFKPK 176

Query:   122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW 181
             V+V+LNLTPDHL+RHKT++ Y   K  +F +   T + +L + +  +    +     + +
Sbjct:   177 VAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKTPGRVFY 236

Query:   182 IGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
                   ++     K     V ++GV  ++  + N+ + G HN  NA +A ++      GV
Sbjct:   237 FSQKEELEEGVFVKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENA-LATVAACW-SFGV 294

Query:   241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
               + +   +   +   HR++ V  +I GV +V+DSK TN ++T   L   +    V++ G
Sbjct:   295 SGKNIERGLRNFQGVAHRLEKV-AEINGVLYVNDSKGTNPDSTIKALNSYE-RPIVLIAG 352

Query:   301 GQAK 304
             G+ K
Sbjct:   353 GRNK 356

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|GSU_3071 GSU_3071 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 230 (86.0 bits), Expect = 8.0e-28, Sum P(2) = 8.0e-28
 Identities = 51/139 (36%), Positives = 82/139 (58%)

Query:    23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
             ++G+ V++E++ A++ I  +  ++A+TGTNGK+T  T  G++    G   FVGGN+GNPL
Sbjct:    90 RAGREVITEIELASRFI--TAPLVAITGTNGKTTTTTLTGELFAGCGFRTFVGGNIGNPL 147

Query:    83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
              E       L  +       VVE+SS+Q+E     F PTV+V+LN+T DHL+R+ T + Y
Sbjct:   148 IE-------LVETGAAVDRVVVEISSFQLEWIRS-FRPTVAVLLNITEDHLDRYATYQEY 199

Query:   143 ALTKCHLFSHMVNTKLGLL 161
                K  +F +   +   +L
Sbjct:   200 IDAKARIFKNQTASDWAVL 218

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

UNIPROTKB|Q97RU8 murD "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 267 (99.0 bits), Expect = 9.9e-23, P = 9.9e-23
 Identities = 84/281 (29%), Positives = 140/281 (49%)

Query:    22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
             L  G  V++E++ A  +      I+ +TG+NGK+T  T +G++L   G    + GN+G P
Sbjct:    93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150

Query:    82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
              S+ A     + S K      V+E+SS+Q+ +  + F P ++V+ NL P H++ H +   
Sbjct:   151 ASQVA----QIASDK---DTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202

Query:   142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFE 200
             Y   K ++ + M      +L F NQ L + +       A +  F  + K+D  A     +
Sbjct:   203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDG-AYLEDGQ 258

Query:   201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
             +   G V  +  + + V G HN  NA +A ++V  L   VD + +  T+       HR+Q
Sbjct:   259 LYFRGEVV-MAANEIGVPGSHNVENA-LATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQ 315

Query:   261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
              V  DI+GV + +DSK+TN+ AT   L      K V++ GG
Sbjct:   316 FVD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGG 355

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|CPS_4467 CPS_4467 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 267 (99.0 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 88/302 (29%), Positives = 146/302 (48%)

Query:    13 LKATGLACLLQSGKRVMSELDFAAQVIPRSI---KILAVTGTNGKSTVVTFVGQMLNHLG 69
             L + G+  L+     V+ +++    V    I   K+LAVTG+NGKSTVV+ +  +   +G
Sbjct:    87 LVSEGITALIPENCLVIGDVELFCLVNNSRISPMKMLAVTGSNGKSTVVSLLASLAKAIG 146

Query:    70 IEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ--VAVVEVSSYQMEIPNKYFCPTVSVVLN 127
             + A + GN+G P+     H   + +S+   Q  + +VE+SS+Q+E  +       SV LN
Sbjct:   147 VNAALAGNIGEPILNL-LHRENVYNSQLANQPDIVIVELSSFQLETLSSMHAIAASV-LN 204

Query:   128 LTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG 187
             L+ DHL+RHKT+ NY   K  ++      K+ ++   +Q  N  +         +     
Sbjct:   205 LSDDHLDRHKTLANYQAIKQSIYPQ---AKIAVVSREDQASNTLVAAQEIISFGLNKPEQ 261

Query:   188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
                  +A      V   G  + + +  + + G HN  N  +AAL+ LG   G  + A+  
Sbjct:   262 DCFGLQAIDNKM-VMMFGEQALISIDELPLAGMHNALNY-MAALA-LGYSAGWSLSAMTE 318

Query:   248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATC---TGLMD-LKG-HKCVILLGGQ 302
              +       HR Q V  +   + W++DSKATN+ AT    TGL+  L G +K +++ GG 
Sbjct:   319 NLAGFMGLAHRCQRVASE-DYIQWINDSKATNVGATLAAITGLVPTLTGQNKLILIAGGD 377

Query:   303 AK 304
              K
Sbjct:   378 GK 379

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|CJE_0482 CJE_0482 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 185 (70.2 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
 Identities = 48/155 (30%), Positives = 78/155 (50%)

Query:    21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
             L+Q  K + SE DF   ++P+S+ I   +GTNGK+T       +L+H+G  A +GGN+G 
Sbjct:    71 LIQKAKNLQSEYDFFYDIMPKSVWI---SGTNGKTTTTQMATHLLSHIG--AVMGGNVGT 125

Query:    81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
             PL+E            P  ++ ++E SS+ +   +K   P +  +L ++PDHL  H +  
Sbjct:   126 PLAEL----------NPYEKLWILETSSFTLHYTHKAK-PEIYALLPISPDHLSWHGSFD 174

Query:   141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH 175
             NY   K  +   M    + +LP    + N   K H
Sbjct:   175 NYVQDKLSVLKRMNECDVTILP--KIYANTPTKAH 207

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|SPO_1187 SPO_1187 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 156 (60.0 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
 Identities = 38/108 (35%), Positives = 59/108 (54%)

Query:    44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
             +++AVTG+NGKST    +  +L+  G    + GN+G  + +        P  +    V V
Sbjct:   121 RVVAVTGSNGKSTTSALIHHILSEAGRPVQLAGNIGRGVLDIE------PGEEGS--VVV 172

Query:   104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151
             +E+SSYQ ++  +   P V+V  NL+PDHL+RH  M  Y   K  LF+
Sbjct:   173 LELSSYQTDLA-RALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFA 219

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|SO_4221 SO_4221 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 200 (75.5 bits), Expect = 8.0e-14, P = 8.0e-14
 Identities = 47/130 (36%), Positives = 71/130 (54%)

Query:    22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
             L  G  V+ +++ FA ++  R   ++ +TG+NGK+TV T VG+ML   GI   VGGN+G 
Sbjct:    87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKTTVTTLVGEMLREAGIAVAVGGNIGI 146

Query:    81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
             P         AL   K    + V+E+SS+Q+E  +   C   S  LN+T DH++R+  M 
Sbjct:   147 P---------ALDLLKENADIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196

Query:   141 NYALTKCHLF 150
              Y   K  L+
Sbjct:   197 AYRKAKLRLY 206

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|BA_4051 BA_4051 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 198 (74.8 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 69/274 (25%), Positives = 124/274 (45%)

Query:    28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
             +++E++ A ++       + +TG+NGK+T      +ML        + GN+G    E A 
Sbjct:    99 IVTEVELAYRI--SEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEVA- 155

Query:    88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
                    +K   +V V E+SS+Q+ +  + F P ++  LNL   HL+ H T K Y L K 
Sbjct:   156 -----QDAKEN-EVVVTELSSFQL-MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKA 208

Query:   148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
             ++F +       ++   +  +       +           ++     K  +    A  VV
Sbjct:   209 NIFKNQTENDYSVINADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKAEKVV 268

Query:   208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
                ++ ++ + G+HN  N  +AA+S+  L +GV  EA+ + ++      HR++ V   I 
Sbjct:   269 ---EVDDIVLPGQHNLENI-LAAMSIAKL-LGVSNEAITAVLKRFTGVKHRLEYV-TTIN 322

Query:   268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
                + +DSKATN+ AT   L        V+L GG
Sbjct:   323 NRKFYNDSKATNMLATEKALSAFT-QPTVLLAGG 355

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

UNIPROTKB|P14900 murD [Escherichia coli K-12 (taxid:83333)]

 Score = 187 (70.9 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 63/234 (26%), Positives = 110/234 (47%)

Query:    18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
             L+    +G  ++ +++   +       I+A+TG+NGKSTV T VG+M    G+   VGGN
Sbjct:    82 LSAAADAGIEIVGDIELFCR--EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN 139

Query:    78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
             +G P         AL     + ++ V+E+SS+Q+E  +       + +LN+T DH++R+ 
Sbjct:   140 IGLP---------ALMLLDDECELYVLELSSFQLETTSSLQA-VAATILNVTEDHMDRYP 189

Query:   138 T-MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAK 195
               ++ Y   K  ++    N K+ ++   +  L   I+G        G   G   ++ +  
Sbjct:   190 FGLQQYRAAKLRIYE---NAKVCVVN-ADDALTMPIRGADERCVSFGVNMGDYHLNHQQG 245

Query:   196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNS 247
                  V    V   L +  MK+ G+HNY NA  A+A     GL     ++AL +
Sbjct:   246 ETWLRVKGEKV---LNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTT 296

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0071555 "cell wall organization" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=IEA;IDA

GO:0009252 "peptidoglycan biosynthetic process" evidence=IEA

UNIPROTKB|Q9KPG5 murD "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 184 (69.8 bits), Expect = 7.5e-12, P = 7.5e-12
 Identities = 66/258 (25%), Positives = 117/258 (45%)

Query:     2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
             W L WL   +  +   G+A        +L +G  V+ +++  A  +     ++A+TG+NG
Sbjct:    61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118

Query:    54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
             KSTV    G + N  G++A VGGN+G P         AL    P  ++ V+E+SS+Q+E 
Sbjct:   119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169

Query:   114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
              +       +  LNL+ DH++R++ M++Y   K  +F H     +      N    +   
Sbjct:   170 TSSLKLKAAAF-LNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV------NADDTQTFP 222

Query:   174 GHRFNLAWI--GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVA 229
              H  +L  +  G     +    A+    E       + +    + ++GRHN  N    +A
Sbjct:   223 DHAAHLQVVTFGVEQAAQFSL-AQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLA 281

Query:   230 ALSVLGLDIGVDVEALNS 247
              L   G++  + ++AL S
Sbjct:   282 LLDSAGVNFRLALDALKS 299

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.9	LOW CONFIDENCE prediction!
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025526001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (402 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037717001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (527 aa)	•		•			•	•		0.989
	GSVIVG00003087001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (510 aa)	•		•	•		•	•		0.983
	GSVIVG00017740001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (320 aa)	•		•	•			•		0.975
	GSVIVG00003447001	SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (374 aa)	•		•				•		0.975
	GSVIVG00038228001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (344 aa)	•		•				•		0.973
	GSVIVG00000431001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (510 aa)	•		•			•	•	•	0.954
	GSVIVG00027244001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (424 aa)	•						•		0.948
	GSVIVG00032399001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (228 aa)	•						•		0.946
	GSVIVG00021622001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (423 aa)	•						•		0.940
	GSVIVG00027807001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (471 aa)	•		•				•		0.919

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	306
COG0771	448	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-gluta	2e-58
TIGR01087	433	TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-gl	1e-56
PRK14106	450	PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	3e-40
PRK02705	459	PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-37
PRK02472	447	PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-37
PRK03803	448	PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-36
PRK01390	460	PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-34
PRK02006	498	PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-33
PRK03815	401	PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	4e-29
pfam08245	178	pfam08245, Mur_ligase_M, Mur ligase middle domain	1e-28
PRK01368	454	PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	7e-28
PRK04308	445	PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	3e-27
PRK03806	438	PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	5e-27
PRK01438	480	PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-26
PRK01710	458	PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-25
PRK04663	438	PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-24
PRK04690	468	PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	7e-24
PRK00141	473	PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-23
COG0770	451	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide sy	3e-21
PRK00139	460	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-gluta	6e-21
TIGR01085	464	TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide sy	8e-21
PRK00683	418	PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-20
COG0769	475	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synt	3e-19
TIGR01143	417	TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--	8e-19
PRK03369	488	PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-16
PRK11929	958	PRK11929, PRK11929, putative bifunctional UDP-N-ac	2e-16
PRK11929	958	PRK11929, PRK11929, putative bifunctional UDP-N-ac	1e-13
COG0773	459	COG0773, MurC, UDP-N-acetylmuramate-alanine ligase	1e-09
TIGR01081	448	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamm	1e-09
PRK14022	481	PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-g	1e-08
TIGR01082	448	TIGR01082, murC, UDP-N-acetylmuramate--alanine lig	3e-08
PRK00421	461	PRK00421, murC, UDP-N-acetylmuramate--L-alanine li	9e-06
PRK14573	809	PRK14573, PRK14573, bifunctional D-alanyl-alanine	5e-05
PRK11930	822	PRK11930, PRK11930, putative bifunctional UDP-N-ac	3e-04
pfam02875	88	pfam02875, Mur_ligase_C, Mur ligase family, glutam	0.001

>gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

 Score =  193 bits (492), Expect = 2e-58
 Identities = 79/293 (26%), Positives = 137/293 (46%), Gaps = 33/293 (11%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
             +G  ++ +++   ++   +  I+A+TGTNGK+T  + +  +L   G++A +GGN+G P
Sbjct: 90  KAAGIEIIGDIELFYRLSGEA-PIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMK 140
             E                V V+E+SS+Q+E   +    P ++V+LN++ DHL+RH +M+
Sbjct: 149 ALELL-------EQAEPADVYVLELSSFQLETTSS--LRPEIAVILNISEDHLDRHGSME 199

Query: 141 NYALTKCHLFSHMVNTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFP----GVKIDTEAK 195
           NYA  K  +      T++ ++   +      A +  +  + W         G  I     
Sbjct: 200 NYAAAKLRILEGQ--TEVAVINADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL 257

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
               E              +K+ G HN  N  AA+A    LG+     +EAL+S      
Sbjct: 258 VFKGEKLLPAD-------ELKLPGAHNLENALAALALARALGVPPEAILEALSS----FT 306

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKEC 306
             PHR++ V  +  GV +++DSKATN++AT   L    G   +++ GG  K  
Sbjct: 307 GLPHRLEFV-GEKDGVLFINDSKATNVDATLAALSGFDG-PVILIAGGDDKGA 357

Length = 448

>gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase

 Score =  188 bits (479), Expect = 1e-56
 Identities = 67/286 (23%), Positives = 132/286 (46%), Gaps = 22/286 (7%)

Query: 21  LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
             + G  V+ +++   +++P    ++A+TGTNGK+T  + +  +L   G++AF+GGN+G 
Sbjct: 82  AAKRGIPVVGDIELFLRLVPL--PVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGT 139

Query: 81  PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
           P  E               ++ V+E+SS+Q+E       P ++++LN++ DHL+ H + +
Sbjct: 140 PALEVLDQ--------EGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFE 190

Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
           +Y   K  +F+      + +L   +       +  +  + W           +       
Sbjct: 191 DYVAAKLKIFARQTEGDVAVLNADDPRFARLAQKSKAQVIWFS-------VEKDAERGLC 243

Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
           +   G+  +       ++G HN  N   A    L   +G+++EA+   +   +  PHR++
Sbjct: 244 IRDGGLYLKPNDLEGSLLGLHNAENILAAIA--LAKSLGLNLEAILEALRSFKGLPHRLE 301

Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKEC 306
            V     GV + +DSKATN+ AT   L        ++++GG  K  
Sbjct: 302 YVG-QKNGVHFYNDSKATNVHATLAALSAFDN-PVILIVGGDDKGA 345

[Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 433

>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  145 bits (368), Expect = 3e-40
 Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 35/288 (12%)

Query: 28  VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
           V+ E++ A +       I+A+TGTNGK+T  T +G++  + G +  V GN+G PL +A  
Sbjct: 95  VIGEVELAYRFSKA--PIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPLIDAV- 151

Query: 88  HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
                        + V EVSS+Q+E   K F P V  +LN+TPDHL+RHKTM+NY   K 
Sbjct: 152 -----EEYGED-DIIVAEVSSFQLET-IKEFKPKVGCILNITPDHLDRHKTMENYIKAKA 204

Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP---------GVKIDTEAKTAS 198
            +F +   +   +L + +       K  +  +                GV +       S
Sbjct: 205 RIFENQRPSDYTVLNYDDPRTRSLAKKAKARV-----IFFSRKSLLEEGVFVKNGKIVIS 259

Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
                  V+    +  + + G HN  N  AA AA       +G+  + + +T++  +   
Sbjct: 260 LGGKEEEVID---IDEIFIPGEHNLENALAATAA----AYLLGISPDVIANTLKTFKGVE 312

Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
           HR++ V  +I GV +++DSK TN +A    L   +    V++ GG  K
Sbjct: 313 HRIEFV-AEINGVKFINDSKGTNPDAAIKALEAYET-PIVLIAGGYDK 358

Length = 450

>gnl|CDD|235059 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  138 bits (350), Expect = 1e-37
 Identities = 94/301 (31%), Positives = 142/301 (47%), Gaps = 47/301 (15%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  V+ E++ A + + + I  + +TGTNGK+TV   +  +L   G+ A   GN+G   
Sbjct: 90  ERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYAA 148

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
            E A   +       K    V E+SSYQ+E   +   P + +    TPDHLERH T++NY
Sbjct: 149 CELA---LLRSGKAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENY 204

Query: 143 ALTKCHLFSHMVNTKLGLL----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
              K  L      +++ +L    P+  QH +   KG+     W          T+ K AS
Sbjct: 205 FAIKASLLE---RSEIRILNGDDPYLRQHRSSWPKGY-----WTS--------TQGK-AS 247

Query: 199 FEVPAVGVVSQ-----------LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEAL 245
               A G + +             L  +K+ G HN  N   AVAA  + GL      EAL
Sbjct: 248 LLGQADGWILEEGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARLAGLSAEAIAEAL 307

Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAK 304
            S   +    PHR++ +   I G+ +++DSKATN +A   GL  + G   VIL+ GG+AK
Sbjct: 308 RSFPGV----PHRLERI-GTINGIDFINDSKATNYDAAEVGLKAVPGP--VILIAGGEAK 360

Query: 305 E 305
           +
Sbjct: 361 Q 361

Length = 459

>gnl|CDD|235041 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  137 bits (348), Expect = 2e-37
 Identities = 84/283 (29%), Positives = 124/283 (43%), Gaps = 68/283 (24%)

Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+ +TG+NGK+T  T +G+ML   G  A + GN+G P SE A        +       V+
Sbjct: 110 IIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYPASEVA------QKATAD-DTLVM 162

Query: 105 EVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--------- 154
           E+SS+Q M I    F P ++V+ N+ P HL+ H T +NY   K ++  +           
Sbjct: 163 ELSSFQLMGIET--FRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINF 220

Query: 155 ----------NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
                      TK  ++PF      +   G       +  F G KI              
Sbjct: 221 DQEEVKELAKQTKATVVPFSTT--EKVEDGAYIKDGAL-YFKGEKI-------------- 263

Query: 205 GVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRM 259
                +   ++ + G HN  N  AA+AA  +L    GV  EA+    E+L T     HR+
Sbjct: 264 -----MAADDIVLPGSHNLENALAAIAAAKLL----GVSNEAI---REVLSTFSGVKHRL 311

Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGG 301
           Q V   I G  + +DSKATN+ AT      L G ++ V+LL G
Sbjct: 312 QYV-GTIDGRKFYNDSKATNILAT---QKALSGFNQPVVLLAG 350

Length = 447

>gnl|CDD|235160 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  135 bits (341), Expect = 2e-36
 Identities = 87/280 (31%), Positives = 133/280 (47%), Gaps = 43/280 (15%)

Query: 41  RSIK--ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPK 98
           R  K  ++A+TG+NGKSTV T VG+M    G    VGGN+G P         AL      
Sbjct: 104 REAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP---------ALDLLSDD 154

Query: 99  FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMV 154
            ++ V+E+SS+Q+E  +      V+ VLN++ DH++R+  ++ Y   K  ++      + 
Sbjct: 155 PELYVLELSSFQLETTHSLNA-EVATVLNISEDHMDRYSDLEAYHQAKHRIYRGAKQVVF 213

Query: 155 NTK----LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
           N        L+P  NQ              W     G++        +     +  V +L
Sbjct: 214 NRDDALTRPLVPD-NQPCLSFGLNAPDFDEW-----GLREGDGETYLAHGFERLMPVREL 267

Query: 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQIVHRDIQ 267
                K+ G HN  N A+AAL+ LG   G+  EA+   +E+LRT    PHR + V R++ 
Sbjct: 268 -----KLRGSHNLAN-ALAALA-LGEAAGLPKEAM---LEVLRTFTGLPHRCEWV-REVA 316

Query: 268 GVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQAK 304
           GV + +DSK TN+ AT   +  L  H   K V++ GG  K
Sbjct: 317 GVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGK 356

Length = 448

>gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  130 bits (330), Expect = 1e-34
 Identities = 84/282 (29%), Positives = 114/282 (40%), Gaps = 50/282 (17%)

Query: 44  KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
             +A+TGTNGKST    +  +L   G +  +GGN+G  +       + L       +V V
Sbjct: 115 PFIAITGTNGKSTTTALIAHILREAGRDVQMGGNIGTAV-------LTLEPPPAG-RVYV 166

Query: 104 VEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
           +E+SSYQ++  P+    P V V+LNLTPDHL+RH TM+ YA  K  LF+           
Sbjct: 167 LELSSYQIDLAPS--LDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFA---GQGPDTAV 221

Query: 163 FG---------------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
            G                      I   +     + A  G  +D             G+ 
Sbjct: 222 IGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIP 281

Query: 208 SQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTP--PHRMQIVH 263
           S    H        N  NA  A AA   LGL        L S       P   HRM+ V 
Sbjct: 282 SLPGAH--------NAQNAAAAYAAARALGLSPEEIAAGLAS------FPGLAHRMEQVG 327

Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305
           R   GV +V+DSKATN +A    L      +   + GG+ KE
Sbjct: 328 R-RGGVLFVNDSKATNADAAAKALSSFD--RIYWIAGGKPKE 366

Length = 460

>gnl|CDD|234995 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  127 bits (322), Expect = 1e-33
 Identities = 90/324 (27%), Positives = 135/324 (41%), Gaps = 51/324 (15%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPR------SIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
           +A   + G  V  E++  AQ +        + K+LA+TGTNGK+T     G +    G +
Sbjct: 90  VAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149

Query: 72  AFVGGNLGNPLSEAAFHCI---ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNL 128
             V GN+     +     I   ALP       V V+E+SS+Q+E       P  + VLN+
Sbjct: 150 VAVAGNISPAALDKLMEAIDAGALP------DVWVLELSSFQLET-THTLAPDAATVLNI 202

Query: 129 TPDHLERHKTMKNYALTKCHLFS---------------HMV--NTKLGLLPFGNQHLNEA 171
           T DHL+ H +M  YA  K  +F                 M         + FG   L+E 
Sbjct: 203 TQDHLDWHGSMAAYAAAKARIFGPRTVRVLNRDDARVMAMAPPGGAADAVTFG---LDEP 259

Query: 172 IKGHRFNL------AWIGA-----FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
                + L      AW+                 K  +   P + +   +    +++ G 
Sbjct: 260 AADGDYGLLRDNGMAWLVEAEDRDAADPAPSRRRKKDAAPPPDIRLKRLMPADALRIRGL 319

Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
           HN  N A+AAL+ L   IG+    L   +   R  PHR+++V   I GV + DDSK TN+
Sbjct: 320 HNAAN-ALAALA-LARAIGLPAAPLLHGLREYRGEPHRVELV-ATIDGVDYYDDSKGTNV 376

Query: 281 EATCTGLMDLKGHKCVILLGGQAK 304
            AT   L  L   + V++ GG  K
Sbjct: 377 GATVAALDGL-AQRVVLIAGGDGK 399

Length = 498

>gnl|CDD|235162 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  114 bits (288), Expect = 4e-29
 Identities = 86/293 (29%), Positives = 129/293 (44%), Gaps = 61/293 (20%)

Query: 21  LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHL--GIEAFVGGNL 78
           L+Q  K ++SE D+   V+P SI I   +GTNGK+T      QM  HL     A  GGN+
Sbjct: 70  LIQKAKNLISEYDYFYDVMPFSIWI---SGTNGKTTTT----QMTTHLLEDFGAVSGGNI 122

Query: 79  GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT 138
           G PL+E               ++ V+E SS+ +   NK   P + ++L +TPDHL  H +
Sbjct: 123 GTPLAEL----------DKNAKIWVLETSSFTLHYTNKAK-PNIYLLLPITPDHLSWHGS 171

Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
            +NY   K      M    + +LP   ++                        T+A+   
Sbjct: 172 FENYVKAKLKPLKRMNEGDVAILPKKFKNTP----------------------TKAQKIF 209

Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNA----AVAALSV--LGLDIGVDVEALNS-TIEI 251
           +E          +   +    + N+       A+ AL+V  +  D  +D E LN+  I  
Sbjct: 210 YE----DEEDLAEKFGID-SEKINFKGPFLLDALLALAVYKILFD-ELDYERLNAFKIG- 262

Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
                H+++   RD QG  WVDDSKATN++AT   L   K  K  ++LGG  K
Sbjct: 263 ----KHKLE-EFRDKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGDDK 310

Length = 401

>gnl|CDD|219763 pfam08245, Mur_ligase_M, Mur ligase middle domain

 Score =  108 bits (271), Expect = 1e-28
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 31/192 (16%)

Query: 49  TGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS-----KPKFQVAV 103
           TGTNGK+T    +  +L+  G     GGN  N         I LP       K     AV
Sbjct: 1   TGTNGKTTTTELIAAILSAAGGVVGTGGNTNNA--------IGLPLLLALMPKKGADYAV 52

Query: 104 VEVSSYQMEIPNKYFC--PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161
           +E+SS+ +          P ++V+ N++PDHL+ H TM+NYA  K  +F  +    + ++
Sbjct: 53  LELSSFGLGEGRLEGLAKPDIAVITNISPDHLDYHGTMENYAAAKAEIFEGLPEDGIAVI 112

Query: 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK---TASFEVPAVGVVSQLQLH----- 213
              +  L + +K     +   G      ++ EA     A+  V + G    L        
Sbjct: 113 NADDPELAKRLKNAGAKVITFG------LENEADDLRAANIYVSSEGGEIVLFTVPGGEL 166

Query: 214 --NMKVMGRHNY 223
             ++ + GRHN 
Sbjct: 167 EISLPLPGRHNV 178

Length = 178

>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  111 bits (280), Expect = 7e-28
 Identities = 78/274 (28%), Positives = 132/274 (48%), Gaps = 30/274 (10%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
           +++K +A+TGTNGKST    +  +LN  G++  V GN+G P  +A        +SK  + 
Sbjct: 102 KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALQAK-------ASKDGY- 153

Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
             V+E+SS+Q+++  K F   ++V+LN+TPDHL+RH+ M  Y   K  +F  M      +
Sbjct: 154 --VLELSSFQLDLV-KTFTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAV 210

Query: 161 LPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH--- 213
           +   N +  E      +  R  L     F   KI     +   +  +      +      
Sbjct: 211 INIDNDYCREIFIKLQQEQRIKLI---PFSVTKILENGISVVDDKISDNFFDDISFKLPF 267

Query: 214 NMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTW 271
           N  + G+HN  N  A+ A   ++G++    +E+++S     ++ PHRMQ +   I  +++
Sbjct: 268 NKNLQGKHNCENIAASYAVAKIIGVEPKKILESISS----FQSLPHRMQYIGS-INNISF 322

Query: 272 VDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305
            +DSKATN  +    +  L       L GG  KE
Sbjct: 323 YNDSKATNAISAVQSIKALD--NIYWLAGGIPKE 354

Length = 454

>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  109 bits (275), Expect = 3e-27
 Identities = 89/312 (28%), Positives = 152/312 (48%), Gaps = 56/312 (17%)

Query: 13  LKATGLACLLQSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
            +   +    Q+G RV+ +++  A ++  R  K++A+TG+NGK+TV + VG +    G++
Sbjct: 79  ERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD 138

Query: 72  AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
             + GN+G P+ EA    +     K    V V+E+SS+Q+E   +   PT + VLN++ D
Sbjct: 139 TVIAGNIGTPVLEAE---LQREGKKA--DVWVLELSSFQLE-NTESLRPTAATVLNISED 192

Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE------AIK--GHR---FNLA 180
           HL+R+  + +YA TK  +F             G Q LN       A+K  G     F+L 
Sbjct: 193 HLDRYDDLLDYAHTKAKIF----RGD------GVQVLNADDAFCRAMKRAGREVKWFSLE 242

Query: 181 -----WIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234
                W+    G +K   E   A+ ++P  G+                 HNAA   ++ +
Sbjct: 243 HEADFWLERETGRLKQGNEDLIATQDIPLQGL-----------------HNAA-NVMAAV 284

Query: 235 GL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG 292
            L   +G+  EAL   ++  +  PHR++ +  +  GV ++DDSK TN+ AT   +  L+ 
Sbjct: 285 ALCEAVGLPREALLEHVKTFQGLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ- 342

Query: 293 HKCVILLGGQAK 304
           +   ++LGG  K
Sbjct: 343 NPLFVILGGMGK 354

Length = 445

>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  108 bits (273), Expect = 5e-27
 Identities = 91/294 (30%), Positives = 134/294 (45%), Gaps = 85/294 (28%)

Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G +  VGGN+G P         AL     + ++ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLP---------ALSLLDQECELYVL 157

Query: 105 EVSSYQMEIPNKYFCPTVS------VVLNLTPDHLERH-KTMKNYALTKCHLFSH----M 153
           E+SS+Q+E        T S       +LN+T DH++R+   ++ Y   K  ++ +    +
Sbjct: 158 ELSSFQLET-------TSSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCV 210

Query: 154 VNTKLGL-LPF--------------GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
           VN    L +P               G+ HLN   +G      W+    G K+        
Sbjct: 211 VNADDALTMPIRGADKRCVSFGVNMGDYHLNRQ-QGE----TWLRV-KGEKV-------- 256

Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA-ALS-VLGLDIGVDVEALNSTIEILRT-- 254
                      L    MK+ G+HNY NA  A AL+  +G+          S+++ L T  
Sbjct: 257 -----------LNTKEMKLSGQHNYTNALAALALADAVGIP-------RASSLKALTTFT 298

Query: 255 -PPHRMQIVHRDIQGVTWVDDSKATNL---EATCTGLMDLKGHKCVILLGGQAK 304
             PHR Q+V     GV W++DSKATN+   EA   GL  + G    +LLGG  K
Sbjct: 299 GLPHRFQLVLEH-NGVRWINDSKATNVGSTEAALNGL-HVDG-TLHLLLGGDGK 349

Length = 438

>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  108 bits (272), Expect = 1e-26
 Identities = 95/310 (30%), Positives = 141/310 (45%), Gaps = 49/310 (15%)

Query: 18  LACLLQSGKRVMSELDFAAQVIP--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
           LA    +G  V  E++ A ++    R    LAVTGTNGK+T V  +  ML   G+ A   
Sbjct: 95  LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAV 154

Query: 76  GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS----VVLNLTPD 131
           GN+G P+ +A             + V  VE+SS+Q+     ++ P+VS     VLNL PD
Sbjct: 155 GNIGTPVLDAVRD-------PEGYDVLAVELSSFQL-----HWSPSVSPHSAAVLNLAPD 202

Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLL--PFGNQHLNEA--IKGHR---FNLA---- 180
           HL+ H +M+ YA  K  ++       +  +  P     + EA  ++G R   F L     
Sbjct: 203 HLDWHGSMEAYAAAKARIYEGTTVACVYNVADPATEDLVEEADVVEGARAIGFTLGTPGP 262

Query: 181 -WIGAFPGVKID----TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235
             +G   G+ +D     + +T++ E+  +  +        +    HN  NA  AA   L 
Sbjct: 263 SQLGVVDGILVDRAFVEDRQTSALELATLEDL--------RPAAPHNIANALAAA--ALA 312

Query: 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC 295
              GV   A+   +   R   HR++ V  D  GVTWVDDSKATN  A       L  +  
Sbjct: 313 RSFGVPPAAVRDGLRAFRPDAHRIEHVA-DADGVTWVDDSKATNPHAAAA---SLAAYPS 368

Query: 296 VILL-GGQAK 304
           V+ + GG AK
Sbjct: 369 VVWIAGGLAK 378

Length = 480

>gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  105 bits (264), Expect = 1e-25
 Identities = 84/297 (28%), Positives = 133/297 (44%), Gaps = 56/297 (18%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  + SE++   +  P   K+  VTG++GK+T  T + +ML   G + +VGGN+G PL
Sbjct: 99  EEGAYITSEMEEFIKYCPA--KVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTPL 156

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
               F  I     + K    V+E+SS+Q+   +    P V+VV NL+P+HL+ HK M+ Y
Sbjct: 157 ----FSNIEEIKEEDK---VVLELSSFQLMTMDV--SPEVAVVTNLSPNHLDVHKDMEEY 207

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-----A 197
              K ++F +     L +L   N+  N   K                   EAK      +
Sbjct: 208 IDAKKNIFKYQSENDLLVLNKDNEITNGMEK-------------------EAKGDVVKFS 248

Query: 198 SFEVPAVGVVSQ-----------LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEA 244
             E    G   +            +  ++K+ G HN  N  AA  A++    D  V +E+
Sbjct: 249 RKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVN---DD--VSIES 303

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
           +           HR + V R+I GV + +DS A++   T  GL   +  K VIL+ G
Sbjct: 304 MKKVATTFSGVEHRCEFV-REINGVKYYNDSIASSPTRTLAGLKAFE--KPVILIAG 357

Length = 458

>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  102 bits (256), Expect = 1e-24
 Identities = 81/300 (27%), Positives = 137/300 (45%), Gaps = 55/300 (18%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
           L +G  V+ +++  A  + + +  +A+TG+NGKSTV    G M    G++  VGGN+G P
Sbjct: 89  LAAGIPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVP 146

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
                    AL   +   ++ V+E+SS+Q+E  +       +  LNL+ DH++R++ M++
Sbjct: 147 ---------ALDLLEQDAELYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMED 196

Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
           Y   K  +F H    +L ++   ++                  +P    + +  T  F+ 
Sbjct: 197 YRQAKLRIFDH---AELAVVNRDDKQ----------------TYPDHA-ELQLVTFGFDQ 236

Query: 202 PAVGVVSQ-----LQLHNMKVM--------GRHNYHNAAVAALSVLGLDIGVDVEALNST 248
              G+        L  +   V+        GRHN  N     L VL L     V+     
Sbjct: 237 QDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVAN----VLVVLALLDAAGVD-YRKA 291

Query: 249 IEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAK 304
           ++ L++     HR Q+V  D  G+ WV+DSKATN+ +T   L  L+   K  +L+GG  K
Sbjct: 292 LDALKSYTGLTHRCQVV-ADNHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGK 350

Length = 438

>gnl|CDD|179872 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  100 bits (251), Expect = 7e-24
 Identities = 74/271 (27%), Positives = 116/271 (42%), Gaps = 46/271 (16%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
           + VTGT GKST    +  +L   G    + GN+G PL E       + + +P  +   +E
Sbjct: 118 VCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIGVPLLE-------VLAPQPAPEYWAIE 170

Query: 106 VSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH------MVNTKL 158
           +SSYQ  ++      P ++VVLNL P+HL+ H     Y   K  L +       ++N   
Sbjct: 171 LSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRPRIALLNAAD 230

Query: 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA----KTASFEVPAVGVVSQLQLHN 214
             L      L ++       + W     G  +  +     + A F+              
Sbjct: 231 PRL--AALQLPDS------EVVWFNHPDGWHVRGDVVYRGEQALFDTA-----------L 271

Query: 215 MKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ-IVHRDIQGVTW 271
           + + GRHN  N  A +AAL  L    G+D  AL       R  P+R+Q +  RD  G+T+
Sbjct: 272 VPLPGRHNRGNLCAVLAALEAL----GLDAVALAPAAAGFRPLPNRLQELGSRD--GITY 325

Query: 272 VDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302
           V+DS +T   A+   L    G +  +L+GG 
Sbjct: 326 VNDSISTTPHASLAALDCFAGRRVALLVGGH 356

Length = 468

>gnl|CDD|234662 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score = 99.5 bits (248), Expect = 2e-23
 Identities = 82/280 (29%), Positives = 124/280 (44%), Gaps = 57/280 (20%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
           LAVTGTNGK+T    +  M+   G  A   GN+G P+S A         ++P+  V V E
Sbjct: 124 LAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNIGVPVSAAL-------VAQPRIDVLVAE 176

Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
           +SS+Q+   +    P V VVLNL  DH++ H +M++YA  K    + ++   + ++   +
Sbjct: 177 LSSFQLHW-SPTLTPDVGVVLNLAEDHIDWHGSMRDYAADK----AKVLRGPVAVIGADD 231

Query: 166 QHL------NEAIKGHRFNLA-----WIGAFPGVKIDTE---------AKTASFEVPAVG 205
           +++       +      F +       +G   G  +D           A+  S   PA G
Sbjct: 232 EYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPA-G 290

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
           V+  L               AA A     G+       AL S+ E+     HR Q+V   
Sbjct: 291 VLDAL---------------AAAAVARSQGVAPEAIARAL-SSFEV---AGHRGQVVAEH 331

Query: 266 IQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAK 304
             GVTW+D+SKATN  A       L GH+ V+ + GGQ K
Sbjct: 332 -GGVTWIDNSKATNPHAADAA---LAGHESVVWVAGGQLK 367

Length = 473

>gnl|CDD|223841 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 93.1 bits (232), Expect = 3e-21
 Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 30/276 (10%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS----KP 97
           + K++A+TG+NGK+T    +  +L+  G      GN  N         I LP +      
Sbjct: 102 NAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNE--------IGLPLTLLRLPA 153

Query: 98  KFQVAVVEVS-SYQMEIPN--KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV 154
             + AV+E+  ++  EI    +   P ++V+ N+   HLE   + +  A  K  + + + 
Sbjct: 154 DTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLR 213

Query: 155 NTKLGLLPFGNQHL-NEAIKG-----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVS 208
              + +L   N  L N A K        F L   G F    I  + + +SF +   G  +
Sbjct: 214 PEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEA 273

Query: 209 QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268
           + +L    + GRHN  NA  AA   L L++G+D+E + + ++ L+    R++++     G
Sbjct: 274 EFEL---PLPGRHNVTNALAAAA--LALELGLDLEEIAAGLKELKPVKGRLEVILLAN-G 327

Query: 269 VTWVDDSKATNLEATCTG---LMDLKGHKCVILLGG 301
            T +DDS   N ++       L  L G K + +LG 
Sbjct: 328 KTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGD 363

Length = 451

>gnl|CDD|234660 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional

 Score = 92.1 bits (230), Expect = 6e-21
 Identities = 66/274 (24%), Positives = 105/274 (38%), Gaps = 48/274 (17%)

Query: 26  KRVMSELDFAAQV---IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN-- 80
           ++ ++ L  AA         +K++ VTGTNGK+T    + Q+L  LG +  + G LGN  
Sbjct: 77  RKALALL--AAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGI 134

Query: 81  -----------PLSEAAFHCIALPSSKPKFQVAVVEVSS--------YQMEIPNKYFCPT 121
                      P +      +A          A +EVSS          ++         
Sbjct: 135 GGELIPSGLTTPDALDLQRLLAELVDA-GVTYAAMEVSSHALDQGRVDGLKF-------D 186

Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLN-EAIKGHRFN-L 179
           V+V  NL+ DHL+ H TM++Y   K  LFS +    +         +N +   G R   L
Sbjct: 187 VAVFTNLSRDHLDYHGTMEDYLAAKARLFSELGLAAV---------INADDEVGRRLLAL 237

Query: 180 AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239
               A      D  A    +           ++    ++GR N  N   A  ++L L  G
Sbjct: 238 PDAYAVSMAGADLRATDVEYTDSGQTFTLVTEVE-SPLIGRFNVSNLLAALAALLAL--G 294

Query: 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
           V +E   + +  L+  P RM+ V      +  VD
Sbjct: 295 VPLEDALAALAKLQGVPGRMERVDAGQGPLVIVD 328

Length = 460

>gnl|CDD|233265 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase

 Score = 91.6 bits (228), Expect = 8e-21
 Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 36/254 (14%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLG--------IEAFVGGN--LGNPLSEAAFHCI 90
           + +K++ VTGTNGK+T  + + Q+L  LG        I   +GGN  + NP +      +
Sbjct: 83  KKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEAL 142

Query: 91  ALPSSKPKF-----QVAVVEVSSYQMEIPNKYFCPTVSVVL-NLTPDHLERHKTMKNYAL 144
            L S+  +      Q AV+EVSS+ +           + V  NL+ DHL+ H TM+NY  
Sbjct: 143 TLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRGVRFDAAVFTNLSRDHLDFHGTMENYFA 202

Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK--------- 195
            K  LF     T+LGL  F   +L++   G +F            I   A          
Sbjct: 203 AKASLF-----TELGLKRFAVINLDDEY-GAQFVKRLPKDITVSAITQPADGRAQDIKIT 256

Query: 196 --TASFEVPAVGVVSQLQLHNMKV--MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
               SFE       +     ++    +GR N +N   A  ++L L  G+D+E + + +E 
Sbjct: 257 DSGYSFEGQQFTFETPAGEGHLHTPLIGRFNVYNLLAALATLLHL-GGIDLEDIVAALEK 315

Query: 252 LRTPPHRMQIVHRD 265
            R  P RM++V   
Sbjct: 316 FRGVPGRMELVDGG 329

Most members of this family are EC 6.3.2.13, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase. An exception is Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is EC 6.3.2.7. The Mycobacteria, part of the closest neighboring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 464

>gnl|CDD|179086 PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score = 90.3 bits (224), Expect = 2e-20
 Identities = 69/267 (25%), Positives = 112/267 (41%), Gaps = 51/267 (19%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
           L +TG+ GK+T + F+  +L  LGI AF  GN+G P+ +                V VVE
Sbjct: 105 LGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIPILDGMQQP----------GVRVVE 154

Query: 106 VSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
           +SS+Q+ +    Y   +  ++LN++ +HL+ H  +  Y   K ++   + N         
Sbjct: 155 ISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLRNPD------- 207

Query: 165 NQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
                           W+G     G       +     +     +  L LH+     R+N
Sbjct: 208 --------------DLWVGDERSYGHSYLEYVQEIMRLLDKGSALKPLYLHD-----RYN 248

Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATN 279
           Y  A   A  V  +       +  S +E + T   PPHRM+ +     GV +++DSKAT 
Sbjct: 249 YCAAYALANEVFPI-------SEESFLEAVATFEKPPHRMEYLGEK-DGVHYINDSKATT 300

Query: 280 LEATCTGLMDLKGHKCVILLGGQAKEC 306
           + A    L+ +     VI LGG+ K C
Sbjct: 301 VSAVEKALLAVGNQVIVI-LGGRNKGC 326

Length = 418

>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 87.0 bits (216), Expect = 3e-19
 Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 40/252 (15%)

Query: 43  IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIAL--PSS----- 95
           +K++ VTGTNGK+T  + + Q+L  LG +  + G  G+ LS        L  P +     
Sbjct: 91  LKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQN 150

Query: 96  ------KPKFQVAVVEVSSYQMEIPNKYFCP-TVSVVLNLTPDHLERHKTMKNYALTKCH 148
                     ++AV+EVSS+ +           V V  NL+ DHL+ H TM+ Y   K  
Sbjct: 151 LLRDLLDRGAEIAVMEVSSHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAV 210

Query: 149 LFSHMVNTKLGLL----PFGNQHLNEA-----------IKGHRFNLAWIGAFPGVKIDTE 193
           LF  + ++   ++      G  +                   R +L + G      I+  
Sbjct: 211 LFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYGCDFKRPDLDYRG------IEES 264

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           +  + F     G + +     + + G  N +NA  A  + L L  GVD+E + + +E L+
Sbjct: 265 SSGSDFVFEPSGGIGEY---ELPLPGLFNVYNALAAVAAALAL--GVDLEDILAGLETLK 319

Query: 254 TPPHRMQIVHRD 265
             P RM++V+  
Sbjct: 320 PVPGRMELVNIG 331

Length = 475

>gnl|CDD|233291 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

 Score = 85.8 bits (213), Expect = 8e-19
 Identities = 66/295 (22%), Positives = 119/295 (40%), Gaps = 54/295 (18%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN----PLSEAAFHCIALPSSKP 97
           S K++ +TG++GK+T    +  +L+H        GN  N    PL+        L  +  
Sbjct: 73  SGKVIGITGSSGKTTTKEMLAAILSHKYKVVATPGNFNNEIGLPLT--------LLRAPG 124

Query: 98  KFQVAVVEVS-SYQMEIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152
               AV+E+  S+  EI   Y      P ++V+ N+ P HLE   +++  A  K  +   
Sbjct: 125 DHDYAVLEMGASHPGEI--AYLAEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQG 182

Query: 153 MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT------EAKTASFEVPAVGV 206
           +    + ++   +    +          +    P   I +      + + A     A+G 
Sbjct: 183 LKENGIAVINADDPAFLD----------FAKRLPNRNILSFGFEGGDFRAADISYSALGS 232

Query: 207 VS-QLQLHNMK------VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
            S  L     +      ++GRHN  NA  AA   L L++G+ +E +   +  L+    R 
Sbjct: 233 TSFTLVTPGGEFEVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEGLAELKLVKGRF 290

Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTG---LMDLKGHKCVIL-----LGGQAKEC 306
           +I  R   G+T +DD+   N ++       L    G K ++L     LG  ++E 
Sbjct: 291 EIQTR--NGLTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAELGEYSEEL 343

