Citrus Sinensis ID: 021871

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEcccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEccccEEEEEccccEEEcccccEEcccEEEEcccccccccccccccccccEEEEccHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHcccEEEcccEEEEEEEcccccEEEEEcccccEEEccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccEEEEEcccHHHHHHHHHHHHcccccccEEEEccccccccccccccHHHHcccccccEEccccccccccccccccHHHHHHcccEEEcccEEEEEcccccEEEEccccEEcccEEEEEccccccccccccccccccEEEEEcHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHccHHHHHHHHHHHHHcccEEEEccEEEEEEEccccEEEEEEEccccEEcccEEEEEcccc
Coil and Loop (DISEMBL)
masvsnslsfkhglslwcpqspslhrirhsSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVehgmadgrlcivskeayapyerpaltkgylfpldkkparlpgfhtcvgsggerqtpewykekgiemiyqdpvtsidiEKQTLITNSGKLLKYGSLIvatgctasrfpekiggylpgvhyirdVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVgwkldttiifpenhllqrlftpSLAQRYEQLYQQNGVKFVKGASiknleagsdgrVAAVkledgstidadtvillpydq
Flexible Loop (DISEMBL)
masvsnslsfkhglsLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHtcvgsggerqtpeWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIknleagsdGRVAavkledgstidadtvillpydq
Low Complexity Region (SEG)
MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKvvvvgggYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ
Disordered region (IsUnstruct)
***********HGLSLWCPQ****HRI****AKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILL****
Disordered Region (DISOPRED)
******S*SFKHGLSLWCPQSPSLHRI**************************FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD*
Disordered Region (DISEMBL)
***********HGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ
Disordered Region (DISPRO)
********SFKHGL**WCPQSPSLH*****SAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	306	2.2.26 [Sep-21-2011]
P92947	493	Monodehydroascorbate redu	yes	no	0.977	0.606	0.780	1e-130
Q40977	433	Monodehydroascorbate redu	N/A	no	0.807	0.570	0.474	2e-60
Q43497	433	Monodehydroascorbate redu	N/A	no	0.826	0.584	0.447	9e-59
Q9LK94	488	Probable monodehydroascor	no	no	0.751	0.471	0.466	3e-58
Q9LFA3	434	Probable monodehydroascor	no	no	0.826	0.582	0.436	9e-54
Q42711	434	Monodehydroascorbate redu	N/A	no	0.823	0.580	0.473	5e-51
Q93WJ8	435	Probable monodehydroascor	no	no	0.758	0.533	0.424	3e-48
Q9SR59	441	Probable monodehydroascor	no	no	0.751	0.521	0.384	5e-44
P43494	427	Rhodocoxin reductase OS=R	no	no	0.754	0.540	0.312	3e-26
D5IGG6	414	Ferredoxin--NAD(P)(+) red	N/A	no	0.784	0.579	0.317	1e-24

>sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3

 Score =  464 bits (1194), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/305 (78%), Positives = 264/305 (86%), Gaps = 6/305 (1%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
           MA  S +L  K GLSLWCP SPSL R    R S        R  V A  SFANENREFVI
Sbjct: 8   MALASTTLPTKSGLSLWCPSSPSLARRFPARFSPIGSRIASRSLVTA--SFANENREFVI 65

Query: 57  VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
           VGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 66  VGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 125

Query: 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
           CVG GGERQTP+WYKEKGIE+IY+DPV   D EKQTL T++GK LKYGSLI+ATGCTASR
Sbjct: 126 CVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASR 185

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
           FP+KIGG+LPGVHYIR+VADAD+LI+SL KAKK+V+VGGGYIGMEVAAAAV W LDTTI+
Sbjct: 186 FPDKIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIV 245

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
           FPE+ LLQRLFTPSLAQ+YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVKL DGSTI+A
Sbjct: 246 FPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEA 305

Query: 297 DTVIL 301
           DTV++
Sbjct: 306 DTVVI 310

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4

>sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1

 Score =  233 bits (593), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/253 (47%), Positives = 163/253 (64%), Gaps = 6/253 (2%)

Query: 53  EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
           +++I+GGG +AGYAAR FV+ G+  G L I+SKEA APYERPAL+K YLFP  + PARLP
Sbjct: 6   KYIIIGGGVSAGYAAREFVKQGVHPGELAIISKEAVAPYERPALSKAYLFP--ESPARLP 63

Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
           GFHTCVGSGGER  PEWY EKGI++     + S D+  + L + +G+   Y +L++ATG 
Sbjct: 64  GFHTCVGSGGERLLPEWYSEKGIQLYLSTEIVSADLAAKFLKSANGEHFDYQTLVIATGS 123

Query: 173 TASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAK--KVVVVGGGYIGMEVAAAAVG 228
              R  +   IG     + Y+R+V DAD L  ++++ K  K VVVGGGYIG+E++A    
Sbjct: 124 AVIRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAVLKL 183

Query: 229 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 288
             LD T+++PE   + RLFT  +A  YE  Y   G+  +KG       A SDG V  VKL
Sbjct: 184 NDLDVTMVYPEPWCMPRLFTSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKEVKL 243

Query: 289 EDGSTIDADTVIL 301
           +DG  ++AD VI+
Sbjct: 244 KDGRVLEADIVIV 256

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1

 Score =  227 bits (578), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 116/259 (44%), Positives = 165/259 (63%), Gaps = 6/259 (2%)

Query: 47  FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
            A ++ ++VIVGGG +AGYAAR F + G+  G L I+SKEA APYERPAL+K YLFP  +
Sbjct: 1   MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFP--E 58

Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
             ARLPGFH CVGSGGERQ PEWY EKGI +I    +   D+  +TL++ +G+  KY +L
Sbjct: 59  GAARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTL 118

Query: 167 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAK--KVVVVGGGYIGMEV 222
           ++ATG T  +  +    G     + Y+R++ DAD L+ +L+  K  K VVVGGGYIG+E+
Sbjct: 119 VIATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLEL 178

Query: 223 AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282
           +A      ++  +++PE   + RLFT  +A  YE  Y+  GV  +KG      +   +G 
Sbjct: 179 SAVLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGE 238

Query: 283 VAAVKLEDGSTIDADTVIL 301
           V  VKL+DG  ++AD V++
Sbjct: 239 VKEVKLKDGRVLEADIVVV 257

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1

 Score =  225 bits (574), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/236 (46%), Positives = 160/236 (67%), Gaps = 6/236 (2%)

Query: 70  FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129
           F   G++DG LCI+S+E  APYERPAL+KG+L P  + PARLP FHTCVG+  E+ TP+W
Sbjct: 23  FTRRGVSDGELCIISEEPVAPYERPALSKGFLLP--EAPARLPSFHTCVGANDEKLTPKW 80

Query: 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPG 187
           YK+ GIE++    V S+D+ ++TL++++G+ + Y  LI+ATG  A +  E    G     
Sbjct: 81  YKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATGARALKLEEFGVEGSDAEN 140

Query: 188 VHYIRDVADADALISSLEKAKK--VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 245
           V Y+RD+ADA+ L + ++ +     VV+GGGYIGME AA+ V  K++ T++FPE H + R
Sbjct: 141 VCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 200

Query: 246 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
           LFTP +A  YE  Y+  GVKF+KG  + + E  S+ +V AV L+DGS + AD V++
Sbjct: 201 LFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLKDGSHLPADLVVV 256

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1

 Score =  210 bits (535), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 113/259 (43%), Positives = 162/259 (62%), Gaps = 6/259 (2%)

Query: 47  FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
            A ++ +++I+GGG +AGYAA+ F   G+  G L ++SKEA APYERPAL+KGYLFP  +
Sbjct: 1   MAEKSFKYIILGGGVSAGYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFP--E 58

Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
             ARLPGFH CVGSGGE+  PE YK+KGIE+I    +   D+  ++L++ +G + KY +L
Sbjct: 59  GAARLPGFHCCVGSGGEKLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTL 118

Query: 167 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG--YIGMEV 222
           I+ATG T  R  +    G     + Y+R++ DAD L+ +++  K    V  G  YIG+E+
Sbjct: 119 IIATGSTVLRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLEL 178

Query: 223 AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282
           +A      LD T++FPE   + RLFT  +A  YE  Y   GVK +KG       A  +G 
Sbjct: 179 SAVLRINNLDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGE 238

Query: 283 VAAVKLEDGSTIDADTVIL 301
           V  V+L+DG T++AD VI+
Sbjct: 239 VKEVQLKDGRTLEADIVIV 257

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1

 Score =  201 bits (512), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 123/260 (47%), Positives = 168/260 (64%), Gaps = 8/260 (3%)

Query: 47  FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
            A+E  ++VI+GGG AAGYAAR FV+ G+  G L I+SKEA APYERPAL+K YLFP  +
Sbjct: 1   MADETFKYVILGGGVAAGYAAREFVKQGLNPGELAIISKEAVAPYERPALSKAYLFP--E 58

Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
            PARLPGFH CVGSGGER  P+WYKEKGIE+I    +   D+  + L +  GK+  Y +L
Sbjct: 59  SPARLPGFHVCVGSGGERLLPDWYKEKGIELILSTEIVEADLPAKRLRSAHGKIYNYQTL 118

Query: 167 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAKK---VVVVGGGYIGME 221
           I+ATG T  +  +    G     + Y+R++ DAD L+ ++ KAK+   VVVVGGGYIG+E
Sbjct: 119 IIATGSTVIKLSDFGVQGADAKNIFYLREIDDADQLVEAI-KAKENGKVVVVGGGYIGLE 177

Query: 222 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 281
           + AA      D ++++PE   + RLFTP +A  YE  Y Q G+  +KG         ++G
Sbjct: 178 LGAALRINNFDVSMVYPEPWCMPRLFTPEIAAFYEGYYAQKGITIIKGTVAVGFTVDTNG 237

Query: 282 RVAAVKLEDGSTIDADTVIL 301
            V  VKL+DG  ++AD V++
Sbjct: 238 EVKEVKLKDGRVLEADIVVV 257

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1

 Score =  192 bits (487), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/238 (42%), Positives = 142/238 (59%), Gaps = 6/238 (2%)

Query: 68  RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127
           R F   G+  G L I+S+E   PYERPAL+KGY+   +K  A LP F+   G GGERQ P
Sbjct: 23  REFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENK--ATLPNFYVAAGIGGERQFP 80

Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYL 185
           +WYKEKGIE+I    +   D+  +TL++ +G++ KY +L+ ATG +  R  +    G   
Sbjct: 81  QWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGSSVIRLSDFGVPGADA 140

Query: 186 PGVHYIRDVADADALISSLEKAKK--VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243
             + Y+R++ DAD L  ++E  +K   VVVGGGYIG+E+ AA     LD T+++PE   +
Sbjct: 141 KNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANNLDVTMVYPEPWCM 200

Query: 244 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
            RLFT  +A  YE  Y   G+  VKG         S+G V  VKL+DG T++AD VI+
Sbjct: 201 PRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIV 258

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1

 Score =  178 bits (451), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/239 (38%), Positives = 140/239 (58%), Gaps = 9/239 (3%)

Query: 68  RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127
           R F   G+  G L I+SKE   P+ERP LTK Y+  L+  P  L   + C G+G  +Q P
Sbjct: 23  REFSNQGLKPGELAIISKEPVPPFERPELTKVYI-DLEVNPT-LANIYVCAGTGEAKQYP 80

Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GY 184
            WYKEKGI++I    +   D+  +TL+++ GK+ KY +L++ATG T  R  E IG     
Sbjct: 81  NWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGSTNIRLSE-IGVQEAD 139

Query: 185 LPGVHYIRDVADADALISSLE---KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241
           +  + Y+R++ D+D L  ++E   +  K V++GGG++G+E+++A      + T++FPE  
Sbjct: 140 VKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPW 199

Query: 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300
           L+ R FT  +A  YE  Y   G+K +KG         SDG V  VKLEDG T++A+ V+
Sbjct: 200 LVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVV 258

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P43494|THCD_RHOER Rhodocoxin reductase OS=Rhodococcus erythropolis GN=thcD PE=1 SV=2

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 121/250 (48%), Gaps = 19/250 (7%)

Query: 54  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF--PLDKKPARL 111
            VI+G G A   AA +   HG + G + +V  E   PY+RP L+K YL   P  +  A  
Sbjct: 3   IVIIGSGQAGFEAAVSLRSHGFS-GTITLVGDEPGVPYQRPPLSKAYLHSDPDRESLALR 61

Query: 112 PGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG 171
           P               +++ +  I +    PV  ID + Q +       ++Y  LI+ATG
Sbjct: 62  PA--------------QYFDDHRITLTCGKPVVRIDRDAQRVELIDATAIEYDHLILATG 107

Query: 172 CTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 231
                 P   G  LPGVHY+R   +A++L SS+     +VV+G G+IG+EVAAAA    L
Sbjct: 108 ARNRLLPVP-GANLPGVHYLRTAGEAESLTSSMASCSSLVVIGAGFIGLEVAAAARKKGL 166

Query: 232 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG 291
           D T++   +  + R  +  ++  +   + ++GV       +K + A +DGR A V    G
Sbjct: 167 DVTVVEAMDRPMARALSSVMSGYFSTAHTEHGVHMRLSTGVKTINA-ADGRAAGVTTNSG 225

Query: 292 STIDADTVIL 301
             I AD V++
Sbjct: 226 DVIHADAVVV 235

The degradation of the thiocarbamate herbicide EPTC by cytochrome CYP116 (thcB) requires the participation of a flavoprotein, rhodocoxin reductase, and an iron-sulfur protein, rhodocoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Rhodococcus erythropolis (taxid: 1833)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

>sp|D5IGG6|FDR_SPHSX Ferredoxin--NAD(P)(+) reductase fdr OS=Sphingomonas sp. GN=fdr PE=1 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 125/255 (49%), Gaps = 15/255 (5%)

Query: 47  FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
             + + + VIVG G+     A    ++G A G + I+  E   PYERP L+K YL     
Sbjct: 1   MTDTHYDVVIVGAGHGGAQTAIALRQNGFA-GTIAIIGAEPDLPYERPPLSKEYL----- 54

Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
             A   GF   +      +   ++ ++ I M     V  +D  ++ +    G+ + YG L
Sbjct: 55  --AAEKGFERIL-----IRPASFWNDRHIAMHLGCAVERVDPTQRLVFLADGRSMGYGDL 107

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 226
           +   G +A R  +  G  L GVHY+R  AD DAL + L    KVV++GGGYIG+E AA  
Sbjct: 108 VWCAGGSARRL-DCTGHDLGGVHYVRTRADTDALAAELPGVSKVVIIGGGYIGLEAAAVM 166

Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 286
             +  + T+I   + +L R+    L++ +E+ ++  GV       +  L  G DGRV  V
Sbjct: 167 AKFGKNVTLIEALDRVLARVAGEPLSRFFEEKHRSRGVDVRLRTKVGCL-LGQDGRVTHV 225

Query: 287 KLEDGSTIDADTVIL 301
           +L D   I AD VI+
Sbjct: 226 ELNDADPIPADLVIV 240

Part of the multicomponent carbazole 1,9a-dioxygenase (CARDO), that converts carbazole (CAR) into 2-aminobiphenyl-2,3-diol.

Sphingomonas sp (taxid: 28214)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
359474156	497	PREDICTED: monodehydroascorbate reductas	0.983	0.605	0.825	1e-140
297742237	490	unnamed protein product [Vitis vinifera]	0.983	0.614	0.825	1e-139
147834040	889	hypothetical protein VITISV_021486 [Viti	0.983	0.338	0.791	1e-138
194716776	486	monodehydroascorbate reductase [Picrorhi	0.980	0.617	0.802	1e-137
224058437	497	predicted protein [Populus trichocarpa]	0.970	0.597	0.819	1e-137
255537579	493	monodehydroascorbate reductase, putative	0.977	0.606	0.828	1e-133
350536875	482	monodehydroascorbate reductase [Solanum	0.983	0.624	0.794	1e-133
110265126	482	chloroplast monodehydroascorbate reducta	0.983	0.624	0.794	1e-133
46093473	486	monodehydroascorbate reductase [Brassica	0.977	0.615	0.796	1e-130
297840097	486	hypothetical protein ARALYDRAFT_474964 [	0.977	0.615	0.783	1e-128

>gi|359474156|ref|XP_002278648.2| PREDICTED: monodehydroascorbate reductase, chloroplastic [Vitis vinifera]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/303 (82%), Positives = 278/303 (91%), Gaps = 2/303 (0%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVIVG 58
           MAS+SNSL  KHG+SLWCPQ  SL+R R  S+   +   R + V   +FANENREFVIVG
Sbjct: 8   MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVG 67

Query: 59  GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
           GGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCV
Sbjct: 68  GGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCV 127

Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           GSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR P
Sbjct: 128 GSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLP 187

Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
           +KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTTIIFP
Sbjct: 188 DKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFP 247

Query: 239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 298
           E+HLLQRLFTP+LA+RYE+ YQ+NGVKFVKGASIKN+EAGSDG V AVKLE+GSTI+ADT
Sbjct: 248 EDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADT 307

Query: 299 VIL 301
           +I+
Sbjct: 308 III 310

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742237|emb|CBI34386.3| unnamed protein product [Vitis vinifera]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/303 (82%), Positives = 278/303 (91%), Gaps = 2/303 (0%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVIVG 58
           MAS+SNSL  KHG+SLWCPQ  SL+R R  S+   +   R + V   +FANENREFVIVG
Sbjct: 1   MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVG 60

Query: 59  GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
           GGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCV
Sbjct: 61  GGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCV 120

Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           GSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR P
Sbjct: 121 GSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLP 180

Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
           +KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTTIIFP
Sbjct: 181 DKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFP 240

Query: 239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 298
           E+HLLQRLFTP+LA+RYE+ YQ+NGVKFVKGASIKN+EAGSDG V AVKLE+GSTI+ADT
Sbjct: 241 EDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADT 300

Query: 299 VIL 301
           +I+
Sbjct: 301 III 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834040|emb|CAN64338.1| hypothetical protein VITISV_021486 [Vitis vinifera]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/316 (79%), Positives = 278/316 (87%), Gaps = 15/316 (4%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVIVG 58
           MAS+SNSL  KHG+SLWCPQ  SL+R R  S+   +   R + V   +FANENREFVIVG
Sbjct: 387 MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVG 446