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 417

>gnl|CDD|179571 PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score = 79.4 bits (196), Expect = 1e-16
 Identities = 79/260 (30%), Positives = 109/260 (41%), Gaps = 51/260 (19%)

Query: 40  PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKF 99
           PR  + L VTGTNGK+T  + +  ML   G  + + GN+G+P+         L       
Sbjct: 116 PR--RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNIGSPV---------LDVLDEPA 164

Query: 100 QVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL 158
           ++  VE+SS+Q+   P+    P    VLN+  DHL+ H TM  YA  K    +  V   +
Sbjct: 165 ELLAVELSSFQLHWAPS--LRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALTGRVAV-V 221

Query: 159 GL-LPFGNQHLNEAIK----GHRFNLAWIGAF---PGVKID-------TEAKTASFEVPA 203
           GL        L+ A      G R      G      G  +D         A  AS  VP 
Sbjct: 222 GLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLRLAPVASIPVPG 281

Query: 204 -VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
            VGV+  L                A AAL+     +GV   A+   +   R   HR ++V
Sbjct: 282 PVGVLDAL----------------AAAALA---RAVGVPAGAIADALASFRVGRHRAEVV 322

Query: 263 HRDIQGVTWVDDSKATNLEA 282
                G+T+VDDSKATN  A
Sbjct: 323 AV-ADGITYVDDSKATNPHA 341

Length = 488

>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 66/253 (26%), Positives = 93/253 (36%), Gaps = 49/253 (19%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKP---- 97
            + ++AVTGTNGK++    + Q+L  LG      G LG  L       I    + P    
Sbjct: 111 QLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDG---RLIPGSLTTPDAII 167

Query: 98  -----------KFQVAVVEVSSYQMEIPNKYFCPTVSVVL--NLTPDHLERHKTMKNYAL 144
                            +E SS+ +E   +     ++V    NLT DHL+ H TM++Y  
Sbjct: 168 LHRILARMRAAGADAVAMEASSHGLEQ-GRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEE 226

Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA------WIGAFPG-VKIDTEAKTA 197
            K  LFS        L   G   +N         LA       +G  P     D +A   
Sbjct: 227 AKAALFSK-------LPGLGAAVINADDPAAARLLAALPRGLKVGYSPQNAGADVQA--R 277

Query: 198 SFEVPAVGVVSQLQLHN------MKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTI 249
                A G V  L   +       +++GR N  N     AAL  LGL +     AL    
Sbjct: 278 DLRATAHGQVFTLATPDGSYQLVTRLLGRFNVSNLLLVAAALKKLGLPLAQIARAL---- 333

Query: 250 EILRTPPHRMQIV 262
             +   P RM+ V
Sbjct: 334 AAVSPVPGRMERV 346

Length = 958

>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 60/285 (21%), Positives = 104/285 (36%), Gaps = 42/285 (14%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV---GGNLGN----PLSEAAFHCIALPS 94
           S+ ++A+TG+NGK+T    +  +L     E  V    GN  N    PL+        L  
Sbjct: 602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLT--------LLR 653

Query: 95  SKPKFQVAVVEV---SSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151
            + + + AV E+      ++        PTV++V N   +H E   +++  A  K  + +
Sbjct: 654 LRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIA 713

Query: 152 HMVNTKLGLLPFGNQHLNEAIKGH------RFNLAWIGAFPGVKIDT-----EAKTASFE 200
            +    + ++   + +     K        RF L         KI       EA     +
Sbjct: 714 ALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQ 773

Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
           V      +++ L    ++G HN  N  AA+A     G  +      L       +    R
Sbjct: 774 VVTPAGSAEVYL---PLIGEHNLRNALAAIACALAAGASLKQIRAGLER----FQPVAGR 826

Query: 259 MQIVHRDIQGVTWVDDSKATN---LEATCTGLMDLKGHKCVILLG 300
           MQ       G   +DD+   N   + A    L +L      ++LG
Sbjct: 827 MQRRRLS-CGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLG 870

Length = 958

>gnl|CDD|223844 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 52/251 (20%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +AV GT+GK+T  + +  +L   G++    +GG L N  + A      L S    F   V
Sbjct: 110 IAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKNFGTNAR-----LGSGDY-F---V 160

Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
            E           ++ P V++V N+  DHL+ +  ++         F H V      +PF
Sbjct: 161 AEADESDSSF--LHYNPRVAIVTNIEFDHLDYYGDLEAIK----QAFHHFVRN----VPF 210

Query: 164 GN--------QHLNEAIKG------HRFNLAWIGAFPGVKIDTEAKTASFEV----PAVG 205
                      +L E +          +       +    I  +    +F+V      +G
Sbjct: 211 YGRAVVCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELG 270

Query: 206 VVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
            V       + + GRHN  NA  A+A    LG+D     EAL S   + R    R ++  
Sbjct: 271 EV------KLPLPGRHNVLNALAAIAVARELGIDPEAIAEALASFQGVKR----RFELK- 319

Query: 264 RDIQGVTWVDD 274
            ++ GVT +DD
Sbjct: 320 GEVNGVTVIDD 330

Length = 459

>gnl|CDD|130153 TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 78/276 (28%), Positives = 119/276 (43%), Gaps = 49/276 (17%)

Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEAAFHCIALPSSKPKFQVA 102
           +LAV GT+GK+T  + +  +L   G++    +GG  GN      F   A     P F   
Sbjct: 104 VLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGN------FGVSARLGESPFF--- 154

Query: 103 VVEVSSYQMEIPNK-----YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157
           V+E   Y     +K     ++ P   V+ NL  DH +    +K  A+ +   F H+V T 
Sbjct: 155 VIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLK--AIQR--QFHHLVRTV 210

Query: 158 LG----LLPFGNQHLNEAI-KGHRFNLAWIGA---FPGVKIDTEAKTASFEV----PAVG 205
            G    L P  +Q L + + KG      + G    +   KI  +   + F+V      VG
Sbjct: 211 PGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADG--SHFDVLLDGEKVG 268

Query: 206 VVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
            V         ++GRHN HNA  A+AA   +G+ I    EAL S +   R    R+++  
Sbjct: 269 EV------KWSLVGRHNMHNALMAIAAARHVGVAIEDACEALGSFVNAKR----RLEL-K 317

Query: 264 RDIQGVTWVDD--SKATNLEATCTGLMDLKGHKCVI 297
            +  G+T  DD     T +EAT  GL    G   ++
Sbjct: 318 GEANGITVYDDFAHHPTAIEATLQGLRQKVGGARIL 353

Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 448

>gnl|CDD|237588 PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 70/263 (26%), Positives = 107/263 (40%), Gaps = 46/263 (17%)

Query: 26  KRVMSELDFAAQVIPR-SIKILAVTGTNGKSTVVTFVGQMLNHLGI-------------E 71
           K+ MS +       P+  +K+LA TGT GK+T   F   +L  L               E
Sbjct: 92  KKAMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGE 151

Query: 72  AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY---FCPTVSVVLNL 128
            F    L  P S   F  +A  +        ++EVSS    +   Y   F   V V LN+
Sbjct: 152 TFFKSALTTPESLDLFKMMA-EAVDNGMTHLIMEVSSQAYLVGRVYGLTF--DVGVFLNI 208

Query: 129 TPDHLE--RHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE-----AIKGHRFNLAW 181
           TPDH+    H T ++Y   K  L     N+K  ++     H +E       + H F    
Sbjct: 209 TPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTPQEHDF---- 261

Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH-NMKVMGRHNYHNAAVAALSVLGLDIGV 240
            G     +I   +   SFE        +L    +++++G+ N  NA  A L+ L L  G 
Sbjct: 262 YGIDSENQI-MASNAFSFEATG-----KLAGTYDIQLIGKFNQENAMAAGLACLRL--GA 313

Query: 241 DVEALNSTIEILRTP-PHRMQIV 262
            +E +   I   +TP P RM+++
Sbjct: 314 SLEDIQKGIA--QTPVPGRMEVL 334

Length = 481

>gnl|CDD|233264 TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 45/248 (18%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +AV GT+GK+T    +  +L   G++    VGG +       A     L S +      V
Sbjct: 102 IAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVK-----EAGTNARLGSGEY----LV 152

Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLP 162
            E         +    P V++V N+ PDHL+ +  + +         F   ++     LP
Sbjct: 153 AEADESDASFLH--LQPNVAIVTNIEPDHLDTYGSSFERLKAA----FEKFIHN----LP 202

Query: 163 FG--------NQHLNEAIKGHRFNLAWIGAFPGVK-----IDTEAKTASFEVPAVGVVSQ 209
           F         +  L E +              G        + +   A  +     V  +
Sbjct: 203 FYGLAVICADDPVLRELVPK-ATEQVITYGGSGEDADYRAENIQQSGAEGK---FSVRGK 258

Query: 210 LQLHN---MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
            +L+    + + GRHN  NA  A    + L++G+D EA+   +   +    R +I+  + 
Sbjct: 259 GKLYLEFTLNLPGRHNVLNALAAIA--VALELGIDFEAILRALANFQGVKRRFEIL-GEF 315

Query: 267 QGVTWVDD 274
            GV  +DD
Sbjct: 316 GGVLLIDD 323

This model describes the MurC protein in bacterial peptidoglycan (murein) biosynthesis. In a few species (Mycobacterium leprae, the Chlamydia), the amino acid may be L-serine or glycine instead of L-alanine. A related protein, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase (murein tripeptide ligase) is described by model TIGR01081 [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 448

>gnl|CDD|234757 PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional

 Score = 46.6 bits (112), Expect = 9e-06
 Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 48/220 (21%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +AV GT+GK+T  + +  +L   G++    +GG L    + A      L +S       V
Sbjct: 110 IAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAAGTNA-----RLGNSD----YFV 160

Query: 104 VEV----SSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159
            E      S+      K   P +++V N+  DHL+ +   ++        F    +    
Sbjct: 161 AEADESDRSF-----LKLH-PDIAIVTNIDADHLDYYGDFEDLKDA----FQEFAH---- 206

Query: 160 LLPFG--------NQHLNEAIKGHRFNLAWIG-----AFPGVKIDTEAKTASFEVPAVG- 205
            LPF         +  L E +      +   G      F    I  +     F+V   G 
Sbjct: 207 NLPFYGALVACGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGE 266

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
           V+    L    + GRHN  N A+AA++V  L++G+D EA+
Sbjct: 267 VLGDFTLP---LPGRHNVLN-ALAAIAV-ALELGIDDEAI 301

Length = 461

>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 30/247 (12%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AFVGGNLGN 80
              G R++   +  A+++   I IL V+G++GK+TV + +  +      + ++  G L  
Sbjct: 84  KSRGNRLVHRAELLAELMQEQISIL-VSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQ 142

Query: 81  PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
                    +   S   ++ VA  + S   +    K++ P  SV+ N+  +HL   +  +
Sbjct: 143 -------EGLNGYSGSSEYFVAEADESDGSL----KHYTPEFSVITNIDNEHLSNFEGDR 191

Query: 141 NYALTKCHLFSHMVNTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
              L     F+  V         G+   L   ++GH +  +       +    E   + F
Sbjct: 192 ELLLASIQDFARKVQQINKCFYNGDCPRLKGCLQGHSYGFSSSCDLHILSYYQEGWRSYF 251

Query: 200 EVPAVGVVSQ---LQLHNMKVMGRHNYHNAAVA---ALSVLGLDIGVDVEALNSTIEILR 253
               +GVV Q   L L     +G HN  NAA A   AL+ LG+D G    AL     + R
Sbjct: 252 SAKFLGVVYQDIELNL-----VGMHNVANAAAAMGIALT-LGIDEGAIRNALKGFSGVQR 305

Query: 254 TPPHRMQ 260
               R++
Sbjct: 306 ----RLE 308

Length = 809

>gnl|CDD|237026 PRK11930, PRK11930, putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 43/131 (32%)

Query: 43  IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV--------GGNLGNPLS----------- 83
           I ++ +TG+NGK    T V + L  L    +            +G PLS           
Sbjct: 107 IPVIGITGSNGK----TIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQLNEEHELG 162

Query: 84  --EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
             EA         S+P            +ME   K   PT+ ++ N+   H E  +++K 
Sbjct: 163 IFEAGI-------SQPG-----------EMEALQKIIKPTIGILTNIGGAHQENFRSIKQ 204

Query: 142 YALTKCHLFSH 152
             + K  LF  
Sbjct: 205 KIMEKLKLFKD 215

Length = 822

>gnl|CDD|217262 pfam02875, Mur_ligase_C, Mur ligase family, glutamate ligase domain

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 255 PPHRMQIVHRDIQGVTWVDDSKATN---LEATCTGLMDLKGHKCVILLGGQAKE 305
            P R+++V     GV  +DD  A N   +EA    L +L     +IL+ G   +
Sbjct: 1   VPGRLEVVGEG-NGVLVIDD-YAHNPDAMEAALRALRNLFPQGRLILVFGAGGD 52

This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesised by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	100.0
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	100.0
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
COG0773	459	MurC UDP-N-acetylmuramate-alanine ligase [Cell env	100.0
TIGR01081	448	mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl	100.0
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	100.0
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	100.0
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK10773	453	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	100.0
TIGR01143	417	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	100.0
PRK14093	479	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop	100.0
COG0770	451	MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce	100.0
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	100.0
PRK00139	460	murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d	100.0
TIGR01085	464	murE UDP-N-acetylmuramyl-tripeptide synthetase. A	100.0
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	100.0
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK11930	822	putative bifunctional UDP-N-acetylmuramoyl-tripept	100.0
PRK14022	481	UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l	100.0
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	100.0
TIGR01499	397	folC folylpolyglutamate synthase/dihydrofolate syn	100.0
TIGR02068	864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	100.0
COG0769	475	MurE UDP-N-acetylmuramyl tripeptide synthase [Cell	100.0
PLN02913	510	dihydrofolate synthetase	100.0
PRK10846	416	bifunctional folylpolyglutamate synthase/ dihydrof	100.0
COG0285	427	FolC Folylpolyglutamate synthase [Coenzyme metabol	100.0
PLN02881	530	tetrahydrofolylpolyglutamate synthase	100.0
PRK14016	727	cyanophycin synthetase; Provisional	100.0
PF08245	188	Mur_ligase_M: Mur ligase middle domain; InterPro:	100.0
KOG2525	496	consensus Folylpolyglutamate synthase [Coenzyme tr	99.96
PF02875	91	Mur_ligase_C: Mur ligase family, glutamate ligase	98.75
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.55
PRK09435	332	membrane ATPase/protein kinase; Provisional	92.64
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	92.6
TIGR03172	232	probable selenium-dependent hydroxylase accessory	92.12
PRK15453	290	phosphoribulokinase; Provisional	90.46
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	89.65
COG4240	300	Predicted kinase [General function prediction only	89.22
COG0132	223	BioD Dethiobiotin synthetase [Coenzyme metabolism]	88.77
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	88.68
PRK13869	405	plasmid-partitioning protein RepA; Provisional	88.36
PHA02519	387	plasmid partition protein SopA; Reviewed	88.2
COG0769	475	MurE UDP-N-acetylmuramyl tripeptide synthase [Cell	88.17
PRK13232	273	nifH nitrogenase reductase; Reviewed	88.06
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	87.85
PRK13705	388	plasmid-partitioning protein SopA; Provisional	87.58
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	87.52
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	87.27
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	86.92
COG2403	449	Predicted GTPase [General function prediction only	85.77
PRK13235	274	nifH nitrogenase reductase; Reviewed	85.74
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	85.41
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	85.36
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	85.33
PHA02518	211	ParA-like protein; Provisional	85.03
KOG1324	190	consensus Dihydrofolate reductase [Coenzyme transp	84.98
COG2894	272	MinD Septum formation inhibitor-activating ATPase	84.77
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	84.65
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	84.51
PRK10037	250	cell division protein; Provisional	84.25
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	84.15
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	84.01
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	83.86
cd02040	270	NifH NifH gene encodes component II (iron protein)	83.56
cd03116	159	MobB Molybdenum is an essential trace element in t	83.05
PRK05439	311	pantothenate kinase; Provisional	83.02
PRK00784	488	cobyric acid synthase; Provisional	82.58
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	82.57
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	82.5
PRK14974	336	cell division protein FtsY; Provisional	82.31
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	81.97
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	81.97
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	81.69
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	81.55
PRK06696	223	uridine kinase; Validated	81.55
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	80.92
TIGR00064	272	ftsY signal recognition particle-docking protein F	80.33
PRK07667	193	uridine kinase; Provisional	80.19
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	80.03

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=100.00  E-value=2.1e-53  Score=404.51  Aligned_cols=280  Identities=24%  Similarity=0.450  Sum_probs=236.5

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~   83 (306)
                      ++|+||+|+++||++.+|++++++++++.+.+++..  +.++|+||||||||||++|++++|+.+|.++.++||+|.|..
T Consensus        65 ~vv~sp~i~~~~p~~~~a~~~~i~i~~~~e~~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~~~  142 (433)
T TIGR01087        65 LVVKSPGIPPDHPLVQAAAKRGIPVVGDIELFLRLV--PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTPAL  142 (433)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHHHH
Confidence            578999999999999999999999999999998877  678999999999999999999999999999999999998854


Q ss_pred             hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (306)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~  163 (306)
                      ....        ..+.|++|+|+|+++++.... ++|+++|||||++||+|+|+|+|+|+++|.++++..++++.+|+|.
T Consensus       143 ~~~~--------~~~~~~~V~E~~~~~l~~~~~-~~p~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~n~  213 (433)
T TIGR01087       143 EVLD--------QEGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNA  213 (433)
T ss_pred             HHHh--------ccCCCEEEEEcChhHhcCCcc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence            3221        135689999999998885543 7999999999999999999999999999999999888889999999


Q ss_pred             CChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHH
Q 021862          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE  243 (306)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~  243 (306)
                      ||+.+..+.+..+.++++||...+..       ..+.....+..+....++++++|+||++|+++|+  ++|..+|++++
T Consensus       214 dd~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~~~  284 (433)
T TIGR01087       214 DDPRFARLAQKSKAQVIWFSVEKDAE-------RGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAI--ALAKSLGLNLE  284 (433)
T ss_pred             CCHHHHHhhhhcCceEEEEeCCccCC-------CceEEECCEEEEeccccccCCCcHHHHHHHHHHH--HHHHHcCCCHH
Confidence            99988777766666788888543211       0111111111111112478999999999999999  89999999999


Q ss_pred             HHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862          244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE  305 (306)
Q Consensus       244 ~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~  305 (306)
                      .|+++|++|++++||||++. ..+++.+|+|+++|||+|+..+++.++ +++++|+||+.+.
T Consensus       285 ~i~~~L~~f~g~~~R~e~v~-~~~g~~~idD~~atn~~a~~~al~~~~-~~ii~I~Gg~~~~  344 (433)
T TIGR01087       285 AILEALRSFKGLPHRLEYVG-QKNGVHFYNDSKATNVHATLAALSAFD-NPVILIVGGDDKG  344 (433)
T ss_pred             HHHHHHHhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCC
Confidence            99999999999999999996 457899999988999999999999996 4799999998764

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.9e-53  Score=396.21  Aligned_cols=282  Identities=27%  Similarity=0.450  Sum_probs=242.5

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~   83 (306)
                      ++|.||+||++||.+++|+..+.+++.+++.+++.. ...|+|+|||||||||||+|+++||+..|+++.++||+|.|.+
T Consensus        72 ~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l  150 (448)
T COG0771          72 LVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPAL  150 (448)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHH
Confidence            467899999999999999999999999999999876 4667999999999999999999999999999999999999998


Q ss_pred             hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (306)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~  163 (306)
                      ....       ...+.|+.|+|+|+.|++.... ++|++++||||++||+|||+|+|+|..+|.+++....+  ++|+|.
T Consensus       151 ~~~~-------~~~~~d~~VlElSSfQL~~~~~-~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~  220 (448)
T COG0771         151 ELLE-------QAEPADVYVLELSSFQLETTSS-LRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINA  220 (448)
T ss_pred             Hhhc-------ccCCCCEEEEEccccccccCcc-CCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEeC
Confidence            6653       2456789999999999998875 89999999999999999999999999999999997544  999999


Q ss_pred             CChhhHHHHhc-ccccEEEeccCCCee---eccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcC
Q 021862          164 GNQHLNEAIKG-HRFNLAWIGAFPGVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG  239 (306)
Q Consensus       164 dd~~~~~~~~~-~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg  239 (306)
                      ||+....+... ....+.+|+..+++.   +..+...   .+  .+ +.-+....++++|.||.+|+++|+  |+|..+|
T Consensus       221 dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~---~~--~~-~~i~~~~~l~l~G~hn~~N~lAa~--a~a~~~g  292 (448)
T COG0771         221 DDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL---VF--KG-EKLLPADELKLPGAHNLENALAAL--ALARALG  292 (448)
T ss_pred             CcHHHhhhhhhcccceeEEEEccccccccceeecchh---cc--cc-ccccchhhcCCcchhhHHHHHHHH--HHHHHcC
Confidence            99999988776 344566666554321   0011111   01  11 111122378999999999999999  9999999


Q ss_pred             CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCCC
Q 021862          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKEC  306 (306)
Q Consensus       240 ~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~~  306 (306)
                      ++++.|.++|..|+++++|||.+. +.+++.+|+|+.++|+++...+|+.++ +|+++|.||.+|++
T Consensus       293 v~~e~i~~~L~~F~gl~HR~e~v~-~~~gv~f~NDSKATN~~At~~AL~~~~-~~v~lI~GG~~Kg~  357 (448)
T COG0771         293 VPPEAILEALSSFTGLPHRLEFVG-EKDGVLFINDSKATNVDATLAALSGFD-GPVILIAGGDDKGA  357 (448)
T ss_pred             CCHHHHHHHHHhCCCCCcceEEEE-ecCCEEEecCCCCCCHHHHHHHHHcCC-CCEEEEECCCCCCC
Confidence            999999999999999999999999 699999999999999999999999999 79999999999985

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=3.5e-53  Score=403.21  Aligned_cols=284  Identities=27%  Similarity=0.394  Sum_probs=233.7

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~   83 (306)
                      ++|+||+|+++||++++|++++++++++++.+++.. .+.++|+||||||||||++|+++||+.+|.++.++||+|.|..
T Consensus        66 ~vV~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p~l  144 (454)
T PRK01368         66 KIVLSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKS-KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPAL  144 (454)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCceecHHHHHHHHh-cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHHHh
Confidence            578999999999999999999999999999988777 4668999999999999999999999999999999999998864


Q ss_pred             hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (306)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~  163 (306)
                      ..          ..+.+++|+|+|+++++.... ++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|.
T Consensus       145 ~~----------~~~~~~~VlE~ss~ql~~~~~-~~P~iavitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~  213 (454)
T PRK01368        145 QA----------KASKDGYVLELSSFQLDLVKT-FTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVINI  213 (454)
T ss_pred             cc----------cCCCCEEEEEcCchhhccccc-cCCCEEEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence            31          123478999999999876543 8999999999999999999999999999999999888889999999


Q ss_pred             CChhhHHHHhcc----cccEEEeccCCCeeeccccccceEEEec-CCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHc
Q 021862          164 GNQHLNEAIKGH----RFNLAWIGAFPGVKIDTEAKTASFEVPA-VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI  238 (306)
Q Consensus       164 dd~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~l  238 (306)
                      ||+.+..+....    ..++++|+...............+.+.. ..... ...+.++++|.||++|+++|+  +++..+
T Consensus       214 Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~hn~~Na~aAi--a~~~~l  290 (454)
T PRK01368        214 DNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISF-KLPFNKNLQGKHNCENIAASY--AVAKII  290 (454)
T ss_pred             CcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcce-EEEecCCCCchhhHHHHHHHH--HHHHHc
Confidence            999988775432    2367788754211000000000111111 01001 112356899999999999999  899999


Q ss_pred             CCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862          239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE  305 (306)
Q Consensus       239 g~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~  305 (306)
                      |++++.|+++|++|+++|||||++. ..+++.+|+|+++|||+|++.++++++  ++++|+||++|+
T Consensus       291 gi~~~~i~~~L~~F~~~~~Rle~v~-~~~gv~~i~DS~atN~~a~~~al~~~~--~i~lI~Gg~dk~  354 (454)
T PRK01368        291 GVEPKKILESISSFQSLPHRMQYIG-SINNISFYNDSKATNAISAVQSIKALD--NIYWLAGGIPKE  354 (454)
T ss_pred             CCCHHHHHHHHHhCCCCCcceEEEE-EECCeEEEECCCCCCHHHHHHHHHhcC--CeEEEecccCCC
Confidence            9999999999999999999999997 467899999999999999999999995  699999999875

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=2.1e-52  Score=397.72  Aligned_cols=279  Identities=28%  Similarity=0.424  Sum_probs=230.3

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~   83 (306)
                      ++|+||+|||+||++++|++++++++++++.+++..  +.++|+||||||||||++|++++|+..|.++.+.||+|.|..
T Consensus        71 ~vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~~~  148 (438)
T PRK04663         71 LVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAV--DKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVPAL  148 (438)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHHHH
Confidence            578999999999999999999999999999988777  568999999999999999999999999999999999998863


Q ss_pred             hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (306)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~  163 (306)
                      ...         ..+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++.   .+.+|+|.
T Consensus       149 ~~~---------~~~~~~~V~E~ss~~l~~~~-~~~p~iavitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~n~  215 (438)
T PRK04663        149 DLL---------EQDAELYVLELSSFQLETTS-SLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVVNR  215 (438)
T ss_pred             hhh---------cCCCCEEEEEcChhhhccCc-ccCCCEEEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEEeC
Confidence            211         23458999999999886443 489999999999999999999999999999999874   37999999


Q ss_pred             CChhhHHHHhcccccEEEeccCC-CeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 021862          164 GNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV  242 (306)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~  242 (306)
                      ||+.......  ..++++||... ++.... .....+.+...+.  .+..++++++|+||++|+++|+  ++|..+|+++
T Consensus       216 dd~~~~~~~~--~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~l~l~G~hNv~NalaAi--a~a~~lGi~~  288 (438)
T PRK04663        216 DDKQTYPDHA--ELQLVTFGFDQQDFGLAQ-HQGREWLADNGQP--VLASAELKLVGRHNVANVLVVL--ALLDAAGVDY  288 (438)
T ss_pred             CCHHHHhhhc--CCcEEEEecCCCCCCeEe-cCCeEEEEeCCce--eeehhhcCCcchhhHHHHHHHH--HHHHHcCCCH
Confidence            9998654432  34678888643 211110 0111222221111  1123578999999999999999  8999999999


Q ss_pred             HHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC-CCcEEEEECCCCCC
Q 021862          243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKE  305 (306)
Q Consensus       243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~-~~~~i~v~G~~~~~  305 (306)
                      ++|.++|++|++++||||++. ..+++.+|||+|++||+|+.+|++.+. ++|+++|+|||.++
T Consensus       289 ~~i~~~L~~f~g~~~R~e~v~-~~~g~~~idDs~~tn~~s~~~Al~~~~~~~~~i~IlGg~~~~  351 (438)
T PRK04663        289 RKALDALKSYTGLTHRCQVVA-DNHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGKG  351 (438)
T ss_pred             HHHHHHHHhCCCCCCceEEee-eeCCcEEEeCCCcCCHHHHHHHHHhcccCCcEEEEECCccCC
Confidence            999999999999999999996 357899999999999999999999985 46899999999775

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1e-51  Score=394.13  Aligned_cols=283  Identities=28%  Similarity=0.476  Sum_probs=232.5

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~   82 (306)
                      ++|+||+|+|+||+++.|++++++++++++.+++... .+.++|+||||||||||++|++++|+..|.++.+.||+|.|+
T Consensus        70 ~vv~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~GniG~~~  149 (445)
T PRK04308         70 ILALSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV  149 (445)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCccHHH
Confidence            5789999999999999999999999999999887762 146899999999999999999999999999988999999987


Q ss_pred             hhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEe
Q 021862           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (306)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n  162 (306)
                      .......     ...+.|++|+|+|+++++... .++|+++|||||++||+++|+|+|+|+++|.++++   +++.+|+|
T Consensus       150 ~~~~~~~-----~~~~~d~~VlE~~~~~l~~~~-~~~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~---~~~~~i~n  220 (445)
T PRK04308        150 LEAELQR-----EGKKADVWVLELSSFQLENTE-SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQVLN  220 (445)
T ss_pred             HHHHHhh-----cCCCCcEEEEEeChHHhCcCc-ccCCCEEEEecCChHHhcccCCHHHHHHHHHHHhc---CCCEEEEe
Confidence            6544211     123579999999999887654 48999999999999999999999999999999986   36899999


Q ss_pred             CCChhhHHHHhcccccEEEeccCCC--eeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCC
Q 021862          163 FGNQHLNEAIKGHRFNLAWIGAFPG--VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV  240 (306)
Q Consensus       163 ~dd~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~  240 (306)
                      .||+....+.+. ..++++|+...+  +.....  ...+.+.  +.. ....++++++|.||++|+++|+  ++|..+|+
T Consensus       221 ~dd~~~~~~~~~-~~~v~~~~~~~~~d~~~~~~--~~~~~~~--~~~-~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi  292 (445)
T PRK04308        221 ADDAFCRAMKRA-GREVKWFSLEHEADFWLERE--TGRLKQG--NED-LIATQDIPLQGLHNAANVMAAV--ALCEAVGL  292 (445)
T ss_pred             CCcHHHHHHhhc-CCcEEEecCCCCCceeEecc--CCEEEEc--Cce-eeehhccCCcChhhHHHHHHHH--HHHHHcCC
Confidence            999988777543 456788875422  111110  0112222  111 1112468999999999999999  89999999


Q ss_pred             CHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE  305 (306)
Q Consensus       241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~  305 (306)
                      +++.|.++|++|+++|||||++. ..+++.+|||+|+|||+|+..+++.++ +++++|+|||.++
T Consensus       293 ~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~iDDs~~~n~~s~~~al~~~~-~~~i~IlGg~~~~  355 (445)
T PRK04308        293 PREALLEHVKTFQGLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGKG  355 (445)
T ss_pred             CHHHHHHHHhhCCCCCCceEEEE-eeCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEeCCCCCC
Confidence            99999999999999999999996 457789999999999999999999995 4799999999654

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.3e-51  Score=393.75  Aligned_cols=280  Identities=26%  Similarity=0.393  Sum_probs=230.9

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~   83 (306)
                      ++|+||+|+++||++..|++++++++++++.+++..  +.++|+||||||||||++|+++||++.|+++.++|++|.|..
T Consensus        71 ~vV~sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~~  148 (448)
T PRK03803         71 EIIISPGLALDTPALRAAAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPAL  148 (448)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHHH
Confidence            578999999999999999999999999999988777  568999999999999999999999999999999999999874


Q ss_pred             hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (306)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~  163 (306)
                      ...         ..+.|++|+|+|+++++.... ++|+++|||||++||+++|+|+|+|+++|.++++.   .+.+|+|.
T Consensus       149 ~~~---------~~~~~~~V~E~ss~~l~~~~~-~~P~iaVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~n~  215 (448)
T PRK03803        149 DLL---------SDDPELYVLELSSFQLETTHS-LNAEVATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVFNR  215 (448)
T ss_pred             HHh---------cCCCCEEEEEcChhhhCcCcc-cCccEEEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEEeC
Confidence            322         124589999999999876554 79999999999999999999999999999999884   47899999


Q ss_pred             CChhhHHHHhcccccEEEeccCCC----eeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcC
Q 021862          164 GNQHLNEAIKGHRFNLAWIGAFPG----VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG  239 (306)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg  239 (306)
                      ||+.+..+.+. ..++++||...+    +.+... ....+.+. .+.. .+...+++++|+||++|+++|+  ++|..+|
T Consensus       216 dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~l~l~G~Hn~~NalaAi--a~a~~lg  289 (448)
T PRK03803        216 DDALTRPLVPD-NQPCLSFGLNAPDFDEWGLREG-DGETYLAH-GFER-LMPVRELKLRGSHNLANALAAL--ALGEAAG  289 (448)
T ss_pred             CCHHHHHHhhc-CCcEEEEeCCCCCcCceEEEec-CCeEEEEe-CCce-EEehhccCCCCHHHHHHHHHHH--HHHHHcC
Confidence            99988877643 346778875321    111100 11112221 1111 1122468899999999999999  8999999


Q ss_pred             CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEECCCCCC
Q 021862          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKE  305 (306)
Q Consensus       240 ~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G~~~~~  305 (306)
                      ++++.|.++|++|+++|||||++. ..+++.+|||+|+|||+|+..+++.++   ++|+++|+||+.|+
T Consensus       290 i~~~~i~~~L~~f~g~~~R~e~v~-~~~gv~~idDs~atN~~a~~~al~~l~~~~~~~iilI~Gg~~k~  357 (448)
T PRK03803        290 LPKEAMLEVLRTFTGLPHRCEWVR-EVAGVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGKG  357 (448)
T ss_pred             CCHHHHHHHHhhCCCCCCceEEEE-EeCCeEEEEcCCcCCHHHHHHHHHhhhhcCCCCEEEEECCCCCC
Confidence            999999999999999999999997 457789999999999999999999984   35899999998764

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=2.4e-51  Score=392.42  Aligned_cols=282  Identities=26%  Similarity=0.370  Sum_probs=233.1

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~   83 (306)
                      ++|+||+++++||++..|++.+++++++++.+.+..  +.++|+||||||||||++|++++|+..|.++.++||+|.|+.
T Consensus        80 lVV~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~--~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gniG~p~~  157 (458)
T PRK01710         80 VIFKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYC--PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTPLF  157 (458)
T ss_pred             EEEECCCCCCCchHHHHHHHcCCcEEechHHhhhhc--CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCccChhHH
Confidence            578999999999999999999999999999877665  568999999999999999999999999999988999999886


Q ss_pred             hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (306)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~  163 (306)
                      ....       ...+.|++|+|+|+++.....  ++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.
T Consensus       158 ~~~~-------~~~~~~~~VlE~~~~~~~~~~--~~PdiaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~n~  228 (458)
T PRK01710        158 SNIE-------EIKEEDKVVLELSSFQLMTMD--VSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVLNK  228 (458)
T ss_pred             HHHh-------hCCCCCEEEEEcCccccccCC--CCCCEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence            4321       122568999999998877654  6999999999999999999999999999999999888889999999


Q ss_pred             CChhhHHHHhcccccEEEeccCCCeeecccc-ccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 021862          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA-KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV  242 (306)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~  242 (306)
                      ||+.+..+.+....++++||...+... ... ....+.+.  +... ...++++++|+||++|+++|+  |+|..+ +++
T Consensus       229 Dd~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~~--~~~~-~~~~~l~l~G~hnv~NalaA~--a~a~~~-i~~  301 (458)
T PRK01710        229 DNEITNGMEKEAKGDVVKFSRKEKVYE-GAYLKNGKLYIR--GKEV-CKKDDIKLKGMHNVENLLAAF--CAVNDD-VSI  301 (458)
T ss_pred             CcHHHHHHHhhcCCcEEEEeCCCCCCC-ceEEeCCEEEEc--CceE-EEhhhcCCccHhHHHHHHHHH--HHHHhC-CCH
Confidence            999988776554456788886432100 000 01112222  1111 112478999999999999999  788877 999


Q ss_pred             HHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862          243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE  305 (306)
Q Consensus       243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~  305 (306)
                      +.|.++|++|+|++||||++. ..+++++|||+|++||.|+..+++.+++ ++++|+||.+++
T Consensus       302 ~~i~~~L~~f~~~~~R~e~~~-~~~g~~~i~Dsy~~np~s~~~al~~~~~-~~i~IlGg~~~~  362 (458)
T PRK01710        302 ESMKKVATTFSGVEHRCEFVR-EINGVKYYNDSIASSPTRTLAGLKAFEK-PVILIAGGYDKK  362 (458)
T ss_pred             HHHHHHHHhCCCCCcceEEEE-EECCEEEecccccCCHHHHHHHHHhCCC-CEEEEeCCcCCC
Confidence            999999999999999999986 3578999999999999999999999975 689999997764

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=4.4e-51  Score=392.77  Aligned_cols=279  Identities=25%  Similarity=0.349  Sum_probs=224.6

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCC-----CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL   78 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~   78 (306)
                      ++|+||+||++||++.+|++++++++++++.+++...     ...++|+||||||||||++|++++|+..|.++.+.||+
T Consensus        73 ~VV~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gni  152 (488)
T PRK03369         73 LVVTSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNI  152 (488)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCC
Confidence            5789999999999999999999999999998765541     13479999999999999999999999999998899999


Q ss_pred             ChhhhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCee
Q 021862           79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL  158 (306)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~  158 (306)
                      |.|+....         ..+.+++|+|+|+++++... .++|+++|||||++||+|+|||+|+|+++|.++++    ++.
T Consensus       153 G~p~~~~~---------~~~~~~~VlE~ss~ql~~~~-~~~P~vaVITNI~~DHLd~~gt~e~ya~aK~~I~~----~~~  218 (488)
T PRK03369        153 GSPVLDVL---------DEPAELLAVELSSFQLHWAP-SLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALT----GRV  218 (488)
T ss_pred             chHHHHhc---------cCCCCEEEEECChHHhCccc-ccCCCEEEEcCCCHHHhhhcCCHHHHHHHHHHHhc----CCE
Confidence            99874321         23678999999999987553 48999999999999999999999999999999987    378


Q ss_pred             EEEeCCChhhHHHHhccccc-EEEeccCC----CeeeccccccceEEEec-CCeeeEEEeeccCCCChhHHHHHHHHHHH
Q 021862          159 GLLPFGNQHLNEAIKGHRFN-LAWIGAFP----GVKIDTEAKTASFEVPA-VGVVSQLQLHNMKVMGRHNYHNAAVAALS  232 (306)
Q Consensus       159 ~V~n~dd~~~~~~~~~~~~~-~~~~g~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~G~~~~~N~l~A~~~  232 (306)
                      +|+|.||+....+.+..... ...++...    +..+. +.  ..+.... .+.. .....+++++|+||++|+++|+  
T Consensus       219 ~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~l~l~G~hnv~NalaAl--  292 (488)
T PRK03369        219 AVVGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVR-DG--HLVDRAFADDLR-LAPVASIPVPGPVGVLDALAAA--  292 (488)
T ss_pred             EEEECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEE-CC--EEEEeccCCccc-eechhhcCCCcHhHHHHHHHHH--
Confidence            99999999887776543322 22332211    11111 00  0001000 0100 0112467899999999999999  


Q ss_pred             HHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862          233 VLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE  305 (306)
Q Consensus       233 a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~  305 (306)
                      +++..+|+++++|.++|++|+|++||||++. ..+++.+|||+|+|||+|++.+++.++  ++++|+||+.|+
T Consensus       293 a~a~~lGi~~e~i~~~L~~f~~~~gR~E~v~-~~~gv~iIDDS~AhNp~s~~aal~~~~--~iilI~GG~~k~  362 (488)
T PRK03369        293 ALARAVGVPAGAIADALASFRVGRHRAEVVA-VADGITYVDDSKATNPHAARASILAYP--RVVWIAGGLLKG  362 (488)
T ss_pred             HHHHHcCCCHHHHHHHHHhCCCCCCccEEEE-cCCCEEEEECCCCCCHHHHHHHHHhCC--CeEEEecCcCCC
Confidence            8999999999999999999999999999997 467899999999999999999999885  699999999885

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.3e-50  Score=388.31  Aligned_cols=284  Identities=27%  Similarity=0.374  Sum_probs=227.9

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhh-----CCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQV-----IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL   78 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~   78 (306)
                      ++|+||+|+|+||++++|++++++++++++..++.     +....++|+||||||||||++||+++|+..|+++.+.||+
T Consensus        77 ~vV~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni  156 (473)
T PRK00141         77 LVVTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNI  156 (473)
T ss_pred             EEEeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccC
Confidence            57899999999999999999999999999976543     2123479999999999999999999999999999999999


Q ss_pred             ChhhhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCee
Q 021862           79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL  158 (306)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~  158 (306)
                      |.|++....       ...+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++    .+.
T Consensus       157 g~p~~~~l~-------~~~~~~~~V~E~ss~~l~~~~-~~~pdiaViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~~  224 (473)
T PRK00141        157 GVPVSAALV-------AQPRIDVLVAELSSFQLHWSP-TLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLR----GPV  224 (473)
T ss_pred             ChhHHHHHh-------cCCCCCEEEEecCCcccccCc-ccCCCEEEEcCCChhhccccCCHHHHHHHHHHHhh----CCE
Confidence            998874332       134578999999999876543 48999999999999999999999999999999986    368


Q ss_pred             EEEeCCChhhHHHHhcc-cccEEEeccCCCeeeccccccceEEEecCCeeeEEE-eeccCCCChhHHHHHHHHHHHHHHH
Q 021862          159 GLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGL  236 (306)
Q Consensus       159 ~V~n~dd~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~G~~~~~N~l~A~~~a~~~  236 (306)
                      +|+|.||+.+..+.+.. ..++++||...+...........+....++..+.+. ...++++|.||++|+++|+  +++.
T Consensus       225 ~vln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~--a~~~  302 (473)
T PRK00141        225 AVIGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAA--AVAR  302 (473)
T ss_pred             EEEECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHH--HHHH
Confidence            99999999988876543 236778885421100000001112111122222221 2367899999999999999  8999


Q ss_pred             HcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCC
Q 021862          237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK  304 (306)
Q Consensus       237 ~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~  304 (306)
                      .+|++.+.+.++|++|+|++||||++. ..++..+|||+|+|||+|++.+++.++  ++++|+||+.|
T Consensus       303 ~lgi~~~~i~~~l~~~~~~~~R~e~~~-~~~~~~iiDdsyahNp~s~~~~l~~l~--~~~~i~gG~~k  367 (473)
T PRK00141        303 SQGVAPEAIARALSSFEVAGHRGQVVA-EHGGVTWIDNSKATNPHAADAALAGHE--SVVWVAGGQLK  367 (473)
T ss_pred             HcCCCHHHHHHHHhhCCCCCCceEEEE-EeCCEEEEEcCCCCCHHHHHHHHHhcC--CEEEEecCccC
Confidence            999999999999999999888999996 356889999999999999999999996  68999999855

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=2e-50  Score=385.58  Aligned_cols=284  Identities=27%  Similarity=0.396  Sum_probs=233.2

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~   83 (306)
                      ++|+||+|+++||++.+|++++++++++.+.+++..  +.++|+||||||||||++|++++|+..|.++.+.|++|.|.+
T Consensus        71 ~vV~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~--~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig~p~~  148 (447)
T PRK02472         71 LMVKNPGIPYTNPMVEKALEKGIPIITEVELAYLIS--EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYPAS  148 (447)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccChhhH
Confidence            578999999999999999999999999999866655  568999999999999999999999999999999999998876


Q ss_pred             hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (306)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~  163 (306)
                      ....       ...+.|++|+|+++.++.... .++|+++|||||++||+++|||+|+|+++|.++++..++++.+|+|.
T Consensus       149 ~~~~-------~~~~~~~~V~E~ss~~~~~~~-~~~P~iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~n~  220 (447)
T PRK02472        149 EVAQ-------KATADDTLVMELSSFQLMGIE-TFRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINF  220 (447)
T ss_pred             HHHh-------cCCCCCEEEEEcCchhhCccc-ccCCCEEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence            4321       123468999999988766443 37999999999999999999999999999999999877789999999


Q ss_pred             CChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHH
Q 021862          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE  243 (306)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~  243 (306)
                      ||+.+..+++....++++|+...+...........+.+.  +.. .+...+++++|.||++|+++|+  +++..+|++++
T Consensus       221 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~l~G~hn~~Na~aAi--a~~~~lgi~~~  295 (447)
T PRK02472        221 DQEEVKELAKQTKATVVPFSTTEKVEDGAYIKDGALYFK--GEK-IMAADDIVLPGSHNLENALAAI--AAAKLLGVSNE  295 (447)
T ss_pred             CcHHHHHHHhhcCceEEEeecCCCCcCceEEECCEEEEC--Cce-EEehhhcCCCCHHHHHHHHHHH--HHHHHcCCCHH
Confidence            999888777655556778875432100000000112221  111 1112367899999999999999  89999999999


Q ss_pred             HHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCC
Q 021862          244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK  304 (306)
Q Consensus       244 ~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~  304 (306)
                      .|.++|++|++++||||++. ..+++.+|+|+|+|||+|+..+++.++ +++++|+|+.++
T Consensus       296 ~i~~~L~~f~~~~~R~e~~~-~~~g~~vi~D~~a~N~~s~~~al~~~~-~~ii~I~g~~~~  354 (447)
T PRK02472        296 AIREVLSTFSGVKHRLQYVG-TIDGRKFYNDSKATNILATQKALSGFN-QPVVLLAGGLDR  354 (447)
T ss_pred             HHHHHHHhCCCCCCcceEEE-EECCeEEEECCCCCCHHHHHHHHHhCC-CCEEEEECCCCC
Confidence            99999999999999999996 356789999999999999999999984 689999999865

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=4.2e-50  Score=384.47  Aligned_cols=286  Identities=27%  Similarity=0.376  Sum_probs=228.9

Q ss_pred             ecccccccccCch----HHHHHHhcCCeeeehHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCCccccc
Q 021862            4 LWLFLLEFQLKAT----GLACLLQSGKRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG   76 (306)
Q Consensus         4 ~~~~~~~~~~~~p----~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g   76 (306)
                      ++|+||+|+++||    ++..+++.+++++++++.+++...   .+.++|+||||||||||++||+++|++.|+++.++|
T Consensus        68 ~vv~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~g  147 (460)
T PRK01390         68 ALVLSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQMGG  147 (460)
T ss_pred             EEEECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcC
Confidence            5789999999988    999999999999999998877641   256899999999999999999999999999999999