Query: 59  GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
           GGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCV
Sbjct: 447 GGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCV 506

Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS--- 175
           GSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTAS   
Sbjct: 507 GSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRRS 566

Query: 176 ----------RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
                     R P+KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAA
Sbjct: 567 EDEFFSSPDFRLPDKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAA 626

Query: 226 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285
           A GWKLDTTIIFPE+HLLQRLFTP+LA+RYE+ YQ+NGVKFVKGASIKN+EAGSDG V A
Sbjct: 627 AAGWKLDTTIIFPEDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTA 686

Query: 286 VKLEDGSTIDADTVIL 301
           VKLE+GSTI+ADT+I+
Sbjct: 687 VKLENGSTIEADTIII 702

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194716776|gb|ACF93237.1| monodehydroascorbate reductase [Picrorhiza kurrooa]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/304 (80%), Positives = 275/304 (90%), Gaps = 4/304 (1%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHS---SAKNFQRRGFVVAYSSFANENREFVIV 57
           M+S+SN+LSFKHGLSLWCP S S+++I      S+K F+RR F V  SSFANENREFVIV
Sbjct: 1   MSSISNALSFKHGLSLWCPHSTSVNQISQPCSVSSKIFRRR-FSVLASSFANENREFVIV 59

Query: 58  GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC 117
           GGGNA+GYAARTFVEHGMADG+LCIVSKEAY PYERPALTK YLFPLDKKPARLPGFHTC
Sbjct: 60  GGGNASGYAARTFVEHGMADGKLCIVSKEAYVPYERPALTKAYLFPLDKKPARLPGFHTC 119

Query: 118 VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF 177
           VG+GGERQTP+WYKEKGIEM+++DPV  ID EKQTL TNSGKLLKYGSLI+ATGCTASRF
Sbjct: 120 VGAGGERQTPDWYKEKGIEMLHEDPVADIDTEKQTLTTNSGKLLKYGSLIIATGCTASRF 179

Query: 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
           P+KIGG LPGVHY+RDVADA++LISSLEK+KKVVVVGGGYIGMEVAAA V WKLDTTIIF
Sbjct: 180 PDKIGGNLPGVHYVRDVADANSLISSLEKSKKVVVVGGGYIGMEVAAATVAWKLDTTIIF 239

Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PE+HL+ RLFTPSLAQ+YE LY+  GV FVKGASIK+LEAGSDGRV+ VKLE+GS I+AD
Sbjct: 240 PEDHLMTRLFTPSLAQKYEDLYKDYGVNFVKGASIKSLEAGSDGRVSGVKLENGSIIEAD 299

Query: 298 TVIL 301
           TV++
Sbjct: 300 TVVI 303

Source: Picrorhiza kurrooa

Species: Picrorhiza kurrooa

Genus: Picrorhiza

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058437|ref|XP_002299509.1| predicted protein [Populus trichocarpa] gi|118488230|gb|ABK95934.1| unknown [Populus trichocarpa] gi|222846767|gb|EEE84314.1| predicted protein [Populus trichocarpa]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/304 (81%), Positives = 272/304 (89%), Gaps = 7/304 (2%)

Query: 5   SNSLSFKHGLSLWCPQSPSLHRIRHSSA------KNFQRRGFVVAYSS-FANENREFVIV 57
           SN +SFKHGLSLWCPQS  LHR   SS       K F R   V A SS FANENRE+VIV
Sbjct: 9   SNPMSFKHGLSLWCPQSSPLHRTLQSSPSSSIGFKTFFRNHVVAASSSSFANENREYVIV 68

Query: 58  GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC 117
           GGGNAAGYAAR+FVEHGMADG+LCIV++EAYAPYERPALTK YLFPLDKKPARLPGFHTC
Sbjct: 69  GGGNAAGYAARSFVEHGMADGKLCIVTREAYAPYERPALTKAYLFPLDKKPARLPGFHTC 128

Query: 118 VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF 177
           VGSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQT  T SGKLLKYG+LIVATGC+ASRF
Sbjct: 129 VGSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTATTISGKLLKYGTLIVATGCSASRF 188

Query: 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
           PEKIGG LPGVHYIRDVADAD+LISSLEKA K+V+VGGGYIGMEVAAAAV WKLDTTIIF
Sbjct: 189 PEKIGGNLPGVHYIRDVADADSLISSLEKAHKLVIVGGGYIGMEVAAAAVAWKLDTTIIF 248

Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PENHL+QRLFTPSLAQ+YE+LYQ+NGVKF+KGASIKNLEA SDG VAA+KLE+GSTI+AD
Sbjct: 249 PENHLMQRLFTPSLAQKYEELYQENGVKFIKGASIKNLEASSDGHVAAIKLENGSTIEAD 308

Query: 298 TVIL 301
            VI+
Sbjct: 309 MVII 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537579|ref|XP_002509856.1| monodehydroascorbate reductase, putative [Ricinus communis] gi|223549755|gb|EEF51243.1| monodehydroascorbate reductase, putative [Ricinus communis]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 251/303 (82%), Positives = 276/303 (91%), Gaps = 4/303 (1%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSS--AKNFQRRGFVVAYSSFANENREFVIVG 58
           MA++SNSL  KHGLSLWCP S SL+R  H+   A     R +VV  S+F+NENREFVIVG
Sbjct: 8   MATISNSLPLKHGLSLWCPHSSSLNRTFHTPPIAYRIVHRNYVV--SAFSNENREFVIVG 65

Query: 59  GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
           GGNAAGYAARTFVEHGMADGRLCIV+KE +APYERPALTK YLFPLDKKPARLPGFHTCV
Sbjct: 66  GGNAAGYAARTFVEHGMADGRLCIVTKEPHAPYERPALTKAYLFPLDKKPARLPGFHTCV 125

Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           GSGGERQTP+WY+EKGIEM+Y+DPVTSIDIEKQTL TNSGKLLKYG+LI+ATG TASRFP
Sbjct: 126 GSGGERQTPDWYQEKGIEMLYEDPVTSIDIEKQTLGTNSGKLLKYGTLIIATGSTASRFP 185

Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
           EKIGG LPGVHYIRDVADAD+LISSL+KA+KVVVVGGGYIGMEVAAAAVGW LDTTIIFP
Sbjct: 186 EKIGGSLPGVHYIRDVADADSLISSLDKARKVVVVGGGYIGMEVAAAAVGWNLDTTIIFP 245

Query: 239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 298
           E HLLQRLFTPSLAQRYE+LY++NGVKF+KGASIKNLEAGSDG VA VKLEDGS I+ADT
Sbjct: 246 EKHLLQRLFTPSLAQRYEELYKENGVKFLKGASIKNLEAGSDGHVATVKLEDGSIIEADT 305

Query: 299 VIL 301
           V++
Sbjct: 306 VVI 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536875|ref|NP_001234013.1| monodehydroascorbate reductase [Solanum lycopersicum] gi|195542238|gb|AAZ66138.2| monodehydroascorbate reductase [Solanum lycopersicum] gi|299507810|gb|ADJ21816.1| monodehydroascorbate reductase [Solanum lycopersicum var. cerasiforme]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/301 (79%), Positives = 266/301 (88%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGG 60
           MA+  N++S K GLSLWCPQS  L+RI   S  +   R   VA SSF NENRE+V+VGGG
Sbjct: 1   MATTPNTMSIKQGLSLWCPQSAVLNRISRVSVPSRSFRRSFVAASSFDNENREYVVVGGG 60

Query: 61  NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS 120
           NAAGYAARTFVEHG A+G+LCIV+KE YAPYERPALTK YLFPLDKKPARLPGFHTCVG+
Sbjct: 61  NAAGYAARTFVEHGQANGKLCIVTKEPYAPYERPALTKAYLFPLDKKPARLPGFHTCVGA 120

Query: 121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK 180
           GGERQTP+WYKE+GIEM+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEK
Sbjct: 121 GGERQTPDWYKEQGIEMLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEK 180

Query: 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
           IGG LPGVHYIRDVADAD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTTIIFPE 
Sbjct: 181 IGGNLPGVHYIRDVADADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEE 240

Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300
           HLL RLFTPSLAQ+YEQLYQ +GVKFVKGA IK+LE+G D RV AVKLEDGS+I+ DTV+
Sbjct: 241 HLLSRLFTPSLAQKYEQLYQDSGVKFVKGAKIKHLESGPDSRVTAVKLEDGSSIETDTVV 300

Query: 301 L 301
           +
Sbjct: 301 I 301

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110265126|gb|ABG57052.1| chloroplast monodehydroascorbate reductase [Solanum lycopersicum]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/301 (79%), Positives = 266/301 (88%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGG 60
           MA+  N++S K GLSLWCPQS  L+RI   S  +   R   VA SSF NENRE+V+VGGG
Sbjct: 1   MATTPNTMSIKQGLSLWCPQSAVLNRISRVSVPSRSFRRSFVAASSFDNENREYVVVGGG 60

Query: 61  NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS 120
           NAAGYAARTFVEHG A+G+LCIV+KE YAPYERPALTK YLFPLDKKPARLPGFHTCVG+
Sbjct: 61  NAAGYAARTFVEHGQANGKLCIVTKEPYAPYERPALTKAYLFPLDKKPARLPGFHTCVGA 120

Query: 121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK 180
           GGERQTP+WYKE+GIEM+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEK
Sbjct: 121 GGERQTPDWYKEQGIEMLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEK 180

Query: 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
           IGG LPGVHYIRDVADAD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTTIIFPE 
Sbjct: 181 IGGNLPGVHYIRDVADADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEE 240

Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300
           HLL RLFTPSLAQ+YEQLYQ +GVKFVKGA IK+LE+G D RV AVKLEDGS+I+ DTV+
Sbjct: 241 HLLSRLFTPSLAQKYEQLYQDSGVKFVKGAKIKHLESGPDSRVTAVKLEDGSSIETDTVV 300

Query: 301 L 301
           +
Sbjct: 301 I 301

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46093473|dbj|BAD14933.1| monodehydroascorbate reductase [Brassica oleracea]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/305 (79%), Positives = 264/305 (86%), Gaps = 6/305 (1%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
           MA  S +L  K GLSLWCP SPSL R    R S        RG V A  SFANENREFVI
Sbjct: 1   MALASTTLPAKTGLSLWCPTSPSLARRLPARFSPIGSRIASRGVVTA--SFANENREFVI 58

Query: 57  VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
           +GGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 59  IGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 118

Query: 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
           CVG GGERQTP+WYKEKGIEMIY+DPVT  D EKQTL TN+GK LKYGSLI+ATGCTASR
Sbjct: 119 CVGGGGERQTPDWYKEKGIEMIYEDPVTGADFEKQTLTTNTGKQLKYGSLIIATGCTASR 178

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
           FP+KIGG LPGVHYIR+VADAD+LISSL K+KKVV+VGGGYIGMEVAAAAV W LDTTI+
Sbjct: 179 FPDKIGGNLPGVHYIREVADADSLISSLGKSKKVVIVGGGYIGMEVAAAAVAWNLDTTIV 238

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
           FPE+ LLQRLFTPSLAQRYE+LY+QNGVKFVKGASI NLEAGSDGRV AVKL DGSTI+A
Sbjct: 239 FPEDQLLQRLFTPSLAQRYEELYRQNGVKFVKGASINNLEAGSDGRVTAVKLADGSTIEA 298

Query: 297 DTVIL 301
           DTV++
Sbjct: 299 DTVVI 303

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840097|ref|XP_002887930.1| hypothetical protein ARALYDRAFT_474964 [Arabidopsis lyrata subsp. lyrata] gi|297333771|gb|EFH64189.1| hypothetical protein ARALYDRAFT_474964 [Arabidopsis lyrata subsp. lyrata]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/305 (78%), Positives = 265/305 (86%), Gaps = 6/305 (1%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSL---HRIRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
           MA  S +L  + GLSLWCP SPSL    R R S        RG V A  SFANENREFVI
Sbjct: 1   MALASTTLPTRSGLSLWCPSSPSLARRFRARFSPIGSRIASRGLVTA--SFANENREFVI 58

Query: 57  VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
           VGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 59  VGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 118

Query: 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
           CVG GGERQTP+WYKEKGIE+IY+DPVT  + EKQTL T++GK LKYGSLI+ATGCTASR
Sbjct: 119 CVGGGGERQTPDWYKEKGIEVIYEDPVTGANFEKQTLTTDTGKQLKYGSLIIATGCTASR 178

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
           FP+KIGG LPGVHYIR+VADAD+LI+SL KAKKVV+VGGGYIGMEVAAAAV W LDTTI+
Sbjct: 179 FPDKIGGSLPGVHYIREVADADSLIASLGKAKKVVIVGGGYIGMEVAAAAVAWNLDTTIV 238

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
           FPE+ LLQRLFTPSLAQ+YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVKL DGSTI+A
Sbjct: 239 FPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEA 298

Query: 297 DTVIL 301
           DTV++
Sbjct: 299 DTVVI 303

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
TAIR|locus:2195503	493	MDAR6 "monodehydroascorbate re	0.977	0.606	0.763	9.5e-121
TAIR|locus:2086430	488	MDAR4 "monodehydroascorbate re	0.803	0.504	0.460	3.6e-57
TAIR|locus:2144588	435	ATMDAR2 [Arabidopsis thaliana	0.807	0.567	0.434	3.6e-50
TAIR|locus:2085176	466	MDAR1 "monodehydroascorbate re	0.771	0.506	0.438	2.5e-49
TAIR|locus:2100143	441	MDHAR "monodehydroascorbate re	0.800	0.555	0.385	1e-45
TIGR_CMR|SPO_3737	403	SPO_3737 "pyridine nucleotide-	0.754	0.573	0.298	9.7e-25
UNIPROTKB|P95146	411	Rv1869c "Probable reductase" [	0.761	0.566	0.310	5.5e-23
UNIPROTKB|P17052	385	alkT "Rubredoxin-NAD(+) reduct	0.754	0.6	0.306	1.9e-21
UNIPROTKB|D5IGG6	414	fdr "Ferredoxin--NAD(P)(+) red	0.764	0.565	0.313	5.3e-21
UNIPROTKB|Q9L4M8	385	alkT "Rubredoxin-NAD(+) reduct	0.754	0.6	0.306	9.6e-21

TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
 Identities = 233/305 (76%), Positives = 257/305 (84%)

Query:     1 MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
             MA  S +L  K GLSLWCP SPSL R    R S        R  V A  SFANENREFVI
Sbjct:     8 MALASTTLPTKSGLSLWCPSSPSLARRFPARFSPIGSRIASRSLVTA--SFANENREFVI 65

Query:    57 VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
             VGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct:    66 VGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 125

Query:   117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
             CVG GGERQTP+WYKEKGIE+IY+DPV   D EKQTL T++GK LKYGSLI+ATGCTASR
Sbjct:   126 CVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASR 185

Query:   177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
             FP+KIGG+LPGVHYIR+VADAD+LI+SL KAKK       YIGMEVAAAAV W LDTTI+
Sbjct:   186 FPDKIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIV 245

Query:   237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
             FPE+ LLQRLFTPSLAQ+YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVKL DGSTI+A
Sbjct:   246 FPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEA 305

Query:   297 DTVIL 301
             DTV++
Sbjct:   306 DTVVI 310

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 116/252 (46%), Positives = 167/252 (66%)

Query:    54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
             +VI+GGG AAGYAA  F   G++DG LCI+S+E  APYERPAL+KG+L P  + PARLP 
Sbjct:     7 YVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLP--EAPARLPS 64

Query:   114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
             FHTCVG+  E+ TP+WYK+ GIE++    V S+D+ ++TL++++G+ + Y  LI+ATG  
Sbjct:    65 FHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATGAR 124

Query:   174 ASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXX--YIGMEVAAAAVGW 229
             A +  E    G     V Y+RD+ADA+ L + ++ +           YIGME AA+ V  
Sbjct:   125 ALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVIN 184

Query:   230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289
             K++ T++FPE H + RLFTP +A  YE  Y+  GVKF+KG  + + E  S+ +V AV L+
Sbjct:   185 KINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLK 244

Query:   290 DGSTIDADTVIL 301
             DGS + AD V++
Sbjct:   245 DGSHLPADLVVV 256

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IMP;IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;IMP;TAS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 110/253 (43%), Positives = 152/253 (60%)

Query:    53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
             ++VIVGGG AAGYAAR F   G+  G L I+S+E   PYERPAL+KGY+  L+ K A LP
Sbjct:     8 KYVIVGGGVAAGYAAREFFNQGVKPGELAIISREQVPPYERPALSKGYIH-LENK-ATLP 65

Query:   113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
              F+   G GGERQ P+WYKEKGIE+I    +   D+  +TL++ +G++ KY +L+ ATG 
Sbjct:    66 NFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGS 125

Query:   173 TASRFPE--KIGGYLPGVHYIRDVADADALISSLE-KAK-KXXXXXXXYIGMEVAAAAVG 228
             +  R  +    G     + Y+R++ DAD L  ++E K K K       YIG+E+ AA   
Sbjct:   126 SVIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKA 185

Query:   229 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 288
               LD T+++PE   + RLFT  +A  YE  Y   G+  VKG         S+G V  VKL
Sbjct:   186 NNLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKL 245

Query:   289 EDGSTIDADTVIL 301
             +DG T++AD VI+
Sbjct:   246 KDGRTLEADIVIV 258

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 106/242 (43%), Positives = 148/242 (61%)

Query:    64 GYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGE 123
             GYAA+ F   G+  G L ++SKEA APYERPAL+KGYLFP  +  ARLPGFH CVGSGGE
Sbjct:    50 GYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFP--EGAARLPGFHCCVGSGGE 107

Query:   124 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KI 181
             +  PE YK+KGIE+I    +   D+  ++L++ +G + KY +LI+ATG T  R  +    
Sbjct:   108 KLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVK 167

Query:   182 GGYLPGVHYIRDVADADALISSLEKAK--KXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 239
             G     + Y+R++ DAD L+ +++  K  K       YIG+E++A      LD T++FPE
Sbjct:   168 GADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPE 227

Query:   240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTV 299
                + RLFT  +A  YE  Y   GVK +KG       A  +G V  V+L+DG T++AD V
Sbjct:   228 PWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIV 287

Query:   300 IL 301
             I+
Sbjct:   288 IV 289

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;TAS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 98/254 (38%), Positives = 147/254 (57%)