Q ss_pred             CCChhhhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCC
Q 021862           77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT  156 (306)
Q Consensus        77 ~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~  156 (306)
                      |+|.|+.....        ..+.+++|+|+|+++++.... ++|+++|||||+.||+++|||+|+|+++|.++++..++ 
T Consensus       148 nig~~~~~~~~--------~~~~~~~V~E~~~~~ld~t~~-i~P~iaVITNI~~DHld~lgsle~ia~~K~~ii~~~~~-  217 (460)
T PRK01390        148 NIGTAVLTLEP--------PPAGRVYVLELSSYQIDLAPS-LDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQGP-  217 (460)
T ss_pred             ccchhhhhccc--------CCCCCEEEEEcCccccccccc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCC-
Confidence            99998764321        235689999999999876554 79999999999999999999999999999999997666 


Q ss_pred             eeEEEeCCChhhHHHHhcc---cccEEEeccCCCe--eeccccccceEEEecCCeeeEEEe-eccCCCChhHHHHHHHHH
Q 021862          157 KLGLLPFGNQHLNEAIKGH---RFNLAWIGAFPGV--KIDTEAKTASFEVPAVGVVSQLQL-HNMKVMGRHNYHNAAVAA  230 (306)
Q Consensus       157 ~~~V~n~dd~~~~~~~~~~---~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~G~~~~~N~l~A~  230 (306)
                      +.+|+|.||+.+..+.+..   ..++++|+.....  ..... ....+..........+.. ..++++|.||++|+++|+
T Consensus       218 ~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAi  296 (460)
T PRK01390        218 DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYAD-GGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAY  296 (460)
T ss_pred             CEEEEeCCCHHHHHHHHhccccCceEEEEeCCCCCcCceEEe-CCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHHH
Confidence            8999999999887775443   3456777654210  00000 011122211100001100 014789999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862          231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE  305 (306)
Q Consensus       231 ~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~  305 (306)
                        +++..+|++++.|.++|++|+++|||||++. ..+++.+|||+|+|||+|+.++|+.++  ++++|+||++++
T Consensus       297 --aa~~~lgi~~~~i~~gL~~~~~~~gR~e~i~-~~~g~~vIdDs~ahNp~s~~~aL~~~~--~i~~I~G~~d~~  366 (460)
T PRK01390        297 --AAARALGLSPEEIAAGLASFPGLAHRMEQVG-RRGGVLFVNDSKATNADAAAKALSSFD--RIYWIAGGKPKE  366 (460)
T ss_pred             --HHHHHcCCCHHHHHHHHHhCCCCCCceEEEe-eeCCcEEEEcCCCCCHHHHHHHHHhCC--CeEEEecCccCC
Confidence              8999999999999999999998999999996 356789999988999999999999875  789999999875

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=5.9e-50  Score=383.49  Aligned_cols=286  Identities=28%  Similarity=0.442  Sum_probs=230.0

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~   83 (306)
                      ++++||+++++||++++|++.+++++++++.+++.. .+.++|+||||||||||++||+++|+..|.++...||+|.|++
T Consensus        71 ~vv~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~-~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gniG~~~~  149 (459)
T PRK02705         71 LVVVSPGIPWDHPTLVELRERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYAAC  149 (459)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhh-cCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecccChhHH
Confidence            467899999999999999999999999999988776 4678999999999999999999999999999988999999887


Q ss_pred             hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (306)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~  163 (306)
                      ....  +.. ....+.|++|+|+|+++++.... ++|+++|||||++||+++|||+|+|+++|.++++.   ++.+|+|.
T Consensus       150 ~~~~--~~~-~~~~~~d~~VlE~~s~~l~~~~~-~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~~---~~~~Vln~  222 (459)
T PRK02705        150 ELAL--LRS-GKAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER---SEIRILNG  222 (459)
T ss_pred             HHHh--hhh-ccCCCCCEEEEEccccccccCcc-cCCCEEEEecCChhhhcccCCHHHHHHHHHHHhcc---CCEEEEEC
Confidence            5432  000 12346789999999998887765 89999999999999999999999999999999873   68999999


Q ss_pred             CChhhHHHHhcccccEEEeccCCC-eeec-ccc--ccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcC
Q 021862          164 GNQHLNEAIKGHRFNLAWIGAFPG-VKID-TEA--KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG  239 (306)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg  239 (306)
                      ||+.+..+.+... +.++|+...+ .... .+.  ......+...+.  .+...+++++|.||++|+++|+  +++..+|
T Consensus       223 dd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~l~G~hn~~NalaAi--a~a~~lg  297 (459)
T PRK02705        223 DDPYLRQHRSSWP-KGYWTSTQGKASLLGQADGWILEEGWVVERGEP--LFPLSALKMPGAHNLQNLLLAV--AAARLAG  297 (459)
T ss_pred             CCHHHHHHHhcCC-ceEEeccCCccccccccceeEecCCEEEECCcc--eeeHHHcCCccHHHHHHHHHHH--HHHHHcC
Confidence            9998887765432 3456654211 1000 000  000011111110  1111367899999999999999  8999999


Q ss_pred             CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCC
Q 021862          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK  304 (306)
Q Consensus       240 ~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~  304 (306)
                      ++++.|.++|++|++++||||++. ..+++.+|+|+++|||+|++.+++.+++ ++++|+|||.+
T Consensus       298 v~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~ii~Ds~a~N~~s~~~al~~l~~-~~i~IlGg~~~  360 (459)
T PRK02705        298 LSAEAIAEALRSFPGVPHRLERIG-TINGIDFINDSKATNYDAAEVGLKAVPG-PVILIAGGEAK  360 (459)
T ss_pred             CCHHHHHHHHHhCCCCCCceEEEE-eeCCcEEEEeCCCCCHHHHHHHHHhCCC-CeEEEecCccC
Confidence            999999999999999999999986 4567899999889999999999999974 78999999875

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=6.3e-50  Score=381.10  Aligned_cols=280  Identities=27%  Similarity=0.427  Sum_probs=228.7

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~   83 (306)
                      +.|+||+++++||++..|++++.+++++.+.+++..  +.++|+||||||||||++||++||+..|.++.++||+|.|..
T Consensus        68 ~vv~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p~~  145 (438)
T PRK03806         68 LIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLPAL  145 (438)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchhHH
Confidence            578999999999999999999999999998877666  568999999999999999999999999999999999998763


Q ss_pred             hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhhccccCCeeEEEe
Q 021862           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLP  162 (306)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~-gt~e~~~~~k~~i~~~~~~~~~~V~n  162 (306)
                      .. .        .++.+++|+|+|+++++... .++|+++|||||++||+|+| +|+|+|+++|.++++.   .+.+|+|
T Consensus       146 ~~-~--------~~~~~~~V~E~ss~~l~~~~-~~~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~n  212 (438)
T PRK03806        146 SL-L--------DQECELYVLELSSFQLETTS-SLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVN  212 (438)
T ss_pred             Hh-h--------ccCCCEEEEEccchhhccCc-ccCCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEEe
Confidence            21 1        23468999999999887554 37899999999999999999 6999999999999874   4789999


Q ss_pred             CCChhhHHHHhcccccEEEeccCC-CeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCC
Q 021862          163 FGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD  241 (306)
Q Consensus       163 ~dd~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~  241 (306)
                      .||+.+..+.+. ..++.+|+... ++..... ....+.+.. +.. .+..++++++|.||++|+++|+  ++|+.+|++
T Consensus       213 ~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~  286 (438)
T PRK03806        213 ADDALTMPIRGA-DKRCVSFGVNMGDYHLNRQ-QGETWLRVK-GEK-VLNTKEMKLSGQHNYTNALAAL--ALADAVGIP  286 (438)
T ss_pred             CCCHHHHHHhcC-CceEEEEecCCCceEEEec-CCeEEEEec-Cce-eeehhhcCCcccccHHHHHHHH--HHHHHcCCC
Confidence            999988775443 34567777532 2211110 111111111 111 1123478999999999999999  899999999


Q ss_pred             HHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC-CCcEEEEECCCCCC
Q 021862          242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKE  305 (306)
Q Consensus       242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~-~~~~i~v~G~~~~~  305 (306)
                      +++|+++|++|++++||||++. ..+++.+|+|+|+|||+|++++++.++ ++|+++|+|+++|.
T Consensus       287 ~~~i~~~L~~f~~~~gR~E~v~-~~~~~~~i~Ds~a~n~~a~~~al~~l~~~~~~i~IlG~~~k~  350 (438)
T PRK03806        287 RASSLKALTTFTGLPHRFQLVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKS  350 (438)
T ss_pred             HHHHHHHHHhCCCCCCeEEEEE-eeCCEEEEEcCCCCCHHHHHHHHHhCccCCcEEEEECCcCCC
Confidence            9999999999999999999996 456889999988999999999999996 46799999999774

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=6.3e-50  Score=382.92  Aligned_cols=283  Identities=24%  Similarity=0.316  Sum_probs=229.2

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHH-HHhhCCC---CCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCC
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDF-AAQVIPR---SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG   79 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~-~~~~~~~---~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g   79 (306)
                      ++|+||+|||+||+++.|++++++++++++. +.+....   ..++|+||||||||||++|+++||+..|.++.+.||+|
T Consensus        72 ~vV~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~GniG  151 (468)
T PRK04690         72 VVVKSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIG  151 (468)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCCC
Confidence            5789999999999999999999999999998 4443311   24799999999999999999999999999999999999


Q ss_pred             hhhhhhhhccccCCCCCCCCcEEEEEecccccccCCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCee
Q 021862           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL  158 (306)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~-~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~  158 (306)
                      .|+.....       ...+.+++|+|+|++++..... .++|+++|||||++||+++|+|+|+|.++|.++++... .+.
T Consensus       152 ~p~~~~~~-------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~-~~~  223 (468)
T PRK04690        152 VPLLEVLA-------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGR-PRI  223 (468)
T ss_pred             cchHHHhc-------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCC-CCe
Confidence            88854321       1235689999999998876543 37899999999999999999999999999999998654 368


Q ss_pred             EEEeCCChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHc
Q 021862          159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI  238 (306)
Q Consensus       159 ~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~l  238 (306)
                      +|+|.||+....+.. ...++++|+...+....     ..+.+.. +. ..+....++++|.||++|+++|+  +++..+
T Consensus       224 ~v~n~dd~~~~~~~~-~~~~v~~~~~~~~~~~~-----~~~~~~~-~~-~~~~~~~~~l~G~h~~~Na~~A~--a~~~~l  293 (468)
T PRK04690        224 ALLNAADPRLAALQL-PDSEVVWFNHPDGWHVR-----GDVVYRG-EQ-ALFDTALVPLPGRHNRGNLCAVL--AALEAL  293 (468)
T ss_pred             EEEeCccHHHHHHhc-CCCeEEEeeCCccceec-----ceEEEcC-Cc-eEEeeccccCccHhhHHHHHHHH--HHHHHc
Confidence            899999998766532 33467777753221111     1122221 11 11223467899999999999999  899999


Q ss_pred             CCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862          239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE  305 (306)
Q Consensus       239 g~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~  305 (306)
                      |++++.|.++|++|+++|||||++. +.+++.+|||+++|||+|+..+++.++++++++|+||++|+
T Consensus       294 gi~~~~i~~~l~~~~~~~gR~e~~~-~~~g~~iidDs~ahNp~a~~~al~~~~~~~i~~i~Gg~~k~  359 (468)
T PRK04690        294 GLDAVALAPAAAGFRPLPNRLQELG-SRDGITYVNDSISTTPHASLAALDCFAGRRVALLVGGHDRG  359 (468)
T ss_pred             CCCHHHHHHHHHhCCCCCCCcEEEE-ccCCeEEEEeCCCCCHHHHHHHHHhccCCcEEEEEcCCCCC
Confidence            9999999999999988999999996 45689999998899999999999999877899999997654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=2.1e-49  Score=381.60  Aligned_cols=287  Identities=30%  Similarity=0.414  Sum_probs=228.3

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCC--CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~   81 (306)
                      ++|++|+++|++|++..|++.+++++++++.+++...  ++.++|+||||||||||++||+++|+..|.++.+.||+|.|
T Consensus        81 ~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gnig~~  160 (480)
T PRK01438         81 LVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNIGTP  160 (480)
T ss_pred             EEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCccHH
Confidence            4679999999999999999999999999998776652  24579999999999999999999999999999889999988


Q ss_pred             hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEE
Q 021862           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (306)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~  161 (306)
                      +.....       ...++|++|+|+|+++++..+. ++|+++|||||+.||+++|||+|+|+++|.++++.  ..+.+|+
T Consensus       161 ~~~~~~-------~~~~~~~~V~E~ss~~l~~~~~-i~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~--~~~~~v~  230 (480)
T PRK01438        161 VLDAVR-------DPEGYDVLAVELSSFQLHWSPS-VSPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEG--TTVACVY  230 (480)
T ss_pred             HHHHHh-------cCCCCCEEEEEcChHHhCcCcc-cCCCEEEEecCChhhccccCCHHHHHHHHHHHHhC--CCceEEE
Confidence            764321       2346799999999999876653 78999999999999999999999999999999985  3478999


Q ss_pred             eCCChhhHHHHhcc----cccEEEeccCCC----eeeccccc-cceEEEecCCeeeEEE-eeccCCCChhHHHHHHHHHH
Q 021862          162 PFGNQHLNEAIKGH----RFNLAWIGAFPG----VKIDTEAK-TASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAAL  231 (306)
Q Consensus       162 n~dd~~~~~~~~~~----~~~~~~~g~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~G~~~~~N~l~A~~  231 (306)
                      |.||+.+..+.+..    ..++++|+...+    +....... ...+.....+..+.+. ..+++++|+||++|+++|+ 
T Consensus       231 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi-  309 (480)
T PRK01438        231 NVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAAA-  309 (480)
T ss_pred             eCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHHH-
Confidence            99999888776533    346677764321    11110000 0001111001111111 1257899999999999999 


Q ss_pred             HHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862          232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE  305 (306)
Q Consensus       232 ~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~  305 (306)
                       +++..+|++.+.|+++|++|+|++||||++. ..+++.+|||+|+|||+|++.+|+.++  ++++|+||+.++
T Consensus       310 -a~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~-~~~~~~iiDDs~ahNp~a~~aaL~~l~--~i~~I~gG~~~~  379 (480)
T PRK01438        310 -ALARSFGVPPAAVRDGLRAFRPDAHRIEHVA-DADGVTWVDDSKATNPHAAAASLAAYP--SVVWIAGGLAKG  379 (480)
T ss_pred             -HHHHHcCCCHHHHHHHHHhCCCCCCceEEEE-EECCEEEEecCccCCHHHHHHHHHhCC--CEEEEEecccCC
Confidence             8899999999999999999999899999996 356788999989999999999999994  789999987653

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=4.4e-49  Score=376.63  Aligned_cols=287  Identities=28%  Similarity=0.464  Sum_probs=234.0

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~   83 (306)
                      +++++++++++||++..|++++++++++++.+++.. + .++|+||||||||||++||.++|+..|.++++.|++|.|+.
T Consensus        71 ~vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~ig~~~~  148 (450)
T PRK14106         71 LVVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPLI  148 (450)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcccHHHH
Confidence            467899999999999999999999999999988877 3 78999999999999999999999999998889999998876


Q ss_pred             hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (306)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~  163 (306)
                      ....       ...+.+++|+|+|+++..... .++|+++|||||+.||+++|||+|+|+++|.++++..++.+.+++|.
T Consensus       149 ~~~~-------~~~~~~~~v~E~~~~~~~~~~-~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vln~  220 (450)
T PRK14106        149 DAVE-------EYGEDDIIVAEVSSFQLETIK-EFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNY  220 (450)
T ss_pred             HHHh-------cCCCCCEEEEEcChhhhcccc-ccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEEeC
Confidence            4422       123568999999987654333 37999999999999999999999999999999999888889999999


Q ss_pred             CChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEE-EeeccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 021862          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV  242 (306)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~  242 (306)
                      ||+....+.+..+.++++||.+.............+.+..++..... ...+++++|.||++|+++|+  +++..+|+++
T Consensus       221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAi--a~~~~lgi~~  298 (450)
T PRK14106        221 DDPRTRSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAAT--AAAYLLGISP  298 (450)
T ss_pred             CcHHHHHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHH--HHHHHcCCCH
Confidence            99988887776677788888643111000000112223322221111 12367899999999999999  8999999999


Q ss_pred             HHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCC
Q 021862          243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK  304 (306)
Q Consensus       243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~  304 (306)
                      +++.++|++|++.+||||++. ..++..+|+|+|+|||+|++++++.++. ++++|+|+|.+
T Consensus       299 ~~i~~~L~~~~~~~gR~e~i~-~~~~~~vi~D~~ahNP~s~~~~l~~l~~-~~i~v~g~~~~  358 (450)
T PRK14106        299 DVIANTLKTFKGVEHRIEFVA-EINGVKFINDSKGTNPDAAIKALEAYET-PIVLIAGGYDK  358 (450)
T ss_pred             HHHHHHHHhCCCCCcceEEEe-eECCEEEEeCCCccCHHHHHHHHHhCCC-CeEEEeCCcCC
Confidence            999999999999999999986 3456889999889999999999999964 68889998865

>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=4.3e-49  Score=363.47  Aligned_cols=278  Identities=21%  Similarity=0.288  Sum_probs=236.8

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcc--cccCCChh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNLGNP   81 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~--~~g~~g~~   81 (306)
                      .+|+|++++++|||++.|+++++|+++|.+++.+++ +....|+|+||+||||||.||+++|+++|++..  ++|.....
T Consensus        69 ~VV~s~Ai~~~NpEi~~A~e~~ipi~~r~e~Laelm-~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~~  147 (459)
T COG0773          69 VVVVSNAIKEDNPEIVAALERGIPVISRAEMLAELM-RFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKNF  147 (459)
T ss_pred             eEEEecccCCCCHHHHHHHHcCCCeEcHHHHHHHHH-hCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECcccccC
Confidence            478999999999999999999999999999999999 678899999999999999999999999999863  34433222


Q ss_pred             hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEE
Q 021862           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (306)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~  161 (306)
                      -....         ....+++|+|++|++..++.  ++|+++|+|||..||+|+|+++|++.+++..+++.++..|.+|+
T Consensus       148 g~na~---------~g~~~~fV~EADEsD~sFl~--~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v~  216 (459)
T COG0773         148 GTNAR---------LGSGDYFVAEADESDSSFLH--YNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAVV  216 (459)
T ss_pred             Ccccc---------cCCCceEEEEeccccccccc--CCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceEEE
Confidence            11111         22337899999999877765  79999999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHhc-ccccEEEeccCC--Cee---eccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHH
Q 021862          162 PFGNQHLNEAIKG-HRFNLAWIGAFP--GVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG  235 (306)
Q Consensus       162 n~dd~~~~~~~~~-~~~~~~~~g~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~  235 (306)
                      |.|||.++.+... +..++++||.+.  ++.   +..+..++.|++...++  .+..+.++++|+||+.|+++|+  |+|
T Consensus       217 ~~dd~~l~~l~~~~~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~--~~~~~~l~~pG~HNvlNAlaai--a~a  292 (459)
T COG0773         217 CGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGE--ELGEVKLPLPGRHNVLNALAAI--AVA  292 (459)
T ss_pred             ECCCHHHHHHHhcccCCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCc--eeEEEEEcCCchhhHHHHHHHH--HHH
Confidence            9999999998776 667789999885  432   23344445566655554  3345689999999999999999  999


Q ss_pred             HHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc----C-CCcEEEEE
Q 021862          236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----K-GHKCVILL  299 (306)
Q Consensus       236 ~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~----~-~~~~i~v~  299 (306)
                      ..+|++.+.|+++|++|+++++|||++. +.+++++|||| +|+|..+.++|+.+    + ++|+++||
T Consensus       293 ~~~Gi~~~~i~~aL~~F~GvkRRfe~~g-~~~~~~viDDY-aHHPtEI~aTL~aaR~~~~~~~rIvaif  359 (459)
T COG0773         293 RELGIDPEAIAEALASFQGVKRRFELKG-EVNGVTVIDDY-AHHPTEIKATLAAARQKVPGGKRIVAVF  359 (459)
T ss_pred             HHcCCCHHHHHHHHHhCCCcceeeEEee-eECCEEEEecC-CCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            9999999999999999999999999888 57889999996 99999999999976    3 37898887

>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase

Probab=100.00  E-value=6.5e-49  Score=374.90  Aligned_cols=283  Identities=22%  Similarity=0.286  Sum_probs=222.5

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcc-----cccCC
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-----VGGNL   78 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~-----~~g~~   78 (306)
                      ++|+||+|+|+||+++.|++++++++++++.+++...+..++|+||||||||||++|++++|++.|+++.     +.||+
T Consensus        63 ~vV~SpgI~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~gn~  142 (448)
T TIGR01081        63 LVVIGNAMKRGNPCVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGNF  142 (448)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccccC
Confidence            5789999999999999999999999999999877531233499999999999999999999999998863     56777


Q ss_pred             ChhhhhhhhccccCCCCCCCCcEEEEEecccccccC---Cc--eecccEEEEecCChhhhhccCCHHHHHHHHHHhhccc
Q 021862           79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP---NK--YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM  153 (306)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~---~~--~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~  153 (306)
                      |.|..   .         .+.|++|+|+|+++....   ..  .++|+++|||||++||+++|+|+|+|+++|.++++.+
T Consensus       143 G~~~~---~---------~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~~~  210 (448)
T TIGR01081       143 GVSAR---L---------GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRTV  210 (448)
T ss_pred             ccccc---c---------CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccCCHHHHHHHHHHHHHhC
Confidence            76652   1         135889999999876532   22  2689999999999999999999999999999999977


Q ss_pred             cCCeeEEEeCCChhhHHHHhc-ccccEEEeccCCCeeec-cccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHH
Q 021862          154 VNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKID-TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL  231 (306)
Q Consensus       154 ~~~~~~V~n~dd~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~  231 (306)
                      ++++.+|+|.||+.+..+... ...++.+|+...++... .......+.+...+..  ...++++++|.||++|+++|+ 
T Consensus       211 ~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~Na~~A~-  287 (448)
T TIGR01081       211 PGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADGSHFDVLLDGEK--VGEVKWSLVGRHNMHNALMAI-  287 (448)
T ss_pred             CCCCEEEEeCCCHHHHHHHHhccCCCeEEECCCCCEEEEEEecCCcEEEEEECCce--eEEEEecCCcHHHHHHHHHHH-
Confidence            777899999999988776542 22345666533222110 0011112333222211  112367899999999999999 


Q ss_pred             HHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCCCC
Q 021862          232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK  304 (306)
Q Consensus       232 ~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~~~  304 (306)
                       +++..+|++.+.+.++|++|++++||||++. ..+++.+|+|+ +|||+|++.++++++    ++|+++|+||.++
T Consensus       288 -a~~~~lgi~~~~i~~~L~~~~~~~~R~e~~~-~~~g~~ii~D~-ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~~  361 (448)
T TIGR01081       288 -AAARHVGVAIEDACEALGSFVNAKRRLELKG-EANGITVYDDF-AHHPTAIEATLQGLRQKVGGARILAVLEPRSN  361 (448)
T ss_pred             -HHHHHcCCCHHHHHHHHHhCCCCCcceEEEE-ecCCeEEEEeC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCcc
Confidence             8999999999999999999999999999996 35678999998 999999999999885    3478999997653

Alternate name: murein tripeptide ligase

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=100.00  E-value=4.4e-49  Score=377.35  Aligned_cols=283  Identities=19%  Similarity=0.264  Sum_probs=226.4

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCC--cccccCCChh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNP   81 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~--~~~~g~~g~~   81 (306)
                      ++|+||+|+++||++++|++++++++++++.+++.. .+.++|+||||||||||++|+++||+++|++  +.++|+.+++
T Consensus        69 ~vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~-~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~  147 (461)
T PRK00421         69 VVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELM-RFRTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAA  147 (461)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHH-ccCcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceeccC
Confidence            578999999999999999999999999999998877 3558999999999999999999999999965  4456654443


Q ss_pred             hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEE
Q 021862           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (306)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~  161 (306)
                      -....         ..+.+++|+|+|+++....  .++|+++|||||++||+++|+|+|+|+++|.+++..+++++.+|+
T Consensus       148 ~~~~~---------~~~~~~~V~E~ss~q~~~~--~~~p~vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~V~  216 (461)
T PRK00421        148 GTNAR---------LGNSDYFVAEADESDRSFL--KLHPDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVA  216 (461)
T ss_pred             Ccccc---------cCCCCEEEEECCCccchHh--hcCCCEEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence            22111         2356899999999876442  379999999999999999999999999999999988877899999


Q ss_pred             eCCChhhHHHHhcccccEEEeccCC--Ceeec---cccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHH
Q 021862          162 PFGNQHLNEAIKGHRFNLAWIGAFP--GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL  236 (306)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~g~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~  236 (306)
                      |.||+.+..+.+....++++|+..+  ++...   .......+.+...+..  +...+++++|.||++|+++|+  +++.
T Consensus       217 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~h~~~N~~aA~--a~~~  292 (461)
T PRK00421        217 CGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEV--LGDFTLPLPGRHNVLNALAAI--AVAL  292 (461)
T ss_pred             ECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCce--EEEEEecCCcHHHHHHHHHHH--HHHH
Confidence            9999998888766556778887643  22111   0111122333222211  123478899999999999999  8999


Q ss_pred             HcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEEC--CCCC
Q 021862          237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLG--GQAK  304 (306)
Q Consensus       237 ~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G--~~~~  304 (306)
                      .+|+++++|.++|++|++++||||++. ..+++.+|+|+ +|||.++..++++++    ++|+++|+|  |+.+
T Consensus       293 ~lgv~~~~i~~~l~~f~~~~~R~e~~~-~~~g~~~i~D~-aHnp~~~~a~~~al~~~~~~~~i~~v~gp~~~~r  364 (461)
T PRK00421        293 ELGIDDEAIREALATFKGVKRRFEEKG-EVGGVVLIDDY-AHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSR  364 (461)
T ss_pred             HcCCCHHHHHHHHHhCCCCCcccEEEE-ecCCcEEEEeC-CCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCcc
Confidence            999999999999999999999999996 45678999995 999999999888774    368999998  4443

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=100.00  E-value=1.1e-48  Score=373.38  Aligned_cols=283  Identities=19%  Similarity=0.291  Sum_probs=229.1

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCC--CcccccCCChh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI--EAFVGGNLGNP   81 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~--~~~~~g~~g~~   81 (306)
                      ++|+||+|+++||++++|++++++++++++.+++.. ++.++|+||||||||||++|+++||+..|+  ++.++|+.+.+
T Consensus        61 ~vV~spgi~~~~p~~~~a~~~~i~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~  139 (448)
T TIGR01082        61 VVVVSAAIKDDNPEIVEAKERGIPVIRRAEMLAELM-RFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVKEA  139 (448)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCceEeHHHHHHHHH-hcCcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcccccC
Confidence            578999999999999999999999999999998887 356899999999999999999999999997  55677887776


Q ss_pred             hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhh-ccCCHHHHHHHHHHhhccccCCeeEE
Q 021862           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE-RHKTMKNYALTKCHLFSHMVNTKLGL  160 (306)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~-~~gt~e~~~~~k~~i~~~~~~~~~~V  160 (306)
                      .....         ....|++|+|+|+++...  ..++|+++|||||++||+| +|+|+|+|+++|.++++.+++++.+|
T Consensus       140 ~~~~~---------~~~~~~~V~E~s~~q~~~--~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~~V  208 (448)
T TIGR01082       140 GTNAR---------LGSGEYLVAEADESDASF--LHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAV  208 (448)
T ss_pred             Ccccc---------cCCCCEEEEECCCccchH--hhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCEEE
Confidence            54322         123588999999988765  2479999999999999999 88999999999999999887789999


Q ss_pred             EeCCChhhHHHHhcccccEEEeccCC-C--eee---ccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHH
Q 021862          161 LPFGNQHLNEAIKGHRFNLAWIGAFP-G--VKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (306)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~g~~~-~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~  234 (306)
                      +|.||+.+..+.+....++++|+... +  +..   ........+.+...+..  ....+++++|.||++|+++|+  ++
T Consensus       209 ~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~l~G~hn~~N~~aA~--a~  284 (448)
T TIGR01082       209 ICADDPVLRELVPKATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKL--YLEFTLNLPGRHNVLNALAAI--AV  284 (448)
T ss_pred             EECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCce--EEEEEecCccHhHHHHHHHHH--HH
Confidence            99999998887765555778887642 1  111   11111122333222211  112467899999999999999  89


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECC--CCC
Q 021862          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG--QAK  304 (306)
Q Consensus       235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~--~~~  304 (306)
                      +..+|++++.|.++|++|++++||||++. ..+++.+|+|+ +|||.++.++++.++    ++|+++|+|+  +.|
T Consensus       285 ~~~lgi~~~~i~~~l~~f~~~~~R~e~~~-~~~gv~~i~D~-ahn~~~~~a~~~al~~~~~~~~ii~i~g~~~~~r  358 (448)
T TIGR01082       285 ALELGIDFEAILRALANFQGVKRRFEILG-EFGGVLLIDDY-AHHPTEIKATLKAARQGYPDKRIVVVFQPHRYSR  358 (448)
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCccceEEE-EeCCeEEEEcC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCCCcc
Confidence            99999999999999999999999999996 46779999995 999999999888763    3589999985  554

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=6.3e-48  Score=372.55  Aligned_cols=290  Identities=28%  Similarity=0.387  Sum_probs=228.0

Q ss_pred             ecccccccccCc----hHHHHHHhcCCeeeehHHHHHhhCC------CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcc
Q 021862            4 LWLFLLEFQLKA----TGLACLLQSGKRVMSELDFAAQVIP------RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF   73 (306)
Q Consensus         4 ~~~~~~~~~~~~----p~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~   73 (306)
                      ++|+||+|+++|    |++.+|++.+++++++++.+++.+.      .+.++|+||||||||||++||++||+..|++++
T Consensus        72 ~vv~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~  151 (498)
T PRK02006         72 LVALSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA  151 (498)
T ss_pred             EEEECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEE
Confidence            578999999998    9999999999999999998876651      124899999999999999999999999999998


Q ss_pred             cccCCChhhhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccc
Q 021862           74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM  153 (306)
Q Consensus        74 ~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~  153 (306)
                      +.|+++.+..........   .....+++|+|+|+++++.... ++|+++|||||++||+++|+|+|+|+++|.++++  
T Consensus       152 ~~Gni~~~~~~~~~~~~~---~~~~~~~~V~E~ss~~l~~~~~-~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~--  225 (498)
T PRK02006        152 VAGNISPAALDKLMEAID---AGALPDVWVLELSSFQLETTHT-LAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG--  225 (498)
T ss_pred             EECCCCHHHHHHHHHhhc---cCCCCcEEEEEccHHHhCcccc-cCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC--
Confidence            888888665433221111   1112478999999998765543 7999999999999999999999999999999987  


Q ss_pred             cCCeeEEEeCCChhhHHHHhcc-cccEEEeccCCC-----eeeccccccceEEEecCCee-------------------e
Q 021862          154 VNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPG-----VKIDTEAKTASFEVPAVGVV-------------------S  208 (306)
Q Consensus       154 ~~~~~~V~n~dd~~~~~~~~~~-~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~-------------------~  208 (306)
                       +++.+|+|.|||.+..+.... ..++++||...+     +...... ...+.+...+..                   .
T Consensus       226 -~~~~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (498)
T PRK02006        226 -PRTVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRDN-GMAWLVEAEDRDAADPAPSRRRKKDAAPPPDI  303 (498)
T ss_pred             -CCCEEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEecC-CeEEEEecCccccccccccccccccccccccc
Confidence             478999999999988876543 246788875421     1110000 000111100000                   0


Q ss_pred             ---E-EEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHH
Q 021862          209 ---Q-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATC  284 (306)
Q Consensus       209 ---~-~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~  284 (306)
                         . ....+++++|.||++|+++|+  ++++.+|++++.+.++|++|++++||||++. ..+++.+|||+|++||.|+.
T Consensus       304 ~~~~~~~~~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~-~~~g~~~idDs~~tn~~s~~  380 (498)
T PRK02006        304 RLKRLMPADALRIRGLHNAANALAAL--ALARAIGLPAAPLLHGLREYRGEPHRVELVA-TIDGVDYYDDSKGTNVGATV  380 (498)
T ss_pred             chhceeeHhhcCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHH
Confidence               1 111367899999999999999  8999999999999999999999999999996 35788999999999999999


Q ss_pred             HHHhccCCCcEEEEECCCCCC
Q 021862          285 TGLMDLKGHKCVILLGGQAKE  305 (306)
Q Consensus       285 ~al~~~~~~~~i~v~G~~~~~  305 (306)
                      ++++.++ +|+++|+||+.++
T Consensus       381 ~al~~~~-~~ii~IlGg~~~~  400 (498)
T PRK02006        381 AALDGLA-QRVVLIAGGDGKG  400 (498)
T ss_pred             HHHHhCC-CCEEEEEcCCCCC
Confidence            9999985 5799999998653

>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed

Probab=100.00  E-value=1.9e-48  Score=371.78  Aligned_cols=282  Identities=20%  Similarity=0.278  Sum_probs=213.0

Q ss_pred             cccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC----Ch
Q 021862            5 WLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----GN   80 (306)
Q Consensus         5 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~----g~   80 (306)
                      .|+++++++++|.+.  .++....|+.++..++.. .+.++|+||||||||||++||+++|+..|.++.+.|++    |.
T Consensus        65 vv~~~~~~~~~p~i~--v~d~~~al~~la~~~~~~-~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~t~gn~n~~~G~  141 (453)
T PRK10773         65 LLVSRPLDIDLPQLV--VKDTRLAFGQLAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGV  141 (453)
T ss_pred             EEEecCcCCCCCEEE--ECCHHHHHHHHHHHHHhc-CCCCEEEEcCCCchHHHHHHHHHHHHhcCcccccCccccCCccc
Confidence            455666655667543  223334566666555443 25689999999999999999999999999988777774    44


Q ss_pred             hhhhhhhccccCCCCCCCCcEEEEEecc---cccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCe
Q 021862           81 PLSEAAFHCIALPSSKPKFQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK  157 (306)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~V~E~~~---~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~  157 (306)
                      |.+...        ..++.+++|+|+|+   ++++.....++|+++|||||++||+|+|+|+|+|+++|.++++.++++|
T Consensus       142 ~~~~~~--------~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~g  213 (453)
T PRK10773        142 PLTLLR--------LTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENG  213 (453)
T ss_pred             ccHHhc--------CCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCCC
Confidence            433211        13467999999996   3444444458999999999999999999999999999999999888889


Q ss_pred             eEEEeCCChhhHHHHhcccc-cEEEeccCC----Ceee---ccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHH
Q 021862          158 LGLLPFGNQHLNEAIKGHRF-NLAWIGAFP----GVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA  229 (306)
Q Consensus       158 ~~V~n~dd~~~~~~~~~~~~-~~~~~g~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A  229 (306)
                      .+|+|.||+....+.+.... ++.+||...    ++..   ........+.+...+...   .++++++|+||++|+++|
T Consensus       214 ~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~---~~~l~l~G~hnv~NalaA  290 (453)
T PRK10773        214 IAIMNADSNDWLNWQSVIGSKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSV---DVLLPLPGRHNIANALAA  290 (453)
T ss_pred             EEEEECCcHhHHHHHHHhcCCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCceE---EEEecCCcHhHHHHHHHH
Confidence            99999999988776654433 567788532    2211   111112233333221112   247899999999999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC--CCcEEEEECCCC
Q 021862          230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQA  303 (306)
Q Consensus       230 ~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~--~~~~i~v~G~~~  303 (306)
                      +  +++..+|++++.|.++|++|+|++||||++. ..++.+||||+|||||+||+.+|+.++  ++|.++|+|+|.
T Consensus       291 i--a~a~~lGi~~~~i~~~L~~~~~~~gR~e~v~-~~~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~  363 (453)
T PRK10773        291 A--ALAMSVGATLDAVKAGLANLKAVPGRLFPIQ-LAEGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMA  363 (453)
T ss_pred             H--HHHHHcCCCHHHHHHHHHhCCCCCCceeEEE-CCCCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChh
Confidence            9  8999999999999999999999999999986 356789999999999999999999875  356799999974

>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

Probab=100.00  E-value=2.4e-47  Score=361.00  Aligned_cols=267  Identities=23%  Similarity=0.308  Sum_probs=206.9

Q ss_pred             HhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC----CChhhhhhhhccccCCCCCC
Q 021862           22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKP   97 (306)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~   97 (306)
                      +++...+|+.++..++.. .+.++|+||||||||||++|++++|++.|..+.+.|+    +|.|.+..        ....
T Consensus        54 V~d~~~al~~la~~~~~~-~~~~vI~VTGTnGKTTt~~ll~~iL~~~g~~~~t~gn~n~~ig~p~~~l--------~~~~  124 (417)
T TIGR01143        54 VDDTLEALQALASAKRAK-FSGKVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPLTLL--------RAPG  124 (417)
T ss_pred             ECCHHHHHHHHHHHHHhh-CCCCEEEEcCCCchhHHHHHHHHHHhccCcEecCCCcCCCccchhHHHh--------cCCC
Confidence            445556677777655544 2578999999999999999999999999987777777    34444322        1255


Q ss_pred             CCcEEEEEecc-cccc--cCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhc
Q 021862           98 KFQVAVVEVSS-YQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG  174 (306)
Q Consensus        98 ~~~~~V~E~~~-~~~~--~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~  174 (306)
                      +++++|+|+|+ +..+  .....++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|.||+....+.+.
T Consensus       125 ~~~~~VlE~g~s~~g~~~~~~~~~~p~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~  204 (417)
T TIGR01143       125 DHDYAVLEMGASHPGEIAYLAEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKR  204 (417)
T ss_pred             CCeEEEEEeCCCCCCcHHHHhCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHh
Confidence            78999999983 3322  22334799999999999999999999999999999999988888999999999988877665


Q ss_pred             cc-ccEEEeccCC-Ceee---cccccc-ceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 021862          175 HR-FNLAWIGAFP-GVKI---DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST  248 (306)
Q Consensus       175 ~~-~~~~~~g~~~-~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~  248 (306)
                      .. .++++||... ++..   ..+... ..+.+...+...   .++++++|+||++|+++|+  +++..+|+++++|.++
T Consensus       205 ~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~l~G~hn~~N~laAi--a~~~~lGi~~~~i~~~  279 (417)
T TIGR01143       205 LPNKAILSFGFEGGDFSAADISYSALGSTGFTLVAPGGEF---EVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEG  279 (417)
T ss_pred             ccCCcEEEECCCCCcEEEEEEEEcCCCCEEEEEEeCCceE---EEEccCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHH
Confidence            44 4678888543 2111   111111 233333222222   2478999999999999999  8999999999999999


Q ss_pred             hhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCC--CcEEEEECCCCC
Q 021862          249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAK  304 (306)
Q Consensus       249 l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~--~~~i~v~G~~~~  304 (306)
                      |++|+|++||||+.  ..+++.+|||+|||||+|++.+|+.++.  +|+++|+|+|.+
T Consensus       280 l~~~~~~~gR~e~~--~~~~~~vidDsya~np~s~~~al~~l~~~~~r~i~VlG~~~e  335 (417)
T TIGR01143       280 LAELKLVKGRFEIQ--TKNGLTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAE  335 (417)
T ss_pred             HHhCCCCCCceeEE--cCCCcEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEEcCchh
Confidence            99999999999954  5678999999889999999999999862  588999999853

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.

>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=1e-45  Score=355.24  Aligned_cols=271  Identities=18%  Similarity=0.183  Sum_probs=203.8

Q ss_pred             HhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhccccCCCCCCCCcE
Q 021862           22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQV  101 (306)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~  101 (306)
                      +++.+.+|+.++..++.. .+.++|+||||||||||++||.++|+..|.++.+.|++++.+.... . +..  ...+.++
T Consensus        88 V~d~~~al~~la~~~~~~-~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~n~~iG~p~-~-l~~--~~~~~~~  162 (479)
T PRK14093         88 VDDVLAALRDLGRAARAR-LEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFNNHWGVPL-S-LAR--CPADARF  162 (479)
T ss_pred             ECCHHHHHHHHHHHHHHh-cCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccCCCccchhH-H-HHc--CCCCCcE
Confidence            344445566666544444 4778999999999999999999999999988877776543322110 0 011  1356799


Q ss_pred             EEEEecc-cccc--cCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhccc--
Q 021862          102 AVVEVSS-YQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR--  176 (306)
Q Consensus       102 ~V~E~~~-~~~~--~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~--  176 (306)
                      +|+|+|+ +..+  .....++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||....+.+...  
T Consensus       163 ~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~l~~~~~~~  242 (479)
T PRK14093        163 AVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAASARAA  242 (479)
T ss_pred             EEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHHHHHHhhhc
Confidence            9999994 4333  2333579999999999999999999999999999999998878899999999999887765432  


Q ss_pred             --ccEEEeccCCC--eeec---cccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 021862          177 --FNLAWIGAFPG--VKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI  249 (306)
Q Consensus       177 --~~~~~~g~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l  249 (306)
                        .++++||...+  +...   .......+.+...+...   .++++++|.||++|+++|+  +++..+|++.++|.++|
T Consensus       243 ~~~~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~l  317 (479)
T PRK14093        243 GIARIVSFGADEKADARLLDVALHADCSAVHADILGHDV---TYKLGMPGRHIAMNSLAVL--AAAELAGADLALAALAL  317 (479)
T ss_pred             cCCcEEEEeCCCCccEEEEEEEEcCCceEEEEEECCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHH
Confidence              25788885432  2111   01111223332222222   2478999999999999999  89999999999999999


Q ss_pred             hcCCCCCCeeeEEeec--cCCEEEEEcCCCCcHHHHHHHHhccC------CCcEEEEECCC
Q 021862          250 EILRTPPHRMQIVHRD--IQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQ  302 (306)
Q Consensus       250 ~~~~~~~gR~e~~~~~--~~~~~ii~D~~~~n~~s~~~al~~~~------~~~~i~v~G~~  302 (306)
                      ++|+|++||+|.+..+  .++..||||+|||||+||+++|+.++      ++|+|+|||+|
T Consensus       318 ~~~~~~~gR~~~~r~~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m  378 (479)
T PRK14093        318 SQVQPAAGRGVRHTLEVGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDM  378 (479)
T ss_pred             HhCCCcCCcceEEEeecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECCh
Confidence            9999999999987321  34589999999999999999999874      35899999997

>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=9.8e-46  Score=347.51  Aligned_cols=266  Identities=24%  Similarity=0.334  Sum_probs=216.1

Q ss_pred             hcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC----ChhhhhhhhccccCCCCCCC
Q 021862           23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----GNPLSEAAFHCIALPSSKPK   98 (306)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~----g~~~~~~~~~~~~~~~~~~~   98 (306)
                      .+.+.+|+.++..++.. .+.++|+||||+|||||+.|++++|+..|....+.||+    |.|++....        ..+
T Consensus        84 ~d~~~al~~la~~~~~~-~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~--------~~~  154 (451)
T COG0770          84 LDTLEALGKLAKAYRQK-FNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRL--------PAD  154 (451)
T ss_pred             HHHHHHHHHHHHHHHHh-cCCcEEEEeCCCCcHHHHHHHHHHHhhcCeEecCCCccCccccchhHHHhC--------CCc
Confidence            33444666777666555 48899999999999999999999999998888777775    556554443        456


Q ss_pred             CcEEEEEecc---cccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhcc
Q 021862           99 FQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH  175 (306)
Q Consensus        99 ~~~~V~E~~~---~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~  175 (306)
                      .|++|+|+|+   |++..+..+.+|++++||||+.+|+++|||.|.++++|.+++..++++|++|+|.|++.........
T Consensus       155 ~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~  234 (451)
T COG0770         155 TEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKI  234 (451)
T ss_pred             ccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHHhhc
Confidence            8999999995   5677777778999999999999999999999999999999999999999999999999977776654


Q ss_pred             -cccEEEeccCC--Cee---eccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 021862          176 -RFNLAWIGAFP--GVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI  249 (306)
Q Consensus       176 -~~~~~~~g~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l  249 (306)
                       ..++++||...  +..   +..+.....|++...+.+..   +.++++|+||+.|+++|+  ++|+.+|++.++|+++|
T Consensus       235 ~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~---~~l~~~G~hn~~NalaA~--a~a~~lG~~~e~i~~~L  309 (451)
T COG0770         235 GNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAE---FELPLPGRHNVTNALAAA--ALALELGLDLEEIAAGL  309 (451)
T ss_pred             CCCcEEEEcCCCCCceeeEEEEEcCCceEEEEEecCceEE---EEecCCcHhHHHHHHHHH--HHHHHcCCCHHHHHHHH
Confidence             56789998652  221   12222224455544443333   489999999999999999  89999999999999999


Q ss_pred             hcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc---CCCcEEEEECCCC
Q 021862          250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQA  303 (306)
Q Consensus       250 ~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~---~~~~~i~v~G~~~  303 (306)
                      +.+++++||+|.+. ..++.++|||+||.||+||..+++.+   +.++.++|+|+|.
T Consensus       310 ~~~~~~~gR~~~~~-~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~  365 (451)
T COG0770         310 KELKPVKGRLEVIL-LANGKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDML  365 (451)
T ss_pred             HhcCCCCccceeEe-cCCCcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChh
Confidence            99999999999444 57889999999999999999999976   4444499999985

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=4.3e-45  Score=342.26  Aligned_cols=255  Identities=26%  Similarity=0.379  Sum_probs=207.1

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~   83 (306)
                      ++|+||+|+++||++.+|++    ++++++.+++..   .++|+||||||||||++|++++|+++|..  ..||+|.|++
T Consensus        57 ~vv~sp~i~~~~~~~~~a~~----i~~~~e~~~~~~---~~~i~ITGT~GKTTTt~ml~~iL~~~g~~--~~gniG~p~~  127 (401)
T PRK03815         57 LEIPSPGIPPSHPLIQKAKN----LISEYDYFYDVM---PFSIWISGTNGKTTTTQMTTHLLEDFGAV--SGGNIGTPLA  127 (401)
T ss_pred             EEEECCCCCCCCHHHHHHHH----HhhHHHHHHHhc---CCEEEEECCCcHHHHHHHHHHHHHHCCCc--EEEEecHhHH
Confidence            46899999999999999988    689999887655   24899999999999999999999999843  4789998876


Q ss_pred             hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (306)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~  163 (306)
                      .  .        ..+.|++|+|+++.+++... .++|+++|||||++||+|+|+|+|+|.++|.++++.+++++.+|+|.
T Consensus       128 ~--~--------~~~~~~~V~E~ss~~~~~~~-~~~p~iavitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n~  196 (401)
T PRK03815        128 E--L--------DKNAKIWVLETSSFTLHYTN-KAKPNIYLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILPK  196 (401)
T ss_pred             h--c--------CCCCCEEEEECChHHhhCCc-cCCCcEEEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEec
Confidence            4  2        22458999999988765444 37999999999999999999999999999999999988899999999


Q ss_pred             CChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHH
Q 021862          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE  243 (306)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~  243 (306)
                      ||+...     ...++++||...+.      . ..+.+..         ..+.+.+. +++|+++|+  +++..+|+  +
T Consensus       197 dd~~~~-----~~~~~~~fg~~~~~------~-~~~~~~~---------~~~~~~~~-~~~NalaA~--a~a~~~G~--~  250 (401)
T PRK03815        197 KFKNTP-----TKAQKIFYEDEEDL------A-EKFGIDS---------EKINFKGP-FLLDALLAL--AVYKILFD--E  250 (401)
T ss_pred             cccccc-----cCCcEEEEecCCcc------c-cceeEeh---------HhcCCchH-HHHHHHHHH--HHHHHhCc--H
Confidence            998642     12456777732111      0 0111111         12334455 499999999  89999994  5


Q ss_pred             HHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862          244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE  305 (306)
Q Consensus       244 ~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~  305 (306)
                      .+.++|++|+|+++|||++. ..+++.+|||+|++||+|+.+++++++++|+++|+||.+|+
T Consensus       251 ~~~~~L~~f~~~~~R~e~~~-~~~gv~~idDs~~tn~~a~~~al~~~~~~~ii~IlGG~~k~  311 (401)
T PRK03815        251 LDYERLNAFKIGKHKLEEFR-DKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGDDKG  311 (401)
T ss_pred             HHHHHHHhCCCCCceEEEEE-EECCEEEEECCCCCCHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            56678999999999999996 46789999999999999999999999766889999998764

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=100.00  E-value=8.3e-45  Score=368.38  Aligned_cols=275  Identities=15%  Similarity=0.204  Sum_probs=218.7

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCC--cccccCCChh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNP   81 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~--~~~~g~~g~~   81 (306)
                      ++|+||+|+++||+++.|++++++++++++.+++.. +..++|+||||||||||+.|+.++|+.+|.+  +.++|+.|.+
T Consensus        66 ~vV~SpgI~~~~p~~~~a~~~gi~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~gG~~g~~  144 (809)
T PRK14573         66 VVVYSSSISKDNVEYLSAKSRGNRLVHRAELLAELM-QEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQEG  144 (809)
T ss_pred             EEEECCCcCCCCHHHHHHHHCCCcEEeHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCccccc
Confidence            578999999999999999999999999999998887 4558999999999999999999999999986  3567777765


Q ss_pred             hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhhccccCCeeEE
Q 021862           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL  160 (306)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~-gt~e~~~~~k~~i~~~~~~~~~~V  160 (306)
                      +...          ..+.|++|+|+|+++.. .. .++|+++|||||++||+|+| +|+|+|+++|..+++.+++++.+|
T Consensus       145 ~~~~----------~~~~d~~V~E~ss~~~~-~~-~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V  212 (809)
T PRK14573        145 LNGY----------SGSSEYFVAEADESDGS-LK-HYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCF  212 (809)
T ss_pred             cccc----------cCCCCEEEEECCCCcch-hh-eeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            5421          12468999999998633 22 48999999999999999998 799999999999988777789999


Q ss_pred             EeCCChhhHHHHhcccccEEEeccCC--Cee---eccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHH
Q 021862          161 LPFGNQHLNEAIKGHRFNLAWIGAFP--GVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG  235 (306)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~g~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~  235 (306)
                      +|.||+......     +..+|+.+.  ++.   +..+.....+.+...+.  .+...+++++|+||++|+++|+  +++
T Consensus       213 ~N~Dd~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~--~~~~~~l~l~G~hn~~Na~aAi--a~~  283 (809)
T PRK14573        213 YNGDCPRLKGCL-----QGHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGV--VYQDIELNLVGMHNVANAAAAM--GIA  283 (809)
T ss_pred             EeCCCHHHHhhc-----ccEEEccCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEeccccHhhHHHHHHHH--HHH
Confidence            999999765432     124566432  211   11111111233322221  1123477899999999999999  899


Q ss_pred             HHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCC
Q 021862          236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQ  302 (306)
Q Consensus       236 ~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~  302 (306)
                      ..+|++.+.|.++|++|++++||||++. ..+++.+|+|+ ||||+|++++++.++    ++|+++|+++.
T Consensus       284 ~~lgi~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~i~D~-ahnP~~~~a~l~~l~~~~~~~rli~vf~~~  352 (809)
T PRK14573        284 LTLGIDEGAIRNALKGFSGVQRRLERKN-SSETFLFLEDY-AHHPSEISCTLRAVRDAVGLRRIIAICQPH  352 (809)
T ss_pred             HHcCCCHHHHHHHHHhCCCCCCCCEEEe-ccCCcEEEEEC-CCCHHHHHHHHHHHHhhcCCCEEEEEEcCC
Confidence            9999999999999999999999999996 45678899994 999999999999873    46899999754

>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional

Probab=100.00  E-value=3e-44  Score=343.66  Aligned_cols=264  Identities=25%  Similarity=0.310  Sum_probs=199.5

Q ss_pred             hcCCeeeehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhcc-ccCC-------
Q 021862           23 QSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-------   93 (306)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~-------   93 (306)
                      ++...+|++++..++..+ ++.++|+||||||||||++|++++|++.|.++++.||.++++....... ..++       
T Consensus        74 ~d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~i~~~~~~~~~~t~~~~~~~~  153 (460)
T PRK00139         74 PDLRKALALLAAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGIGGELIPSGLTTPDALDLQR  153 (460)
T ss_pred             CCHHHHHHHHHHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccccCCeecccCCCCcCHHHHHH
Confidence            344455666665544332 3678999999999999999999999999999999998877654321100 0111       


Q ss_pred             ----CCCCCCcEEEEEeccccccc--CCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChh
Q 021862           94 ----SSKPKFQVAVVEVSSYQMEI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQH  167 (306)
Q Consensus        94 ----~~~~~~~~~V~E~~~~~~~~--~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~  167 (306)
                          ....++|++|+|+|+++++.  +.. ++|+++|||||+.||+++|||+|+|+++|.++++..  .+.+|+|.||+.
T Consensus       154 ~l~~~~~~~~~~~VlE~~s~~~~~~~l~~-~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~--~~~~v~n~dd~~  230 (460)
T PRK00139        154 LLAELVDAGVTYAAMEVSSHALDQGRVDG-LKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSEL--GLAAVINADDEV  230 (460)
T ss_pred             HHHHHHHCCCCEEEEEcchhhHhhchhcC-CcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcC--CCeEEEEcCcHh
Confidence                01457899999999776542  332 799999999999999999999999999999999863  248999999998


Q ss_pred             hHHHHhcccccEEEeccC-CCeeeccccccceEEEecCCeeeEEE-eeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHH
Q 021862          168 LNEAIKGHRFNLAWIGAF-PGVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL  245 (306)
Q Consensus       168 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i  245 (306)
                      +..+...    +.+|+.. .+..+    ....+.....+..+.+. .+.++++|+||++|+++|+  +++..+|+++++|
T Consensus       231 ~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~~~~i  300 (460)
T PRK00139        231 GRRLLAL----PDAYAVSMAGADL----RATDVEYTDSGQTFTLVTEVESPLIGRFNVSNLLAAL--AALLALGVPLEDA  300 (460)
T ss_pred             HHHHHhh----cEEEEecCCCCcE----EEEEEEEecCceEEEEEEEEEecccchhHHHHHHHHH--HHHHHcCCCHHHH
Confidence            8776652    4455543 11111    11112222233333332 4578999999999999999  8999999999999


Q ss_pred             HHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEECC
Q 021862          246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGG  301 (306)
Q Consensus       246 ~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G~  301 (306)
                      .++|++|+|++||||++. ..+++.+|+| |||||+|++.+++.++   ++|+++|+|+
T Consensus       301 ~~~L~~~~~~~gR~e~~~-~~~~~~iI~D-yahNP~s~~aal~~l~~~~~~r~i~VlG~  357 (460)
T PRK00139        301 LAALAKLQGVPGRMERVD-AGQGPLVIVD-YAHTPDALEKVLEALRPHAKGRLICVFGC  357 (460)
T ss_pred             HHHHHhCCCCCCCcEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhcCCcEEEEECC
Confidence            999999999999999995 3467899999 6999999999999985   3689999984

>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase

Probab=100.00  E-value=4.6e-44  Score=343.03  Aligned_cols=273  Identities=25%  Similarity=0.346  Sum_probs=198.6

Q ss_pred             cCCeeeehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhh----ccccCC-----
Q 021862           24 SGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF----HCIALP-----   93 (306)
Q Consensus        24 ~~~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~----~~~~~~-----   93 (306)
                      +...+|++++..++..+ .+.++|+||||||||||++||+++|+..|+++++.++.|++......    ..++++     
T Consensus        65 d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~  144 (464)
T TIGR01085        65 DLRHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTL  144 (464)
T ss_pred             CHHHHHHHHHHHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHH
Confidence            33444556654443321 36789999999999999999999999999998777776655321100    000000     


Q ss_pred             ------CCCCCCcEEEEEecccccc--cCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCC
Q 021862           94 ------SSKPKFQVAVVEVSSYQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN  165 (306)
Q Consensus        94 ------~~~~~~~~~V~E~~~~~~~--~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd  165 (306)
                            ....+.|++|+|+|+++++  .+.. ++|+++|||||++||+++|+|+|+|+++|.++++.++++|.+|+|.||
T Consensus       145 ~~~l~~~~~~~~~~~VlE~g~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd  223 (464)
T TIGR01085       145 QSTLAEMVEAGAQYAVMEVSSHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDD  223 (464)
T ss_pred             HHHHHHHHHCCCCEEEEEecHHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCC
Confidence                  1134679999999986654  3333 799999999999999999999999999999999988778899999999


Q ss_pred             hhhHHHHhcccccEEEeccCC-------Ceeecc---ccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHH
Q 021862          166 QHLNEAIKGHRFNLAWIGAFP-------GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG  235 (306)
Q Consensus       166 ~~~~~~~~~~~~~~~~~g~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~  235 (306)
                      +.+..+.......+.++....       ++....   ......+.+...+...   .+.++++|.||++|+++|+  +++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~a  298 (464)
T TIGR01085       224 EYGAQFVKRLPKDITVSAITQPADGRAQDIKITDSGYSFEGQQFTFETPAGEG---HLHTPLIGRFNVYNLLAAL--ATL  298 (464)
T ss_pred             HHHHHHHHhcCCCeEEEEecCCCccccccEEEEEEEEecCceEEEEEeCCceE---EEEecCccHhHHHHHHHHH--HHH
Confidence            998777654433322221111       111100   0011223332221111   2478999999999999999  899


Q ss_pred             HHcC-CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEEC-CCCC
Q 021862          236 LDIG-VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLG-GQAK  304 (306)
Q Consensus       236 ~~lg-~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G-~~~~  304 (306)
                      ..+| ++++.|.++|++|+|++||||++. ..+++.+|+| |+|||+||+.+++.++   ++|+++|+| |.++
T Consensus       299 ~~lg~i~~e~i~~~L~~~~~~~gR~e~~~-~~~g~~vi~D-y~~NP~s~~aal~~l~~~~~~r~i~VlGlg~~~  370 (464)
T TIGR01085       299 LHLGGIDLEDIVAALEKFRGVPGRMELVD-GGQKFLVIVD-YAHTPDALEKALRTLRKHKDGRLIVVFGCGGDR  370 (464)
T ss_pred             HHcCCCCHHHHHHHHHhCCCCCCCcEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCcEEEEECCCCCC
Confidence            9998 999999999999999999999996 3467899999 6999999999999984   468899999 5443

A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=2.8e-43  Score=363.73  Aligned_cols=267  Identities=20%  Similarity=0.250  Sum_probs=203.9

Q ss_pred             hcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcC---CCcccccC----CChhhhhhhhccccCCCC
Q 021862           23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLG---IEAFVGGN----LGNPLSEAAFHCIALPSS   95 (306)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g---~~~~~~g~----~g~~~~~~~~~~~~~~~~   95 (306)
                      ++...+|++++..++.. .+.++|+||||||||||++|++++|+..|   ..+.+.|+    .|.|++...        .
T Consensus       584 ~d~~~al~~la~~~~~~-~~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~--------~  654 (958)
T PRK11929        584 DDTRAALGRLATAWRAR-FSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLR--------L  654 (958)
T ss_pred             CCHHHHHHHHHHHHHhc-CCCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhc--------C
Confidence            33344556666555544 36789999999999999999999999984   33455666    344433211        1


Q ss_pred             CCCCcEEEEEeccc---ccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHH
Q 021862           96 KPKFQVAVVEVSSY---QMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI  172 (306)
Q Consensus        96 ~~~~~~~V~E~~~~---~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~  172 (306)
                      ..+.+++|+|+|++   +++.....++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.||+....+.
T Consensus       655 ~~~~~~~VlE~s~~~~g~~~~~~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~  734 (958)
T PRK11929        655 RAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWA  734 (958)
T ss_pred             CCCCcEEEEEeCCCCCccHHHHhCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHH
Confidence            45678999999975   455444446999999999999999999999999999999999887889999999999887776


Q ss_pred             hcc-cccEEEeccCCCeeec-----cc-----cccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCC
Q 021862          173 KGH-RFNLAWIGAFPGVKID-----TE-----AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD  241 (306)
Q Consensus       173 ~~~-~~~~~~~g~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~  241 (306)
                      +.. ..++++||...+..+.     .+     .....+.+...+...   .++++++|.||++|+++|+  +++..+|++
T Consensus       735 ~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~  809 (958)
T PRK11929        735 KLAGARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQVVTPAGSA---EVYLPLIGEHNLRNALAAI--ACALAAGAS  809 (958)
T ss_pred             HhhcCCcEEEEeCCCCcceEeeecccceeecCCCceEEEEEECCceE---EEEeCCCcHHHHHHHHHHH--HHHHHcCCC
Confidence            543 3357788864321110     10     011122222211111   2478999999999999999  899999999


Q ss_pred             HHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEECCCCC
Q 021862          242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAK  304 (306)
Q Consensus       242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G~~~~  304 (306)
                      +++|.++|++|+|+|||||++. ..++..+|||+|||||+|++.+|++++   .+|+++|+|||++
T Consensus       810 ~~~i~~~L~~f~~~~gR~e~~~-~~~~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e  874 (958)
T PRK11929        810 LKQIRAGLERFQPVAGRMQRRR-LSCGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLE  874 (958)
T ss_pred             HHHHHHHHhhCCCCCCCceEEE-cCCCcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchh
Confidence            9999999999999999999996 357899999999999999999999985   2588999999876

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=5e-42  Score=324.74  Aligned_cols=261  Identities=25%  Similarity=0.396  Sum_probs=202.8

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~   82 (306)
                      +.|.+|+++++||.+..|++++.+++++.+.+.+... .+.++|+||||||||||+.||+++|+..|.++++.||+|.|+
T Consensus        62 lvV~s~gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p~  141 (418)
T PRK00683         62 LVVRSPGIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIPI  141 (418)
T ss_pred             EEEECCCCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHHH
Confidence            5789999999999999999999999999887654421 255799999999999999999999999999889999999987


Q ss_pred             hhhhhccccCCCCCCCCcEEEEEecccccccCCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEE
Q 021862           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (306)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~-~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~  161 (306)
                      ....          .+.+++|+|+|++++..... ...|+++|||||++||+|+|+|+|+|+++|.+++..+.+      
T Consensus       142 l~~~----------~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~s~e~y~~aK~~i~~~~~~------  205 (418)
T PRK00683        142 LDGM----------QQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLRN------  205 (418)
T ss_pred             HHHh----------hcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCCCHHHHHHHHHHHHHhhhC------
Confidence            3321          23578999999998765433 234489999999999999999999999999999875432      


Q ss_pred             eCCChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHH-cCC
Q 021862          162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGV  240 (306)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~-lg~  240 (306)
                       .|+....        ...+||..  .. . .... .+.....+       ..++++|.||++|+++|+  +++.. +|+
T Consensus       206 -~~~~~~~--------~~~~~~~~--~~-~-~~~~-~~~~~~~~-------~~~~~~g~hn~~Na~aA~--a~~~~l~g~  262 (418)
T PRK00683        206 -PDDLWVG--------DERSYGHS--YL-E-YVQE-IMRLLDKG-------SALKPLYLHDRYNYCAAY--ALANEVFPI  262 (418)
T ss_pred             -ccccccc--------ccCCcCce--ee-c-Ccch-hhhhhccc-------cccCCCccchHHHHHHHH--HHHHHhcCC
Confidence             2221110        11122211  00 0 0000 00000011       145788999999999999  88888 699


Q ss_pred             CHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE  305 (306)
Q Consensus       241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~  305 (306)
                      +.++|.++|++|++.+||||++. ..++..+|+|+||+||+|+.++++.++ +|+++|+|||.+.
T Consensus       263 ~~~~i~~~l~~~~~~~~R~e~v~-~~~g~~~i~Ds~~t~~~s~~~al~~~~-~~~i~vlG~~~~~  325 (418)
T PRK00683        263 SEESFLEAVATFEKPPHRMEYLG-EKDGVHYINDSKATTVSAVEKALLAVG-NQVIVILGGRNKG  325 (418)
T ss_pred             CHHHHHHHHHhCCCCCCceEEEe-ecCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCC
Confidence            99999999999999999999996 357899999999999999999999875 5799999998764

>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional

Probab=100.00  E-value=2.6e-42  Score=350.88  Aligned_cols=265  Identities=18%  Similarity=0.225  Sum_probs=203.1

Q ss_pred             HhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC----CChhhhhhhhccccCCCCCC
Q 021862           22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKP   97 (306)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~   97 (306)
                      +++...+|+.++..++.. .+.++|+||||||||||+.|++++|+..|.++.+.++    +|.|.+...        ..+
T Consensus        87 V~d~~~al~~la~~~~~~-~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~~~~~~n~~ig~p~~~~~--------~~~  157 (822)
T PRK11930         87 VKDPLKALQELAAYHRSQ-FDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQ--------LNE  157 (822)
T ss_pred             ECCHHHHHHHHHHHHHHh-CCCCEEEEeCCCcHHHHHHHHHHHHhccCcEecCCcccCcchhHHHHHhc--------CCC
Confidence            445555666776555443 5778999999999999999999999998877665544    455554221        135


Q ss_pred             CCcEEEEEeccccc---ccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhc
Q 021862           98 KFQVAVVEVSSYQM---EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG  174 (306)
Q Consensus        98 ~~~~~V~E~~~~~~---~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~  174 (306)
                      +.+++|+|+|+++.   +.+...++|+++|||||+.||+|+|+|+|+|+++|.++++.   .+.+|+|.||+....+...
T Consensus       158 ~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~~~~~~~  234 (822)
T PRK11930        158 EHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELISSCITK  234 (822)
T ss_pred             CCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHHHHHHHh
Confidence            77999999995433   22333478999999999999999999999999999999974   4789999999988776543


Q ss_pred             c--cccEEEeccCC---Ceee---ccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021862          175 H--RFNLAWIGAFP---GVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN  246 (306)
Q Consensus       175 ~--~~~~~~~g~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~  246 (306)
                      .  ..++++||...   ++..   ........+.+...+...   .++++++|+||++|+++|+  +++..+|+++++|.
T Consensus       235 ~~~~~~~~~~g~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~  309 (822)
T PRK11930        235 SNLTLKLISWSRKDPEAPLYIPFVEKKEDHTVISYTYKGEDF---HFEIPFIDDASIENLIHCI--AVLLYLGYSADQIQ  309 (822)
T ss_pred             hhcCCcEEEEcCCCCCCcEEEEEEEEcCCceEEEEEeCCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHH
Confidence            2  23567888532   2211   111112234433322222   3478999999999999999  89999999999999


Q ss_pred             HHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCCCC
Q 021862          247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK  304 (306)
Q Consensus       247 ~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~~~  304 (306)
                      ++|++|++++||||++. ..+++.+|||+|||||+|++++|++++    .+++++|+|||.+
T Consensus       310 ~~L~~f~~~~gR~e~~~-~~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~e  370 (822)
T PRK11930        310 ERMARLEPVAMRLEVKE-GINNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQ  370 (822)
T ss_pred             HHHHhCCCCCCeeEEEE-cCCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHh
Confidence            99999999999999996 467899999999999999999999885    2578999999976

>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional

Probab=100.00  E-value=1.8e-42  Score=333.05  Aligned_cols=262  Identities=24%  Similarity=0.305  Sum_probs=187.9

Q ss_pred             eeehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCCh-------------hhhhhhhccccCC
Q 021862           28 VMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN-------------PLSEAAFHCIALP   93 (306)
Q Consensus        28 ~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~-------------~~~~~~~~~~~~~   93 (306)
                      +|+.++..++..| .+.++|+||||||||||++|++++|+..|.++++.|+.|+             |.+....+... .
T Consensus        94 al~~la~~~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~~-~  172 (481)
T PRK14022         94 AMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKSALTTPESLDLFKMMA-E  172 (481)
T ss_pred             HHHHHHHHHhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeeccCCeeeeCCCCCchHHHHHHHHH-H
Confidence            4444444333222 4678999999999999999999999999988776666443             32111111000 0


Q ss_pred             CCCCCCcEEEEEecccccccCCc-eecccEEEEecCChhhhhc--cCCHHHHHHHHHHhhccccCCeeEEEeCC-ChhhH
Q 021862           94 SSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLER--HKTMKNYALTKCHLFSHMVNTKLGLLPFG-NQHLN  169 (306)
Q Consensus        94 ~~~~~~~~~V~E~~~~~~~~~~~-~~~p~i~viTni~~dH~~~--~gt~e~~~~~k~~i~~~~~~~~~~V~n~d-d~~~~  169 (306)
                      ....+.+++|+|+|+++....+. .++|+++|||||++||+++  |+|+|+|+++|.++++   +++.+|+|.| |+...
T Consensus       173 ~~e~g~~~~v~EvsS~~~~~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~  249 (481)
T PRK14022        173 AVDNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSE  249 (481)
T ss_pred             HHHCCCCEEEEEechhHHHhccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHH
Confidence            11346789999999876432222 3799999999999999999  8999999999999986   4689999998 55433


Q ss_pred             HHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 021862          170 EAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI  249 (306)
Q Consensus       170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l  249 (306)
                      ........++++||......+...   ..+.+...+..  ...++++++|+||++|+++|+  +++..+|++++.|.++|
T Consensus       250 ~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~--~~~~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~i~~~L  322 (481)
T PRK14022        250 LLEQVTPQEHDFYGIDSENQIMAS---NAFSFEATGKL--AGTYDIQLIGKFNQENAMAAG--LACLRLGASLEDIQKGI  322 (481)
T ss_pred             HHHHhcCCCEEEEecCCccceEEE---EEEEEEEcccC--CceEEEEEechhhHHHHHHHH--HHHHHcCCCHHHHHHHh
Confidence            222222336678875432111110   02333221110  001356799999999999999  89999999999999999


Q ss_pred             hcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEECCCC
Q 021862          250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQA  303 (306)
Q Consensus       250 ~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G~~~  303 (306)
                      ++ .++|||||++. ..+++.+|+| |||||+|++++++.++   ++|+++|+|.|.
T Consensus       323 ~~-~~~~gR~e~i~-~~~g~~vi~D-yahNP~s~~aal~~l~~~~~~r~i~V~G~~~  376 (481)
T PRK14022        323 AQ-TPVPGRMEVLT-QSNGAKVFID-YAHNGDSLNKLIDVVEEHQKGKLILLLGAAG  376 (481)
T ss_pred             cc-CCCCCCeEEEE-CCCCCEEEEE-CCCCHHHHHHHHHHHhhhCCCCEEEEECCCC
Confidence            99 88999999996 3467889999 5999999999999884   568999999765

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=7e-42  Score=353.38  Aligned_cols=271  Identities=23%  Similarity=0.287  Sum_probs=201.7

Q ss_pred             CeeeehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhcc-ccC-----------
Q 021862           26 KRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IAL-----------   92 (306)
Q Consensus        26 ~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~-----------   92 (306)
                      ..+|+.++..+...+ .+.++|+||||||||||++||+++|+.+|+++++.|++|+++....+.. .+.           
T Consensus        94 ~~al~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~i~~~~i~~~~t~~~~~~~~~~l~  173 (958)
T PRK11929         94 RKALGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDGRLIPGSLTTPDAIILHRILA  173 (958)
T ss_pred             HHHHHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCccccCCCeeeecCCCCCCHHHHHHHHH
Confidence            344455554232222 4678999999999999999999999999999999998887643221100 011           


Q ss_pred             CCCCCCCcEEEEEecccccccCCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHH
Q 021862           93 PSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA  171 (306)
Q Consensus        93 ~~~~~~~~~~V~E~~~~~~~~~~~-~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~  171 (306)
                      .....++|++|+|+|+++++..+. .++|+++|||||++||+++|||+|+|+++|.++++.+++++.+|+|.||+....+
T Consensus       174 ~~~~~~~~~~VlE~ss~~l~~~rl~~~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~  253 (958)
T PRK11929        174 RMRAAGADAVAMEASSHGLEQGRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARL  253 (958)
T ss_pred             HHHHCCCCEEEEEeccchHhhCcccccccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHH
Confidence            011457899999999877643222 2689999999999999999999999999999999987788999999999998887


Q ss_pred             Hhccc--ccEEEeccC--CCeee---ccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHH
Q 021862          172 IKGHR--FNLAWIGAF--PGVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA  244 (306)
Q Consensus       172 ~~~~~--~~~~~~g~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~  244 (306)
                      .+...  ..+.+++..  .++..   ..+.....+.+...+....   +.++++|+||++|+++|+  +++..+|+++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~  328 (958)
T PRK11929        254 LAALPRGLKVGYSPQNAGADVQARDLRATAHGQVFTLATPDGSYQ---LVTRLLGRFNVSNLLLVA--AALKKLGLPLAQ  328 (958)
T ss_pred             HHHcCCCceEEEEeeCCCccEEEEEEEEcCCceEEEEEeCCceEE---EEecCccHhhHHHHHHHH--HHHHHcCCCHHH
Confidence            65432  234445432  12211   1111122344433222222   378999999999999999  899999999999


Q ss_pred             HHHHhhcCCCCCCeeeEEe--eccCCEEEEEcCCCCcHHHHHHHHhccC------CCcEEEEECCC
Q 021862          245 LNSTIEILRTPPHRMQIVH--RDIQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQ  302 (306)
Q Consensus       245 i~~~l~~~~~~~gR~e~~~--~~~~~~~ii~D~~~~n~~s~~~al~~~~------~~~~i~v~G~~  302 (306)
                      |.++|++|++++||||++.  ...+++.+|+| |||||+|++++++.++      ++|+++|+|..
T Consensus       329 I~~~L~~~~~~~gR~e~i~~~~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~g  393 (958)
T PRK11929        329 IARALAAVSPVPGRMERVGPTAGAQGPLVVVD-YAHTPDALAKALTALRPVAQARNGRLVCVFGCG  393 (958)
T ss_pred             HHHHHhcCCCCCCCcEEeccccCCCCCEEEEE-CCCCHHHHHHHHHHHHHhcccCCCcEEEEECCC
Confidence            9999999999999999993  12457788999 5999999999999885      36789999854

>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase

Probab=100.00  E-value=1.2e-40  Score=313.45  Aligned_cols=250  Identities=21%  Similarity=0.229  Sum_probs=182.4

Q ss_pred             CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC------------Chhhhhhhhc-----------cc-cCC---
Q 021862           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFH-----------CI-ALP---   93 (306)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~------------g~~~~~~~~~-----------~~-~~~---   93 (306)
                      ++.++|+||||||||||++|++++|++.|++++++++.            |.+++...+.           .. .++   
T Consensus        16 ~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~f   95 (397)
T TIGR01499        16 DLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPILEKLSQQPTYF   95 (397)
T ss_pred             hhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHHHhccCCCCHH
Confidence            35689999999999999999999999999999877662            3443331110           00 011   


Q ss_pred             ----------CCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhhccccCCeeEEEe
Q 021862           94 ----------SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLP  162 (306)
Q Consensus        94 ----------~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~~i~~~~~~~~~~V~n  162 (306)
                                +...++|++|+|+|.++.......++|+++|||||+.||+++|| |+|+|+++|.++++   +++.+|+|
T Consensus        96 e~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~I~k---~~~~~v~~  172 (397)
T TIGR01499        96 ELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVIEPLVSVITSIGLDHTEILGDTLEEIAWEKAGIIK---EGVPIVTG  172 (397)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeecCCCCcccccccCCCeEEEccccHHHHHHhCccHHHHHHHHhCccC---CCCCEEEc
Confidence                      23568999999999755433333478999999999999999999 99999999999987   46789999


Q ss_pred             CCChhhHHHHhc----ccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHc
Q 021862          163 FGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI  238 (306)
Q Consensus       163 ~dd~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~l  238 (306)
                      .||+....+.++    .+.++++++..  ..+.. .....+.+.....  ....++++++|.||++|+++|+  +++..+
T Consensus       173 ~d~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~--~~~~~~~~l~G~~~~~N~~~Ai--aa~~~l  245 (397)
T TIGR01499       173 PQEPEALNVLKKKAQEKGAPLFVVGRD--FNYSE-TDENYLSFSGANL--FLEPLALSLLGDHQAENAALAL--AALEVL  245 (397)
T ss_pred             CCChHHHHHHHHHHHHcCCCEEEeccc--eeecc-cccceEEeecccc--cccccCCCCCCHHHHHHHHHHH--HHHHHH
Confidence            999887665432    23345555532  11110 0112233321111  1112367899999999999999  788888


Q ss_pred             CC-----CHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCCCC
Q 021862          239 GV-----DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK  304 (306)
Q Consensus       239 g~-----~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~~~  304 (306)
                      |.     +++.|.++|+++. .|||||++.  .+++.+|.|+ +|||+|++.+++.++    ++++++|+|++.+
T Consensus       246 g~~~~~i~~~~i~~~L~~~~-~pGR~e~i~--~~~~~viiD~-AHNp~a~~~~l~~l~~~~~~~~i~~V~G~~~d  316 (397)
T TIGR01499       246 GKQRPKLSEEAIRKGLANTI-WPGRLEILS--EDNPNILLDG-AHNPHSAEALAEWFKKRFNGRPIILLFGALAD  316 (397)
T ss_pred             HhccCCCCHHHHHHHHHhCC-CCceEEEEe--cCCCEEEEEC-CCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCC
Confidence            75     5899999999997 599999995  3356777775 999999999999884    3578899988654

A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.

>TIGR02068 cya_phycin_syn cyanophycin synthetase

Probab=100.00  E-value=8.7e-39  Score=324.47  Aligned_cols=259  Identities=19%  Similarity=0.228  Sum_probs=192.7

Q ss_pred             CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhcc--------ccCCCCCCCCcEEEEEecccccc
Q 021862           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC--------IALPSSKPKFQVAVVEVSSYQME  112 (306)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~--------~~~~~~~~~~~~~V~E~~~~~~~  112 (306)
                      .+.|+|+||||||||||++|++++|++.|+++++.++.|..+.......        ......++++|++|+|++++++.
T Consensus       477 ~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~l~~~~vd~aVlE~~~ggil  556 (864)
T TIGR02068       477 GRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRILMDPTVDAAVLETARGGIL  556 (864)
T ss_pred             CceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHHhhCCCCCEEEEEccCCchh
Confidence            4678999999999999999999999999999987666544332211100        00012356789999999998864


Q ss_pred             cCC-ceecccEEEEecCChhhhhcc--CCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhcccccEEEeccCCCee
Q 021862          113 IPN-KYFCPTVSVVLNLTPDHLERH--KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK  189 (306)
Q Consensus       113 ~~~-~~~~p~i~viTni~~dH~~~~--gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~  189 (306)
                      ... ...+|+++|||||+.||++++  +|+|+|+++|+.+++.++++|.+|+|.|||.+..+++.+..++++|+...+..
T Consensus       557 ~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~~~~~~vi~f~~~~~~~  636 (864)
T TIGR02068       557 REGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAMAEKCKGKIAYFSMDPNNP  636 (864)
T ss_pred             hccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHhCCCCEEEEecCCCCh
Confidence            433 335799999999999999865  69999999999999988889999999999999888877777888888643211


Q ss_pred             -----eccccc-----cceEEEecCCeee---EEEeeccCCCC--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 021862          190 -----IDTEAK-----TASFEVPAVGVVS---QLQLHNMKVMG--RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT  254 (306)
Q Consensus       190 -----~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~l~G--~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~  254 (306)
                           +.....     ...+....++...   ....+++.++|  .||++|+++|+  ++++.+|++++.|+++|++|++
T Consensus       637 ~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAi--aaa~~lgi~~e~I~~gL~~F~~  714 (864)
T TIGR02068       637 TVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAV--AAAWALGVPIELIRAGIRTFDA  714 (864)
T ss_pred             HHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccCCcccchHHHHHHHH--HHHHHcCCCHHHHHHHHHhccc
Confidence                 110100     0001111111111   11123445555  89999999999  8999999999999999999987


Q ss_pred             ----CCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc---CCCcEEEEECCCCC
Q 021862          255 ----PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAK  304 (306)
Q Consensus       255 ----~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~---~~~~~i~v~G~~~~  304 (306)
                          .|||||++.  .+++.+|+|+ +|||+|++.+++.+   +.+|+++|+|+++.
T Consensus       715 ~~~~~pGR~e~~~--~~g~~vI~Dy-AHNP~a~~all~~l~~~~~~r~i~Vig~~gd  768 (864)
T TIGR02068       715 DAAQAPGRFNLFN--LGGAHVLVDY-GHNPAAIEAVGAAIRNWPARRRIGVIGGPGD  768 (864)
T ss_pred             cccCCCCceEEEE--eCCcEEEEEc-CCCHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence                899999994  4678899995 99999999777765   34678999998764

Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.

>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.3e-38  Score=302.50  Aligned_cols=267  Identities=26%  Similarity=0.339  Sum_probs=203.0

Q ss_pred             eehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh-hhhhc-cccCC-----------C
Q 021862           29 MSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS-EAAFH-CIALP-----------S   94 (306)
Q Consensus        29 l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~-~~~~~-~~~~~-----------~   94 (306)
                      ++..+..+...| ++.++|+||||||||||++++.++++..|.++++.|+.|..++ ..... ..++|           .
T Consensus        76 ~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~  155 (475)
T COG0769          76 LTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDL  155 (475)
T ss_pred             HHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHH
Confidence            334443333333 3589999999999999999999999999999988887665553 11110 11222           1


Q ss_pred             CCCCCcEEEEEecccccccCCce-ecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHH-
Q 021862           95 SKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI-  172 (306)
Q Consensus        95 ~~~~~~~~V~E~~~~~~~~~~~~-~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~-  172 (306)
                      .....++++||++++++...+.. +..+++++||++.||+|+|+|+|+|+.+|..+|..++..+..|+|.||+....+. 
T Consensus       156 ~d~~~e~~vmEvssh~l~~~Rv~~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~  235 (475)
T COG0769         156 LDRGAEIAVMEVSSHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKE  235 (475)
T ss_pred             HHcCCcEEEEEeehhHHHhCCccCceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHH
Confidence            25568999999999988766553 4679999999999999999999999999999998677888999999999984443 


Q ss_pred             --hcccccEEEeccCCCee------eccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHH
Q 021862          173 --KGHRFNLAWIGAFPGVK------IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA  244 (306)
Q Consensus       173 --~~~~~~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~  244 (306)
                        .....+.++||...+..      ++....+..+.+...+...   .++++++|.||++|+++|+  ++++.+|+|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~---~~~~~L~G~fNv~NaLaA~--a~~~~lG~~~e~  310 (475)
T COG0769         236 RLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIG---EYELPLPGLFNVYNALAAV--AAALALGVDLED  310 (475)
T ss_pred             HHHhcCCCEEEeCCCCchhhhhhccceeeeccceeEEEccCCce---eEeccccchhHHHHHHHHH--HHHHHcCCCHHH
Confidence              33333677888654311      1111122222233222222   3488999999999999999  899999999999


Q ss_pred             HHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEECCCC
Q 021862          245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQA  303 (306)
Q Consensus       245 i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G~~~  303 (306)
                      |.++|++++|++||||.+.  .++..++.|+ +|||+|++++|++++   .+|+++|+|.-+
T Consensus       311 i~~~l~~~~~v~GRmE~v~--~~~~~v~VDy-AHnPd~le~~L~~~~~~~~g~li~VfG~gG  369 (475)
T COG0769         311 ILAGLETLKPVPGRMELVN--IGGKLVIVDY-AHNPDGLEKALRAVRLHAAGRLIVVFGCGG  369 (475)
T ss_pred             HHHHHHhcCCCCCcceEec--CCCCeEEEEe-ccChHHHHHHHHHHHhhcCCcEEEEECccC
Confidence            9999999999999999995  4478888885 999999999999885   478999997644

>PLN02913 dihydrofolate synthetase

Probab=100.00  E-value=6.4e-37  Score=294.78  Aligned_cols=269  Identities=16%  Similarity=0.191  Sum_probs=185.6

Q ss_pred             eehHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------C--Chhhhhhhhcc--
Q 021862           29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------L--GNPLSEAAFHC--   89 (306)
Q Consensus        29 l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~--g~~~~~~~~~~--   89 (306)
                      |.|+..+.+.++   .+.++|+|||||||+||++|+.+||+++|++|+++++            .  |.+++...+..  
T Consensus        58 L~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~  137 (510)
T PLN02913         58 LGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLF  137 (510)
T ss_pred             HHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHH
Confidence            566666655552   3568999999999999999999999999999987655            2  55555443210  


Q ss_pred             ---------c-------cCC-----------CCCCCCcEEEEEeccccc-ccCCceec---ccEEEEecCChhhhhccC-
Q 021862           90 ---------I-------ALP-----------SSKPKFQVAVVEVSSYQM-EIPNKYFC---PTVSVVLNLTPDHLERHK-  137 (306)
Q Consensus        90 ---------~-------~~~-----------~~~~~~~~~V~E~~~~~~-~~~~~~~~---p~i~viTni~~dH~~~~g-  137 (306)
                               .       .+.           +...++|++|+|+|.|+. |..+. +.   |+++|||||+.||++++| 
T Consensus       138 ~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNv-i~~~~p~vsVITnIg~DH~~~LG~  216 (510)
T PLN02913        138 HGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNV-IDSSGLAASVITTIGEEHLAALGG  216 (510)
T ss_pred             HHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccc-cCCCCCcEEEEccccHHHHhhhcc
Confidence                     0       000           335789999999998655 55554 44   599999999999999998 


Q ss_pred             CHHHHHHHHHHhhccccCCeeEEEeC-CChhhHHHH----hcccccEEEeccC-CCeeecc-c-cccceEEEec-----C
Q 021862          138 TMKNYALTKCHLFSHMVNTKLGLLPF-GNQHLNEAI----KGHRFNLAWIGAF-PGVKIDT-E-AKTASFEVPA-----V  204 (306)
Q Consensus       138 t~e~~~~~k~~i~~~~~~~~~~V~n~-dd~~~~~~~----~~~~~~~~~~g~~-~~~~~~~-~-~~~~~~~~~~-----~  204 (306)
                      |+|+|+.+|+++++   +++.+|++. ..+....++    ++.+.+++.++.. .++.... . .....+.+..     .
T Consensus       217 Tle~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (510)
T PLN02913        217 SLESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVE  293 (510)
T ss_pred             cHHHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEeccccccceeecccccCCceeEEeccccccc
Confidence            99999999999987   577888875 334444433    3334555555321 1111100 0 0111122210     0


Q ss_pred             C---eeeEEEeeccCCCChhHHHHHHHHHHHHHHHHc-----CCCHHHHHHHhhcCCCCCCeeeEEeec------cCCEE
Q 021862          205 G---VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-----GVDVEALNSTIEILRTPPHRMQIVHRD------IQGVT  270 (306)
Q Consensus       205 ~---~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~l-----g~~~~~i~~~l~~~~~~~gR~e~~~~~------~~~~~  270 (306)
                      +   .......++++++|.||++|+++|+  +++..+     +++.+.|+++|++++| |||||++...      ..+..
T Consensus       294 ~~~~~~~~~~~~~l~L~G~hq~~Naa~Al--aa~~~L~~~~~~i~~~~I~~gL~~~~~-pGR~E~i~~~~~~~~~~~~~~  370 (510)
T PLN02913        294 KDDPLFIELSDVNLRMLGSHQLQNAVTAA--CAALCLRDQGWRISDASIRAGLENTNL-LGRSQFLTSKEAEVLGLPGAT  370 (510)
T ss_pred             cccccccccccccCCCCCHHHHHHHHHHH--HHHHHHHhcCCCCCHHHHHHHHHhCCC-CCceEEeeccccccccCCCCE
Confidence            0   0001112468899999999999999  677776     6999999999999996 8999998411      12457


Q ss_pred             EEEcCCCCcHHHHHHHHhccC----CCcEEEEECCCCCC
Q 021862          271 WVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKE  305 (306)
Q Consensus       271 ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~~~~  305 (306)
                      ||+|+ +|||+|++.+++.++    ++|+++|+|-++++
T Consensus       371 vIlDg-AHNp~s~~al~~~L~~~~~~~ki~~V~gml~DK  408 (510)
T PLN02913        371 VLLDG-AHTKESAKALVDTIKTAFPEARLALVVAMASDK  408 (510)
T ss_pred             EEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEEEccCCC
Confidence            89997 799999999998773    45677777765543

>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional

Probab=100.00  E-value=8.5e-37  Score=288.68  Aligned_cols=255  Identities=19%  Similarity=0.176  Sum_probs=177.0

Q ss_pred             eeehHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------CChhhhhhhhcc---
Q 021862           28 VMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHC---   89 (306)
Q Consensus        28 ~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~---   89 (306)
                      -|.++..+.+.++   .+.++|+||||||||||++|++++|+++|++++++++            .|.+++......   
T Consensus        31 ~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~  110 (416)
T PRK10846         31 GLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFA  110 (416)
T ss_pred             ChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHH
Confidence            4666666655553   3568999999999999999999999999999987764            133433221100   


Q ss_pred             ----------c----------cCCCCCCCCcEEEEEec-ccccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHH
Q 021862           90 ----------I----------ALPSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC  147 (306)
Q Consensus        90 ----------~----------~~~~~~~~~~~~V~E~~-~~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~  147 (306)
                                +          ...+..+++|++|+|+| +|+++..+. ++|+++|||||++||+++|| |+|+|+++|+
T Consensus       111 ~~~~~~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggrld~tn~-i~p~vaviTnI~~DHld~lG~t~e~ia~~Ka  189 (416)
T PRK10846        111 EIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGREKA  189 (416)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCCchhhhc-cCCCEEEECCccHHHHHHhcCCHHHHHHHHH
Confidence                      0          00123567899999999 566676665 78999999999999999999 8999999999


Q ss_pred             HhhccccCCeeEEEeCCC-hh-hHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHH
Q 021862          148 HLFSHMVNTKLGLLPFGN-QH-LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHN  225 (306)
Q Consensus       148 ~i~~~~~~~~~~V~n~dd-~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N  225 (306)
                      .+++.   ++.+|+|.+| +. ....+++.+.++..++..  ..+..+.  ..+.+.....  .  ...++++ .||++|
T Consensus       190 ~Iik~---~~~~V~~~~d~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~--~~~~~l~-~~~~~N  257 (416)
T PRK10846        190 GIFRA---EKPAVVGEPDMPSTIADVAQEKGALLQRRGVD--WNYSVTD--HDWAFSDGDG--T--LENLPLP-NVPLPN  257 (416)
T ss_pred             hhhcC---CCeEEECCccHhHHHHHHHHHhCCcEEEecce--eeeeccC--ceEEEecCcc--c--cccCCcc-chHHHH
Confidence            99873   6778998766 33 223444444454433321  1111010  1122211110  1  1134555 489999