Query:    53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
             ++VI+GGG A GYAAR F   G+  G L I+SKE   P+ERP LTK Y+  L+  P  L 
Sbjct:     8 KYVIIGGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKVYI-DLEVNPT-LA 65

Query:   113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
               + C G+G  +Q P WYKEKGI++I    +   D+  +TL+++ GK+ KY +L++ATG 
Sbjct:    66 NIYVCAGTGEAKQYPNWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGS 125

Query:   173 TASRFPEKIG---GYLPGVHYIRDVADADALISSLE---KAKKXXXXXXXYIGMEVAAAA 226
             T  R  E IG     +  + Y+R++ D+D L  ++E   +  K       ++G+E+++A 
Sbjct:   126 TNIRLSE-IGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSAL 184

Query:   227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 286
                  + T++FPE  L+ R FT  +A  YE  Y   G+K +KG         SDG V  V
Sbjct:   185 RANNHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEV 244

Query:   287 KLEDGSTIDADTVI 300
             KLEDG T++A+ V+
Sbjct:   245 KLEDGRTLEANIVV 258

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009610 "response to symbiotic fungus" evidence=IEP

GO:0043903 "regulation of symbiosis, encompassing mutualism through parasitism" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 74/248 (29%), Positives = 120/248 (48%)

Query:    55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
             V++G G A         + G  +G + ++  E   PY+RP L+K YL   + +  RL  F
Sbjct:     5 VVIGAGQAGASLVARLRKDGF-EGEITLIGAEPVPPYQRPPLSKAYLLG-EMEKERL--F 60

Query:   115 HTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
                         PE +Y E+ I +     V++ID   +T ++  G+++ Y  L + TG  
Sbjct:    61 ----------LRPESFYAEQNIALRLNARVSAIDPAAKT-VSLGGEVIPYDQLALTTGSE 109

Query:   174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 233
               R P  IGG L GVH +RD+AD DA+  S+ +  +       YIG+E AA      +  
Sbjct:   110 PRRLPAAIGGDLAGVHVVRDLADIDAMAPSVTEGARALIVGGGYIGLEAAAVCAKRGVQV 169

Query:   234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293
             T++   + +LQR+  P  +  +  L+  +GV   +G  +  L  G+ GRV    L DGS 
Sbjct:   170 TLVEMADRILQRVAAPETSAYFRALHTGHGVDIREGVGLTRL-IGAQGRVTGAVLTDGSE 228

Query:   294 IDADTVIL 301
             +  D V++
Sbjct:   229 LPVDLVVV 236

GO:0008152 "metabolic process" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 267 (99.0 bits), Expect = 5.5e-23, P = 5.5e-23
 Identities = 77/248 (31%), Positives = 122/248 (49%)

Query:    54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
             FVIVGGG  AG  A   +      GR+ +   E + PY+RP L+K +L    KK   L  
Sbjct:     7 FVIVGGG-LAGAKAVEALRRSDFGGRIILFGDEEHLPYDRPPLSKEFL--AGKKS--LSD 61

Query:   114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
             F          QT +WY++  +++     V+S+D    T+    G  ++Y  L++ATG +
Sbjct:    62 FTI--------QTSDWYRDHDVDVRLGVRVSSLDRSAHTVELPDGAAVRYDKLLLATG-S 112

Query:   174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 233
             A R P   G    GVHY+R   DA AL S L +          +IG+EVAA+A    +D 
Sbjct:   113 APRRPPIPGSDAAGVHYLRSYNDAVALNSVLVQGSSLAVVGAGWIGLEVAASARQRGVDV 172

Query:   234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293
             T++      L      ++ + +  L++  GV       ++ + A +DG+   +K+ DGST
Sbjct:   173 TVVETAIQPLLAALGEAVGKVFADLHRDQGVDLRLQTQLEEITA-ADGKATGLKMRDGST 231

Query:   294 IDADTVIL 301
             + AD V++
Sbjct:   232 VAADAVLV 239

GO:0005576 "extracellular region" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P17052 alkT "Rubredoxin-NAD(+) reductase" [Pseudomonas oleovorans (taxid:301)]

 Score = 252 (93.8 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 76/248 (30%), Positives = 120/248 (48%)

Query:    55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
             V+VG G A   AA    ++G   G + I S+E+ APY+RP L+K +L     + A +P  
Sbjct:     4 VVVGAGTAGVNAAFWLRQYGYK-GEIRIFSRESVAPYQRPPLSKAFLTSEIAESA-VP-- 59

Query:   115 HTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
                         PE +Y    I +    P+ SID+ ++ + +  GK   Y  LI+AT  +
Sbjct:    60 ----------LKPEGFYTNNNITISLNTPIVSIDVGRKIVSSKDGKEYAYEKLILATPAS 109

Query:   174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 233
             A R   + G  L GV Y+R + DA  L   L ++          IG+EVA+AAVG     
Sbjct:   110 ARRLTCE-GSELSGVCYLRSMEDAKNLRRKLVESASVVVLGGGVIGLEVASAAVGLGKRV 168

Query:   234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293
             T+I     ++ R+ TP+ A       +  G++F   A + +++ G +G V    LE G  
Sbjct:   169 TVIEATPRVMARVVTPAAANLVRARLEAEGIEFKLNAKLTSIK-GRNGHVEQCVLESGEE 227

Query:   294 IDADTVIL 301
             I AD +++
Sbjct:   228 IQADLIVV 235

GO:0015046 "rubredoxin-NADP reductase activity" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

UNIPROTKB|D5IGG6 fdr "Ferredoxin--NAD(P)(+) reductase fdr" [Sphingomonas sp. (taxid:28214)]

 Score = 250 (93.1 bits), Expect = 5.3e-21, P = 5.3e-21
 Identities = 78/249 (31%), Positives = 115/249 (46%)

Query:    53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
             + VIVG G+     A    ++G A G + I+  E   PYERP L+K YL       A   
Sbjct:     7 DVVIVGAGHGGAQTAIALRQNGFA-GTIAIIGAEPDLPYERPPLSKEYL-------AAEK 58

Query:   113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
             GF   +     R    W  ++ I M     V  +D  ++ +    G+ + YG L+   G 
Sbjct:    59 GFERIL----IRPASFW-NDRHIAMHLGCAVERVDPTQRLVFLADGRSMGYGDLVWCAGG 113

Query:   173 TASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLD 232
             +A R  +  G  L GVHY+R  AD DAL + L    K       YIG+E AA    +  +
Sbjct:   114 SARRL-DCTGHDLGGVHYVRTRADTDALAAELPGVSKVVIIGGGYIGLEAAAVMAKFGKN 172

Query:   233 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 292
              T+I   + +L R+    L++ +E+ ++  GV       +  L  G DGRV  V+L D  
Sbjct:   173 VTLIEALDRVLARVAGEPLSRFFEEKHRSRGVDVRLRTKVGCL-LGQDGRVTHVELNDAD 231

Query:   293 TIDADTVIL 301
              I AD VI+
Sbjct:   232 PIPADLVIV 240

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=ISS

GO:0008860 "ferredoxin-NAD+ reductase activity" evidence=ISS

GO:0046232 "carbazole catabolic process" evidence=IDA

GO:0050661 "NADP binding" evidence=ISS

GO:0051287 "NAD binding" evidence=ISS

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

UNIPROTKB|Q9L4M8 alkT "Rubredoxin-NAD(+) reductase" [Pseudomonas putida (taxid:303)]

 Score = 246 (91.7 bits), Expect = 9.6e-21, P = 9.6e-21
 Identities = 76/248 (30%), Positives = 118/248 (47%)

Query:    55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
             VIVG G A   AA    ++G   G + ++S+E+  PY+RP L+K +L     + A +P  
Sbjct:     4 VIVGAGTAGVNAAFWLRQYGYKGG-IRLLSRESVTPYQRPPLSKAFLTSETAESA-IP-- 59

Query:   115 HTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
                         PE +Y    I +     + SID+ ++ +    G+   Y  LI+ATG +
Sbjct:    60 ----------LKPESFYTNNNISISLNTQIVSIDVGRKVVAAKDGEEYAYEKLILATGAS 109

Query:   174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 233
             A R   + G  L GV Y+R + DA  L   L ++          IG+EVA+AAVG     
Sbjct:   110 ARRLTCE-GSELSGVCYLRSMEDAKNLRRKLVESASVVVLGGGVIGLEVASAAVGIGRRV 168

Query:   234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293
             T+I     ++ R+ TP+ A       +  GV F   A + +++ G +G V    LE G  
Sbjct:   169 TVIEAAPRVMARVVTPAAANLVRARLEAEGVGFKLNAKLTSIK-GRNGHVNQCVLESGEK 227

Query:   294 IDADTVIL 301
             I AD +I+
Sbjct:   228 IQADLIIV 235

GO:0015046 "rubredoxin-NADP reductase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92947	MDARP_ARATH	1, ., 6, ., 5, ., 4	0.7803	0.9771	0.6064	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.6.5.4	0.914
3rd Layer	1.6.5	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002544001 SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (490 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	306
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	7e-43
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	1e-35
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	3e-34
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	2e-28
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	2e-24
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	2e-18
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	2e-18
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	8e-17
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	5e-16
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	7e-13
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	5e-12
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	1e-11
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	2e-10
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	3e-09
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	3e-08
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	4e-08
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	8e-08
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	2e-07
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	1e-06
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	1e-06
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	4e-06
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	6e-06
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	1e-05
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	2e-05
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	2e-05
TIGR02053	463	TIGR02053, MerA, mercuric reductase	3e-05
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	3e-05
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	1e-04
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	1e-04
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	2e-04
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	2e-04
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	2e-04
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	3e-04
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	4e-04
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	5e-04
PRK00711	416	PRK00711, PRK00711, D-amino acid dehydrogenase sma	0.001
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	0.001
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	0.003
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	0.003
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	0.004