Q ss_pred             HHHHHHHHHHHH--cCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc---C-CCcEEEEE
Q 021862          226 AAVAALSVLGLD--IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---K-GHKCVILL  299 (306)
Q Consensus       226 ~l~A~~~a~~~~--lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~---~-~~~~i~v~  299 (306)
                      +++|+  +++..  ++++.+.|.++|++++ +|||||++.  .. ..+|+|+ +|||+|++.+++.+   + ++|+++|+
T Consensus       258 ~~~Ai--a~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~-~~iI~D~-AHNp~a~~~l~~~L~~~~~~~~ii~Vf  330 (416)
T PRK10846        258 AATAL--AALRASGLEVSEQAIRDGIASAI-LPGRFQIVS--ES-PRVILDV-AHNPHAAEYLTGRLKALPKNGRVLAVI  330 (416)
T ss_pred             HHHHH--HHHHHcCCCCCHHHHHHHHHhCC-CCceEEEEc--CC-CcEEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            99998  66643  5799999999999998 699999994  33 3578886 99999999985543   3 46899888


Q ss_pred             CCC
Q 021862          300 GGQ  302 (306)
Q Consensus       300 G~~  302 (306)
                      |-+
T Consensus       331 g~~  333 (416)
T PRK10846        331 GML  333 (416)
T ss_pred             Eee
Confidence            765

>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]

Probab=100.00  E-value=7.3e-37  Score=284.36  Aligned_cols=259  Identities=21%  Similarity=0.240  Sum_probs=186.8

Q ss_pred             eehHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------CChhhhhhhhcc----
Q 021862           29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHC----   89 (306)
Q Consensus        29 l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~----   89 (306)
                      |.|+..+.+.++   ++.++|+|+|||||+||++|+++||.++|++++.+++            .|.+++...+..    
T Consensus        27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~  106 (427)
T COG0285          27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER  106 (427)
T ss_pred             hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence            777777766663   4678999999999999999999999999999966554            244554433211    


Q ss_pred             ---ccC-------------------CCCCCCCcEEEEEecccc-cccCCceecccEEEEecCChhhhhccC-CHHHHHHH
Q 021862           90 ---IAL-------------------PSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT  145 (306)
Q Consensus        90 ---~~~-------------------~~~~~~~~~~V~E~~~~~-~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~  145 (306)
                         ...                   .+...++|++|+|+|.|+ +|.+++ +.|+++|||+|+.||++++| |+|+|+.+
T Consensus       107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATNV-i~p~vsvIT~I~lDH~~~LG~tie~IA~E  185 (427)
T COG0285         107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNV-IEPDVSVITSIGLDHTAFLGDTLESIARE  185 (427)
T ss_pred             HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccccchhc-cCCceEEEcccChhHHHHhCCcHHHHHHH
Confidence               000                   022556999999999765 455654 88999999999999999999 99999999


Q ss_pred             HHHhhccccCCeeEEEeC-CChhhHHHHhc----ccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCCh
Q 021862          146 KCHLFSHMVNTKLGLLPF-GNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR  220 (306)
Q Consensus       146 k~~i~~~~~~~~~~V~n~-dd~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  220 (306)
                      |+.+++.   +..+|+.. +.|.+...+++    ...++..++.+  .....+  +..+.+...+...   .+.++++|.
T Consensus       186 KAGI~k~---g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~---~~~lp~l~~  255 (427)
T COG0285         186 KAGIIKA---GKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPD--FQVLEE--GNGFSFQGGGGLL---DLPLPLLGG  255 (427)
T ss_pred             hhhhccC---CCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccc--hhhccc--cceEEEecCCeee---eeccccccc
Confidence            9999874   55678876 55666665432    23333333221  111111  1233333222222   348898888


Q ss_pred             h-HHHHHHHHHHHHHHHHcC--CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CC
Q 021862          221 H-NYHNAAVAALSVLGLDIG--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GH  293 (306)
Q Consensus       221 ~-~~~N~l~A~~~a~~~~lg--~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~  293 (306)
                      | |..|+++|+  +++..++  ++++.|+++|++..| |||||++.  .+ +.|+.|. +|||+|+....+.++    .+
T Consensus       256 ~~Q~~NAa~Ai--~al~~l~~~i~~~~i~~gl~~~~w-pGR~e~l~--~~-p~i~lDg-AHNp~aa~~La~~l~~~~~~~  328 (427)
T COG0285         256 HHQIENAALAI--AALEALGKEISEEAIRKGLANVDW-PGRLERLS--EN-PLILLDG-AHNPHAARALAETLKTLFNDR  328 (427)
T ss_pred             hhHHHHHHHHH--HHHHHhcccCCHHHHHHHHHhCcC-CceEEEec--CC-CeEEEEC-CCCHHHHHHHHHHHHHHhccC
Confidence            7 999999999  8888887  589999999999997 99999994  44 4566665 999999998887763    33


Q ss_pred             c-EEEEECCCCCC
Q 021862          294 K-CVILLGGQAKE  305 (306)
Q Consensus       294 ~-~i~v~G~~~~~  305 (306)
                      + +++|+|-..+|
T Consensus       329 ~~~~~v~g~l~dK  341 (427)
T COG0285         329 PRLTLVFGMLKDK  341 (427)
T ss_pred             CceEEEEEeecCC
Confidence            4 88999986654

>PLN02881 tetrahydrofolylpolyglutamate synthase

Probab=100.00  E-value=1.2e-33  Score=269.02  Aligned_cols=235  Identities=21%  Similarity=0.226  Sum_probs=169.5

Q ss_pred             eeehHHHHHhhCC-----CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------CChhhhhhhh---
Q 021862           28 VMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAF---   87 (306)
Q Consensus        28 ~l~~~~~~~~~~~-----~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~g~~~~~~~~---   87 (306)
                      -|.++..+.+.++     +++++|+||||||||||++|+.+||+++|++++++++            .|.+++...+   
T Consensus        41 ~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~  120 (530)
T PLN02881         41 QFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRY  120 (530)
T ss_pred             ChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHH
Confidence            3556665555442     3568999999999999999999999999999987766            2445544211   


Q ss_pred             --------cccc-C----C-------------CCCCCCcEEEEEecc-cccccCCceecccEEEEecCChhhhhccC-CH
Q 021862           88 --------HCIA-L----P-------------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM  139 (306)
Q Consensus        88 --------~~~~-~----~-------------~~~~~~~~~V~E~~~-~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~  139 (306)
                              .... .    +             +...++|++|+|+|. |..|..+...+|++++||||+.||++++| |+
T Consensus       121 f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tl  200 (530)
T PLN02881        121 FWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTL  200 (530)
T ss_pred             HHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCH
Confidence                    1000 0    1             125678999999995 55666665348999999999999999999 99


Q ss_pred             HHHHHHHHHhhccccCCeeEEEeCCChhhHHHHh----cccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeecc
Q 021862          140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM  215 (306)
Q Consensus       140 e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (306)
                      |+|+.+|++|++   ++..+|+..+++.+..+++    +.+.+....+..       +    .+.+         ...++
T Consensus       201 e~IA~~KagI~k---~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~~-------~----~~~~---------~~~~l  257 (530)
T PLN02881        201 GKIAGEKAGIFK---PGVPAFTVPQPDEAMRVLEERASELGVPLQVVEPL-------D----SYGL---------SGLKL  257 (530)
T ss_pred             HHHHHHHHHHHh---cCCCEEEeCCChHHHHHHHHHHHHhCCcEEEeccc-------c----ccee---------cccCC
Confidence            999999999987   4666777766776665543    223333322210       0    0111         11367


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHc---------------CCCHHHHHHHhhcCCCCCCeeeEEeecc-------CCEEEEE
Q 021862          216 KVMGRHNYHNAAVAALSVLGLDI---------------GVDVEALNSTIEILRTPPHRMQIVHRDI-------QGVTWVD  273 (306)
Q Consensus       216 ~l~G~~~~~N~l~A~~~a~~~~l---------------g~~~~~i~~~l~~~~~~~gR~e~~~~~~-------~~~~ii~  273 (306)
                      ++.|.||..|+++|+  +++..+               ...++.+.++|+++.| |||||++. ..       +++.++.
T Consensus       258 ~L~G~~Q~~NaalAl--a~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~w-pGR~e~v~-~~~~~~~~~~~~~~~L  333 (530)
T PLN02881        258 GLAGEHQYLNAGLAV--ALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTASL-QGRAQVVP-DSYINSEDSGDLVFYL  333 (530)
T ss_pred             CCCChhHHHhHHHHH--HHHHHHHhhccccccccccccCCCHHHHHHHHHhCCC-CceEEEec-cccccccCCCCCeEEE
Confidence            899999999999999  566543               2345689999999996 99999994 21       4567888


Q ss_pred             cCCCCcHHHHHHHHhcc
Q 021862          274 DSKATNLEATCTGLMDL  290 (306)
Q Consensus       274 D~~~~n~~s~~~al~~~  290 (306)
                      |. ||||+|++.+.+.+
T Consensus       334 DG-AHNp~s~~~l~~wf  349 (530)
T PLN02881        334 DG-AHSPESMEACARWF  349 (530)
T ss_pred             EC-CCCHHHHHHHHHHH
Confidence            87 99999999887765

>PRK14016 cyanophycin synthetase; Provisional

Probab=100.00  E-value=8.3e-34  Score=283.27  Aligned_cols=251  Identities=18%  Similarity=0.197  Sum_probs=176.8

Q ss_pred             cccccccCc-hHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhh
Q 021862            7 FLLEFQLKA-TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA   85 (306)
Q Consensus         7 ~~~~~~~~~-p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~   85 (306)
                      .+|+++... |....++..+.+++..+.....  +.+.|+|+||||||||||++|++++|+..|++++..++.|.++...
T Consensus       445 ~sPgi~~~~~p~~g~~r~v~~~Iid~L~~~~~--~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~  522 (727)
T PRK14016        445 AAPGLRMHLAPSEGKPRNVGEAIVDMLFPEGD--DGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGR  522 (727)
T ss_pred             CCcchhhccCCCCCcchhHHHHHHHHhcccCC--CCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCE
Confidence            456666543 5544455544445544322111  1367899999999999999999999999999998778776554211


Q ss_pred             hhc--------cccCCCCCCCCcEEEEEecccccccCCc-eecccEEEEecCChhhhhccC--CHHHHHHHHHHhhcccc
Q 021862           86 AFH--------CIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHK--TMKNYALTKCHLFSHMV  154 (306)
Q Consensus        86 ~~~--------~~~~~~~~~~~~~~V~E~~~~~~~~~~~-~~~p~i~viTni~~dH~~~~g--t~e~~~~~k~~i~~~~~  154 (306)
                      ...        .......+++.|++|+|++++++..... ..+|+++|||||+.||+++++  |+|+|+.+|..+++.++
T Consensus       523 ~i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~  602 (727)
T PRK14016        523 LIDKGDCTGPKSARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVK  602 (727)
T ss_pred             EeccccccCHHHHHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhC
Confidence            100        0000012456799999999988743222 358999999999999999885  99999999999999888


Q ss_pred             CCeeEEEeCCChhhHHHHhcccccEEEeccCCCeee-----ccccc-----cceEEEecCCeee---EEEeeccCCCC--
Q 021862          155 NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI-----DTEAK-----TASFEVPAVGVVS---QLQLHNMKVMG--  219 (306)
Q Consensus       155 ~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~-----~~~~~~~~~~~~~---~~~~~~~~l~G--  219 (306)
                      ++|++|+|.||+.+..+.+.+..++++|+..++..+     .....     ...+.+...+.+.   .+..+++.++|  
T Consensus       603 ~~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~i~l~~~G~~  682 (727)
T PRK14016        603 PDGYAVLNADDPMVAAMAERCKGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEIRIISLADIPLTLGGKA  682 (727)
T ss_pred             CCCeEEEcCCCHHHHHHHHhCCCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcceeeccccccceecCCcc
Confidence            899999999999999888777778888886542111     11110     0011111111111   11123444476  


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CCCeeeE
Q 021862          220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT----PPHRMQI  261 (306)
Q Consensus       220 ~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~----~~gR~e~  261 (306)
                      .||++|+++|+  |+|+.+|++++.|.++|++|++    .||||++
T Consensus       683 ~hnv~NalAAi--Aaa~~lGi~~~~I~~~L~sF~~~~~~~pGR~n~  726 (727)
T PRK14016        683 GFNIENALAAI--AAAWALGIDIELIRAGLRTFVSDAAQAPGRFNL  726 (727)
T ss_pred             hhhHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCccCCCccccc
Confidence            79999999999  8999999999999999999996    8999986

>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment

Probab=100.00  E-value=2.1e-32  Score=231.75  Aligned_cols=180  Identities=23%  Similarity=0.322  Sum_probs=132.9

Q ss_pred             EecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhccccCCCCCCCCcEEEEEeccccccc--CCceecccEEEE
Q 021862           48 VTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI--PNKYFCPTVSVV  125 (306)
Q Consensus        48 VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~--~~~~~~p~i~vi  125 (306)
                      ||||||||||++||+++|+++|.++++.|+.+...........   ....+.|++|+|+|+++...  +...++|+++||
T Consensus         1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~E~~~~~~~~~~l~~~~~p~i~vi   77 (188)
T PF08245_consen    1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNTNNQIGLPLLLLN---AREGGADIAVLEVSEGGLGDERLSFLLKPDIAVI   77 (188)
T ss_dssp             EESSSSHHHHHHHHHHHHHHTTEEEEEESSCHHHHHHHHHHHH---HHHTTSSEEEEEESSSCCCTSTTSGGSBESEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHhh---hcccccceeeeeccCCccccceeeeeeehheeee
Confidence            8999999999999999999999999888873332221111000   01347899999999885543  222378999999


Q ss_pred             ecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhcccccEEEeccCCCeeec-----cccccceEE
Q 021862          126 LNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TEAKTASFE  200 (306)
Q Consensus       126 Tni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~  200 (306)
                      |||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||.+.........++++||...+..+.     .......+.
T Consensus        78 Tni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (188)
T PF08245_consen   78 TNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASNISYSEEGGRFR  157 (188)
T ss_dssp             ----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEEEEEETTEEEEE
T ss_pred             ceecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeeeEEEecCCcEEE
Confidence            999999999999999999999999999988999999999998888888777789999987654221     111222332


Q ss_pred             Ee-cCCeeeEEEeeccCCCChhHHHHHHHHHHHHHH
Q 021862          201 VP-AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG  235 (306)
Q Consensus       201 ~~-~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~  235 (306)
                      +. ..+...+   ++++++|+||++|+++|+  ++|
T Consensus       158 i~~~~~~~~~---~~~~l~G~hn~~NalaA~--a~a  188 (188)
T PF08245_consen  158 IISYNGEEFE---IELPLPGKHNVENALAAI--AAA  188 (188)
T ss_dssp             EEEETTEEEE---EEESSSSHHHHHHHHHHH--HHH
T ss_pred             EEEecCceEE---EEecCCCHHHHHHHHHHH--HhC
Confidence            22 2333333   489999999999999999  665

The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....

>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]

Probab=99.96  E-value=2.5e-28  Score=224.54  Aligned_cols=241  Identities=23%  Similarity=0.270  Sum_probs=169.5

Q ss_pred             CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------CChhhhhhhhccc----------------cC
Q 021862           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHCI----------------AL   92 (306)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~~----------------~~   92 (306)
                      +++.+|||+|||||+||++++++||+++|++++.+++            .|.|+|...+...                .+
T Consensus        70 ~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~  149 (496)
T KOG2525|consen   70 NSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSM  149 (496)
T ss_pred             hheeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCC
Confidence            4678999999999999999999999999999965554            3555554432110                00


Q ss_pred             -------------CCCCCCCcEEEEEecc-cccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhhccccCCe
Q 021862           93 -------------PSSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK  157 (306)
Q Consensus        93 -------------~~~~~~~~~~V~E~~~-~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~~i~~~~~~~~  157 (306)
                                   .+..+++|++|+|+|. |..|..+++-+|-++.||+|+.||++++| |+++|+..|+.+|+.   +.
T Consensus       150 p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~---gv  226 (496)
T KOG2525|consen  150 PTYFEFLTLLAFHVFVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKE---GV  226 (496)
T ss_pred             CchhhhhHhhhheeeeecCCcEEEEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhcccccc---CC
Confidence                         1346789999999996 56677777668999999999999999998 999999999999874   55


Q ss_pred             eEEEeCCChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHH
Q 021862          158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD  237 (306)
Q Consensus       158 ~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~  237 (306)
                      .++...+++.+..++++......                ....+.......++....+.+.|.||..|+.+|+..+-++.
T Consensus       227 paft~~q~~e~~nvL~~ra~e~~----------------~~L~~v~p~~~~~ls~~~lgl~g~hq~~na~lA~~L~~~~~  290 (496)
T KOG2525|consen  227 PAFTVPQPPEALNVLKERASELG----------------VPLFVVPPLEAYELSGVNLGLIGTHQWSNASLAVQLASEWL  290 (496)
T ss_pred             ceEEcCCcHHHHHHHHHHHHhcC----------------CCceecCCchhhhhcCCcccccccchhhhhHHHHHHHHHHH
Confidence            56665577777777654322110                00111111100011112467889999999999984333333


Q ss_pred             c---------------C--CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC-------CC
Q 021862          238 I---------------G--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-------GH  293 (306)
Q Consensus       238 l---------------g--~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~-------~~  293 (306)
                      -               +  +++..+ .||.++.| |||.|++. .+++++++.|. |||++||++.-+.++       +.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~i~~~~l-~GL~~~~w-PGR~qil~-~~~~~~~llDG-AHt~eSaea~~~w~~~~~~~~~~~  366 (496)
T KOG2525|consen  291 IQNGRVAEGVLDALQTSGLIPPAFL-SGLASTDW-PGRLQILE-YGRGVTWLLDG-AHTKESAEACAKWFRKAVRGLKKL  366 (496)
T ss_pred             HhcCcccccCCCccccccCCCHHHh-cchhhccC-CCceEEEe-cCCCcEEEecC-CCCHHHHHHHHHHHHHHhccCCCc
Confidence            0               1  444444 69999997 99999996 35888899997 999999999877662       22


Q ss_pred             c-EEEEECCCCC
Q 021862          294 K-CVILLGGQAK  304 (306)
Q Consensus       294 ~-~i~v~G~~~~  304 (306)
                      + +|++|-=+++
T Consensus       367 ~~~illfn~t~~  378 (496)
T KOG2525|consen  367 TSLILLFNCTSD  378 (496)
T ss_pred             cceEEEEEecCC
Confidence            2 4666644443

>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family

Probab=98.75  E-value=8e-09  Score=76.80  Aligned_cols=47  Identities=28%  Similarity=0.397  Sum_probs=38.8

Q ss_pred             CCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc----CCCcEEEEECCCC
Q 021862          255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQA  303 (306)
Q Consensus       255 ~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~----~~~~~i~v~G~~~  303 (306)
                      +|||||++. ..+++.||+| |+|||+|++++++++    +++|+++|+|.|.
T Consensus         1 vpgR~e~v~-~~~~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~   51 (91)
T PF02875_consen    1 VPGRMEVVR-EPNGPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGAMG   51 (91)
T ss_dssp             ETTSSEEEE-EETTEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBT
T ss_pred             CCCCcEEEe-eCCCcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEcccc
Confidence            389999997 4678999999 699999999999987    4689999999653

; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.55  E-value=0.084  Score=47.36  Aligned_cols=118  Identities=17%  Similarity=0.195  Sum_probs=71.8

Q ss_pred             CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccC-------CChhhhh-hhhcccc-------CC----------
Q 021862           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN-------LGNPLSE-AAFHCIA-------LP----------   93 (306)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~-------~g~~~~~-~~~~~~~-------~~----------   93 (306)
                      .+..+|+|||+.  ||||...-|..-|.+.|++|++..-       -|..+.. ..++.+.       ++          
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl  128 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL  128 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence            467799999996  6999999999999999999864221       0111111 0111111       00          


Q ss_pred             ----------CCCCCCcEEEEEec-ccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEe
Q 021862           94 ----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (306)
Q Consensus        94 ----------~~~~~~~~~V~E~~-~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n  162 (306)
                                .....+|+.++|.. .||.+..-. --.|+.+++.+.     -  .=+++-..|..++.-   +..+|+|
T Consensus       129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~-~~aDt~~~v~~p-----g--~GD~~Q~iK~GimEi---aDi~vIN  197 (323)
T COG1703         129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVDIA-NMADTFLVVMIP-----G--AGDDLQGIKAGIMEI---ADIIVIN  197 (323)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh-hhcceEEEEecC-----C--CCcHHHHHHhhhhhh---hheeeEe
Confidence                      11345899999987 466554322 124655555442     1  223445567777663   6789999


Q ss_pred             CCChhhH
Q 021862          163 FGNQHLN  169 (306)
Q Consensus       163 ~dd~~~~  169 (306)
                      ..|..-.
T Consensus       198 KaD~~~A  204 (323)
T COG1703         198 KADRKGA  204 (323)
T ss_pred             ccChhhH
Confidence            9885543

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=92.64  E-value=1.1  Score=41.22  Aligned_cols=36  Identities=28%  Similarity=0.312  Sum_probs=30.3

Q ss_pred             CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (306)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g   76 (306)
                      .+..+|+|+|..  ||||++..+...|.+.|+++++.+
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~   91 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA   91 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            356799999986  799999999999999999886433

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=92.60  E-value=0.65  Score=33.39  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=24.8

Q ss_pred             EEEecC--CChhhHHHHHHHHHHhcCCCcccc
Q 021862           46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG   75 (306)
Q Consensus        46 I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~   75 (306)
                      +.++|.  .||||++..+...|.+.|+++...
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~   33 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLI   33 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            556655  699999999999999999888544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC

Probab=92.12  E-value=0.15  Score=44.46  Aligned_cols=33  Identities=18%  Similarity=0.406  Sum_probs=29.3

Q ss_pred             EEEEecCCChhhHHHHHHHHHHhcCCCcccccC
Q 021862           45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (306)
Q Consensus        45 ~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~   77 (306)
                      +|+|+|.-||||+..-|..-|+..|+++.+..+
T Consensus         1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTT   33 (232)
T TIGR03172         1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTT   33 (232)
T ss_pred             CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence            589999999999999999999999999865443

This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.

>PRK15453 phosphoribulokinase; Provisional

Probab=90.46  E-value=0.39  Score=43.09  Aligned_cols=29  Identities=28%  Similarity=0.398  Sum_probs=24.7

Q ss_pred             CCCcEEEEecCC--ChhhHHHHHHHHHHhcC
Q 021862           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLG   69 (306)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g   69 (306)
                      ++.++|+|||+.  ||||+++.+.++|...+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~   33 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRREN   33 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            467899999986  79999999999997654

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=89.65  E-value=0.38  Score=39.48  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             CcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccC
Q 021862           43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN   77 (306)
Q Consensus        43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~   77 (306)
                      +++++|+|.+  ||||...=|-..|++.|+++++.-.
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH   38 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKH   38 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence            4799999984  8999999999999999999965443

>COG4240 Predicted kinase [General function prediction only]

Probab=89.22  E-value=0.54  Score=40.74  Aligned_cols=52  Identities=19%  Similarity=0.210  Sum_probs=38.3

Q ss_pred             HHhcCCeeeehHHHHHhhCCCCCcEEEEecC--CChhhHHHHHHHHHHhcC-CCcc
Q 021862           21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNHLG-IEAF   73 (306)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT--~GKTTt~~ll~~iL~~~g-~~~~   73 (306)
                      ++...++.+.+++-.++.. .+.-+++|.|.  .||||++..|..+|.+.| ++++
T Consensus        29 ~~dl~Lpll~Kiap~~qe~-grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~   83 (300)
T COG4240          29 AQDLHLPLLAKIAPWAQER-GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTA   83 (300)
T ss_pred             HHHHHHHHHHhhhhhhhhc-CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceE
Confidence            4444555666655555455 45669999997  579999999999999998 4554

>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]

Probab=88.77  E-value=0.53  Score=40.74  Aligned_cols=31  Identities=35%  Similarity=0.483  Sum_probs=28.0

Q ss_pred             CcEEEEecCC---ChhhHHHHHHHHHHhcCCCcc
Q 021862           43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF   73 (306)
Q Consensus        43 ~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~   73 (306)
                      ++.+.||||.   |||.+++.|.+.|+++|+++.
T Consensus         2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~   35 (223)
T COG0132           2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVA   35 (223)
T ss_pred             CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeE
Confidence            4689999995   999999999999999999874

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=88.68  E-value=0.85  Score=40.59  Aligned_cols=41  Identities=27%  Similarity=0.427  Sum_probs=32.4

Q ss_pred             CCCcEEEEe---cCCChhhHHHHHHHHHHhcCCCccc-ccCCChh
Q 021862           41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV-GGNLGNP   81 (306)
Q Consensus        41 ~~~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~-~g~~g~~   81 (306)
                      ...++|+||   |--||||++..|+..|.+.|.+|.+ -.+...|
T Consensus       101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~  145 (274)
T TIGR03029       101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDP  145 (274)
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence            467899999   6679999999999999999999853 3444333

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=88.36  E-value=0.59  Score=44.34  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=29.9

Q ss_pred             CCcEEEEe---cCCChhhHHHHHHHHHHhcCCCcccc
Q 021862           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (306)
Q Consensus        42 ~~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~~   75 (306)
                      +.++|+|+   |-.|||||+.-|++.|...|++|.+.
T Consensus       120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI  156 (405)
T PRK13869        120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV  156 (405)
T ss_pred             CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence            45899998   88889999999999999999999643

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=88.20  E-value=0.62  Score=43.94  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=30.1

Q ss_pred             CCcEEEEe---cCCChhhHHHHHHHHHHhcCCCcccc
Q 021862           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (306)
Q Consensus        42 ~~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~~   75 (306)
                      +.++|+|+   |-.|||||+.-|++.|...|++|.+.
T Consensus       105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI  141 (387)
T PHA02519        105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI  141 (387)
T ss_pred             CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence            46799999   88889999999999999999999654

>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=88.17  E-value=0.22  Score=48.26  Aligned_cols=95  Identities=24%  Similarity=0.233  Sum_probs=63.7

Q ss_pred             CCCcEEEEecCCChhhHHHHHHHHHHhcCCCc-ccccCCChhhhhhhhccccCCCCCCCCcEEEEEeccc---ccccCCc
Q 021862           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QMEIPNK  116 (306)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~-~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~---~~~~~~~  116 (306)
                      ...++|.|+|++||++++.+.-..+.....++ +..|+.|..-....+..+... ....+.++..|..+-   ..+ ...
T Consensus        62 ~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~-~g~~~~~~gT~g~~~~~~~~~-~~~  139 (475)
T COG0769          62 AGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKK-LGKKTALIGTEGDELSPGILE-PTG  139 (475)
T ss_pred             cCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHHHh-cCCceEEEEEEeeeccCCccc-ccC
Confidence            35669999999999999999999988854554 556776655444433322221 233455666666533   222 222


Q ss_pred             eecccEEEEecCChhhhhccC
Q 021862          117 YFCPTVSVVLNLTPDHLERHK  137 (306)
Q Consensus       117 ~~~p~i~viTni~~dH~~~~g  137 (306)
                      ...|+...++|+..|+++..+
T Consensus       140 ~tTP~~~~l~~~~~~~~d~~~  160 (475)
T COG0769         140 LTTPEALDLQNLLRDLLDRGA  160 (475)
T ss_pred             CCCccHHHHHHHHHHHHHcCC
Confidence            368999999999999999887

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=88.06  E-value=0.62  Score=41.49  Aligned_cols=31  Identities=26%  Similarity=0.394  Sum_probs=26.2

Q ss_pred             cEEEEe--cCCChhhHHHHHHHHHHhcCCCccc
Q 021862           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        44 ~~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ++|+|+  |=.|||||+.-|+..|.+.|++|.+
T Consensus         2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVll   34 (273)
T PRK13232          2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILL   34 (273)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEE
Confidence            566666  4568999999999999999999964

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=87.85  E-value=0.58  Score=39.40  Aligned_cols=27  Identities=37%  Similarity=0.679  Sum_probs=23.7

Q ss_pred             EEEEecC--CChhhHHHHHHHHHHhcCCC
Q 021862           45 ILAVTGT--NGKSTVVTFVGQMLNHLGIE   71 (306)
Q Consensus        45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~   71 (306)
                      +|+|+|-  .||||++..|...|.+.|..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~   29 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence            5888884  68999999999999998876

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=87.58  E-value=0.69  Score=43.61  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=30.4

Q ss_pred             CCcEEEEe---cCCChhhHHHHHHHHHHhcCCCcccc
Q 021862           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (306)
Q Consensus        42 ~~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~~   75 (306)
                      +.++|+|+   |-.|||||+.-|++.|...|++|.+.
T Consensus       105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI  141 (388)
T PRK13705        105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV  141 (388)
T ss_pred             CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence            46799999   88899999999999999999999654

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=87.52  E-value=0.7  Score=42.47  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=30.3

Q ss_pred             CCcEEEE----ecCCChhhHHHHHHHHHHhcCCCcccc
Q 021862           42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFVG   75 (306)
Q Consensus        42 ~~~~I~V----tGT~GKTTt~~ll~~iL~~~g~~~~~~   75 (306)
                      ..++|.|    .|-.|||+++.+|...|++.|+++++.
T Consensus        48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~il   85 (325)
T PRK00652         48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVV   85 (325)
T ss_pred             CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence            4679988    899999999999999999999998643

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=87.27  E-value=1.1  Score=37.90  Aligned_cols=34  Identities=26%  Similarity=0.443  Sum_probs=28.6

Q ss_pred             CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCccc
Q 021862           41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      .+.++|+|++++   ||||++..|+..|.+.|+++.+
T Consensus        15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVll   51 (204)
T TIGR01007        15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLL   51 (204)
T ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            357889988554   7999999999999999999854

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=86.92  E-value=0.66  Score=38.39  Aligned_cols=25  Identities=40%  Similarity=0.727  Sum_probs=19.8

Q ss_pred             EEEEecCC--ChhhHHHHHHHHHHhcCCCcc
Q 021862           45 ILAVTGTN--GKSTVVTFVGQMLNHLGIEAF   73 (306)
Q Consensus        45 ~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~   73 (306)
                      .|+||||.  ||||++..|+    ..|+++.
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~----~lg~~~i   28 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR----ELGYKVI   28 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH----HhCCcee
Confidence            69999996  6999998877    5567663

>COG2403 Predicted GTPase [General function prediction only]

Probab=85.77  E-value=0.82  Score=42.32  Aligned_cols=32  Identities=34%  Similarity=0.534  Sum_probs=28.8

Q ss_pred             CCcEEEEecCC---ChhhHHHHHHHHHHhcCCCcc
Q 021862           42 SIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF   73 (306)
Q Consensus        42 ~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~   73 (306)
                      ..|+|+||||.   |||++++++.++|++.|+++.
T Consensus       125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~  159 (449)
T COG2403         125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVC  159 (449)
T ss_pred             cCceEEEEEeccccchhHHHHHHHHHHHHcCCceE
Confidence            46799999984   999999999999999999974

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=85.74  E-value=0.99  Score=40.20  Aligned_cols=31  Identities=29%  Similarity=0.333  Sum_probs=25.6

Q ss_pred             cEEEEe--cCCChhhHHHHHHHHHHhcCCCccc
Q 021862           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        44 ~~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ++|+|+  |-.|||||+--|++.|.+.|++|.+
T Consensus         2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLl   34 (274)
T PRK13235          2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMV   34 (274)
T ss_pred             CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEE
Confidence            456666  4557999999999999999999864

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=85.41  E-value=1.2  Score=40.22  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=23.4

Q ss_pred             CCcEEEEecCC--ChhhHHHHHHHHHHhc
Q 021862           42 SIKILAVTGTN--GKSTVVTFVGQMLNHL   68 (306)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~   68 (306)
                      ...+|+|+|.+  ||||++++|..+|...
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~   89 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQALLSRW   89 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            45699999987  7999999999999853

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=85.36  E-value=1.2  Score=39.56  Aligned_cols=31  Identities=23%  Similarity=0.343  Sum_probs=27.1

Q ss_pred             CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCC
Q 021862           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIE   71 (306)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~   71 (306)
                      +...+|+|+|+.  |||||++.+..+|+..+..
T Consensus        80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~  112 (283)
T COG1072          80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPES  112 (283)
T ss_pred             CCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence            345699999995  8999999999999998876

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=85.33  E-value=1.1  Score=39.06  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=28.4

Q ss_pred             CcEEEEec--CCChhhHHHHHHHHHHhcCCCcccc
Q 021862           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (306)
Q Consensus        43 ~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~~   75 (306)
                      +++|.|+|  -.||||+..-|...|++.|+++++.
T Consensus         1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi   35 (229)
T PRK14494          1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA   35 (229)
T ss_pred             CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence            36899999  7899999998899999999998654

>PHA02518 ParA-like protein; Provisional

Probab=85.03  E-value=1.1  Score=37.76  Aligned_cols=30  Identities=37%  Similarity=0.496  Sum_probs=24.8

Q ss_pred             EEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862           45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        45 ~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      +|+|+   |-.||||++..|+..|...|++|.+
T Consensus         2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vll   34 (211)
T PHA02518          2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLL   34 (211)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            45554   6678999999999999999999864

>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]

Probab=84.98  E-value=1.1  Score=37.07  Aligned_cols=14  Identities=36%  Similarity=0.588  Sum_probs=12.3

Q ss_pred             hcCCCCCCeeeEEe
Q 021862          250 EILRTPPHRMQIVH  263 (306)
Q Consensus       250 ~~~~~~~gR~e~~~  263 (306)
                      ++++|++||++++=
T Consensus        61 ~k~RPL~gRiNiVL   74 (190)
T KOG1324|consen   61 EKFRPLPGRINVVL   74 (190)
T ss_pred             cccCCCCCceEEEE
Confidence            56899999999984

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

Probab=84.77  E-value=0.93  Score=39.11  Aligned_cols=38  Identities=32%  Similarity=0.512  Sum_probs=29.8

Q ss_pred             cEEEEe---cCCChhhHHHHHHHHHHhcCCCccc-ccCCChh
Q 021862           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV-GGNLGNP   81 (306)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~-~g~~g~~   81 (306)
                      ++|.||   |-.|||||++-|...|...|.++.+ -..+|.-
T Consensus         3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLR   44 (272)
T COG2894           3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLR   44 (272)
T ss_pred             eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCch
Confidence            467777   7789999999999999999999853 3344543

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=84.65  E-value=1.2  Score=41.91  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=28.4

Q ss_pred             CCcEEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        42 ~~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      +.++|+|+   |-.|||||+.-|++.|...|++|.+
T Consensus       103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLl  138 (387)
T TIGR03453       103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLA  138 (387)
T ss_pred             CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEE
Confidence            45788887   6678999999999999999999864

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=84.51  E-value=1.2  Score=40.76  Aligned_cols=35  Identities=20%  Similarity=0.394  Sum_probs=29.9

Q ss_pred             CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (306)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g   76 (306)
                      +..+|.+.|.|  |||||..=|++.|++.|++|.+..
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA  174 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAA  174 (340)
T ss_pred             CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEe
Confidence            46688888888  599999999999999999986543

>PRK10037 cell division protein; Provisional

Probab=84.25  E-value=1.3  Score=38.92  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=26.5

Q ss_pred             cEEEEe---cCCChhhHHHHHHHHHHhcCCCcccc
Q 021862           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (306)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~~   75 (306)
                      ++|+|.   |=.||||++.-|+..|.+.|++|.+.
T Consensus         2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI   36 (250)
T PRK10037          2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI   36 (250)
T ss_pred             cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence            466666   55689999999999999999998653

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=84.15  E-value=1.3  Score=38.41  Aligned_cols=31  Identities=29%  Similarity=0.488  Sum_probs=26.5

Q ss_pred             cEEEEec---CCChhhHHHHHHHHHHhcCCCccc
Q 021862           44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        44 ~~I~VtG---T~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ++|+|++   -.||||++.-|+..|.+.|++|.+
T Consensus         2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vll   35 (246)
T TIGR03371         2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLA   35 (246)
T ss_pred             cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence            5677765   669999999999999999999864

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=84.01  E-value=1.5  Score=37.34  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=28.4

Q ss_pred             CCCcEEEEe---cCCChhhHHHHHHHHHHh-cCCCccc
Q 021862           41 RSIKILAVT---GTNGKSTVVTFVGQMLNH-LGIEAFV   74 (306)
Q Consensus        41 ~~~~~I~Vt---GT~GKTTt~~ll~~iL~~-~g~~~~~   74 (306)
                      ...++|+|+   |-.||||++..|++.|.. .|++|.+
T Consensus        33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLl   70 (207)
T TIGR03018        33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLL   70 (207)
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence            357899999   577999999999999985 6998854

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=83.86  E-value=1.2  Score=39.78  Aligned_cols=28  Identities=32%  Similarity=0.559  Sum_probs=23.3

Q ss_pred             EEEEecCC--ChhhHHHHHHHHHHhcCCCc
Q 021862           45 ILAVTGTN--GKSTVVTFVGQMLNHLGIEA   72 (306)
Q Consensus        45 ~I~VtGT~--GKTTt~~ll~~iL~~~g~~~   72 (306)
                      +|+|||..  ||||++.-+.++|...|.++
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v   30 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHP   30 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCce
Confidence            58999985  79999999999998776543

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=83.56  E-value=0.9  Score=40.15  Aligned_cols=26  Identities=27%  Similarity=0.423  Sum_probs=23.4

Q ss_pred             ecCCChhhHHHHHHHHHHhcCCCccc
Q 021862           49 TGTNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        49 tGT~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      -|-.||||++.-|++.|.+.|++|.+
T Consensus         9 KGGvGKTT~~~nLA~~La~~G~kVll   34 (270)
T cd02040           9 KGGIGKSTTTQNLSAALAEMGKKVMI   34 (270)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCeEEE
Confidence            57789999999999999999999864

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=83.05  E-value=1.8  Score=35.45  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=27.5

Q ss_pred             CcEEEEec--CCChhhHHHHHHHHHHhcCCCccc
Q 021862           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        43 ~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      +++|+|+|  -.||||...-|...|...|+++++
T Consensus         1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~   34 (159)
T cd03116           1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAV   34 (159)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence            36899999  579999999999999999998854

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK05439 pantothenate kinase; Provisional

Probab=83.02  E-value=1.7  Score=39.59  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=26.6

Q ss_pred             CCCcEEEEecCC--ChhhHHHHHHHHHHhc--CCCcccc
Q 021862           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL--GIEAFVG   75 (306)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~--g~~~~~~   75 (306)
                      ++..+|+|+|+.  ||||++..|..+|...  +.++.+.
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi  122 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELV  122 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEE
Confidence            345699999986  6999999999999864  4444333

>PRK00784 cobyric acid synthase; Provisional

Probab=82.58  E-value=1.5  Score=42.75  Aligned_cols=30  Identities=40%  Similarity=0.479  Sum_probs=26.4

Q ss_pred             cEEEEecC---CChhhHHHHHHHHHHhcCCCcc
Q 021862           44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAF   73 (306)
Q Consensus        44 ~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~   73 (306)
                      +.|.||||   .|||+++..|.+.|++.|++++
T Consensus         3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~   35 (488)
T PRK00784          3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVA   35 (488)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEe
Confidence            56888888   8999999999999999998764

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=82.57  E-value=1.7  Score=38.94  Aligned_cols=31  Identities=29%  Similarity=0.445  Sum_probs=27.1

Q ss_pred             CcEEEEec--CCChhhHHHHHHHHHHhcCCCccc
Q 021862           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        43 ~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      +++|+|+|  ..||||.+.-|...|++.| ++++
T Consensus         1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~   33 (274)
T PRK14493          1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGT   33 (274)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEE
Confidence            46899999  8899999999999999999 6753

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=82.50  E-value=1.1  Score=38.12  Aligned_cols=30  Identities=23%  Similarity=0.268  Sum_probs=21.6

Q ss_pred             EEEecCCChhhHHHHHHHHHHhcCCCccccc
Q 021862           46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG   76 (306)
Q Consensus        46 I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g   76 (306)
                      |+.|| .|||||..=|++-+...|.++.+.+
T Consensus         7 vGptG-vGKTTt~aKLAa~~~~~~~~v~lis   36 (196)
T PF00448_consen    7 VGPTG-VGKTTTIAKLAARLKLKGKKVALIS   36 (196)
T ss_dssp             EESTT-SSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             ECCCC-CchHhHHHHHHHHHhhccccceeec
Confidence            44444 3899999999999998899986544

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK14974 cell division protein FtsY; Provisional

Probab=82.31  E-value=1.9  Score=39.78  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=29.1

Q ss_pred             CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (306)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g   76 (306)
                      +..+|.++|.+  |||||..-+...|.+.|.++.+.+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~  175 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA  175 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence            35689999976  699999999999999998886543

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=81.97  E-value=2.7  Score=37.22  Aligned_cols=115  Identities=18%  Similarity=0.214  Sum_probs=60.2

Q ss_pred             CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccCC-Chhhhhhhh--ccccC----------------C------
Q 021862           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNL-GNPLSEAAF--HCIAL----------------P------   93 (306)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~~-g~~~~~~~~--~~~~~----------------~------   93 (306)
                      .+..+|+|||+.  ||||...-|...|.+.|.++++..-. .+|++...+  +++++                +      
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            466799999996  69999999999999999998642221 112221110  00000                0      


Q ss_pred             ----------CCCCCCcEEEEEec-ccccccCCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEE
Q 021862           94 ----------SSKPKFQVAVVEVS-SYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (306)
Q Consensus        94 ----------~~~~~~~~~V~E~~-~~~~~~~~~-~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~  161 (306)
                                .....+|+.++|.- .||-+..-. ....-+.|++.=.-|-+-.         .|+.+++-   ...+|+
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~---------~KaGimEi---aDi~vV  174 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQA---------IKAGIMEI---ADIFVV  174 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCT---------B-TTHHHH----SEEEE
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHH---------Hhhhhhhh---ccEEEE
Confidence                      11345899999976 466543211 1333455555555554443         35555542   567899


Q ss_pred             eCCChh
Q 021862          162 PFGNQH  167 (306)
Q Consensus       162 n~dd~~  167 (306)
                      |..|..
T Consensus       175 NKaD~~  180 (266)
T PF03308_consen  175 NKADRP  180 (266)
T ss_dssp             E--SHH
T ss_pred             eCCChH
Confidence            987633

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=81.97  E-value=1.3  Score=36.71  Aligned_cols=30  Identities=23%  Similarity=0.375  Sum_probs=24.3

Q ss_pred             EEEEecCCChhhHHHHHHHHHHhcCCCccc
Q 021862           45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        45 ~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      +...-|=.||||++..|+..|.+.|++|.+
T Consensus         3 v~~~kGG~GKTt~a~~la~~la~~g~~Vll   32 (195)
T PF01656_consen    3 VTSGKGGVGKTTIAANLAQALARKGKKVLL   32 (195)
T ss_dssp             EEESSTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred             EEcCCCCccHHHHHHHHHhccccccccccc
Confidence            344557789999999999999999999853

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=81.69  E-value=1.4  Score=38.70  Aligned_cols=29  Identities=28%  Similarity=0.404  Sum_probs=24.7

Q ss_pred             EEEEecCCChhhHHHHHHHHHHhcCCCcc
Q 021862           45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAF   73 (306)
Q Consensus        45 ~I~VtGT~GKTTt~~ll~~iL~~~g~~~~   73 (306)
                      ++++.|-.||||++.-|.+.|...|.+|.
T Consensus         6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vl   34 (243)
T PF06564_consen    6 IVSPKGGVGKTTLTANLAWALARLGESVL   34 (243)
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            44556667899999999999999999984

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=81.55  E-value=1.9  Score=34.41  Aligned_cols=30  Identities=23%  Similarity=0.375  Sum_probs=23.8

Q ss_pred             cEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862           44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (306)
Q Consensus        44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~   73 (306)
                      |+|+|.|-  .||||.++.|-.-|.+.|++++
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~   32 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA   32 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence            47788886  5999999999999999999985

>PRK06696 uridine kinase; Validated

Probab=81.55  E-value=2.9  Score=35.97  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=28.4

Q ss_pred             CCCcEEEEecC--CChhhHHHHHHHHHHhcCCCccc
Q 021862           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        41 ~~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      .+..+|+|+|-  .||||.+..|.+.|...|.++..
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~   55 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIR   55 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            45679999985  68999999999999988876643

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=80.92  E-value=1.8  Score=37.45  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             eeehHHHHHhhCCCCCcEEEEecCC--ChhhHHHHHHHHHHhcCCC
Q 021862           28 VMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLNHLGIE   71 (306)
Q Consensus        28 ~l~~~~~~~~~~~~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~   71 (306)
                      ++.++....... .+..+|+|+|-+  ||||.+..|...|...+-.
T Consensus        19 l~~~~~~~~~~~-~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~   63 (229)
T PRK09270         19 LLRRLAALQAEP-QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL   63 (229)
T ss_pred             HHHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence            344444444333 467799999987  5999999999999986543

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=80.33  E-value=2.3  Score=38.10  Aligned_cols=35  Identities=20%  Similarity=0.408  Sum_probs=28.9

Q ss_pred             CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (306)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g   76 (306)
                      +.++|.++|.+  |||||+.-|+..|...|+++.+..
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~  107 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA  107 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence            45688888865  799999999999999999886544

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK07667 uridine kinase; Provisional

Probab=80.19  E-value=2.6  Score=35.42  Aligned_cols=32  Identities=28%  Similarity=0.394  Sum_probs=27.1

Q ss_pred             CCcEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (306)
Q Consensus        42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~   73 (306)
                      +..+|+|+|-  .||||.+..|.+.|.+.|.++.
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~   49 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFH   49 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence            4479999996  5899999999999998877653

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=80.03  E-value=1.7  Score=35.23  Aligned_cols=26  Identities=31%  Similarity=0.296  Sum_probs=20.7

Q ss_pred             CCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862           42 SIKILAVTGTN--GKSTVVTFVGQMLNH   67 (306)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~   67 (306)
                      -.|-|.||||.  ||||++..|+..+.-
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~~~   33 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKTGL   33 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHhCC
Confidence            34679999996  699999999866543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	306
3lk7_A	451	The Crystal Structure Of Udp-N-Acetylmuramoylalanin		1e-17
1e0d_A	437	Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L		1e-16
2jff_A	445	Crystal Structure Of Murd Ligase In Complex With D-		5e-16
2uag_A	437	Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L		5e-16
2wjp_A	439	Crystal Structure Of Murd Ligase In Complex With D-		5e-16

>pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D- Glutamate (Murd) Ligase From Streptococcus Agalactiae To 1.5a Length = 451

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 140/278 (50%), Gaps = 25/278 (8%)
Query: 28  VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
           V++E++ A  V     +++ +TG+NGK+T  T + ++LN  G    + GN+G P SE   
Sbjct: 99  VLTEVELAYLV--SESQLIGITGSNGKTTTTTXIAEVLNAGGQRGLLAGNIGFPASE--- 153
Query: 88  HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
             +   + K      V E+SS+Q+    K F P ++V+ NL P HL+ H + ++Y   K 
Sbjct: 154 -VVQAANDKDTL---VXELSSFQL-XGVKEFRPHIAVITNLXPTHLDYHGSFEDYVAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
           ++ +   ++   +L F NQ +++ +   +   A I  F    K+D    + K   ++   
Sbjct: 209 NIQNQXSSSDFLVLNF-NQGISKELA--KTTKATIVPFSTTEKVDGAYVQDKQLFYKGEN 265
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
           +  V      ++ V G HN  N A+A ++V  L  G+  + +  T+       HR+Q + 
Sbjct: 266 IXSVD-----DIGVPGSHNVEN-ALATIAVAKL-AGISNQVIRETLSNFGGVKHRLQSLG 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
           + + G+++ +DSK+TN+ AT   L      K +++ GG
Sbjct: 319 K-VHGISFYNDSKSTNILATQKALSGFDNTKVILIAGG 355

>pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 129/284 (45%), Gaps = 65/284 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y   K  ++ +    +VN    
Sbjct: 157 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDA 215
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 216 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 256 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 305
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK 304
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K
Sbjct: 306 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 348

>pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Sulfonamide Inhibitor Length = 445

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 65/284 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y      ++ +    +VN    
Sbjct: 158 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVCVVNADDA 216
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 217 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 257 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 306
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK 304
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K
Sbjct: 307 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 349

>pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 65/284 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y      ++ +    +VN    
Sbjct: 157 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVCVVNADDA 215
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 216 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 256 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 305
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK 304
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K
Sbjct: 306 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 348

>pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Rhodanine Inhibitor Length = 439

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 65/284 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y      ++ +    +VN    
Sbjct: 157 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVCVVNADDA 215
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 216 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 256 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 305
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK 304
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K
Sbjct: 306 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 348

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	306
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	8e-66
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	2e-62
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	7e-20
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	9e-18
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	1e-16
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	2e-16
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	4e-12
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	1e-07
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	1e-05
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	2e-05

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451

 Score =  212 bits (541), Expect = 8e-66
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 25/291 (8%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           +   L+    V++E++ A  V     +++ +TG+NGK+T  T + ++LN  G    + GN
Sbjct: 89  VKKALEKQIPVLTEVELAYLVSES--QLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGN 146

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERH 136
           +G P SE          +       V+E+SS+Q+  +    F P ++V+ NL P HL+ H
Sbjct: 147 IGFPASEVV-------QAANDKDTLVMELSSFQLMGVKE--FRPHIAVITNLMPTHLDYH 197

Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG---AFPGVKIDTE 193
            + ++Y   K ++ + M ++   +L F      E  K  +  +          G  +  +
Sbjct: 198 GSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQDK 257

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
                 E         + + ++ V G HN  NA       +    G+  + +  T+    
Sbjct: 258 QLFYKGEN-------IMSVDDIGVPGSHNVENALATIA--VAKLAGISNQVIRETLSNFG 308

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
              HR+Q +   + G+++ +DSK+TN+ AT   L      K +++ GG  +
Sbjct: 309 GVKHRLQSL-GKVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDR 358

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439

 Score =  203 bits (518), Expect = 2e-62
 Identities = 78/308 (25%), Positives = 133/308 (43%), Gaps = 61/308 (19%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           L+    +G  ++ +++   +       I+A+TG+NGKSTV T VG+M    G+   VGGN
Sbjct: 81  LSAAADAGIEIVGDIELFCREAQA--PIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN 138

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERH 136
           +G P                + ++ V+E+SS+Q+E   +       + +LN+T DH++R+
Sbjct: 139 IGLPALMLL---------DDECELYVLELSSFQLETTSS--LQAVAATILNVTEDHMDRY 187

Query: 137 K-TMKNYALTKCHLFSH---------------MVNTKLGLLPFGNQHLNEAIKGHRFNLA 180
              ++ Y   K  ++ +               +       + FG    +  +  H+    
Sbjct: 188 PFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHL-NHQQGET 246

Query: 181 WIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
           W+    G K+                   L +  MK+ G+HNY NA  A    L    G+
Sbjct: 247 WL-RVKGEKV-------------------LNVKEMKLSGQHNYTNALAALA--LADAAGL 284

Query: 241 DVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
              +    ++ L T    PHR ++V  +  GV W++DSKATN+ +T   L  L     + 
Sbjct: 285 PRASS---LKALTTFTGLPHRFEVV-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLH 340

Query: 298 LL-GGQAK 304
           LL GG  K
Sbjct: 341 LLLGGDGK 348

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498

 Score = 88.4 bits (220), Expect = 7e-20
 Identities = 55/261 (21%), Positives = 96/261 (36%), Gaps = 45/261 (17%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS----- 95
            +++++ VTGTNGK+T    + Q    LG  + V G +GN L         +P+      
Sbjct: 106 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKV-----IPTENTTGS 160

Query: 96  ------------KPKFQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
                               +EVSS    Q  +    F    SV  NL+ DHL+ H  M+
Sbjct: 161 AVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKF--AASVFTNLSRDHLDYHGDME 218

Query: 141 NYALTKCHLFSHMVNTKLGLL----PFGNQHLNEA-------IKGHRFNLAWIGAFPGVK 189
           +Y   K  L+S   +    ++      G + L +        ++ H             +
Sbjct: 219 HYEAAKWLLYS-EHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATE 277

Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
           ++     A+    +     +++ H   +MG  N  N  +A  ++L L  G  +  L  T 
Sbjct: 278 VNYHDSGATIRFSSSWGDGEIESH---LMGAFNVSNLLLALATLLAL--GYPLADLLKTA 332

Query: 250 EILRTPPHRMQIVHRDIQGVT 270
             L+    RM++        T
Sbjct: 333 ARLQPVCGRMEVFTAP-GKPT 352

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452

 Score = 82.2 bits (204), Expect = 9e-18
 Identities = 61/294 (20%), Positives = 124/294 (42%), Gaps = 50/294 (17%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN----PLSEAAFHCIALPSSKP 97
             +++A+TG++GK++V      +L+  G   +  GNL N    P++        L    P
Sbjct: 99  PARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMT--------LLRLTP 150

Query: 98  KFQVAVVEVS-SYQMEIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152
           ++  AV+E+  ++Q EI   +      P  ++V NL   HLE   ++   A  K  +FS 
Sbjct: 151 EYDYAVIELGANHQGEI--AWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG 208

Query: 153 MVNTKLGLLPFGNQHLN---EAIKGHR---FNLAWIGA-FPGVKIDTEAKTASFEVPAVG 205
           +    + ++   N         I   +   F+     + F    I   +    F +    
Sbjct: 209 LPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPT 268

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
               + L    + GRHN  N A+AA ++  + +G  ++A+ + +  L+  P R+  +   
Sbjct: 269 GSVDVLLP---LPGRHNIAN-ALAAAAL-SMSVGATLDAIKAGLANLKAVPGRLFPIQLA 323

Query: 266 IQGVTWVDDS--------KATNLEATCTGLMDLKGHKCVIL-----LGGQAKEC 306
            +    +DDS         A  ++     L ++ G++ +++     LG +++ C
Sbjct: 324 -ENQLLLDDSYNANVGSMTAA-VQV----LAEMPGYRVLVVGDMAELGAESEAC 371

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Length = 535

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 59/262 (22%), Positives = 91/262 (34%), Gaps = 47/262 (17%)

Query: 40  PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSK--- 96
              + ++ +TGT+GK+T    V   L   G  A + G +G  +  A      LPS+    
Sbjct: 143 SERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGA-----DLPSALTTP 197

Query: 97  --PKFQ------------VAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
             P  Q              V+EVSS       +    F   V    NL+ DHL+ H +M
Sbjct: 198 EAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRF--AVGAFTNLSRDHLDFHPSM 255

Query: 140 KNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEAIKGHRF-----NLAWIGAFPGV 188
            +Y   K  LF      +            G + +                A   A    
Sbjct: 256 ADYFEAKASLFDPDSALRARTAVVCIDDDAG-RAMAARAADAITVSAADRPAHWRATDVA 314

Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
             D   +  +   PA GV   + +    + GR+N  N  VA   +  +  GV  E     
Sbjct: 315 PTDAGGQQFTAIDPA-GVGHHIGIR---LPGRYNVANCLVALAILDTV--GVSPEQAVPG 368

Query: 249 IEILRTPPHRMQIVHRDIQGVT 270
           +  +R  P R++ + R  QG  
Sbjct: 369 LREIR-VPGRLEQIDRG-QGFL 388

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Length = 454

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 54/295 (18%), Positives = 91/295 (30%), Gaps = 56/295 (18%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN----PLSEAAFHCIALPSSKP 97
           ++ + AVTG+NGK+T    +  +L+         GN  N    P +        +     
Sbjct: 99  TVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYT--------VLHMPE 150

Query: 98  KFQVAVVEVSSYQM------EIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKC 147
             +  V+E     M      +I          P  ++V  +   HL   K     A  K 
Sbjct: 151 GTEKLVLE-----MGQDHLGDI--HLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKM 203

Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHR---FNLAWIGAFPGVKIDTEAKTASFEVPAV 204
            +   M +  L L P      +      +   F            +     + +F+   +
Sbjct: 204 QIADGMASGSLLLAPADPIVEDYLPIDKKVVRFGQG--AELEITDLVERKDSLTFKANFL 261

Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
                L +      G++N  NA   A  V  L  GV  E +    + L    +R +    
Sbjct: 262 EQALDLPV-----TGKYNATNAM-IASYV-ALQEGVSEEQIRLAFQHLELTRNRTEWKKA 314

Query: 265 DIQGVTWVDDS--------KATNLEATCTGLMDLKGHKCVIL-----LGGQAKEC 306
              G   + D         K   LE       +  G K  +L     LG Q+ + 
Sbjct: 315 A-NGADILSDVYNANPTAMKLI-LETFSAIPANEGGKKIAVLADMKELGDQSVQL 367

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} Length = 326

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 22/245 (8%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVG 75
           +  +L  G   +S   + ++ +     +L V GT+GK+T  + +  +L + G+     +G
Sbjct: 83  VEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIG 142

Query: 76  GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-----YFCPTVSVVLNLTP 130
           G   N    A            +    V+E   Y     +K     ++ P  +V+ NL  
Sbjct: 143 GVPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEF 202

Query: 131 DHLERHKTMKNYALTKCHLFSHMVNTK----LGLLPFGNQHLNEAI-KGHRFNLAWIGAF 185
           DH +    +          F ++V T     L +     Q L + + KG    +   G  
Sbjct: 203 DHADIFADLGAIQTQ----FHYLVRTVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTE 258

Query: 186 PGVKIDTEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDV 242
            G +        SF+V   G    +++     +MGRHN  NA   +AA   +G+DI    
Sbjct: 259 HGWQAGEANADGSFDVLLDGKTAGRVKWD---LMGRHNRMNALAVIAAARHVGVDIQTAC 315

Query: 243 EALNS 247
           EAL +
Sbjct: 316 EALGA 320

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 49/246 (19%), Positives = 77/246 (31%), Gaps = 52/246 (21%)

Query: 47  AVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           AVTGT+GK+T    V  +L HL      F+GG + +              +       V 
Sbjct: 118 AVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNY-----EKGNG----PVVY 168

Query: 105 E----VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
           E       +        F P   ++ N   DHLE +  ++  Y       F  +      
Sbjct: 169 ELDESEEFFS------EFSPNYLIITNARGDHLENYGNSLTRYRSA----FEKISR-NTD 217

Query: 160 LL-----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG-VVSQLQLH 213
           L+          HL +   G                          V   G    +L+L 
Sbjct: 218 LVVTFAEDELTSHLGDVTFG--VKKGTYTL---EMRSASRAEQKAMVEKNGKRYLELKLK 272

Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE----ILRTPPHRMQIVHR-DIQG 268
              V G HN  NA  A +++    +G D+  +   +E    + R    R  I        
Sbjct: 273 ---VPGFHNVLNAL-AVIAL-FDSLGYDLAPVLEALEEFRGVHR----RFSIAFHDPETN 323

Query: 269 VTWVDD 274
           +  +DD
Sbjct: 324 IYVIDD 329

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Length = 524

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 55/277 (19%), Positives = 103/277 (37%), Gaps = 57/277 (20%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEA----AFHCIA-LPSSKPK 98
           +AV GT+GK+T  T +  +L++ GI+A   +GG      ++      F   + L + K  
Sbjct: 125 IAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLGTEKDD 184

Query: 99  FQVA------VVEV----SSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
              +      V+E     S++  +     ++ P  +++ NL  DH +    +        
Sbjct: 185 SDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQTQ-- 242

Query: 148 HLFSHMVNTK----LGLLPFGNQHLNEAI------KGHRFNLAWIGAFPGVKIDTEAKT- 196
             F HMV         ++P     L + +         R ++         + D+  +  
Sbjct: 243 --FHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENS 300

Query: 197 -----------------ASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLD 237
                            + F V          L N  + G HN +NA  A+AA   +G+ 
Sbjct: 301 QAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIGVS 360

Query: 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274
           +     AL++   I R    RM+++  D+  +   DD
Sbjct: 361 VKTACAALSAFAGIKR----RMELIG-DVNDILVFDD 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 45/319 (14%), Positives = 79/319 (24%), Gaps = 106/319 (33%)

Query: 24  SGKRVMSELDFAAQVIPRSIKILAVTGTN------GKSTVVTFVGQMLNHLGIEAFVGGN 77
           SGK  +     A  V   S K+                     V +ML  L         
Sbjct: 161 SGKTWV-----ALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY------Q 208

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME--IPN--------------KYF--- 118
           +    +  + H   +     +      E+          N                F   
Sbjct: 209 IDPNWTSRSDHSSNIKL---RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 119 CPTV------SVVLNLTPDHLERHKTMKNY--ALTKC---HLFSHMVNTKLGLLPFGNQH 167
           C  +       V   L+      H ++ ++   LT      L    ++ +   LP     
Sbjct: 266 CKILLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP----- 319

Query: 168 LNEAIKGHRFNLAWIGA----FPGV-----KIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
             E +  +   L+ I                ++ +  T   E      ++ L+       
Sbjct: 320 -REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES----SLNVLEPAEY--- 371

Query: 219 GRHNYHNAAV---------AALSVL-GLDIGVDVEAL---------------NSTIEI-- 251
            R  +   +V           LS++    I  DV  +                STI I  
Sbjct: 372 -RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 252 ----LRTPPHRMQIVHRDI 266
               L+        +HR I
Sbjct: 431 IYLELKVKLENEYALHRSI 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 45/307 (14%), Positives = 96/307 (31%), Gaps = 79/307 (25%)

Query: 7   FLLEFQLKATGLACLLQSGKRVMS--ELDF---AAQVIPRSIKILAVTGTNGKSTVVTFV 61
           F+  F  K           K ++S  E+D    +   +  ++++     +  +  V  FV
Sbjct: 29  FVDNFDCKDV-----QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 62  GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
            ++L           N    +S         PS   +  +   +      ++  KY    
Sbjct: 84  EEVLRI---------NYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHL-NEAIKGHR---- 176
           +   L L    L   +  KN  +              G+L  G   +  +    ++    
Sbjct: 134 LQPYLKLR-QALLELRPAKNVLI---D----------GVLGSGKTWVALDVCLSYKVQCK 179

Query: 177 --FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234
             F + W+          E            V+  LQ   +      N+      + S  
Sbjct: 180 MDFKIFWLNL--KNCNSPET-----------VLEMLQ--KLLYQIDPNWT-----SRSDH 219

Query: 235 GLDIGVDVEALNSTI-EILRTPPH-RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG 292
             +I + + ++ + +  +L++ P+    +V  ++       ++KA    A      +L  
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV----Q--NAKA--WNA-----FNL-- 264

Query: 293 HKCVILL 299
             C ILL
Sbjct: 265 -SCKILL 270

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 35/248 (14%), Positives = 67/248 (27%), Gaps = 59/248 (23%)

Query: 1   MWMLWLFLLEFQLKATGLACLLQSGKRVMSEL--DFAAQVIPRSIKI----LAVTGTNGK 54
            W  W  +   +L     + L         ++    +  V P S  I    L++   +  
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHIPTILLSLIWFDVI 400

Query: 55  STVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE---VSSYQM 111
            + V     ++N L   + V               I L           +    V  Y  
Sbjct: 401 KSDV---MVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALHRSIVDHYN- 454

Query: 112 EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA 171
               K F        +L P +L+       Y       +SH     +G       HL   
Sbjct: 455 --IPKTFDSD-----DLIPPYLD------QY------FYSH-----IG------HHLKNI 484

Query: 172 IKGHRF--------NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
               R         +  ++      KI  ++   +     +  + QL+ +   +      
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQ----KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 224 HNAAVAAL 231
           +   V A+
Sbjct: 541 YERLVNAI 548

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 52/256 (20%), Positives = 88/256 (34%), Gaps = 60/256 (23%)

Query: 47  AVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           AV GT+GK+T    +  +     ++     GG + +    A      L +S+      + 
Sbjct: 122 AVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAH-----LGASR----YLIA 172

Query: 105 E----VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
           E     +S+       +  P VSVV N+ PDH++ ++   +    T    +   ++    
Sbjct: 173 EADESDASFL------HLQPMVSVVTNMEPDHMDTYEGDFEKMKAT----YVKFLH---- 218

Query: 160 LLPFG--------NQHLNEAIKGHRFNLAWIGAFPG-----VKIDTEAKTASFEVPAVG- 205
            LPF         +  L E +      +   G            +       + V     
Sbjct: 219 NLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNN 278

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE----ILRTPPHRMQI 261
               + L+   V G+HN  NA  AAL+V   + G+  EA+   +       R    R   
Sbjct: 279 ERINVLLN---VPGKHNALNAT-AALAV-AKEEGIANEAILEALADFQGAGR----RFDQ 329

Query: 262 ---VHRDIQGVTWVDD 274
                R    V  VDD
Sbjct: 330 LGEFIRPNGKVRLVDD 345

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Length = 491

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 50/261 (19%), Positives = 88/261 (33%), Gaps = 65/261 (24%)

Query: 47  AVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           A+ GT+GK+T    V  +    G++     GG +      A      L   +      + 
Sbjct: 123 AIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHAR-----LGHGR----YLIA 173

Query: 105 EV----SSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
           E     +S+       +  P V++V N+  DH++ ++   +N   T    F + ++    
Sbjct: 174 EADESDASFL------HLQPMVAIVTNIEADHMDTYQGDFENLKQT----FINFLH---- 219

Query: 160 LLPFG--------NQHLNEAIKGHRFNLAWIGAFPG-----VKIDTEAKTASFEVPAVG- 205
            LPF         +  + E +          G                    F +     
Sbjct: 220 NLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDK 279

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE----ILRTPPHRMQI 261
              ++ L+     GRHN  NAA AA++V   + G+D EA+   +E      R    R   
Sbjct: 280 EPMRVTLN---APGRHNALNAA-AAVAV-ATEEGIDDEAILRALESFQGTGR----RFDF 330

Query: 262 V--------HRDIQGVTWVDD 274
           +        +        VDD
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDD 351

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	306
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	100.0
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	100.0
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	100.0
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	100.0
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	100.0
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	100.0
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	100.0
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	100.0
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	100.0
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	100.0
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	100.0
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	100.0
1jbw_A	428	Folylpolyglutamate synthase; FPGS folate AMPPCP te	100.0
2vos_A	487	Folylpolyglutamate synthase protein FOLC; ligase,	100.0
1o5z_A	442	Folylpolyglutamate synthase/dihydrofolate synthas;	100.0
3nrs_A	437	Dihydrofolate:folylpolyglutamate synthetase; struc	100.0
1w78_A	422	FOLC bifunctional protein; DHFS, dihydrofolate syn	100.0
3mvn_A	163	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M	98.97
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	94.22
3fwy_A	314	Light-independent protochlorophyllide reductase I	93.24
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	92.55
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	92.45
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	91.8
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	91.64
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	90.84
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	90.83
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	90.61
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	89.63
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	89.18
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	88.96
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	88.85
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	88.77
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	88.56
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	86.58
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	86.54
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	86.29
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	85.75
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	85.38
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	85.29
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	85.23
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	84.96
3cwq_A	209	Para family chromosome partitioning protein; alpha	84.11
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	83.54
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	81.98
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	81.64
3end_A	307	Light-independent protochlorophyllide reductase ir	81.1
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	81.08
2obn_A	349	Hypothetical protein; structural genomics, joint c	80.89

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=100.00  E-value=7.2e-56  Score=421.86  Aligned_cols=285  Identities=24%  Similarity=0.373  Sum_probs=244.4

Q ss_pred             eecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhh
Q 021862            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (306)
Q Consensus         3 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~   82 (306)
                      -++|+||+++++||++..|++++++++++++.+++..  +.++|+||||||||||++|++++|++.|.++.+.|++|.|+
T Consensus        74 d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~--~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~~  151 (451)
T 3lk7_A           74 CYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVS--ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPA  151 (451)
T ss_dssp             EEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHC--CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSCH
T ss_pred             CEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChhh
Confidence            3678999999999999999999999999999999887  45999999999999999999999999999999999999988


Q ss_pred             hhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEe
Q 021862           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (306)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n  162 (306)
                      +....       ...+.|++|+|+|+++++.... ++|+++|||||++||+|+|||+|+|+++|.++++.++++|.+|+|
T Consensus       152 ~~~~~-------~~~~~d~~VlE~~s~~l~~~~~-~~p~iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~n  223 (451)
T 3lk7_A          152 SEVVQ-------AANDKDTLVMELSSFQLMGVKE-FRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLN  223 (451)
T ss_dssp             HHHTT-------TCCTTCEEEEECCHHHHTTCSS-CCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEEE
T ss_pred             hhhhh-------cCCCCCEEEEECCccccccccc-cCCCEEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence            75432       1346789999999998876654 899999999999999999999999999999999988889999999


Q ss_pred             CCChhhHHHHhcccccEEEeccCCCe-eeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCC
Q 021862          163 FGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD  241 (306)
Q Consensus       163 ~dd~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~  241 (306)
                      .|||.+..+.+....++++||...+. .....  ...+.+  .+. ..+..++++++|+||++|+++|+  +++..+|++
T Consensus       224 ~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~--~~~-~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~  296 (451)
T 3lk7_A          224 FNQGISKELAKTTKATIVPFSTTEKVDGAYVQ--DKQLFY--KGE-NIMSVDDIGVPGSHNVENALATI--AVAKLAGIS  296 (451)
T ss_dssp             TTSHHHHHHHTTCSSEEEEEESSSCCSSEEEE--TTEEEE--TTE-EEEEGGGSSSCSHHHHHHHHHHH--HHHHHHTCC
T ss_pred             CCcHHHHHHHhhcCCeEEEEccCCCcCCEEEE--CCEEEE--CCc-EEeeccccCCCcHHHHHHHHHHH--HHHHHcCCC
Confidence            99999999888777888999876432 00000  112222  222 11223578999999999999999  899999999


Q ss_pred             HHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862          242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE  305 (306)
Q Consensus       242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~  305 (306)
                      ++.|.++|++|+++|||||++. ..+++.+|+|+|+|||+|+.++++.++++|+++|+||++|+
T Consensus       297 ~~~i~~~L~~f~~~~gR~e~v~-~~~g~~vi~D~~a~np~a~~~al~~~~~~rii~I~g~~~r~  359 (451)
T 3lk7_A          297 NQVIRETLSNFGGVKHRLQSLG-KVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDRG  359 (451)
T ss_dssp             HHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHHTSCGGGEEEEECCSCCS
T ss_pred             HHHHHHHHHhCCCCCCcEEEEe-eeCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            9999999999999999999997 46789999998899999999999999866799999998763

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=100.00  E-value=1.2e-52  Score=398.44  Aligned_cols=278  Identities=27%  Similarity=0.421  Sum_probs=233.8

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~   83 (306)
                      ++|++|++++++|++..|++++++++++++.+++.+  +.++|+||||||||||++|++++|++.|+++++.||+|.|++
T Consensus        67 ~vV~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~--~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gnig~~~~  144 (439)
T 2x5o_A           67 LIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPAL  144 (439)
T ss_dssp             EEEECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESSSBCHH
T ss_pred             EEEeCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecccCHHHH
Confidence            578999999999999999999999999999998887  589999999999999999999999999999999999998886


Q ss_pred             hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhhccccCCeeEEEe
Q 021862           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLP  162 (306)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~-gt~e~~~~~k~~i~~~~~~~~~~V~n  162 (306)
                      ...         .++.|++|+|+|+++++.... ++|+++|||||++||+|+| +|+|+|+++|.++++.   ++.+|+|
T Consensus       145 ~~~---------~~~~d~~VlE~~~~~l~~~~~-~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~---~~~~V~n  211 (439)
T 2x5o_A          145 MLL---------DDECELYVLELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVN  211 (439)
T ss_dssp             HHC---------CTTCCEEEEECCHHHHHTCCC-CCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT---CSEEEEE
T ss_pred             HHh---------CCCCCEEEEECCchhhccccc-CCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcC---CCEEEEe
Confidence            543         123589999999998887654 8999999999999999999 8999999999999873   6899999


Q ss_pred             CCChhhHHHHhcccccEEEeccCCC-ee-eccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCC
Q 021862          163 FGNQHLNEAIKGHRFNLAWIGAFPG-VK-IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV  240 (306)
Q Consensus       163 ~dd~~~~~~~~~~~~~~~~~g~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~  240 (306)
                      .|||.+..+.+. ..++++||.... +. +..+  ...+.+. .+. ..+...+++++|+||++|+++|+  +++..+|+
T Consensus       212 ~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi  284 (439)
T 2x5o_A          212 ADDALTMPIRGA-DERCVSFGVNMGDYHLNHQQ--GETWLRV-KGE-KVLNVKEMKLSGQHNYTNALAAL--ALADAAGL  284 (439)
T ss_dssp             TTCGGGSCSCCC-SSCCEEECSSSSSEEEEEET--TEEEEEE-TTE-EEEEGGGCSCCSHHHHHHHHHHH--HHHHHTTC
T ss_pred             CCCHHHHHHhhc-CCcEEEEeCCCcCcCcEEEE--CCEEEEe-CCc-EEEeehhcCCCCHHHHHHHHHHH--HHHHHcCC
Confidence            999988766544 457788886431 11 1111  1122222 121 11112478999999999999999  89999999


Q ss_pred             CHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCC-CcEEEEECCCCC
Q 021862          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK  304 (306)
Q Consensus       241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~-~~~i~v~G~~~~  304 (306)
                      +++.|.++|++|+++|||||++. ..+++++|+|+|+|||+|++.+++.++. +|+++|+|+++|
T Consensus       285 ~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~vi~Ds~a~np~a~~~al~~l~~~~~~i~v~g~~~k  348 (439)
T 2x5o_A          285 PRASSLKALTTFTGLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK  348 (439)
T ss_dssp             CHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCT
T ss_pred             CHHHHHHHHHhCCCCCCceEEEE-EECCEEEEEeCCCCCHHHHHHHHHhCCcCCCEEEEEcCCCC
Confidence            99999999999999999999996 4567999999889999999999999973 689999999877

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=100.00  E-value=3.3e-51  Score=393.51  Aligned_cols=281  Identities=17%  Similarity=0.244  Sum_probs=227.5

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCC-cccccCCChhh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AFVGGNLGNPL   82 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~-~~~~g~~g~~~   82 (306)
                      ++|+||+|+++||+++.|++++++++++++.+++.. +..++|+||||||||||++|++++|+++|++ +...|+.++.+
T Consensus        84 ~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~~~  162 (494)
T 4hv4_A           84 VVVVSTAISADNPEIVAAREARIPVIRRAEMLAELM-RYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVKAA  162 (494)
T ss_dssp             EEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEETTT
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHh-cCCCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCccccc
Confidence            678999999999999999999999999999998887 4568999999999999999999999999986 33333322222


Q ss_pred             hhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhhccccCCeeEEE
Q 021862           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL  161 (306)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~-gt~e~~~~~k~~i~~~~~~~~~~V~  161 (306)
                      ....        ...+.|++|+|+|+++..+.  .++|+++|||||++||+|+| +|+|+|+++|.++++.+++++.+|+
T Consensus       163 g~~~--------~~~~~d~~VlE~~e~~~s~~--~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~V~  232 (494)
T 4hv4_A          163 GTHA--------RLGSSRYLIAEADESDASFL--HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVM  232 (494)
T ss_dssp             TEEE--------ECCSSSEEEEECCCGGGGGG--GCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEEEE
T ss_pred             cccc--------ccCCCcEEEEEccccccccc--cccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEEEE
Confidence            1111        01357899999997654432  47999999999999999999 8999999999999998888899999


Q ss_pred             eCCChhhHHHHhcccccEEEeccCCC--eeec---cccccceEEEecCCe-eeEEEeeccCCCChhHHHHHHHHHHHHHH
Q 021862          162 PFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVGV-VSQLQLHNMKVMGRHNYHNAAVAALSVLG  235 (306)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~g~~~~--~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~N~l~A~~~a~~  235 (306)
                      |.|||.+..+.+....++++||...+  +...   .+.....+.+...+. ...   ++++++|+||++|+++|+  +++
T Consensus       233 n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a~a  307 (494)
T 4hv4_A          233 CIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIE---VTLNAPGRHNALNAAAAV--AVA  307 (494)
T ss_dssp             ETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEE---EEESSCSHHHHHHHHHHH--HHH
T ss_pred             ECCCHHHHHHHHhcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEEE---EEecCCcHHHHHHHHHHH--HHH
Confidence            99999999998877778899997543  2211   112223344433322 122   478999999999999999  899


Q ss_pred             HHcCCCHHHHHHHhhcCCCCCCeeeEEeecc---------CCEEEEEcCCCCcHHHHHHHHhcc----CCCcEEEEECCC
Q 021862          236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDI---------QGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQ  302 (306)
Q Consensus       236 ~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~---------~~~~ii~D~~~~n~~s~~~al~~~----~~~~~i~v~G~~  302 (306)
                      ..+|++.+.|.++|++|+|++||||++. ..         +++.+|+|+ +|||.+++++++.+    +++|+++|+|+.
T Consensus       308 ~~lgi~~~~i~~~L~~f~g~~~R~e~v~-~~~~~~~~~~~~g~~vi~Dy-aHnp~~i~a~l~al~~~~~~~rii~V~g~~  385 (494)
T 4hv4_A          308 TEEGIEDEDILRALVGFQGTGRRFDFLG-NFPLAPVNGKEGSAMLVDDY-GHHPTEVDATIKAARAGWPDKRIVMLFQPH  385 (494)
T ss_dssp             HHHTCCHHHHHHHHHHCCCBTTSSEEEE-EEESHHHHSCSSEEEEEEEC-CCSHHHHHHHHHHHHHHCTTSEEEEEECCB
T ss_pred             HHcCCCHHHHHHHHHhCCCCCCccEEee-eccccccccCCCCeEEEEeC-CCCHHHHHHHHHHHHhhcCCCeEEEEEcCC
Confidence            9999999999999999999999999996 33         479999995 99999999988865    356899999864

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=4e-50  Score=388.38  Aligned_cols=295  Identities=20%  Similarity=0.248  Sum_probs=220.6

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcc-cccCCC---
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VGGNLG---   79 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~-~~g~~g---   79 (306)
                      ++|+||+|+++||++++|++++++++++.+++++.+.+..++|+||||||||||++|+++||++.|+++. +.|...   
T Consensus        83 ~vV~Spgi~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~~~  162 (524)
T 3hn7_A           83 LVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVN  162 (524)
T ss_dssp             EEEECTTCCTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCCC
T ss_pred             EEEECCCcCCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEeccc
Confidence            6789999999999999999999999999999887532467899999999999999999999999999864 222110   


Q ss_pred             -hhhh--hhhhccccCCCC------CCCCcEEEEEecccccccC---C--ceecccEEEEecCChhhhhccCCHHHHHHH
Q 021862           80 -NPLS--EAAFHCIALPSS------KPKFQVAVVEVSSYQMEIP---N--KYFCPTVSVVLNLTPDHLERHKTMKNYALT  145 (306)
Q Consensus        80 -~~~~--~~~~~~~~~~~~------~~~~~~~V~E~~~~~~~~~---~--~~~~p~i~viTni~~dH~~~~gt~e~~~~~  145 (306)
                       +|-+  ...-........      ..++|++|+|+|+++....   .  ..++|+++|||||++||+|+|||+|+|+++
T Consensus       163 ~T~~nln~~ig~~~~~~~~~~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~gs~e~y~~a  242 (524)
T 3hn7_A          163 TTDTNLQQVFAHSSYLGTEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQTQ  242 (524)
T ss_dssp             SSCHHHHHHTTSSEECCCCCCSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC------CHHHHHHH
T ss_pred             cCchhhhhhhhhHHhhCCCcccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccCCHHHHHHH
Confidence             0000  000000000001      2346899999999775432   1  137999999999999999999999999999


Q ss_pred             HHHhhccccCCeeEEEeCCChhhHHHHhc-ccccEEEeccCC----------------------Ceeec-cccccceEEE
Q 021862          146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFP----------------------GVKID-TEAKTASFEV  201 (306)
Q Consensus       146 k~~i~~~~~~~~~~V~n~dd~~~~~~~~~-~~~~~~~~g~~~----------------------~~~~~-~~~~~~~~~~  201 (306)
                      |.++++.+++++.+|+|.|||.+..+... ...++++||...                      ++... .......|.+
T Consensus       243 K~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f~l  322 (524)
T 3hn7_A          243 FHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTV  322 (524)
T ss_dssp             HHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEEEE
T ss_pred             HHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEEEE
Confidence            99999998889999999999999887653 445788888631                      11110 0011233444


Q ss_pred             ecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHH
Q 021862          202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE  281 (306)
Q Consensus       202 ~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~  281 (306)
                      ...+....+..++++++|+||++|+++|+  +++..+|++.+.|.++|++|+|++||||++. ..+++++|+|+ +|||.
T Consensus       323 ~~~~~~~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~g~~vi~D~-ahnp~  398 (524)
T 3hn7_A          323 SFNDNKEATALVNWSMSGLHNVNNALVAI--AAAYNIGVSVKTACAALSAFAGIKRRMELIG-DVNDILVFDDF-AHHPT  398 (524)
T ss_dssp             EETTEEEEEEEEECSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCCCBTTSSEEEE-EETTEEEEEEC-CCSHH
T ss_pred             EECCccceeEEEEeCCCcHHHHHhHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCceEEEEE-ecCCcEEEEEC-CCCHH
Confidence            33333200224589999999999999999  8999999999999999999999999999996 46789999998 89999


Q ss_pred             HHHHHHhccC----CCcEEEEECCC
Q 021862          282 ATCTGLMDLK----GHKCVILLGGQ  302 (306)
Q Consensus       282 s~~~al~~~~----~~~~i~v~G~~  302 (306)
                      |++++++.++    ++|+++|+|.+
T Consensus       399 ~~~a~l~~l~~~~~~~r~i~V~g~~  423 (524)
T 3hn7_A          399 AITTTLDGAKKKLADRRLWAIIEPR  423 (524)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEEEECC
T ss_pred             HHHHHHHHHHhhcCCCCEEEEECCC
Confidence            9999988763    57899999974

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=7.4e-50  Score=380.54  Aligned_cols=283  Identities=21%  Similarity=0.306  Sum_probs=209.7

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC----C
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----G   79 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~----g   79 (306)
                      .+|.+++++++.|.+.  +++..++|++++..++.. .+.++|+||||||||||++|++++|++.|..+++.|++    |
T Consensus        64 ~vv~~~~~~~~~p~i~--v~~~~~~l~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~t~g~~n~~ig  140 (452)
T 1gg4_A           64 ALLVSRPLDIDLPQLI--VKDTRLAFGELAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIG  140 (452)
T ss_dssp             EEEESSCCSCSSCEEE--ESCHHHHHHHHHHHHHHH-SCCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTH
T ss_pred             EEEECCCcCCCCCEEE--ECCHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeeccccccCCcc
Confidence            3456777765566432  456667788888776543 37899999999999999999999999999666566663    3


Q ss_pred             hhhhhhhhccccCCCCCCCCcEEEEEeccccc-cc--CCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCC
Q 021862           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM-EI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT  156 (306)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~-~~--~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~  156 (306)
                      .|++...        ...++|++|+|+|+++. +.  ....++|+++|||||++||+|+|||+|+|+++|.++++.++++
T Consensus       141 ~p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~  212 (452)
T 1gg4_A          141 VPMTLLR--------LTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN  212 (452)
T ss_dssp             HHHHHTT--------CCTTCSEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTT
T ss_pred             hhHHHHc--------CCCCCcEEEEEeCCCCcchHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccC
Confidence            3432211        14568999999996543 31  2224799999999999999999999999999999999988888


Q ss_pred             eeEEEeCCChhhHHHH--hcccccEEEeccCC---Ceeec---cccccceEEEecCCeeeEEEeeccCCCChhHHHHHHH
Q 021862          157 KLGLLPFGNQHLNEAI--KGHRFNLAWIGAFP---GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV  228 (306)
Q Consensus       157 ~~~V~n~dd~~~~~~~--~~~~~~~~~~g~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~  228 (306)
                      +.+|+|.|||....+.  .. ..++++||...   ++...   .......+.+...+...   .++++++|+||++|+++
T Consensus       213 ~~~V~n~dd~~~~~~~~~~~-~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~---~~~l~l~G~hn~~Nala  288 (452)
T 1gg4_A          213 GIAIMNADNNDWLNWQSVIG-SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSV---DVLLPLPGRHNIANALA  288 (452)
T ss_dssp             CEEEEETTBCCHHHHHHHHT-TSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEE---EEEECSSSTHHHHHHHH
T ss_pred             CEEEEeCCcHHHHHHHHhhc-CCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCEE---EEEeCCCcHHHHHHHHH
Confidence            9999999999887763  22 45788898643   22211   11112234443322222   24789999999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC--CCcEEEEECCCCC
Q 021862          229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAK  304 (306)
Q Consensus       229 A~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~--~~~~i~v~G~~~~  304 (306)
                      |+  +++..+|++++.|.++|++|+++|||||++. ..+++.+|||+|||||+|++.+++.++  .+|+++|+|+|.+
T Consensus       289 A~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~vidDsyahnp~s~~~~l~~l~~~~~~~i~V~G~~~e  363 (452)
T 1gg4_A          289 AA--ALSMSVGATLDAIKAGLANLKAVPGRLFPIQ-LAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAE  363 (452)
T ss_dssp             HH--HHHHHTTCCHHHHHHHHTTCCCCTTSSEEEE-EETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCC
T ss_pred             HH--HHHHHcCCCHHHHHHHHHhCCCCCCCceEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHhccCCEEEEECCccc
Confidence            99  8999999999999999999999999999996 356799999988999999999999874  2688999999854

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=100.00  E-value=6.2e-49  Score=376.44  Aligned_cols=281  Identities=18%  Similarity=0.204  Sum_probs=225.0

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCc-c-cccCCChh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-F-VGGNLGNP   81 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~-~-~~g~~g~~   81 (306)
                      ++|+||+++++||+++.|++++++++++.+.+.+.. ++.++|+||||||||||++|+++||+++|++. . +.|+.+..
T Consensus        80 ~vv~s~~i~~~~~~~~~a~~~~i~vl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~~  158 (475)
T 1p3d_A           80 VVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSA  158 (475)
T ss_dssp             EEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTT
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCccccc
Confidence            578999999999999999999999999999888777 45789999999999999999999999999873 2 45554422


Q ss_pred             hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhhccccCCeeEE
Q 021862           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL  160 (306)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~-gt~e~~~~~k~~i~~~~~~~~~~V  160 (306)
                      -. ..        ...+.|++|+|+|+.+..  ...++|+++|||||++||+|+| +|+|+|+++|.++++.+++++.+|
T Consensus       159 ~~-~~--------~~~~~d~~VlE~~~~~~~--~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~V  227 (475)
T 1p3d_A          159 GK-NA--------HLGASRYLIAEADESDAS--FLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAV  227 (475)
T ss_dssp             TE-EE--------ECCSSSEEEEECCCTTSG--GGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred             cc-cc--------ccCCCCEEEEEecCCcCc--cccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            11 10        123578999999966542  2236899999999999999999 899999999999999888889999


Q ss_pred             EeCCChhhHHHHhcccccEEEeccCCC--eeec---cccccceEEEecCC-eeeEEEeeccCCCChhHHHHHHHHHHHHH
Q 021862          161 LPFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (306)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~g~~~~--~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~~~N~l~A~~~a~  234 (306)
                      +|.|||.+..+.+....++++||...+  +...   .+.....+.+...+ ...   .++++++|+||++|+++|+  ++
T Consensus       228 ~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~  302 (475)
T 1p3d_A          228 MCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERI---NVLLNVPGKHNALNATAAL--AV  302 (475)
T ss_dssp             EETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEE---EEEESSCSHHHHHHHHHHH--HH
T ss_pred             EECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEE---EEEEcCccHHHHHHHHHHH--HH
Confidence            999999988887766667889986532  2211   11112234443222 112   2478999999999999999  89


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCeeeEEeecc---CCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCC
Q 021862          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI---QGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQ  302 (306)
Q Consensus       235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~---~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~  302 (306)
                      +..+|++.+.|.++|++|+|+|||||++....   +++++|+| |||||.+++++++.++    ++|+++|+|++
T Consensus       303 ~~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~~  376 (475)
T 1p3d_A          303 AKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQPH  376 (475)
T ss_dssp             HHHTTCCHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEE-CCCSHHHHHHHHHHHHHHHCSSCEEEEECCB
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCCCCEEEecccccCCCcEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence            99999999999999999999999999996211   37899999 5999999999988763    47899999863

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*

Probab=100.00  E-value=5.6e-50  Score=381.71  Aligned_cols=278  Identities=18%  Similarity=0.177  Sum_probs=214.0

Q ss_pred             cccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC----Ch
Q 021862            5 WLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----GN   80 (306)
Q Consensus         5 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~----g~   80 (306)
                      +|.+++++ +.|.+.  +++..++|+.++..++..+ +.++|+||||||||||++|++++|++.|.++.+.|++    |.
T Consensus        66 vv~~~~~~-~~p~i~--v~~~~~al~~la~~~~~~~-~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~s~g~~n~~ig~  141 (454)
T 2am1_A           66 TLSEKEVS-NHPYIL--VDDVLTAFQSLASYYLEKT-TVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGL  141 (454)
T ss_dssp             EEESSCCC-SSCEEE--CSCHHHHHHHHHHHHHHHH-CCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTHH
T ss_pred             EEECCCCC-CCCEEE--ECCHHHHHHHHHHHHhhCC-CCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeecCCccCcccch
Confidence            45666665 556433  3556667888887665432 6789999999999999999999999999877677763    34


Q ss_pred             hhhhhhhccccCCCCCCCCcEEEEEeccccccc---CCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCe
Q 021862           81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI---PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK  157 (306)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~---~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~  157 (306)
                      |++...        ...++|++|+|+|+++...   ....++|+++|||||++||+|+|||+|+|+++|.++++.+++++
T Consensus       142 p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~~~  213 (454)
T 2am1_A          142 PYTVLH--------MPEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGS  213 (454)
T ss_dssp             HHHHHT--------CCTTCCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTTC
T ss_pred             HHHHhc--------CCCCCcEEEEEcCCCCcchHHHHhCccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhcccCC
Confidence            433221        1457899999999854432   22247899999999999999999999999999999999887889