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  148 bits (375), Expect = 7e-43
 Identities = 77/250 (30%), Positives = 115/250 (46%), Gaps = 20/250 (8%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           VI+GGG  AG AA   +       ++ ++ +E    Y R  L K  L  L+         
Sbjct: 3   VIIGGG-PAGLAAAIRL--ARLGLKVALIEREGGTCYNRGCLPKKLL--LEVAEGLELA- 56

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATG 171
                  G     E YKE G+E++    V  ID  ++T++      G+ + Y  LI+ATG
Sbjct: 57  ------IGLALPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATG 110

Query: 172 CTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 231
                    I G    V  +R V D+D ++  LE  K+VVVVGGGYIG+E+AAA      
Sbjct: 111 ARPRIPG--IPGV--EVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGK 166

Query: 232 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG 291
           + T++   + LL R      A   E+L +   +       +  +    DG+V  VKL DG
Sbjct: 167 EVTVVERRDRLLARADDEISAALLEKLEKL-LLGVTVLLVVVVVVKVGDGKVVEVKLGDG 225

Query: 292 STIDADTVIL 301
             +DAD V++
Sbjct: 226 EELDADVVLV 235

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score =  132 bits (334), Expect = 1e-35
 Identities = 74/251 (29%), Positives = 110/251 (43%), Gaps = 19/251 (7%)

Query: 54  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
            VIVGGG A   AA T     +A     ++ +E    Y R  L+      +      L  
Sbjct: 1   IVIVGGGAAGLSAATTLRRLLLAAEIT-LIGREPKYSYYRCPLSLYVGGGI-ASLEDLRY 58

Query: 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
                        P + +  GI++     VTSID E + ++ + G++ +Y  L++ATG  
Sbjct: 59  P------------PRFNRATGIDVRTGTEVTSIDPENKVVLLDDGEI-EYDYLVLATGAR 105

Query: 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT 233
               P        GV  +R   DA+AL    E  K VVVVG G IG+E A AA       
Sbjct: 106 PRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKV 162

Query: 234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGS 292
           T+I   + L  +L  P +A+   +L ++ GV+ + G  +  +E   +  V   V   DG 
Sbjct: 163 TLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE 222

Query: 293 TIDADTVILLP 303
            I AD VI+ P
Sbjct: 223 EIKADLVIIGP 233

Length = 415

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score =  128 bits (322), Expect = 3e-34
 Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 24/253 (9%)

Query: 51  NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
            +  +IVGGG AA  AA +  + G   G L + S E + PYERP L+K  L     +  +
Sbjct: 3   EKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQ 61

Query: 111 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 170
           +                 W++E  + +     + ++  + + L+  +G+   +  L +AT
Sbjct: 62  V-------------LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIAT 108

Query: 171 GCTASRFP--EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 228
           G  A   P  + +G        +R   DA  L   L+  + VV+VG G IG+E+AA+A  
Sbjct: 109 GAAARPLPLLDALG---ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQ 165

Query: 229 WKLDTTIIFPENHLLQRLFTPSLAQRY-EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 287
            +   T+I     ++ R   P   QRY  Q +QQ GV+ +   +I   E   DG    + 
Sbjct: 166 RRCKVTVIELAATVMGRN-APPPVQRYLLQRHQQAGVRILLNNAI---EHVVDGEKVELT 221

Query: 288 LEDGSTIDADTVI 300
           L+ G T+ AD VI
Sbjct: 222 LQSGETLQADVVI 234

Length = 396

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score =  115 bits (289), Expect = 2e-28
 Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 28/255 (10%)

Query: 52  REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARL 111
           ++ VI+G G A        +E       + +  +E    Y R  L+              
Sbjct: 4   QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS------------- 50

Query: 112 PGFHTCVGSGGER------QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGS 165
                 V +G +          +WY+E GI +   + V  ID   + + T++G+ + Y  
Sbjct: 51  ------VLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDK 104

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
           LI+ATG      P   G  LPGV   R + D +A++      KK VV+GGG +G+E A  
Sbjct: 105 LIIATGSYPFILPIP-GSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARG 163

Query: 226 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285
                ++ T++     L++R    +  +   +  +  G+K +   + +  E   + +V  
Sbjct: 164 LKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTE--EIVGEDKVEG 221

Query: 286 VKLEDGSTIDADTVI 300
           V+  DG+ I AD V+
Sbjct: 222 VRFADGTEIPADLVV 236

Length = 793

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score =  102 bits (256), Expect = 2e-24
 Identities = 58/247 (23%), Positives = 111/247 (44%), Gaps = 16/247 (6%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           V+VG G A        ++       + I  +E +  Y R  L+       D     L   
Sbjct: 2   VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK 61

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
                        +WY++ GI +   + V  ID +++ +IT++G+ L Y  LI+ATG   
Sbjct: 62  -------------DWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYP 108

Query: 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 234
              P   G    GV+  R + D DA+++  ++ KK  V+GGG +G+E A       +D +
Sbjct: 109 FILPIP-GADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVS 167

Query: 235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI 294
           +I     L+ +    +  +  ++  +Q G+ F+       +E     +   ++ +DGS++
Sbjct: 168 VIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEK--DTVEIVGATKADRIRFKDGSSL 225

Query: 295 DADTVIL 301
           +AD +++
Sbjct: 226 EADLIVM 232

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 84.6 bits (210), Expect = 2e-18
 Identities = 59/278 (21%), Positives = 101/278 (36%), Gaps = 61/278 (21%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPALTKGYLFPLDKKPARLP 112
           VI+GGG     AA+        D  + +V +  Y  +      +  G    L +    +P
Sbjct: 7   VILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFTPLLYEVATG---TLSESEIAIP 62

Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
                             ++ G     Q  VT ID + + +       + Y  L+VA G 
Sbjct: 63  -------------LRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGS 109

Query: 173 TASRFPEKIGGYLPGV----HYIRDVADADA----LISSLEKAKK---------VVVVGG 215
             + F       +PG       ++ + DA      L+ + EKA +         +V+VGG
Sbjct: 110 ETNYFG------IPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGG 163

Query: 216 GYIGMEVAAAAVGWKLDTTIIFPEN------HLLQRL------FTPSLAQRYEQLYQQNG 263
           G  G+E+A             F  +       L++        F P L++  E+  ++ G
Sbjct: 164 GPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLG 223

Query: 264 VKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTVI 300
           V+ + G  +  +          V L+DG   I ADTV+
Sbjct: 224 VEVLLGTPVTEVTPDG------VTLKDGEEEIPADTVV 255

Length = 405

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 13/185 (7%)

Query: 125 QTPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFP 178
            TPE + K++GI++     V  ++ E+QT++     TN      Y  LI++ G +    P
Sbjct: 48  YTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV-P 106

Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
              G  L  V  +R++ D DA+   ++  K + VV++GGGYIG+E+A A      + T+I
Sbjct: 107 NIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLI 166

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
                +L +LF   + Q  E+  +++ +       + ++E    G         G    A
Sbjct: 167 HRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIE----GEERVKVFTSGGVYQA 222

Query: 297 DTVIL 301
           D VIL
Sbjct: 223 DMVIL 227

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 80.1 bits (198), Expect = 8e-17
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 11/183 (6%)

Query: 126 TPEWYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEK 180
           TPE + + GI++  +  V  +D + +T+      T S     Y  L++ATG      P  
Sbjct: 62  TPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR-PIIPPI 120

Query: 181 IGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
               L  V+ ++ + D  AL   L  E+ K +V++G G+IG+E   AA     +  II  
Sbjct: 121 KNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQL 180

Query: 239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 298
           E+ +L   F   +    E+  ++NGV+      +K+L    + +V  V   D    +AD 
Sbjct: 181 EDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVV-TDKGEYEADV 237

Query: 299 VIL 301
           VI+
Sbjct: 238 VIV 240

Length = 444

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 71.5 bits (176), Expect = 5e-16
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268
           +VVVVGGGYIG+E A+A        T++   + LL R F   +A+  ++  ++NG++ + 
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59

Query: 269 GASIKNLEAGSDGRVAAVKLEDG 291
             +++ +E   DG V  +K  DG
Sbjct: 60  NTTVEEIEGNGDGVVVKLKTGDG 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 68.0 bits (167), Expect = 7e-13
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 135 IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 194
           + +     VT ID E Q + +  G   +Y  L++ATG +A   P      +  ++  ++ 
Sbjct: 73  LRLFPHTWVTDIDAEAQVVKSQ-GNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEY 131

Query: 195 ADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLA 252
             A+  +     A++V+VVGGG IG E+A      G  +  T++     LL  L  P ++
Sbjct: 132 RAAETQLRD---AQRVLVVGGGLIGTELAMDLCRAGKAV--TLVDNAASLLASLMPPEVS 186