Q ss_pred             eEEEeCCChhhHHHHhcccccEEEeccCCCeee---ccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHH
Q 021862          158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (306)
Q Consensus       158 ~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~  234 (306)
                      .+|+|.|| ....+.+. ..++++||...+..+   ..+.....+.+...+.     .++++++|+||++|+++|+  ++
T Consensus       214 ~~V~n~dd-~~~~~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~-----~~~l~l~G~hn~~NalaA~--a~  284 (454)
T 2am1_A          214 LLLAPADP-IVEDYLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQ-----ALDLPVTGKYNATNAMIAS--YV  284 (454)
T ss_dssp             EEEEESCG-GGGGGCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSS-----EEEESSCCHHHHHHHHHHH--HH
T ss_pred             EEEEEcHH-HHHHHHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCc-----EEEecCCCHHHHHHHHHHH--HH
Confidence            99999998 77666554 557889986432111   1011112233322111     2478999999999999999  89


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---C---CcEEEEECCCCC
Q 021862          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---G---HKCVILLGGQAK  304 (306)
Q Consensus       235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~---~~~i~v~G~~~~  304 (306)
                      +..+|++++.|.++|++|+|+|||||++. ..+++.+|||+|||||+|++.+++.++   +   +|+++|+|+|.+
T Consensus       285 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~~~~~~i~V~G~~~e  359 (454)
T 2am1_A          285 ALQEGVSEEQIRLAFQHLELTRNRTEWKK-AANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKE  359 (454)
T ss_dssp             HHHTTCCHHHHHHHGGGCCCCCCCSCEEC-CTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCC
T ss_pred             HHHcCCCHHHHHHHHHhCCCccCCeeEEE-CCCCeEEEEeCCCCCHHHHHHHHHHHHhcccccCCCEEEEECCchh
Confidence            99999999999999999999999999996 346788999999999999999999875   2   689999999853

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=100.00  E-value=2e-48  Score=374.28  Aligned_cols=281  Identities=17%  Similarity=0.222  Sum_probs=225.1

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCc-c-cccCCChh
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-F-VGGNLGNP   81 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~-~-~~g~~g~~   81 (306)
                      ++|+||+++++||+++.|++++++++++.+.+.+.. ++.++|+||||||||||++||++||+++|++. . +.|+.+..
T Consensus        81 ~vv~s~~i~~~~p~~~~a~~~~ipvl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~~  159 (491)
T 2f00_A           81 VVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELM-RFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAA  159 (491)
T ss_dssp             EEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTT
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCeeccc
Confidence            578999999999999999999999999999988887 46799999999999999999999999999873 2 45554422


Q ss_pred             hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhhccccCCeeEE
Q 021862           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL  160 (306)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~-gt~e~~~~~k~~i~~~~~~~~~~V  160 (306)
                      -.. .        ...+.|++|+|+|+.+..  ...++|+++|||||++||+|+| +|+|+|+++|.++++.+++++.+|
T Consensus       160 ~~~-~--------~~~~~d~~VlE~~~~~~~--~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~V  228 (491)
T 2f00_A          160 GVH-A--------RLGHGRYLIAEADESDAS--FLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAV  228 (491)
T ss_dssp             TEE-E--------ECCSSSEEEEECCCTTSG--GGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred             ccc-c--------cCCCCCEEEEEeCCCccc--hhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEEE
Confidence            110 0        123578999999965532  2236899999999999999999 899999999999999888889999


Q ss_pred             EeCCChhhHHHHhcccccEEEeccCCC--eeec---cccccceEEEecCC-eeeEEEeeccCCCChhHHHHHHHHHHHHH
Q 021862          161 LPFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (306)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~g~~~~--~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~~~N~l~A~~~a~  234 (306)
                      +|.|||.+..+.+....++++||...+  +...   .+.....+.+...+ ...   .+.++++|+||++|+++|+  ++
T Consensus       229 ~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~  303 (491)
T 2f00_A          229 MCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPM---RVTLNAPGRHNALNAAAAV--AV  303 (491)
T ss_dssp             EETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCE---EEEESSCSHHHHHHHHHHH--HH
T ss_pred             EECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEE---EEEEccchHHHHHHHHHHH--HH
Confidence            999999998888776678889987532  2211   11112234443222 112   2478999999999999999  89


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCeeeEEeecc-------CC-EEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCC
Q 021862          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI-------QG-VTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQ  302 (306)
Q Consensus       235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~-------~~-~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~  302 (306)
                      +..+|++.+.|.++|++|+|+|||||++....       ++ ++||+| |||||.+++++++.++    ++|+++|+|++
T Consensus       304 a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~~  382 (491)
T 2f00_A          304 ATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDD-YGHHPTEVDATIKAARAGWPDKNLVMLFQPH  382 (491)
T ss_dssp             HHHHTCCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEE-CCCSHHHHHHHHHHHHTTCCSSEEEEEECCB
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence            99999999999999999999999999996211       37 899999 5999999999988763    36788999863

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=8.6e-47  Score=360.76  Aligned_cols=270  Identities=19%  Similarity=0.189  Sum_probs=212.1

Q ss_pred             ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCC--CCcEEEEecCCChhhHHHHHHHHHHhcCCCcc--cccCCC
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNLG   79 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~--~~g~~g   79 (306)
                      ++|+||+|+++||++.+|++++++++++.+.+++.. +  +.++|+||||||||||++|++++|+++|++++  +.|+++
T Consensus        74 ~vV~spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~  152 (469)
T 1j6u_A           74 LVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTL-KREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMD  152 (469)
T ss_dssp             EEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCT
T ss_pred             EEEECCCcCCCCHHHHHHHHcCCcEEEHHHHHHHHH-hccCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeec
Confidence            578999999999999999999999999999888777 4  57899999999999999999999999999863  455544


Q ss_pred             hhhhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCC-HHHHHHHHHHhhccccCCee
Q 021862           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKL  158 (306)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt-~e~~~~~k~~i~~~~~~~~~  158 (306)
                      .+-. ..   +.    -.+.| +|+|+++++..  ...++|+++|||||++||+|+||+ +|+|+++|.++++.++   .
T Consensus       153 ~~g~-~~---~~----~~~~~-~V~E~~~~~~~--~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~---~  218 (469)
T 1j6u_A          153 SLEH-GN---YE----KGNGP-VVYELDESEEF--FSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTD---L  218 (469)
T ss_dssp             TSTT-SS---EE----CCSSC-EEEEECTTSGG--GGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCS---E
T ss_pred             ccCc-cc---cc----cCCCC-EEEECCCccCc--cccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCC---E
Confidence            3210 11   11    12356 99999988642  224799999999999999999998 9999999999887543   8


Q ss_pred             EEEeCCChhhHHHHhcccccEEEeccCC-Ceee--cccccc-ceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHH
Q 021862          159 GLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKI--DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (306)
Q Consensus       159 ~V~n~dd~~~~~~~~~~~~~~~~~g~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~  234 (306)
                      +|+|.|||.+..+      ++++||... ++..  ..+... ..+.+...+...  ..++++++|+||++|+++|+  ++
T Consensus       219 ~V~n~dd~~~~~~------~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~~--~~~~l~l~G~hn~~NalaAi--a~  288 (469)
T 1j6u_A          219 VVTFAEDELTSHL------GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRY--LELKLKVPGFHNVLNALAVI--AL  288 (469)
T ss_dssp             EEEETTCTTTGGG------CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEEE--EEEEESSCSHHHHHHHHHHH--HH
T ss_pred             EEEECCChhhccc------eEEEEECCCceEEEEEEECCCCCEEEEEEECCeEE--EEEEecCcCHHHHHHHHHHH--HH
Confidence            9999999876432      567887542 2211  001111 233333233221  23578999999999999999  89


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCeeeEE--eeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEEC
Q 021862          235 GLDIGVDVEALNSTIEILRTPPHRMQIV--HRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLG  300 (306)
Q Consensus       235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~--~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G  300 (306)
                      +..+|++++.|+++|++|+++|||||++  . ..+++.+|+|+ +|||.++++++++++    ++|+++|+|
T Consensus       289 a~~lgi~~~~i~~~L~~f~g~~gR~e~v~~~-~~~g~~vi~D~-aHnp~~~~a~l~al~~~~~~~~i~~I~g  358 (469)
T 1j6u_A          289 FDSLGYDLAPVLEALEEFRGVHRRFSIAFHD-PETNIYVIDDY-AHTPDEIRNLLQTAKEVFENEKIVVIFQ  358 (469)
T ss_dssp             HHHTTCCHHHHHHHHHHCCCCTTSSEEEEEE-TTTTEEEEEEC-CCSHHHHHHHHHHHHHHCSSSEEEEEEC
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCCCcEEEccc-ccCCcEEEEeC-CCCHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence            9999999999999999999999999999  5 45789999995 999999999888763    468899997

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=1.3e-46  Score=362.22  Aligned_cols=251  Identities=22%  Similarity=0.177  Sum_probs=195.2

Q ss_pred             CCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhcc-ccCC-----------CCCCCCcEEEEEeccc
Q 021862           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-----------SSKPKFQVAVVEVSSY  109 (306)
Q Consensus        42 ~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~-----------~~~~~~~~~V~E~~~~  109 (306)
                      +.++|+||||||||||++||+++|++.|+++++.|+.++.+....... .+++           +...++|++|+|+|++
T Consensus       107 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~  186 (498)
T 1e8c_A          107 NLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH  186 (498)
T ss_dssp             SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             cCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeeecCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCc
Confidence            678999999999999999999999999999988888776544321110 0111           1145689999999987


Q ss_pred             ccc--cCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhcccc---cEEEecc
Q 021862          110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF---NLAWIGA  184 (306)
Q Consensus       110 ~~~--~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~---~~~~~g~  184 (306)
                      +++  .+.. ++|+++|||||+.||+|+|||+|+|+++|.++++. ++++.+|+|.||+....+.+....   ++++||.
T Consensus       187 ~l~~~rl~~-~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~-~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~  264 (498)
T 1e8c_A          187 GLVQHRVAA-LKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI  264 (498)
T ss_dssp             HHHTTTTTT-CBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCC
T ss_pred             hhhcccccc-cCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEec
Confidence            654  2332 68999999999999999999999999999999987 567899999999999888765433   6677775


Q ss_pred             CC-----Ceeec---cccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCC
Q 021862          185 FP-----GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP  256 (306)
Q Consensus       185 ~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~~~  256 (306)
                      ..     ++...   .......+.+...+...   .+.++++|+||++|+++|+  +++..+|++++.|.++|++|+|+|
T Consensus       265 ~~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~~~~lGi~~~~i~~~L~~~~~~~  339 (498)
T 1e8c_A          265 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDG---EIESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQPVC  339 (498)
T ss_dssp             CTTTCSEEEEEEEEEECSSCEEEEEEETTCCE---EEEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCCCT
T ss_pred             CCCCCcCCEEEEEEEEcCCceEEEEEECCceE---EEEecCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCC
Confidence            43     22111   11112233333222122   2478999999999999999  899999999999999999999999


Q ss_pred             CeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEECC
Q 021862          257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGG  301 (306)
Q Consensus       257 gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G~  301 (306)
                      ||||++. ..+++++|+| |||||+|++.+++.++   .+|+++|+|.
T Consensus       340 gR~e~v~-~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~r~i~V~G~  385 (498)
T 1e8c_A          340 GRMEVFT-APGKPTVVVD-YAHTPDALEKALQAARLHCAGKLWCVFGC  385 (498)
T ss_dssp             TSSEEEC-CTTSCEEEEE-CCCSHHHHHHHHHHHHHTCSSCEEEEECC
T ss_pred             CceEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCCEEEEECC
Confidence            9999995 3457789999 6999999999999874   4689999984

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*

Probab=100.00  E-value=5.1e-46  Score=360.67  Aligned_cols=252  Identities=22%  Similarity=0.254  Sum_probs=196.6

Q ss_pred             CCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhcc-ccCC-----------CCCCCCcEEEEEeccc
Q 021862           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-----------SSKPKFQVAVVEVSSY  109 (306)
Q Consensus        42 ~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~-----------~~~~~~~~~V~E~~~~  109 (306)
                      +.++|+||||||||||++||+++|++.|+++++.|+.++.+....... ..++           +...++|++|+|+|++
T Consensus       145 ~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~  224 (535)
T 2wtz_A          145 RLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSH  224 (535)
T ss_dssp             SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             cceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence            678999999999999999999999999999988888766554221110 1111           1135789999999987


Q ss_pred             ccc--cCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhcccc--CCeeEEEeCCChhhHHHHhcccccEEEeccC
Q 021862          110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF  185 (306)
Q Consensus       110 ~~~--~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~--~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~  185 (306)
                      +++  .+.. ++|+++|||||+.||+|+|||+|+|+++|.++++..+  +++.+|+|.||+....+.+... ++++||..
T Consensus       225 ~l~~~rl~~-~~p~vaViTNI~~DHld~~gs~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~~-~v~~~g~~  302 (535)
T 2wtz_A          225 ALALGRVDG-TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA-DAITVSAA  302 (535)
T ss_dssp             HHHTTTTTT-CCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHHS-SCEEEESS
T ss_pred             ccccccccc-CCcCEEEEcCCChHHhhhcCCHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhcC-CEEEEecC
Confidence            653  2332 6899999999999999999999999999999998764  5689999999999888776544 78888865


Q ss_pred             C---Ceee---ccc-cccceEEEecCCee-eEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 021862          186 P---GVKI---DTE-AKTASFEVPAVGVV-SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH  257 (306)
Q Consensus       186 ~---~~~~---~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~~~g  257 (306)
                      .   ++..   ..+ .....+.+...+.. .   .+.++++|+||++|+++|+  +++..+|++.+.|.++|++|+ +||
T Consensus       303 ~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~~~-~~g  376 (535)
T 2wtz_A          303 DRPAHWRATDVAPTDAGGQQFTAIDPAGVGH---HIGIRLPGRYNVANCLVAL--AILDTVGVSPEQAVPGLREIR-VPG  376 (535)
T ss_dssp             SSCCSEEEEEEEEETTTEEEEEEECTTSCEE---EEEESCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCC-CTT
T ss_pred             CCcCcEEEEEEEEcCCCCeEEEEEeCCceEE---EEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCC-CCC
Confidence            3   2211   111 12233444332211 2   2478999999999999999  899999999999999999999 899


Q ss_pred             eeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC--CCcEEEEECCCC
Q 021862          258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQA  303 (306)
Q Consensus       258 R~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~--~~~~i~v~G~~~  303 (306)
                      |||++. ..+++++|+| |||||+|++.+++.++  ++|+++|+|.++
T Consensus       377 R~e~v~-~~~~~~viiD-yahNP~s~~aal~~l~~~~~r~i~V~G~~g  422 (535)
T 2wtz_A          377 RLEQID-RGQGFLALVD-YAHKPEALRSVLTTLAHPDRRLAVVFGAGG  422 (535)
T ss_dssp             SSEECC-SSCSSEEEEE-CCCSHHHHHHHHHTTCCSSSCEEEEECCCT
T ss_pred             ceEEEE-cCCCcEEEEE-CCCCHHHHHHHHHHhhCCCCcEEEEECCCC
Confidence            999995 3457778888 6999999999999986  468999999754

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=100.00  E-value=5.7e-45  Score=333.00  Aligned_cols=246  Identities=18%  Similarity=0.205  Sum_probs=193.3

Q ss_pred             eecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcc--cc---cC
Q 021862            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VG---GN   77 (306)
Q Consensus         3 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~--~~---g~   77 (306)
                      -++|+||+|+++||+++.|++++++++++.+.+++.+.++.++|+||||||||||++|++++|++.|.++.  ++   ++
T Consensus        68 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n  147 (326)
T 3eag_A           68 DVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPEN  147 (326)
T ss_dssp             SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETT
T ss_pred             CEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceecc
Confidence            36789999999999999999999999999998887432467899999999999999999999999999864  22   55


Q ss_pred             CChhhhhhhhccccCCCCCCCCcEEEEEecccccccC-----CceecccEEEEecCChhhhhccCCHHHHHHHHHHhhcc
Q 021862           78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP-----NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH  152 (306)
Q Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~-----~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~  152 (306)
                      +|.+.....-..+   ...++.+++|+|+|+++....     ...++|+++|||||++||+|+|||+|+|+++|.++++.
T Consensus       148 ~~~~~~~~~p~~~---~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~~  224 (326)
T 3eag_A          148 FGVSARLPQTPRQ---DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRT  224 (326)
T ss_dssp             SSCSEECCCCCSS---CTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTT
T ss_pred             CCcceecCCcccc---ccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHHh
Confidence            6654221100000   124467899999999765432     12369999999999999999999999999999999998


Q ss_pred             ccCCeeEEEeCCChhhHHHHhc-ccccEEEeccCCCeeecc-ccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHH
Q 021862          153 MVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA  230 (306)
Q Consensus       153 ~~~~~~~V~n~dd~~~~~~~~~-~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~  230 (306)
                      +++++.+|+|.||+.+..+.+. ...++++||...++.... ...+. +.+...+..  +..++++++|+||++|+++|+
T Consensus       225 ~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~g~-f~~~~~~~~--~~~~~l~l~G~hNv~NalaAi  301 (326)
T 3eag_A          225 VPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTEHGWQAGEANADGS-FDVLLDGKT--AGRVKWDLMGRHNRMNALAVI  301 (326)
T ss_dssp             SCTTSEEEEESSCHHHHHHHTTCCCSCEEEESSSSSEEEEEECTTSC-EEEEETTEE--EEEECCCCCSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCHHHHHHHhhccCCCEEEECCCCcEEEEEecCCcE-EEEEECCce--EEEEEecCCcHHHHHHHHHHH
Confidence            8889999999999999887754 455788898644443210 11122 555444432  224589999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHhhcCCCCC
Q 021862          231 LSVLGLDIGVDVEALNSTIEILRTPP  256 (306)
Q Consensus       231 ~~a~~~~lg~~~~~i~~~l~~~~~~~  256 (306)
                        ++|..+|++.+.|.++|++|+|++
T Consensus       302 --a~a~~lGi~~~~i~~~L~~f~gv~  325 (326)
T 3eag_A          302 --AAARHVGVDIQTACEALGAFKNVK  325 (326)
T ss_dssp             --HHHHHHTCCHHHHHHHHHTCCCEE
T ss_pred             --HHHHHcCCCHHHHHHHHHhCCCCC
Confidence              899999999999999999999854

>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A

Probab=100.00  E-value=2e-43  Score=334.16  Aligned_cols=249  Identities=16%  Similarity=0.155  Sum_probs=186.3

Q ss_pred             CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------CChhhhhhhh-----------cccc-----C
Q 021862           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAF-----------HCIA-----L   92 (306)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~g~~~~~~~~-----------~~~~-----~   92 (306)
                      ++.++|+||||||||||++|++++|++.|+++++.++            .|.+++...+           +.+.     .
T Consensus        37 ~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~  116 (428)
T 1jbw_A           37 QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADF  116 (428)
T ss_dssp             GSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             hcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHHHHHHHHHhhcccccCC
Confidence            3678999999999999999999999999999976655            2333221100           0000     0


Q ss_pred             C--------------CCCCCCcEEEEEeccc-ccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhhccccCC
Q 021862           93 P--------------SSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNT  156 (306)
Q Consensus        93 ~--------------~~~~~~~~~V~E~~~~-~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~~i~~~~~~~  156 (306)
                      +              +...++|++|+|+|++ .++... .++|+++|||||+.||+++|| |+|+|+++|.++++   ++
T Consensus       117 ~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~-~~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~---~~  192 (428)
T 1jbw_A          117 NVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTN-VITPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIK---RG  192 (428)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTC-SCCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC---TT
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEEecCCCccccccc-cCCCCEEEECcCcHhhhhhhCCCHHHHHHHHhcccc---CC
Confidence            0              0145789999999976 555544 379999999999999999999 99999999999986   57


Q ss_pred             eeEEEeCCChhhHHHHhc----ccccEEEeccCCCeeecc---ccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHH
Q 021862          157 KLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA  229 (306)
Q Consensus       157 ~~~V~n~dd~~~~~~~~~----~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A  229 (306)
                      +.+|+|.||+.+..+.+.    .+.++++||.+  +....   ......+.+...+...  ..++++++|+||++|+++|
T Consensus       193 ~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~l~G~hn~~Na~aA  268 (428)
T 1jbw_A          193 IPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRD--FSVPKAKLHGWGQRFTYEDQDGRI--SDLEVPLVGDYQQRNMAIA  268 (428)
T ss_dssp             CCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--EEEEEEEECSSSEEEEEEETTEEE--EEEEESCCSTHHHHHHHHH
T ss_pred             ceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCcc--ceeeccccccCCceEEEecCCccc--cccccCCCChhHHHHHHHH
Confidence            899999999987765532    24577888752  22110   0112234443332222  1347899999999999999


Q ss_pred             HHHHHHHHc-C-----CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEEC
Q 021862          230 ALSVLGLDI-G-----VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLG  300 (306)
Q Consensus       230 ~~~a~~~~l-g-----~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G  300 (306)
                      +  +++..+ |     ++.+.|.++|++|+ +|||||++.  .++..++||  +|||+|++.+++.++   .+|+++|+|
T Consensus       269 i--a~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~~~viiD~--AhNp~s~~a~l~~l~~~~~~~~i~V~g  341 (428)
T 1jbw_A          269 I--QTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKIS--DTPLIVIDG--AHNPDGINGLITALKQLFSQPITVIAG  341 (428)
T ss_dssp             H--HHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEE--TTTTEEEEC--CCSHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred             H--HHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEec--CCCcEEEEC--CcCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            9  888888 8     99999999999999 799999995  345566663  789999999999874   368899999


Q ss_pred             CCCC
Q 021862          301 GQAK  304 (306)
Q Consensus       301 ~~~~  304 (306)
                      ++..
T Consensus       342 ~~~~  345 (428)
T 1jbw_A          342 ILAD  345 (428)
T ss_dssp             CSSS
T ss_pred             eCCC
Confidence            8754

>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*

Probab=100.00  E-value=1.5e-42  Score=332.48  Aligned_cols=269  Identities=18%  Similarity=0.185  Sum_probs=194.9

Q ss_pred             CeeeehHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCC------------hhhhhhhh---
Q 021862           26 KRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG------------NPLSEAAF---   87 (306)
Q Consensus        26 ~~~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g------------~~~~~~~~---   87 (306)
                      .+.|.|+..+.+.++   ++.++|+||||||||||++||++||+++|++++++++..            .+++...+   
T Consensus        44 ~~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~  123 (487)
T 2vos_A           44 DPSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVAT  123 (487)
T ss_dssp             CTTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHH
Confidence            346778877766663   467899999999999999999999999999996554421            11111000   


Q ss_pred             -----------c------------cccC----------CCCCCCCcEEEEEeccc-ccccCCceecccEEEEecCChhhh
Q 021862           88 -----------H------------CIAL----------PSSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHL  133 (306)
Q Consensus        88 -----------~------------~~~~----------~~~~~~~~~~V~E~~~~-~~~~~~~~~~p~i~viTni~~dH~  133 (306)
                                 +            ....          .+...++|++|+|+|++ .++..+ .++|+++|||||+.||+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~~d~tn-~i~p~vaVITnI~~DHl  202 (487)
T 2vos_A          124 YREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATN-VINAPVAVITPISIDHV  202 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTC-SSCCSEEEECCCCCCBC
T ss_pred             HHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCcccccc-ccCCCEEEECCcchhhh
Confidence                       0            0000          01145789999999986 445444 47999999999999999


Q ss_pred             hccC-CHHHHHHHHHHhhccc---cCCeeEEEeCCChhhHHHHh----cccccEEEeccCCCee-eccccccceEEEecC
Q 021862          134 ERHK-TMKNYALTKCHLFSHM---VNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVK-IDTEAKTASFEVPAV  204 (306)
Q Consensus       134 ~~~g-t~e~~~~~k~~i~~~~---~~~~~~V~n~dd~~~~~~~~----~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  204 (306)
                      ++|| |+|+|+++|.++++.+   ++++.+|+|.||+.+..++.    ..+.++++||.+.... .........+.+...
T Consensus       203 d~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~d~~~~~~~~~~~g~~~~~~~~  282 (487)
T 2vos_A          203 DYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVLQLQGL  282 (487)
T ss_dssp             SCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTTTBEEEEEEEETTEEEEEEEET
T ss_pred             hhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecCceEEEeeccccCCceEEEecC
Confidence            9999 8999999999999754   67889999999998766432    2245677776421111 000111223444332


Q ss_pred             CeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHc-------CCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCC
Q 021862          205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-------GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA  277 (306)
Q Consensus       205 ~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~l-------g~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~  277 (306)
                      +...  ..+.++++|.||++|+++|+  +++..+       |++.+.|+++|++|+ .|||||++.  . +..+|+|+ +
T Consensus       283 ~~~~--~~~~l~l~G~hn~~Na~aAi--aa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~--~-~~~vi~D~-A  353 (487)
T 2vos_A          283 GGVY--SDIYLPLHGEHQAHNAVLAL--ASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMR--S-APTVFIDA-A  353 (487)
T ss_dssp             TEEE--EEEEECCCSHHHHHHHHHHH--HHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEE--T-TTEEEECC-C
T ss_pred             Cccc--ceeecCCCCHHHHHHHHHHH--HHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEc--C-CCeEEEEC-C
Confidence            2221  12478999999999999999  788877       799999999999999 599999995  3 34778885 9


Q ss_pred             CcHHHHHHHHhccC----CCcEEEEECCCCC
Q 021862          278 TNLEATCTGLMDLK----GHKCVILLGGQAK  304 (306)
Q Consensus       278 ~n~~s~~~al~~~~----~~~~i~v~G~~~~  304 (306)
                      |||+|++.++++++    ++|+++|+|++..
T Consensus       354 HNp~a~~a~l~~l~~~~~~~~~i~V~G~~~d  384 (487)
T 2vos_A          354 HNPAGASALAQTLAHEFDFRFLVGVLSVLGD  384 (487)
T ss_dssp             CSHHHHHHHHHHHHHSCCCSEEEEEECCBTT
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence            99999999988773    3689999999743

>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2

Probab=100.00  E-value=1.4e-42  Score=329.34  Aligned_cols=249  Identities=17%  Similarity=0.187  Sum_probs=180.1

Q ss_pred             CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------CChhhhhhhhc-----------cc-------
Q 021862           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH-----------CI-------   90 (306)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~g~~~~~~~~~-----------~~-------   90 (306)
                      ++.++|+||||||||||++||+++|++.|+++++.++            .|.+++...+.           .+       
T Consensus        50 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (442)
T 1o5z_A           50 LEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFS  129 (442)
T ss_dssp             GSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTC
T ss_pred             hcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCC
Confidence            3678999999999999999999999999999976554            24443322110           00       


Q ss_pred             -cCC----------CCCCCCcEEEEEecc-cccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhhccccCCe
Q 021862           91 -ALP----------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK  157 (306)
Q Consensus        91 -~~~----------~~~~~~~~~V~E~~~-~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~~i~~~~~~~~  157 (306)
                       +.+          +...++|++|+|+|+ +.++.... ++|+++|||||+.||+++|| |+|+|+++|.++++   +++
T Consensus       130 ~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~---~~~  205 (442)
T 1o5z_A          130 PSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNV-VFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIK---ERV  205 (442)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGG-CCCSCEEECCCCC-------CCHHHHHHHHGGGCC---TTC
T ss_pred             CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccccc-CCCCEEEECCccHhhhhhhCcCHHHHHHHHHhhcc---CCc
Confidence             000          013578999999994 55665544 79999999999999999999 99999999999987   578


Q ss_pred             eEEEeCCChhhHHHHhc----ccccEEEeccCCCeeecc---ccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHH
Q 021862          158 LGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA  230 (306)
Q Consensus       158 ~~V~n~dd~~~~~~~~~----~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~  230 (306)
                      .+|+|.||+.+..+.+.    .+.++++|+.+  +....   ......+.+...+ ..  ..++++++|+||++|+++|+
T Consensus       206 ~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~l~G~hn~~NalaAi  280 (442)
T 1o5z_A          206 PLVTGERKREALKVMEDVARKKSSRMYVIDKD--FSVKVKSLKLHENRFDYCGEN-TF--EDLVLTMNGPHQIENAGVAL  280 (442)
T ss_dssp             CEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--BEEEEEECCTTCEEEEEESSS-EE--EEEEESSCSTHHHHHHHHHH
T ss_pred             cEEEcCCChHHHHHHHHHHHHcCCcEEEeCcc--eeeeccccccCCceEEEeccc-cc--cccccCCCcHhHHHHHHHHH
Confidence            99999999987766532    24577788752  21110   1112234443221 11  13478999999999999999


Q ss_pred             HHHHHH--HcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCCCC
Q 021862          231 LSVLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK  304 (306)
Q Consensus       231 ~~a~~~--~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~~~  304 (306)
                        +++.  .+|++++.|.++|++|+ +|||||++.  ..+..+++|+ +|||+|++.+++.++    ++|+++|+|++..
T Consensus       281 --a~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~--~~~~~viiD~-AhNp~s~~~~l~~l~~~~~~~~~i~V~g~~~d  354 (442)
T 1o5z_A          281 --KTLEATGLPLSEKAIREGLKNAK-NLGRFEILE--KNGKMYILDG-AHNPHGAESLVRSLKLYFNGEPLSLVIGILDD  354 (442)
T ss_dssp             --HHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEE--ETTEEEEECC-CCSHHHHHHHHHHHHHHCTTCCEEEEECCCTT
T ss_pred             --HHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEE--cCCCeEEEEC-CcCHHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence              8899  89999999999999999 699999995  3324566674 999999999999874    3689999998754

>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*

Probab=100.00  E-value=6e-41  Score=317.72  Aligned_cols=261  Identities=19%  Similarity=0.169  Sum_probs=186.9

Q ss_pred             eeehHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC------------Chhhhhhhhcc---
Q 021862           28 VMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC---   89 (306)
Q Consensus        28 ~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~------------g~~~~~~~~~~---   89 (306)
                      -|.|+..+.+.++   .+.++|+||||||||||++||++||+++|++++++++.            |.+++...+..   
T Consensus        34 gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~  113 (437)
T 3nrs_A           34 GLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFA  113 (437)
T ss_dssp             CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHH
Confidence            4667776666552   46789999999999999999999999999999766552            22222111000   


Q ss_pred             --------c-cC-----------CCCCCCCcEEEEEecc-cccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHH
Q 021862           90 --------I-AL-----------PSSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC  147 (306)
Q Consensus        90 --------~-~~-----------~~~~~~~~~~V~E~~~-~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~  147 (306)
                              . .+           .+...++|++|+|+|. |.++..+. ++|+++|||||+.||+++|| |+|+|+++|+
T Consensus       114 ~v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggrld~tni-i~p~vaVITnI~~DHld~lG~t~e~ia~~Ka  192 (437)
T 3nrs_A          114 QIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDATNI-VDSDVAAITSIALDHTDWLGYDRESIGREKA  192 (437)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCCCBCCCTTCSHHHHHHHHG
T ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccc-cCCCEEEEcCccHHHHHHhCCcHHHHHHHHH
Confidence                    0 00           0114578999999995 55666554 79999999999999999999 8999999999


Q ss_pred             HhhccccCCeeEEEeCCChh--hHHHHhcccccEEEeccCCCeeec--------cccccceEEEecCCeeeEEEeeccCC
Q 021862          148 HLFSHMVNTKLGLLPFGNQH--LNEAIKGHRFNLAWIGAFPGVKID--------TEAKTASFEVPAVGVVSQLQLHNMKV  217 (306)
Q Consensus       148 ~i~~~~~~~~~~V~n~dd~~--~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l  217 (306)
                      ++++   +++.+|+|.||+.  +...++..+.++++||.+.++...        .+.....+.+...+.  .  ...+++
T Consensus       193 ~I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~l  265 (437)
T 3nrs_A          193 GVFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGER--Q--LTGLPV  265 (437)
T ss_dssp             GGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTTEEEEC--------------CCEEEEETTE--E--EEEECC
T ss_pred             hhcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEecccceeeecccccccccccccCceEEEecCCc--c--eeccCC
Confidence            9987   5789999988764  344555566778888864222111        011122333332221  1  124455


Q ss_pred             C--ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----
Q 021862          218 M--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----  291 (306)
Q Consensus       218 ~--G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----  291 (306)
                      +  |.||+.|+++|+  ++ ..+|++.+.|+++|++++ .|||||++.  .++ .+|+|+ +|||+|++.+++.++    
T Consensus       266 ~~~~~~Na~~Alaa~--~~-~~lgi~~~~i~~gL~~~~-~pGR~e~v~--~~~-~vi~D~-AHNp~a~~all~~l~~~~~  337 (437)
T 3nrs_A          266 PNVPLANAATALAVL--HY-SELPLSDEAIRQGLQAAS-LPGRFQVVS--EQP-LLILDV-AHNPHAARYLVNRLAQVIN  337 (437)
T ss_dssp             CSSCHHHHHHHHHHH--HH-HTCCCCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEECC-CCSHHHHHHHHHHHHHTC-
T ss_pred             cchhHHHHHHHHHHH--HH-hCCCCCHHHHHHHHHhCC-CCCceEEEe--cCC-eEEEEC-CCCHHHHHHHHHHHHhhcc
Confidence            5  889999988887  44 668999999999999999 699999995  333 688885 999999999887765    


Q ss_pred             ------CCcEEEEECCCCC
Q 021862          292 ------GHKCVILLGGQAK  304 (306)
Q Consensus       292 ------~~~~i~v~G~~~~  304 (306)
                            ++|+++|+|.+.+
T Consensus       338 ~~~~~~~~r~i~V~G~~~d  356 (437)
T 3nrs_A          338 PVNASKQGKVRAVVGMLSD  356 (437)
T ss_dssp             -------CCEEEEECCBTT
T ss_pred             hhhhcCCCCEEEEEeCCCC
Confidence                  4689999997654

>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*

Probab=100.00  E-value=8.3e-40  Score=308.84  Aligned_cols=244  Identities=19%  Similarity=0.154  Sum_probs=175.6

Q ss_pred             CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC------------Chhhhhhhh----cc----c-cCC------
Q 021862           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAF----HC----I-ALP------   93 (306)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~------------g~~~~~~~~----~~----~-~~~------   93 (306)
                      .+.++|+||||||||||++|++++|+++|+++++.++.            |.+++...+    +.    . ..+      
T Consensus        47 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~~~~~t~~e~  126 (422)
T 1w78_A           47 PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGDISLTYFEY  126 (422)
T ss_dssp             CSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred             cCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhccCCCChHHH
Confidence            56789999999999999999999999999998654432            111111100    00    0 000      


Q ss_pred             --------CCCCCCcEEEEEecc-cccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhhccccCCeeEEEeC
Q 021862           94 --------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF  163 (306)
Q Consensus        94 --------~~~~~~~~~V~E~~~-~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~~i~~~~~~~~~~V~n~  163 (306)
                              +...++|++|+|+|. +.++... .++|+++|||||+.||+|+|| |+|+|+++|.++++   +++.+|+|.
T Consensus       127 ~t~~a~~~~~~~~~d~~VlEvgl~~~~d~t~-~~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~---~~~~~v~~~  202 (422)
T 1w78_A          127 GTLSALWLFKQAQLDVVILEVGLGGRLDATN-IVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFR---SEKPAIVGE  202 (422)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECSSSSTTSGGG-GSCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC---TTSEEEECC
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCCccccccc-CCCCCEEEECCcChhhhhhhCCCHHHHHHHHHhhcc---CCCcEEEcC
Confidence                    013468999999995 5555444 479999999999999999999 89999999999986   478899988


Q ss_pred             CChhh--HHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHc--C
Q 021862          164 GNQHL--NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI--G  239 (306)
Q Consensus       164 dd~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~l--g  239 (306)
                      |++..  ...+...+.++++||.+  +....+  ...+.+...+...    +.++++ .||++|+++|+  +++..+  |
T Consensus       203 d~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~--~~~~~~~~~~~~~----~~l~l~-~hn~~Na~aAi--a~~~~~~~g  271 (422)
T 1w78_A          203 PEMPSTIADVAQEKGALLQRRGVE--WNYSVT--DHDWAFSDAHGTL----ENLPLP-LVPQPNAATAL--AALRASGLE  271 (422)
T ss_dssp             SSCCHHHHHHHHHHTCEEEEBTTT--BEEEEC--SSCEEEEETTEEE----EEECCC-SSCHHHHHHHH--HHHHHHTCC
T ss_pred             ccHHHHHHHHHHHcCCceEEeCcc--eeeecc--CceEEEecCCccc----ccCCch-HHHHHHHHHHH--HHHHHhCCC
Confidence            77642  22333334577888742  222111  1223333222211    366777 89999999999  777765  8


Q ss_pred             CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCCCC
Q 021862          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK  304 (306)
Q Consensus       240 ~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~~~  304 (306)
                      ++++.|.++|++|+ .|||||++.  .++ .+|+|+ +|||+|++.+++.++    ++|+++|+|++..
T Consensus       272 i~~~~i~~~L~~~~-~~gR~e~~~--~~~-~~i~D~-Ahnp~s~~~~l~~l~~~~~~~~~i~V~g~~~~  335 (422)
T 1w78_A          272 VSENAIRDGIASAI-LPGRFQIVS--ESP-RVIFDV-AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHD  335 (422)
T ss_dssp             CCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEEEC-CCSHHHHHHHHHHHHHSCSCSCEEEEECCBTT
T ss_pred             CCHHHHHHHHHhCC-CCceEEEEe--CCC-eEEEEC-CCCHHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence            99999999999999 599999995  344 566675 999999999988763    4689999998653

>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}

Probab=98.97  E-value=4.5e-10  Score=91.69  Aligned_cols=58  Identities=16%  Similarity=0.180  Sum_probs=35.8

Q ss_pred             HHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc----CCCcEEEEECC
Q 021862          242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGG  301 (306)
Q Consensus       242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~----~~~~~i~v~G~  301 (306)
                      ..+|.++|++|+|++||||++. ..++++||+| |||||.|++++++.+    +++|+++|+|-
T Consensus        11 ~~~i~~~L~~f~gv~~R~E~i~-~~~g~~vi~D-yaHnP~si~a~l~al~~~~~~~riivvf~~   72 (163)
T 3mvn_A           11 VDLGTENLYFQSNAQRRLEVKG-VVNNITVYDD-FAHHPTAITATIDALRAKVGQQRILAVLEP   72 (163)
T ss_dssp             ----------------CCEEEE-EETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEECC
T ss_pred             HHHHHHHHHhCCCCCCCeEEEe-cCCCcEEEEc-CCCCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            4689999999999999999997 4678999999 599999999998876    35789999863

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=94.22  E-value=0.013  Score=55.02  Aligned_cols=64  Identities=16%  Similarity=0.147  Sum_probs=47.6

Q ss_pred             eccccccccc-CchHHHHHHhcCCee--eehHHHHHhhCC---CCCc-EEEEecCCChhhH-HHHHHHHHHhc
Q 021862            4 LWLFLLEFQL-KATGLACLLQSGKRV--MSELDFAAQVIP---RSIK-ILAVTGTNGKSTV-VTFVGQMLNHL   68 (306)
Q Consensus         4 ~~~~~~~~~~-~~p~~~~~~~~~~~~--l~~~~~~~~~~~---~~~~-~I~VtGT~GKTTt-~~ll~~iL~~~   68 (306)
                      +++.+++.+. +++....|+++++++  .++++......|   .+.+ +|+|| |||||++ +++|.+-|.+.
T Consensus        75 lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIs-T~Gksp~la~~ir~~ie~~  146 (457)
T 1pjq_A           75 LAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVS-SGGTSPVLARLLREKLESL  146 (457)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEE-CCCCChHHHHHHHHHHHHh
Confidence            3455777773 677778899999887  677766544433   2334 99999 9999998 88888888864

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=93.24  E-value=0.074  Score=47.35  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=29.7

Q ss_pred             CCCcEEEEec--CCChhhHHHHHHHHHHhcCCCccc
Q 021862           41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        41 ~~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      .+.++|+|+|  -.|||||+.-|+..|.+.|++|.+
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVll   81 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQ   81 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEE
Confidence            4778999995  568999999999999999999964

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=92.55  E-value=0.11  Score=43.92  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=30.3

Q ss_pred             CCCcEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        41 ~~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ++++.|.||||   .|||+++..|.+.|++.|+++..
T Consensus         2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~   38 (228)
T 3of5_A            2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLC   38 (228)
T ss_dssp             TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEE
Confidence            46789999999   59999999999999999999854

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=92.45  E-value=0.12  Score=44.53  Aligned_cols=40  Identities=30%  Similarity=0.434  Sum_probs=31.6

Q ss_pred             HHhhCCCCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCccc
Q 021862           35 AAQVIPRSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        35 ~~~~~~~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ++++..++++.|.||||.   |||+++..|...|++.|+++..
T Consensus        18 ~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~   60 (251)
T 3fgn_A           18 ENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAV   60 (251)
T ss_dssp             ----CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence            344444567899999997   8999999999999999999854

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=91.80  E-value=0.14  Score=41.64  Aligned_cols=32  Identities=28%  Similarity=0.469  Sum_probs=27.7

Q ss_pred             CcEEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862           43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        43 ~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      +++|+|+   |-.||||++..|+..|.+.|+++.+
T Consensus         1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vll   35 (206)
T 4dzz_A            1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAV   35 (206)
T ss_dssp             CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence            4688888   5567999999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=91.64  E-value=0.18  Score=40.64  Aligned_cols=35  Identities=17%  Similarity=0.122  Sum_probs=29.3

Q ss_pred             CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (306)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g   76 (306)
                      .+++|+|+|..  ||||+...|...|...|++++..-
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik   39 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   39 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence            56799999975  999999999999999999986443

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=90.84  E-value=0.31  Score=42.59  Aligned_cols=34  Identities=15%  Similarity=0.268  Sum_probs=29.7

Q ss_pred             CCCcEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        41 ~~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      .+.++|+||++   -||||++.-|+..|.+.|.+|.+
T Consensus        90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLL  126 (286)
T 3la6_A           90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLL  126 (286)
T ss_dssp             TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEE
Confidence            46689999876   48999999999999999999864

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=90.83  E-value=0.18  Score=41.74  Aligned_cols=31  Identities=29%  Similarity=0.187  Sum_probs=27.2

Q ss_pred             cEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862           44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        44 ~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ++|.|+++   .||||++.-|...|.+.|++|.+
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll   35 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG   35 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            57888876   68999999999999999999864

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=90.61  E-value=0.55  Score=41.21  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=30.4

Q ss_pred             CCCcEEEEecC---CChhhHHHHHHHHHHhcCCCcccc
Q 021862           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (306)
Q Consensus        41 ~~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~~   75 (306)
                      ...++|.||++   -||||++.-|+..|.+.|.+|.+.
T Consensus       102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI  139 (299)
T 3cio_A          102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI  139 (299)
T ss_dssp             CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            46689999987   589999999999999999998653

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=89.63  E-value=0.28  Score=41.16  Aligned_cols=34  Identities=12%  Similarity=0.241  Sum_probs=28.4

Q ss_pred             CCCcEEEEec---CCChhhHHHHHHHHHHhc-CCCccc
Q 021862           41 RSIKILAVTG---TNGKSTVVTFVGQMLNHL-GIEAFV   74 (306)
Q Consensus        41 ~~~~~I~VtG---T~GKTTt~~ll~~iL~~~-g~~~~~   74 (306)
                      +..++|+|++   -.||||++..|+..|.+. |++|.+
T Consensus         2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vll   39 (245)
T 3ea0_A            2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLA   39 (245)
T ss_dssp             -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEE
T ss_pred             CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEE
Confidence            3568899984   567999999999999998 999864

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=89.18  E-value=0.54  Score=40.61  Aligned_cols=34  Identities=18%  Similarity=0.393  Sum_probs=29.9

Q ss_pred             CCCcEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        41 ~~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ++.++|.||++   -||||++.-|+..|.+.|.+|.+
T Consensus        80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLL  116 (271)
T 3bfv_A           80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLI  116 (271)
T ss_dssp             CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence            46789999966   68999999999999999999864

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=88.96  E-value=0.29  Score=41.68  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=28.8

Q ss_pred             CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCccc
Q 021862           41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      .+.++|+|++.+   ||||++..|+..|.+.|++|.+
T Consensus         4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll   40 (257)
T 1wcv_1            4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLL   40 (257)
T ss_dssp             -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEE
Confidence            356899998655   7999999999999999999864

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=88.85  E-value=0.37  Score=40.19  Aligned_cols=31  Identities=23%  Similarity=0.414  Sum_probs=26.7

Q ss_pred             cEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862           44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        44 ~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ++|+|+++   .||||++..|+..|.+.|+++.+
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll   36 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLA   36 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            57888765   58999999999999999999864

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=88.77  E-value=0.61  Score=39.80  Aligned_cols=34  Identities=24%  Similarity=0.266  Sum_probs=29.0

Q ss_pred             CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCccc
Q 021862           41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      +..++|+|++++   ||||++.-|+..|.+.|++|.+
T Consensus        16 ~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vll   52 (262)
T 2ph1_A           16 KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGI   52 (262)
T ss_dssp             TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            456789998765   6999999999999999999864

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=88.56  E-value=0.41  Score=40.83  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=29.6

Q ss_pred             CCcEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862           42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        42 ~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ..+.|.||||   .|||+++..|.+.|++.|++++.
T Consensus        20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~   55 (242)
T 3qxc_A           20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTIL   55 (242)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEE
Confidence            4589999999   69999999999999999999854

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=86.58  E-value=0.54  Score=39.90  Aligned_cols=31  Identities=26%  Similarity=0.505  Sum_probs=26.0

Q ss_pred             cEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862           44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        44 ~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ++|+|+++   .||||++..|+..|.+.|++|.+
T Consensus         3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll   36 (263)
T 1hyq_A            3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTI   36 (263)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence            56777654   57999999999999999999864

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=86.54  E-value=0.55  Score=40.71  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=27.0

Q ss_pred             cEEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ++|+|+   |-.||||++.-|+..|.+.|++|.+
T Consensus         5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll   38 (286)
T 2xj4_A            5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAV   38 (286)
T ss_dssp             EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            588898   4568999999999999999999864

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=86.29  E-value=0.64  Score=41.29  Aligned_cols=35  Identities=23%  Similarity=0.504  Sum_probs=29.8

Q ss_pred             CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (306)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g   76 (306)
                      +..+|+|+|.+  |||||+..|...|...|.++.+.+
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid  140 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA  140 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            45689999876  799999999999999998886544

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=85.75  E-value=0.69  Score=39.01  Aligned_cols=31  Identities=29%  Similarity=0.382  Sum_probs=26.3

Q ss_pred             cEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862           44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        44 ~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ++|+|+++   .||||++..|+..|.+.|++|.+
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll   36 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV   36 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence            57888654   57999999999999999999864

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=85.38  E-value=0.33  Score=42.18  Aligned_cols=26  Identities=23%  Similarity=0.459  Sum_probs=23.0

Q ss_pred             ecCCChhhHHHHHHHHHHhcCCCccc
Q 021862           49 TGTNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        49 tGT~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      -|-.||||++..|+..|...|++|.+
T Consensus        45 KGGvGKTT~a~nLA~~la~~G~rVll   70 (298)
T 2oze_A           45 KGGVGKSKLSTMFAYLTDKLNLKVLM   70 (298)
T ss_dssp             SSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCchHHHHHHHHHHHHHhCCCeEEE
Confidence            35689999999999999999999864

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=85.29  E-value=0.78  Score=40.47  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=29.4

Q ss_pred             CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (306)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g   76 (306)
                      ...+|+|+|.+  |||||+..|...+...|.++.+.+
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~  139 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA  139 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence            45689999986  799999999999999888886544

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=85.23  E-value=0.65  Score=39.56  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=27.8

Q ss_pred             CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCccc
Q 021862           41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ++.++|+|++.+   ||||++..|+..|. .|++|.+
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vll   60 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLL   60 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEE
Confidence            467899997765   69999999999999 9999854

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=84.96  E-value=1.2  Score=36.22  Aligned_cols=33  Identities=27%  Similarity=0.438  Sum_probs=27.5

Q ss_pred             CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcc
Q 021862           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF   73 (306)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~   73 (306)
                      .+..+|+|+|.+  ||||++.+|...|...|..+.
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~   54 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVC   54 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence            456799999987  899999999999987766553

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=84.11  E-value=0.85  Score=37.54  Aligned_cols=29  Identities=31%  Similarity=0.519  Sum_probs=24.6

Q ss_pred             EEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862           45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        45 ~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      +|+|+   |-.||||++..|+..|.+.| ++.+
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vll   33 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLL   33 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEE
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEE
Confidence            56665   56699999999999999999 8864

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=83.54  E-value=0.9  Score=41.08  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=29.6

Q ss_pred             CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCcccc
Q 021862           41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG   75 (306)
Q Consensus        41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~~   75 (306)
                      ++.++|+|++.+   ||||++.-|+..|.+.|.+|.+.
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli  178 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL  178 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence            457899998654   79999999999999999998643

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=81.98  E-value=1.5  Score=35.83  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=26.5

Q ss_pred             CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCc
Q 021862           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA   72 (306)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~   72 (306)
                      .+..+|+|.|-+  ||||+..+|..++...|..+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~   53 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPA   53 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCce
Confidence            466799999987  89999999999998755443

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=81.64  E-value=1.3  Score=39.59  Aligned_cols=37  Identities=19%  Similarity=0.269  Sum_probs=30.7

Q ss_pred             CCCcEEEEe---cCCChhhHHHHHHHHHHhcCCCcccccC
Q 021862           41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (306)
Q Consensus        41 ~~~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~~g~   77 (306)
                      +..++|.|+   |-.||||++.-++..|.+.|++|.+...
T Consensus        23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~   62 (349)
T 3ug7_A           23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST   62 (349)
T ss_dssp             SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred             cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            466778887   5568999999999999999999976554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=81.08  E-value=1.4  Score=38.59  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=27.7

Q ss_pred             CCcEEEEecCC--ChhhHHHHHHHHHHh-cCCCccccc
Q 021862           42 SIKILAVTGTN--GKSTVVTFVGQMLNH-LGIEAFVGG   76 (306)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~-~g~~~~~~g   76 (306)
                      +..+|+++|.+  |||||+..|...+.. .|.++.+.+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~  141 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT  141 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            44577777765  899999999999985 898886544

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=80.89  E-value=1.4  Score=39.58  Aligned_cols=107  Identities=11%  Similarity=0.048  Sum_probs=63.2

Q ss_pred             CCcEEEEecC---CChhhHHHHHHHHHHhcCCCcccccCC---------Chhhhhhh-------hccccCCCCCCCCcEE
Q 021862           42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGNL---------GNPLSEAA-------FHCIALPSSKPKFQVA  102 (306)
Q Consensus        42 ~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~~g~~---------g~~~~~~~-------~~~~~~~~~~~~~~~~  102 (306)
                      +.+.|.|+||   -|||+|+..|.+.|++.|+++...++-         |.+.....       .+.+.. ...+++|+.
T Consensus       151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg~~~~~~gi~~Dav~~df~aG~ve~~~~-~~~~~~d~v  229 (349)
T 2obn_A          151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVM-RYGKNYDIL  229 (349)
T ss_dssp             SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHSCSCCGGGSBHHHHHHHHHHHHH-HHTTTCSEE
T ss_pred             cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchhhhhhcCCcchhHHHHHHHhhhHHHHHH-HhccCCCEE
Confidence            4678999998   599999999999999999998643331         11111000       000000 113468999


Q ss_pred             EEEeccc---ccccCC----ceeccc-EEEEecCChhhhhcc-----CCHHHHHHHHHHh
Q 021862          103 VVEVSSY---QMEIPN----KYFCPT-VSVVLNLTPDHLERH-----KTMKNYALTKCHL  149 (306)
Q Consensus       103 V~E~~~~---~~~~~~----~~~~p~-i~viTni~~dH~~~~-----gt~e~~~~~k~~i  149 (306)
                      ++|-..+   ......    ...+|+ +.++...+.-|++.|     ++++.....-..+
T Consensus       230 lVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l  289 (349)
T 2obn_A          230 HIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETV  289 (349)
T ss_dssp             EECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHH
T ss_pred             EEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHH
Confidence            9997633   221100    124777 566666677666433     3666665555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	306
d1p3da3	215	c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine	3e-17
d1gg4a4	214	c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl	6e-16
d2jfga3	204	c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine	9e-14
d1e8ca3	234	c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptid	4e-13
d1j6ua3	207	c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine l	5e-11
d2jfga2	140	c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanin	5e-09
d2gc6a2	296	c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {	1e-04
d1o5za2	296	c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase	2e-04

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 215

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

 Score = 76.8 bits (188), Expect = 3e-17
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 15/213 (7%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
           R    +AV GT+GK+T    +  +     ++                      +     +
Sbjct: 10  RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNG-------GLVKSAGKNAHLGASR 62

Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
             + E         +    P VSVV N+ PDH++ ++   +    T      ++    L 
Sbjct: 63  YLIAEADESDASFLH--LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 120

Query: 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH---NMK 216
           ++   +  L E +      +   G         E    +       V+          + 
Sbjct: 121 VMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLN 180

Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
           V G+HN  N  AA+A     G+     +EAL  
Sbjct: 181 VPGKHNALNATAALAVAKEEGIANEAILEALAD 213

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

 Score = 73.2 bits (178), Expect = 6e-16
 Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 13/213 (6%)

Query: 44  KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +++A+TG++GK++V      +L+  G   +  GNL N +          P          
Sbjct: 3   RVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELG 62

Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
                           P  ++V NL   HLE   ++   A  K  +FS +    + ++  
Sbjct: 63  ANHQGEIA-WTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNA 121

Query: 164 GNQHLNE---AIKGHRFNLAWIGA----FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
            N         I   +       A    F    I   +    F +        + L    
Sbjct: 122 DNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLL---P 178

Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
           + GRHN  N  AA A    +G  +      L +
Sbjct: 179 LPGRHNIANALAAAALSMSVGATLDAIKAGLAN 211

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 204

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 66.7 bits (161), Expect = 9e-14
 Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 19/219 (8%)

Query: 31  ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI 90
           +++   +       I+A+TG+NGKSTV T VG+M    G+   VGGN             
Sbjct: 1   DIELFCREAQ--APIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN---------IGLP 49

Query: 91  ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF 150
           AL     + ++ V+E+SS+Q+E  +       +++             ++ Y   K  ++
Sbjct: 50  ALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIY 109

Query: 151 SHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
            +        +   +  L   I+G        G   G       +  ++       V   
Sbjct: 110 ENAKVC----VVNADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVL-- 163

Query: 211 QLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
            +  MK+ G+HNY N  AA+A     GL     ++AL +
Sbjct: 164 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTT 202

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 234

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

 Score = 65.2 bits (157), Expect = 4e-13
 Identities = 44/229 (19%), Positives = 73/229 (31%), Gaps = 22/229 (9%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA------------AFH 88
            +++++ VTGTNGK+T    + Q    LG  + V G +GN L                  
Sbjct: 3   DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQ 62

Query: 89  CIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
                          +EVSS+ + +          SV  NL+ DHL+ H  M++Y   K 
Sbjct: 63  HELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKW 122

Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
            L+S     +  +            K        +              A+         
Sbjct: 123 LLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGA 182

Query: 208 SQLQLHN-------MKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
           +     +         +MG  N  N   A+A L  LG  +   ++    
Sbjct: 183 TIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAAR 231

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 207

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.9 bits (141), Expect = 5e-11
 Identities = 39/208 (18%), Positives = 61/208 (29%), Gaps = 21/208 (10%)

Query: 44  KILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQV 101
           +  AVTGT+GK+T    V  +L HL      F+GG + +                     
Sbjct: 15  EEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKGN----------- 63

Query: 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161
             V     + E     F P   ++ N   DHLE +        +     S   +  +   
Sbjct: 64  GPVVYELDESEEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVTFA 123

Query: 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
                     +        +           +             +       +KV G H
Sbjct: 124 EDELTSHLGDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLEL------KLKVPGFH 177

Query: 222 NYHN--AAVAALSVLGLDIGVDVEALNS 247
           N  N  A +A    LG D+   +EAL  
Sbjct: 178 NVLNALAVIALFDSLGYDLAPVLEALEE 205

>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 140

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 51.9 bits (123), Expect = 5e-09
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305
           PHR ++V  +  GV W++DSKATN+ +T   L  L     + LL G   +
Sbjct: 3   PHRFEVV-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 51

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Length = 296

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 17/137 (12%), Positives = 38/137 (27%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
           +  + + VTGTNGK +    +  +L   G+   +                  P       
Sbjct: 37  QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALV 96

Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
            AV  V +    +  +     V+    +T       +  +              ++   +
Sbjct: 97  NAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVI 156

Query: 161 LPFGNQHLNEAIKGHRF 177
            P  +     A+   + 
Sbjct: 157 TPVVSVLTEVALDHQKL 173

>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 30/251 (11%), Positives = 62/251 (24%), Gaps = 41/251 (16%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP-------LSEAAFHCIALP 93
              K + + GTNGK +V   V  +L   G       +           L+E       + 
Sbjct: 41  LEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVV 100

Query: 94  SSKPKFQVAVVEVSSYQMEIPNKYFCPTV---------SVVLNLTPDHLERHKTMKNYAL 144
                 +  + E+   ++  P+ +   T          +V + +    L       N   
Sbjct: 101 KIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVF 160

Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR---FNLAWIGAFPGVKIDTEAKTASFEV 201
             C     +       L +  + +     G       L             E        
Sbjct: 161 PLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSS 220

Query: 202 PAVGVVSQLQLHNMKVM----------------------GRHNYHNAAVAALSVLGLDIG 239
               +     +    +                       G H   NA VA  ++    + 
Sbjct: 221 RMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGLP 280

Query: 240 VDVEALNSTIE 250
           +  +A+   ++
Sbjct: 281 LSEKAIREGLK 291

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	306
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	100.0
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	100.0
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	100.0
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	100.0
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	100.0
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	99.98
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	99.97
d1gg4a1	135	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	98.85
d2jfga2	140	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.78
d1j6ua2	151	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	98.26
d1o5za1	137	Folylpolyglutamate synthetase, C-terminal domain {	98.02
d2gc6a1	129	Folylpolyglutamate synthetase, C-terminal domain {	97.96
d1p3da2	152	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.86
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.69
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	95.61
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	92.7
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.51
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	92.46
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	91.57
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	91.18
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	89.56
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.75
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	88.67
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	87.37
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	87.12
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	86.37
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	86.36
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	85.58
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	84.37
d1aoea_	192	Dihydrofolate reductases, eukaryotic type {Yeast (	82.21
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	80.65

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=5.6e-38  Score=267.91  Aligned_cols=204  Identities=18%  Similarity=0.218  Sum_probs=157.2

Q ss_pred             HHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccc-cCCChhhhhhhhccccCCCCCCCCcEEEEEecccccc
Q 021862           34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG-GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME  112 (306)
Q Consensus        34 ~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~-g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~  112 (306)
                      .+.++. +..++|+||||||||||++||+++|++.|+++... |....++....        .....+++|+|+++++..
T Consensus         4 ~L~~~~-r~~~~I~ITGTnGKTTt~~~l~~iL~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~v~E~~~~~~~   74 (215)
T d1p3da3           4 MLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNA--------HLGASRYLIAEADESDAS   74 (215)
T ss_dssp             HHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTTTEEE--------ECCSSSEEEEECCCTTSG
T ss_pred             HHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCceEeeCceeccCcccc--------ccCCCceEEEEcCCcccc
Confidence            344444 45589999999999999999999999999988543 33322222111        123557899999988765


Q ss_pred             cCCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhcccccEEEeccCCCeee-
Q 021862          113 IPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI-  190 (306)
Q Consensus       113 ~~~~~~~p~i~viTni~~dH~~~~-gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~-  190 (306)
                      ...  ++||++|||||++||+|+| +++|+|+++|.++++.++++|.+|+|.||+....+.+....++++||...+... 
T Consensus        75 ~~~--~~p~~~viTNi~~dHld~~~~s~e~~~~~K~~i~~~~~~~g~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~  152 (215)
T d1p3da3          75 FLH--LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYR  152 (215)
T ss_dssp             GGG--CCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHCSEEEEEESSTTCSEE
T ss_pred             cee--EcCCEEEEecccccccccccCCHHHHHHHHHHHHhcCCCCCEEEEeCcchHHHHHHHhcCCceEEEccccccccc
Confidence            543  7999999999999999988 699999999999999999999999999999999998888888999997654211 


Q ss_pred             ----ccccccce-EEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 021862          191 ----DTEAKTAS-FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (306)
Q Consensus       191 ----~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~  253 (306)
                          ........ ...........   +.++++|+||++|+++|+  ++|..+|+++++|.++|++|+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~---~~l~l~G~hn~~N~laAi--a~a~~lGi~~~~i~~~L~~Fk  215 (215)
T d1p3da3         153 IEDYEQTGFQGHYTVICPNNERIN---VLLNVPGKHNALNATAAL--AVAKEEGIANEAILEALADFQ  215 (215)
T ss_dssp             EEEEEEETTEEEEEEECTTCCEEE---EEESSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccceee---EEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence                11111111 11222222233   378999999999999999  899999999999999999986

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.5e-37  Score=258.71  Aligned_cols=201  Identities=27%  Similarity=0.418  Sum_probs=157.8

Q ss_pred             HHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhccccCCCCCCCCcEEEEEeccccc
Q 021862           32 LDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM  111 (306)
Q Consensus        32 ~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~  111 (306)
                      ++.+.+..  +.|+|+||||||||||++||.++|++.|.++++.|+.|.|.....         .++.+++|+|+++++.
T Consensus         2 ~~lf~~~~--~~~vI~VTGT~GKTTt~~~l~~iL~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~V~E~~~~~~   70 (204)
T d2jfga3           2 IELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLL---------DDECELYVLELSSFQL   70 (204)
T ss_dssp             HHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEETTSSCGGGGC---------CTTCCEEEEECCHHHH
T ss_pred             HHHHhhcC--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCcccCCcccccccccc---------cccceEEEEeeccccc
Confidence            56666666  789999999999999999999999999999999999998865432         4567899999998765


Q ss_pred             ccCCceecccEEEEecCChhhhhccCC-HHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhcccccEEEeccCCC-ee
Q 021862          112 EIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG-VK  189 (306)
Q Consensus       112 ~~~~~~~~p~i~viTni~~dH~~~~gt-~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~-~~  189 (306)
                      ..... ++|+++|||||++||+|+|++ ++.+.+.|..+++   +++.+|+|.||+....+. ....++++||.... ..
T Consensus        71 ~~~~~-~~p~i~viTNi~~dHld~~~~~~~~~~~~~~~i~~---~~~~~v~n~dd~~~~~~~-~~~~~~i~~~~~~~~~~  145 (204)
T d2jfga3          71 ETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE---NAKVCVVNADDALTMPIR-GADERCVSFGVNMGDYH  145 (204)
T ss_dssp             HTCCC-CCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGT---TCSEEEEETTCGGGSCTT-CCCTTEEEECSSSSSEE
T ss_pred             ccccc-cccccceeeeeccccccccccHHHHHHHHHHhhhc---cccceeehhhhHHHHHHH-ccCCceEEeeccccchh
Confidence            54443 899999999999999999996 8999999998876   467899999999876653 45667889987532 22


Q ss_pred             eccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 021862          190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (306)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~  253 (306)
                      .........+.+  .+. ..+...+++++|+||++|+++|+  ++|..+|+++++|+++|++|.
T Consensus       146 ~~~~~~~~~~~~--~~~-~~~~~~~~~l~G~hn~~N~laAi--a~a~~lGi~~~~i~~~L~~Ft  204 (204)
T d2jfga3         146 LNHQQGETWLRV--KGE-KVLNVKEMKLSGQHNYTNALAAL--ALADAAGLPRASSLKALTTFT  204 (204)
T ss_dssp             EEEETTEEEEEE--TTE-EEEEGGGCSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHHCC
T ss_pred             hcccccccceee--cCC-ccccccccCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence            221111112222  221 12223468999999999999999  899999999999999999884

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-36  Score=262.05  Aligned_cols=208  Identities=22%  Similarity=0.214  Sum_probs=155.6

Q ss_pred             CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhccc-cCC-----------CCCCCCcEEEEEecc
Q 021862           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI-ALP-----------SSKPKFQVAVVEVSS  108 (306)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~~-~~~-----------~~~~~~~~~V~E~~~  108 (306)
                      +++++|+||||||||||++||.++|+..|+++++.|+.|.+......... .++           ....+++++++|+++
T Consensus         3 ~~~~vI~ITGT~GKTTt~~~l~~iL~~~g~~~~~~gt~g~~~~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~~le~ss   82 (234)
T d1e8ca3           3 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSS   82 (234)
T ss_dssp             GSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             cCCeEEEEECCCcHHHHHHHHHHHHHHCCCCeEEECccccCcCccccccccccccchhHHHHHHHHhhcCCceeeeccCc
Confidence            47899999999999999999999999999999888887665432221110 000           124467899999997


Q ss_pred             ccc-ccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhcccccEEE-eccCC
Q 021862          109 YQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW-IGAFP  186 (306)
Q Consensus       109 ~~~-~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~-~g~~~  186 (306)
                      .+. ......++|+++|||||++||+|+|+++|+|+++|.++++. .+.+.+|+|.||+....+.+.....+.. ++...
T Consensus        83 ~g~~~~~~~~~~p~i~vitNi~~dHld~~~~~e~~~~~K~~i~~~-~~~~~~iin~Dd~~~~~~~~~~~~~~~~~~~~~~  161 (234)
T d1e8ca3          83 HGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI  161 (234)
T ss_dssp             HHHHTTTTTTCBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCC
T ss_pred             cchhhhhhcccccceEEEeeccccchhhhccccceehhhhccccc-cccceeEEecccccchhhhhhhccceeeeecccc
Confidence            544 33333589999999999999999999999999999999986 4568899999999999988776544332 22211


Q ss_pred             Ce-----ee-----ccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 021862          187 GV-----KI-----DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT  254 (306)
Q Consensus       187 ~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~  254 (306)
                      +.     .+     ........+.+...+....   ++++++|+||++|+++|+  ++|+.+|+++++|.++|++|+|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~l~G~hni~N~laAi--ava~~lGi~~~~i~~~l~~fkP  234 (234)
T d1e8ca3         162 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE---IESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQP  234 (234)
T ss_dssp             CTTTCSEEEEEEEEEECSSCEEEEEEETTCCEE---EEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCC
T ss_pred             ccccccccccccccccccccceeeeecCCceEE---EEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCC
Confidence            10     01     1111223344444333333   378999999999999999  8999999999999999999997

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-36  Score=255.78  Aligned_cols=201  Identities=21%  Similarity=0.316  Sum_probs=151.2

Q ss_pred             cEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhccccCCCCCCCCcEEEEEeccccccc---CCceecc
Q 021862           44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI---PNKYFCP  120 (306)
Q Consensus        44 ~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~---~~~~~~p  120 (306)
                      ++|+||||||||||++||++||++.|.++++.|+++.++......    .....+.++.++|+++.+...   ....+.|
T Consensus         3 kvI~VTGTnGKTTt~~mi~~iL~~~g~~~~~~g~~n~~~g~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p   78 (214)
T d1gg4a4           3 RVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTL----LRLTPEYDYAVIELGANHQGEIAWTVSLTRP   78 (214)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTHHHHHH----TTCCTTCSEEEEECCCSSSSHHHHHHHHHCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHHhCCCCEEEeCcccCccccchhh----hhcccccccchhhhhhhhcccccccccccCc
Confidence            699999999999999999999999999999999887766433211    112456788999999654322   2224689


Q ss_pred             cEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhccc-ccEEEeccCCC---ee---eccc
Q 021862          121 TVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-FNLAWIGAFPG---VK---IDTE  193 (306)
Q Consensus       121 ~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~-~~~~~~g~~~~---~~---~~~~  193 (306)
                      +++|+|||++||+|+|+++|+|+++|..+++.++++|.+|+|.||+....+..... .++.+|+....   +.   ...+
T Consensus        79 ~~~viTNi~~dHld~~~~~~~~~~~k~~~~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~~  158 (214)
T d1gg4a4          79 EAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVT  158 (214)
T ss_dssp             SEEEECCCC--------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHTTSEEEEECSSCTTCSBEEEEEEEC
T ss_pred             hheeeehhccccccccccHHHHHhhhhhHhhhhccCCccccccccHHHHHHHHHhcCCceeeeccCCCCcceeeeeEEEe
Confidence            99999999999999999999999999999999999999999999999988776553 46677886532   21   1112


Q ss_pred             cccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 021862          194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (306)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~  253 (306)
                      .....+.+...+..++   +.++++|+||++|+++|+  ++|..+|++++.|.++|++|+
T Consensus       159 ~~~~~~~i~~~~~~~~---~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~~l~~fk  213 (214)
T d1gg4a4         159 SHGTEFTLQTPTGSVD---VLLPLPGRHNIANALAAA--ALSMSVGATLDAIKAGLANLK  213 (214)
T ss_dssp             SSSEEEEEEETTEEEE---EEECSSSTHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCC
T ss_pred             CCceEEEEEECCceEE---EEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence            2334555555444444   378999999999999999  899999999999999999997

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.7e-34  Score=240.49  Aligned_cols=200  Identities=22%  Similarity=0.254  Sum_probs=144.0

Q ss_pred             hHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcc-cccCCChhhhhhhhccccCCCCCCCCcEEEEEecc
Q 021862           31 ELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSS  108 (306)
Q Consensus        31 ~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~-~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~  108 (306)
                      |++++...+. .+.++||||||||||||++||+++|++.|.++. ..|..+.++.....        ..+.+++|+|+++
T Consensus         1 r~~~~~~~l~~~~~~~iAITGTnGKTTt~~~l~~iL~~~g~~~~~~~g~~~~~~~~~~~--------~~~~~~~v~e~~e   72 (207)
T d1j6ua3           1 RLHYFRDTLKREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNY--------EKGNGPVVYELDE   72 (207)
T ss_dssp             HHHHHHHHHHHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSE--------ECCSSCEEEEECT
T ss_pred             ChHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCccccccchhc--------cCCCcceeEEeee
Confidence            3455543331 356899999999999999999999999999863 34555555433221        3345679999998


Q ss_pred             cccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhcccccEEEeccCCC
Q 021862          109 YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG  187 (306)
Q Consensus       109 ~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~  187 (306)
                      .+....  .++|+++|||||++||+|+|+ ++|.|.++|..+++   +++.+|+|.||+....+..      ++||....
T Consensus        73 ~~~~~~--~~~p~iaviTNI~~dHLd~~~~~~~~~~~~k~~~~~---~~~~~i~n~dd~~~~~~~~------~~~g~~~~  141 (207)
T d1j6ua3          73 SEEFFS--EFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISR---NTDLVVTFAEDELTSHLGD------VTFGVKKG  141 (207)
T ss_dssp             TSGGGG--GCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHH---TCSEEEEETTCTTTGGGCS------EEECSSSS
T ss_pred             chhhhh--hhhhceeeeeechhhhhhccCccccccccccchhhh---hcccccccccccccccccc------cccccccc
Confidence            763322  379999999999999999999 79999999999976   4689999999987654432      45554332


Q ss_pred             -eeec--c-ccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 021862          188 -VKID--T-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (306)
Q Consensus       188 -~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~  253 (306)
                       ..+.  . ......+.+...+...  ..++++++|.||++|+++|+  ++|..+|++.++|.++|++|+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~l~G~hn~~NalaAi--ava~~lgi~~~~i~~~L~~FK  207 (207)
T d1j6ua3         142 TYTLEMRSASRAEQKAMVEKNGKRY--LELKLKVPGFHNVLNALAVI--ALFDSLGYDLAPVLEALEEFR  207 (207)
T ss_dssp             SEEEEEEEECSSCEEEEEEETTEEE--EEEEESSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHHCC
T ss_pred             cccccccccccccccccccccCcEE--EEEEeCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence             1111  1 1111122222233221  23478999999999999999  899999999999999999986

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.97  E-value=8.7e-31  Score=233.83  Aligned_cols=213  Identities=15%  Similarity=0.127  Sum_probs=147.0

Q ss_pred             eehHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------CChhhhhhhhcc----
Q 021862           29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHC----   89 (306)
Q Consensus        29 l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~----   89 (306)
                      |.|+..+.+.++   +++++|+||||||||||++|+++||+++|+++++.++            .|.+++...+..    
T Consensus        22 l~r~~~~l~~lg~P~~~lkvI~VTGTNGKtST~~~i~~IL~~~G~kvG~~tSP~~~~~~e~~~~~~~~i~~~~~~~~~~~  101 (296)
T d2gc6a2          22 HRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALVNAVAF  101 (296)
T ss_dssp             CHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchhhCCEEEEeccCcHHHHHHHHHHHHHhcCCceeeeecccccchhhhhcccccCCcHHHHHHHHHH
Confidence            444444433331   5789999999999999999999999999999976554            122222111000    


Q ss_pred             ----------ccCC----------------CCCCCCcEEEEEeccccc-ccCCceecccEEEEecCChhhhhccC-CHHH
Q 021862           90 ----------IALP----------------SSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHK-TMKN  141 (306)
Q Consensus        90 ----------~~~~----------------~~~~~~~~~V~E~~~~~~-~~~~~~~~p~i~viTni~~dH~~~~g-t~e~  141 (306)
                                ....                ......|++++|++.+.. +..+ .+.|+++++|||+.||++++| |+|+
T Consensus       102 i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~~i~e~g~g~~~d~~~-~~~~~~~viTni~~dH~~~lg~tle~  180 (296)
T d2gc6a2         102 VRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTN-VITPVVSVLTEVALDHQKLLGHTITA  180 (296)
T ss_dssp             HHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTC-SCCCSEEEECCCCSTTHHHHCSSHHH
T ss_pred             HHHHHHhHHhhccCCCccHHHHHHHHHHHHHHHhcchhhhhhhHHHHhhhhhh-cccceeecccccchHHHHhhhhHHHH
Confidence                      0000                113567999999997654 4454 479999999999999999997 9999


Q ss_pred             HHHHHHHhhccccCCeeEEEeCCChhhHHHHh----cccccEEEeccCCCeee---ccccccceEEEecCCeeeEEEeec
Q 021862          142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKI---DTEAKTASFEVPAVGVVSQLQLHN  214 (306)
Q Consensus       142 ~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~----~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  214 (306)
                      |+.+|..+++   +++.+|++.+++.+...++    +.+.+.+.++.  ++.+   ........+.+.....  .+..++
T Consensus       181 Ia~~K~~i~k---~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  253 (296)
T d2gc6a2         181 IAKHKAGIIK---RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR--DFSVPKAKLHGWGQRFTYEDQDG--RISDLE  253 (296)
T ss_dssp             HHHHHHTTCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTT--TEEEEEEEECSSSEEEEEEETTE--EEEEEE
T ss_pred             HHHhhhcccc---cccccccccccHHHHHHHHHHHHhhCCcccccCc--ceeeeccccccCCceEEEEcCCC--ccCcCC
Confidence            9999999976   5778888877776655543    22345555553  3322   1122233444443332  222358


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHcC------CCHHHHHHHhhc
Q 021862          215 MKVMGRHNYHNAAVAALSVLGLDIG------VDVEALNSTIEI  251 (306)
Q Consensus       215 ~~l~G~~~~~N~l~A~~~a~~~~lg------~~~~~i~~~l~~  251 (306)
                      ++++|+||++|+++|+  +++..++      ++.+.|++||++
T Consensus       254 l~L~G~hn~~Na~~Ai--a~~~~l~~~~~~~i~~e~I~~GL~~  294 (296)
T d2gc6a2         254 VPLVGDYQQRNMAIAI--QTAKVYAKQTEWPLTPQNIRQGLAA  294 (296)
T ss_dssp             ESCCSHHHHHHHHHHH--HHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHH--HHHHHHHhhcCCCCCHHHHHHHHHh
Confidence            8999999999999999  7777653      889999999986

>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=1.1e-09  Score=84.55  Aligned_cols=48  Identities=21%  Similarity=0.241  Sum_probs=42.2

Q ss_pred             CCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC--CCcEEEEECCCC
Q 021862          255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQA  303 (306)
Q Consensus       255 ~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~--~~~~i~v~G~~~  303 (306)
                      +|||++.+. ..++.+||||+||+||+||+.||+.+.  ++|.++|+|+|.
T Consensus         1 vpgR~~~~~-~~~g~~iIdDsYNAnP~Sm~aAl~~l~~~~~~ki~vLGdM~   50 (135)
T d1gg4a1           1 VPGRLFPIQ-LAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMA   50 (135)
T ss_dssp             CTTSSEEEE-EETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCC
T ss_pred             CCCCCeEEE-cCCCcEEEecCCcCCHHHHHHHHHHhhccCCCceEEEcccc
Confidence            589999997 467899999999999999999999873  457899999985

>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=4.2e-09  Score=81.69  Aligned_cols=51  Identities=41%  Similarity=0.689  Sum_probs=47.0

Q ss_pred             CCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC-CCcEEEEECCCCCC
Q 021862          254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKE  305 (306)
Q Consensus       254 ~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~-~~~~i~v~G~~~~~  305 (306)
                      ++|+|||.+. ..+++.+|+|+.++||+|+..|+++++ ++++++|+||.+|+
T Consensus         1 GLpHR~e~v~-~~~gv~fiNDSKaTn~~a~~~Al~~~~~~~~iiLI~GG~~K~   52 (140)
T d2jfga2           1 GLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKS   52 (140)
T ss_dssp             CCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCTT
T ss_pred             CCCcceEEEE-EcCCEEEEECCccccHHHHHHHHhhhhccCceEEEeeccccc
Confidence            5899999998 688999999999999999999999996 57899999999986

>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.26  E-value=5.3e-07  Score=70.35  Aligned_cols=47  Identities=17%  Similarity=0.178  Sum_probs=39.0

Q ss_pred             CCCCeeeEEee-ccCCEEEEEcCCCCcHHHHHHHHhcc----CCCcEEEEECC
Q 021862          254 TPPHRMQIVHR-DIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGG  301 (306)
Q Consensus       254 ~~~gR~e~~~~-~~~~~~ii~D~~~~n~~s~~~al~~~----~~~~~i~v~G~  301 (306)
                      +++||||++.. ...+++||||| ||||.+++++|+++    +++++++||+.
T Consensus         1 Gv~rR~e~i~~~~~~~~~vidDy-AH~P~~i~a~l~a~r~~~~~~~ii~vf~p   52 (151)
T d1j6ua2           1 GVHRRFSIAFHDPETNIYVIDDY-AHTPDEIRNLLQTAKEVFENEKIVVIFQP   52 (151)
T ss_dssp             CCTTSSEEEEEETTTTEEEEEEC-CCSHHHHHHHHHHHHHHCSSSEEEEEECC
T ss_pred             CCCCCeEEEEecCCCCEEEEEEC-CCCHHHHHHHHHHhhhhhcccceeeeeec
Confidence            57999999842 45679999996 99999999999976    46788899865

>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: Folylpolyglutamate synthetase, C-terminal domain
domain: Folylpolyglutamate synthetase, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.02  E-value=3.6e-06  Score=64.22  Aligned_cols=46  Identities=20%  Similarity=0.304  Sum_probs=37.5

Q ss_pred             CeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc----CCCcEEEEECCCCCC
Q 021862          257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKE  305 (306)
Q Consensus       257 gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~----~~~~~i~v~G~~~~~  305 (306)
                      ||||++.  .++..+|.|+ +|||+|++.+++.+    +++++++|+|-+..+
T Consensus         1 GR~e~i~--~~~~~iilD~-AHN~~a~~~l~~~l~~~~~~~~~~~i~g~~~dk   50 (137)
T d1o5za1           1 GRFEILE--KNGKMYILDG-AHNPHGAESLVRSLKLYFNGEPLSLVIGILDDK   50 (137)
T ss_dssp             TSSEEEE--ETTEEEEECC-CCSHHHHHHHHHHHHHHCTTCCEEEEECCCTTS
T ss_pred             CCcEEEc--CCCCEEEEEC-CCCHHHHHHHHHHHHhhhccccceeeecccccc
Confidence            8999994  4567888886 99999999988876    467899999876554

>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: Folylpolyglutamate synthetase, C-terminal domain
domain: Folylpolyglutamate synthetase, C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.96  E-value=2.4e-06  Score=64.43  Aligned_cols=46  Identities=20%  Similarity=0.172  Sum_probs=34.9

Q ss_pred             CCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc---CCCcEEEEECCCCCC
Q 021862          256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKE  305 (306)
Q Consensus       256 ~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~---~~~~~i~v~G~~~~~  305 (306)
                      |||||++.  .+ ..++.|+ +|||+|++.+++.+   ..+++++|+|.+.++
T Consensus         2 PGR~e~i~--~~-~~iilD~-AHN~~~~~~l~~~l~~~~~~~~~~v~g~~~dK   50 (129)
T d2gc6a1           2 PARLEKIS--DT-PLIVIDG-AHNPDGINGLITALKQLFSQPITVIAGILADK   50 (129)
T ss_dssp             TTSSEEEE--TT-TTEEECC-CCSHHHHHHHHHHHHHHCSSCCEEEECCC---
T ss_pred             CCceEEec--CC-CcEEEEC-CCCHHHHHHHhhccccccchhhhhhccccCCc
Confidence            89999994  33 4677775 99999999988776   357889999987654

>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.86  E-value=6.4e-06  Score=63.50  Aligned_cols=47  Identities=13%  Similarity=0.151  Sum_probs=37.1

Q ss_pred             CCCCeeeEEee---ccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECC
Q 021862          254 TPPHRMQIVHR---DIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG  301 (306)
Q Consensus       254 ~~~gR~e~~~~---~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~  301 (306)
                      ++++|||+++.   ..++++||||| ||+|.+++++|++++    ++++++++..
T Consensus         1 Gv~RRfe~~ge~~~~~~~~~VidDy-AHhPtaI~a~l~a~r~~~~~~~~~~~~~~   54 (152)
T d1p3da2           1 GAGRRFDQLGEFIRPNGKVRLVDDY-GHHPTEVGVTIKAAREGWGDKRIVMIFQP   54 (152)
T ss_dssp             CBTTSSEEEEEEEETTEEEEEEEEC-CCSHHHHHHHHHHHHHHHCSSCEEEEECC
T ss_pred             CCCcceEEeceecccCCCcEEEEeC-CCCCHHHHHHHHHhhhhhhhhhhheeeec
Confidence            47899999962   25789999996 999999999999873    5566666543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.69  E-value=0.00041  Score=48.34  Aligned_cols=27  Identities=4%  Similarity=-0.129  Sum_probs=25.1

Q ss_pred             ecccccccccCchHHHHHHhcCCeeee
Q 021862            4 LWLFLLEFQLKATGLACLLQSGKRVMS   30 (306)
Q Consensus         4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~   30 (306)
                      ++|+||+|+++||+++.|+++++|+++
T Consensus        63 ~vV~SsAI~~~npel~~A~~~gIpv~~   89 (89)
T d1j6ua1          63 LVIKTPAVRDDNPEIVRARMERVPIEN   89 (89)
T ss_dssp             EEEECTTCCTTCHHHHHHHHTTCCEEE
T ss_pred             EEEEecCcCCCCHHHHHHHHcCCCccC
Confidence            578999999999999999999999874

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0038  Score=49.77  Aligned_cols=31  Identities=29%  Similarity=0.234  Sum_probs=28.1

Q ss_pred             cEEEEecCC---ChhhHHHHHHHHHHhcCCCccc
Q 021862           44 KILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        44 ~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      |.+-||||.   ||||++.-|.+.|.+.|++|..
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~   35 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG   35 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence            568888887   9999999999999999999964

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.70  E-value=0.053  Score=41.09  Aligned_cols=34  Identities=18%  Similarity=0.115  Sum_probs=29.3

Q ss_pred             CcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862           43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (306)
Q Consensus        43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g   76 (306)
                      +++|+|||.+  ||||+..-|..-|+..|+++++.-
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik   36 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   36 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            4789999985  799999999999999999996543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.51  E-value=0.05  Score=45.32  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=28.1

Q ss_pred             CcEEEEe--cCCChhhHHHHHHHHHHhcCCCccc
Q 021862           43 IKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        43 ~~~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      +++|+|+  |-.|||||+.-|+..|.+.|++|.+
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLl   35 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMI   35 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            5678887  7889999999999999999999853

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.46  E-value=0.039  Score=46.34  Aligned_cols=33  Identities=33%  Similarity=0.529  Sum_probs=27.8

Q ss_pred             CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcc
Q 021862           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF   73 (306)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~   73 (306)
                      .+-++|+|||..  ||||++..+.++|...|.++.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~   36 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAV   36 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEE
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeE
Confidence            466899999985  799999999999999887753

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.57  E-value=0.071  Score=40.66  Aligned_cols=31  Identities=45%  Similarity=0.553  Sum_probs=26.9

Q ss_pred             CcEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862           43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (306)
Q Consensus        43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~   73 (306)
                      +++|.|+|.  .||||++..|++.|...|+.+.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~   33 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNK   33 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence            478889997  5899999999999999888763

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=91.18  E-value=0.099  Score=39.07  Aligned_cols=33  Identities=27%  Similarity=0.248  Sum_probs=28.6

Q ss_pred             CcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccc
Q 021862           43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG   75 (306)
Q Consensus        43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~   75 (306)
                      +|+|+|||..  ||||...-|..-|.+.|+++++.
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~   36 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI   36 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence            4799999985  79999999999999999998643

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.56  E-value=0.13  Score=40.75  Aligned_cols=32  Identities=25%  Similarity=0.522  Sum_probs=28.2

Q ss_pred             CcEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862           43 IKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        43 ~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      +++|+|++.   .||||++.-|+..|.+.|++|.+
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~Vll   35 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTI   35 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEE
Confidence            478888865   79999999999999999999864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.75  E-value=0.16  Score=41.55  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=27.1

Q ss_pred             CcEEEEec--CCChhhHHHHHHHHHHhcCCCccc
Q 021862           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        43 ~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      +++|+|+|  =.||||++.-|+..|.+.|++|.+
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVll   34 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMV   34 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEE
Confidence            46788875  568999999999999999999853

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.67  E-value=0.45  Score=40.23  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=29.8

Q ss_pred             CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccc
Q 021862           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG   75 (306)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~   75 (306)
                      .+..+|+|||+-  ||||+..-|...+...|+++++.
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaVi   85 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL   85 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeee
Confidence            467899999985  79999999988888899998643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=87.37  E-value=0.33  Score=41.22  Aligned_cols=34  Identities=38%  Similarity=0.465  Sum_probs=30.5

Q ss_pred             CCCcEEEEecC--CChhhHHHHHHHHHHhcCCCccc
Q 021862           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        41 ~~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      .+..+|+|||.  .||||...-|...+.+.|.++++
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vav   87 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV   87 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceee
Confidence            56889999999  89999999999999999999864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=87.12  E-value=0.26  Score=37.00  Aligned_cols=30  Identities=27%  Similarity=0.368  Sum_probs=26.0

Q ss_pred             cEEEEecCC--ChhhHHHHHHHHHHhcCCCcc
Q 021862           44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF   73 (306)
Q Consensus        44 ~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~   73 (306)
                      ++|.|+|..  ||||.+..|+.-|...|.++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~   33 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK   33 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence            688999874  799999999999999887764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.37  E-value=0.28  Score=40.06  Aligned_cols=35  Identities=17%  Similarity=0.357  Sum_probs=27.8

Q ss_pred             CCcEEEEec--CCChhhHHHHHHHHHHhcCCCccccc
Q 021862           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG   76 (306)
Q Consensus        42 ~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~~g   76 (306)
                      ..++|.++|  =.|||||+..|+..|.+.|++|.+.-
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD   55 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTT   55 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            455666654  56899999999999999999986533

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.36  E-value=0.29  Score=38.63  Aligned_cols=31  Identities=23%  Similarity=0.414  Sum_probs=26.7

Q ss_pred             cEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862           44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (306)
Q Consensus        44 ~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~   74 (306)
                      ++|+|+|.   .||||++.-|+..|.+.|++|.+
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~Vll   36 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLA   36 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEE
Confidence            57888855   68999999999999999999854

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=85.58  E-value=0.33  Score=40.83  Aligned_cols=33  Identities=21%  Similarity=0.287  Sum_probs=26.2

Q ss_pred             CCcEEEEecC--CChhhHHHHHHHHHHhc--CCCccc
Q 021862           42 SIKILAVTGT--NGKSTVVTFVGQMLNHL--GIEAFV   74 (306)
Q Consensus        42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~--g~~~~~   74 (306)
                      ...+|+|+|.  .||||+++.|..+|...  +.++.+
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~  115 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL  115 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEE
Confidence            4559999997  58999999999999864  455543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.37  E-value=0.44  Score=36.13  Aligned_cols=32  Identities=28%  Similarity=0.458  Sum_probs=26.9

Q ss_pred             CCcEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (306)
Q Consensus        42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~   73 (306)
                      ..-+|+|+|-  .||||.+..|...|...+..+.
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~   54 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVC   54 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhccccccce
Confidence            4448999986  5899999999999999887763

>d1aoea_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type {Yeast (Candida albicans) [TaxId: 5476]}

class: Alpha and beta proteins (a/b)
fold: Dihydrofolate reductase-like
superfamily: Dihydrofolate reductase-like
family: Dihydrofolate reductases
domain: Dihydrofolate reductases, eukaryotic type
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=82.21  E-value=0.32  Score=37.95  Aligned_cols=51  Identities=20%  Similarity=0.317  Sum_probs=32.0

Q ss_pred             hcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECC
Q 021862          250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG  301 (306)
Q Consensus       250 ~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~  301 (306)
                      ..++|+|+|..++-.+........+. ..-..|++++++.+++..-++|+||
T Consensus        64 ~~~rPLp~R~niVlSr~~~~~~~~~~-v~~~~s~~~al~~~~~~~~i~ViGG  114 (192)
T d1aoea_          64 QKFRPLPDRLNIILSRSYENEIIDDN-IIHASSIESSLNLVSDVERVFIIGG  114 (192)
T ss_dssp             GGGCSCTTSEEEEECTTCCCEEEETT-EEEESSHHHHHHTCCSEEEEEECCC
T ss_pred             cccccccCceEEEEecccccccccce-eeeecCHHHHHHHhcCCcEEEEecc
Confidence            35789999999996433333333332 2223356677777765456888888

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=80.65  E-value=0.44  Score=38.94  Aligned_cols=36  Identities=19%  Similarity=0.185  Sum_probs=29.6

Q ss_pred             CCcEEEEec--CCChhhHHHHHHHHHHhcCCCcccccC
Q 021862           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (306)
Q Consensus        42 ~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~~g~   77 (306)
                      ..++|.++|  -.||||++..++..|.+.|++|.+...
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~   44 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST   44 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeC
Confidence            345777776  578999999999999999999976554