Query: 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300
            R +    + GV  +  + ++ LE    G      L+ G +I+ D VI
Sbjct: 187 SRLQHRLTEMGVHLLLKSQLQGLEKTDSGIR--ATLDSGRSIEVDAVI 232

Length = 377

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 65.7 bits (161), Expect = 5e-12
 Identities = 66/278 (23%), Positives = 114/278 (41%), Gaps = 50/278 (17%)

Query: 55  VIVGGGNAAGY-AARTFVEHGM------ADGRL--------CIVSK------EAYAPYER 93
           V++G G  AGY AA    + G+         RL        CI SK      E       
Sbjct: 8   VVIGAG-PAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARH 66

Query: 94  PALTKGYLFPLDKKP-----ARLPGFHTCVGSGGERQTPEWYKEKGIEMIY-----QDPV 143
            A   G    + K       AR       +  G E       K+ G+++I       DP 
Sbjct: 67  AAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEG----LLKKNGVDVIRGEARFVDP- 121

Query: 144 TSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS 203
            ++++  +   T +       ++I+ATG +  R P   G  + G   +    D+   +  
Sbjct: 122 HTVEVTGEDKETITAD-----NIIIATG-SRPRIPPGPG--IDGARIL----DSSDALFL 169

Query: 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 263
           LE  K +V+VGGGYIG+E A+         T++   + +L     P +++   +  ++ G
Sbjct: 170 LELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKGG 228

Query: 264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
           VK +    +  +E   DG +  ++  +G TI+AD V++
Sbjct: 229 VKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLV 266

Length = 454

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 29/147 (19%), Positives = 62/147 (42%), Gaps = 7/147 (4%)

Query: 155 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG 214
            N  + L+  ++I+ATG      P    G       +  V  +   ++  E  + +V++G
Sbjct: 124 ENGEETLEAKNIIIATGSRPRSLP----GPFDFDGKV--VITSTGALNLEEVPESLVIIG 177

Query: 215 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN 274
           GG IG+E A+         T+I   + +L       +++  ++  ++ GVK +    +  
Sbjct: 178 GGVIGVEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVLQKALKKKGVKILTNTKVTA 236

Query: 275 LEAGSDGRVAAVKLEDGSTIDADTVIL 301
           +E   D      K  +  T+  + V++
Sbjct: 237 VEKNDDQVTYENKGGETETLTGEKVLV 263

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 60.9 bits (149), Expect = 2e-10
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           K+V VVG GYI +E A    G   +T +         R F P + +   +  ++ G++  
Sbjct: 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFV-RGDAPLRGFDPDIRETLVEEMEKKGIRLH 226

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
             A  K +E  +DG +  + LEDG T+  D +I 
Sbjct: 227 TNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIW 259

Length = 450

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 25/186 (13%)

Query: 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186
             +Y++ GI+++  +   +I+ +++ + +++G+ + Y  LI+ATG      P K G    
Sbjct: 66  EGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK-GSETQ 124

Query: 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL 246
                R + D +A+ +   ++K+  VVGGG +G+E A A     ++T +I          
Sbjct: 125 DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVI---------E 175

Query: 247 FTPSLAQRYEQLYQQNGVKF--------VKGASIKN----LEAGSDGRVAAVKLEDGSTI 294
           F P L    EQL Q  G +         V+  + KN    ++ G + R   ++  DGS +
Sbjct: 176 FAPMLMA--EQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEAR-KTMRFADGSEL 232

Query: 295 DADTVI 300
           + D ++
Sbjct: 233 EVDFIV 238

Length = 847

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 12/127 (9%)

Query: 126 TPEWYKE-KGIEMIYQDPVTSIDIEKQTL-----ITNSGKLLKYGSLIVATGCTASRFPE 179
           TPE + + K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 63  TPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGF 122

Query: 180 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
           +          +R++ D DA+   ++  +  K +VVG GYI +EV        L  T+I 
Sbjct: 123 ES----DITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIH 178

Query: 238 PENHLLQ 244
             + + +
Sbjct: 179 RSDKINK 185

Length = 438

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 62/275 (22%), Positives = 114/275 (41%), Gaps = 47/275 (17%)

Query: 53  EFVIVGGGN--------AAGYAARTFVEHGMADGRLCI----VSKE----AYAPYERPAL 96
           +++++GGG+        AA + A+  +      G  C+    V K+    A    ER   
Sbjct: 4   DYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHD 63

Query: 97  TKGYLFPL-DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE------ 149
              Y F    +     P           ++  + Y ++ +  IYQ  +    ++      
Sbjct: 64  AADYGFYQNLENTFNWPEL---------KEKRDAYVDR-LNGIYQKNLEKNKVDVIFGHA 113

Query: 150 ---KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 206
              K   +  +G+      +++ATG   S FPE I G   G        D+D   +  E 
Sbjct: 114 RFTKDGTVEVNGRDYTAPHILIATGGKPS-FPENIPGAELGT-------DSDGFFALEEL 165

Query: 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266
            K+VV+VG GYI +E+A    G   +T ++     +L R F   +++   + Y++ G+  
Sbjct: 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINV 224

Query: 267 VKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTVI 300
            K +    +E   +G++  +  EDG +I D D +I
Sbjct: 225 HKLSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELI 258

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 52.8 bits (128), Expect = 8e-08
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 25/155 (16%)

Query: 155 TNSGKLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADAD-ALISSLEKA-KKVV 211
            +  +     ++I+ATG      P  +I G        R +  +D AL  +L++  K +V
Sbjct: 127 EDGEQTYTAKNIILATGSRPRELPGIEIDG--------RVIWTSDEAL--NLDEVPKSLV 176

Query: 212 VVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268
           V+GGGYIG+E A+A   +     + TI+     +L       +++  E+  ++ G+K   
Sbjct: 177 VIGGGYIGVEFASA---YASLGAEVTIVEALPRILP-GEDKEISKLAERALKKRGIKIKT 232

Query: 269 GASIKNLEAGSDGRVAAVKLEDG---STIDADTVI 300
           GA  K +E   DG    V LEDG    T++AD V+
Sbjct: 233 GAKAKKVEQTDDG--VTVTLEDGGKEETLEADYVL 265

Length = 462

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 30/161 (18%), Positives = 65/161 (40%), Gaps = 13/161 (8%)

Query: 141 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 200
           D VT +      L  + G++++  ++++A G      P       P V        +D  
Sbjct: 183 DEVTIVSAGVSQL--DDGQVIEGKNILIAVGNK----PI-----FPDVKGKEFTISSDDF 231

Query: 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260
              +++AK++ + G GYI +E+         ++  IF   + L R F  ++    E   +
Sbjct: 232 FK-IKEAKRIGIAGSGYIAVELINVVNRLGAESY-IFARGNRLLRKFDETIINELENDMK 289

Query: 261 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
           +N +  +  A+++ +E   +  +     +       D VI 
Sbjct: 290 KNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIY 330

Length = 561

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 25/146 (17%)

Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYI 218
           ++++ATG   SR P      +PGV     +   D L++S     L+K  K + V+GGG I
Sbjct: 133 NIVIATG---SRVPP-----IPGV----WLILGDRLLTSDDAFELDKLPKSLAVIGGGVI 180

Query: 219 GMEVAAA--AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 276
           G+E+  A   +G  +  T+    + +L  L  P ++++ +++  +   K   GA + ++E
Sbjct: 181 GLELGQALSRLG--VKVTVFERGDRIL-PLEDPEVSKQAQKILSKE-FKIKLGAKVTSVE 236

Query: 277 AGSDGRVAAVKLEDGS-TIDADTVIL 301
              D +V  ++    + TI+AD V++
Sbjct: 237 KSGDEKVEELEKGGKTETIEADYVLV 262

Length = 460

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 12/139 (8%)

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGYIGMEVAA 224
           L++ATG   SR P ++ G      Y+  ++  +AL  SLE   K +V+VGGG IG+E A+
Sbjct: 146 LLIATG---SR-PVELPGLPFDGEYV--ISSDEAL--SLETLPKSLVIVGGGVIGLEWAS 197

Query: 225 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284
               + ++ T++   + +L       L++   +L ++ GV+ V GA +  L    DG V 
Sbjct: 198 MLADFGVEVTVVEAADRILP-TEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVL 256

Query: 285 AVKLEDGS--TIDADTVIL 301
            V   +G   T++AD V++
Sbjct: 257 IVAEHNGEEKTLEADKVLV 275

Length = 472

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 194 VADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRL---FT 248
           + D+D+++S     + +++ G G IG E A+  AA+G K   T+I   + LL  L    +
Sbjct: 162 IYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVK--VTLINTRDRLLSFLDDEIS 219

Query: 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTV 299
            +L+         +GV       ++ +E G DG +  V L+ G  I AD +
Sbjct: 220 DALSYHLR----DSGVTIRHNEEVEKVEGGDDGVI--VHLKSGKKIKADCL 264

Length = 461

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           K +++ GGGYI +E A    G  + TT+I+    +L+  F   + +      ++ G++ +
Sbjct: 167 KSILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRG-FDDDMRRGLAAALEERGIRIL 225

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
              SI ++    DGR+ A  L     I AD V+ 
Sbjct: 226 PEDSITSISKDDDGRLKAT-LSKHEEIVADVVLF 258

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 54/274 (19%), Positives = 95/274 (34%), Gaps = 66/274 (24%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           V++GGG+      R +    +   R+ +++  +  PY       G L      P  + G 
Sbjct: 3   VLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYS------GML------PGMIAGH 50

Query: 115 HT-----------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKY 163
           ++              +G                      T ID +++ ++  +   L Y
Sbjct: 51  YSLDEIRIDLRRLARQAGAR--------------FVIAEATGIDPDRRKVLLANRPPLSY 96

Query: 164 GSLIVATGCT----------ASRFPEK-IGGYLPGVHYIRDVADADALISSLEKAKKVVV 212
             L +  G T              P K I  +L     + + ADA          K++ V
Sbjct: 97  DVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP------PGTKRLAV 150

Query: 213 VGGGYIGMEVA-AAAVGWK----LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           VGGG  G+E+A A               +     LL   F   + +   +L  + G++  
Sbjct: 151 VGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPG-FPAKVRRLVLRLLARRGIEVH 209

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
           +GA +     G DG +    L DG T+ AD ++ 
Sbjct: 210 EGAPV---TRGPDGALI---LADGRTLPADAILW 237

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 14/135 (10%)

Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 224
           ++++ TG  ++  P      +PG+   + V D+  + S     +++ ++GGG IG+E A 
Sbjct: 121 TIVINTGAVSNVLP------IPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAG 174

Query: 225 --AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282
               +G K+  T++   + +L R   PS+A   +Q  +++G+ F+  A    ++   DG 
Sbjct: 175 LYNKLGSKV--TVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKN--DGD 229

Query: 283 VAAVKLEDGS-TIDA 296
              V  ED +   DA
Sbjct: 230 QVLVVTEDETYRFDA 244

Length = 438

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 19/151 (12%)

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR-----DVADADALISSLEKAKKVV 211
            G+ L+   + + TG  A+  P      +PG+  +       +   D L   L      V
Sbjct: 128 GGETLRAKRIFINTGARAAI-PP-----IPGLDEVGYLTNETIFSLDELPEHL------V 175

Query: 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 271
           ++GGGYIG+E A     +  + T+I     LL R     +A    ++ ++ G+     A 
Sbjct: 176 IIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNAE 234

Query: 272 IKNLEAGSDGRVAAVKLEDGS-TIDADTVIL 301
              +E   DG    +    G+  I    +++
Sbjct: 235 CIRVERDGDGIAVGLDCNGGAPEITGSHILV 265

Length = 463

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 9/136 (6%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 226
           ++ATG   +  P      +PG+        ++  ++     + + V+GGG IG+E+A A 
Sbjct: 133 LIATGARPAIPP------IPGLKEA-GYLTSEEALALDRIPESLAVIGGGAIGVELAQAF 185

Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 286
                + TI+   + LL R   P ++   E+   + G++ V  A +K +     G++  V
Sbjct: 186 ARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITV 244

Query: 287 KLEDGS-TIDADTVIL 301
           +   G   ++AD +++
Sbjct: 245 EKPGGQGEVEADELLV 260

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 35/208 (16%)

Query: 55  VIVGGGNAAG-YAARTFVEHGMADGRLCIVSKEA--------YAPYER---PALTKGYLF 102
           ++VG G AAG   A   ++ G A   + IV + A        + P+ R   P+   G   
Sbjct: 1   LVVGAG-AAGMAFADHLLDLGDAP--VIIVDRGAQPGGHWRKWYPFVRLHQPSFFYGDFG 57

Query: 103 P-------LDKKPARLPGFHTCVGSGGERQTP-EWY-KEKGIEMIYQDPVTSIDIEK--Q 151
                   +D  P           SG E     E   +  G+ +     VT+++ +    
Sbjct: 58  MPDLNALSIDTSPKWDGKAELA--SGAEIAAYLEDLARRYGLPIRLSTRVTAVERDGGRF 115

Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKI-GGYLPGVHYIRDVADADALISSLEKAKKV 210
            +    G+ ++   ++ ATG  +   P    G    GVH +  +   D       K K V
Sbjct: 116 VVRLTDGETVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDVLERID------LKGKTV 169

Query: 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
            V+GGG+  ++ A   +    D T I  
Sbjct: 170 AVIGGGHTAIDAALNLLDLGKDVTWITR 197

Length = 202

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 55/260 (21%), Positives = 88/260 (33%), Gaps = 71/260 (27%)

Query: 55  VIVGGG----NAAGYAAR------TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 104
           +I+GGG     AA YAAR        +E G   G+L            +    + Y    
Sbjct: 7   IIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQL-----------TKTTDVENY---- 51

Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEK--------GIEMIYQDPVTSIDIEKQT-LIT 155
                  PGF                 E+        G+E++  D V  +++E     + 
Sbjct: 52  -------PGFP-------GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVK 96

Query: 156 NSGKLLKYGSLIVATGCTASRFPEKIGGYLP----GVHYIRDVADADALISSLEKAKKVV 211
                 +  ++I+ATG  A      + G       GV Y    A  D       K K VV
Sbjct: 97  TDKGTYEAKAVIIATG--AGARKLGVPGEEEFEGKGVSY---CATCDGF----FKGKDVV 147

Query: 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 271
           V+GGG   +E A          T++   +      F        E+L +   ++ +    
Sbjct: 148 VIGGGDSAVEEALYLSKIAKKVTLVHRRDE-----FRAEEILV-ERLKKNVKIEVLTNTV 201

Query: 272 IKNLEAGSDGRVAAVKLEDG 291
           +K +  G D  V  V L++ 
Sbjct: 202 VKEIL-GDD--VEGVVLKNV 218

Length = 305

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 25/152 (16%)

Query: 158 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 217
            + + + + I+ATG +           LPG     +V   +  I S E  K +V+ G G 
Sbjct: 131 TETVTFDNAIIATGSSTR--------LLPGTSLSENVVTYEEQILSRELPKSIVIAGAGA 182

Query: 218 IGMEVAAAAVGWKLDTTIIFPENHLLQRLF-------TPSLAQRYEQLYQQNGVKFVKGA 270
           IGME A     + +D TI+      L R         +  +A++Y++L    GVK + G 
Sbjct: 183 IGMEFAYVLKNYGVDVTIV----EFLDRALPNEDAEVSKEIAKQYKKL----GVKILTGT 234

Query: 271 SIKNLEAGSDGRVAAVKLEDGS--TIDADTVI 300
            +++++         V  +DG    ++AD V+
Sbjct: 235 KVESIDDNGSKVTVTVSKKDGKAQELEADKVL 266

Length = 466

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 11/150 (7%)

Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 211
           TL T  G+ +    +++A G +    P  I     GV Y  +    + ++   E  + +V
Sbjct: 121 TLRTGDGEEITGDQIVIAAG-SRPYIPPAIAD--SGVRYHTN----EDIMRLPELPESLV 173

Query: 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 271
           +VGGGYI  E A          TI+     LL+ L    ++ R+ ++ ++   K+     
Sbjct: 174 IVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHL-DEDISDRFTEIAKK---KWDIRLG 229

Query: 272 IKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
                   DG    + L+DGST+ AD +++
Sbjct: 230 RNVTAVEQDGDGVTLTLDDGSTVTADVLLV 259

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 29/159 (18%)

Query: 152 TLITNSGKLLKYGSLIVATGCTASR--FPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209
           TL T  G+ +    +++A G   SR   P  I       H    +     L  SL     
Sbjct: 118 TLRTGDGEEITADQVVIAAG---SRPVIPPVIADSGVRYHTSDTIMRLPELPESL----- 169

Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------FTPSLAQRYEQLYQQN 262
            V+VGGG+I  E A       +  T++     LL+ L       FT   ++R++    +N
Sbjct: 170 -VIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKRWDVRLGRN 228

Query: 263 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
               V G S        DG    ++L+DGST++AD +++
Sbjct: 229 ----VVGVS-------QDGSGVTLRLDDGSTVEADVLLV 256

Length = 451

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 13/136 (9%)

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK-KVVVVGGGYIGMEVAA 224
           +++ATG   S  PE +    PG       +D    I SL K   K ++VG  YIG+E A 
Sbjct: 148 ILIATGGRPS-IPEDV----PGAKEYSITSDD---IFSLSKDPGKTLIVGASYIGLETAG 199

Query: 225 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284
                  D T+      +  R F    +++  +  ++ G  F++G    N+E   D    
Sbjct: 200 FLNELGFDVTVAV--RSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDK--I 255

Query: 285 AVKLEDGSTIDADTVI 300
            V   DG+T   DTV+
Sbjct: 256 KVLFSDGTTELFDTVL 271

Length = 499

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 16/108 (14%)

Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------------LLQRLFTPSLAQRY- 255
            VV++GGG  G+  A       L   +I  E              LL+      LA    
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60

Query: 256 --EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
             E++Y++ GV+ + G  + +++ G    V    +E G  I  D +I+
Sbjct: 61  LPEEVYKEFGVEVLLGTEVVDIDRGE-KTVVLKDVETGREITYDKLII 107

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 45/167 (26%), Positives = 68/167 (40%), Gaps = 37/167 (22%)

Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGVH----YIRDVADADALISSLEKAKKVVVVGGGY 217
            Y ++ + TG    RF    G  L GV+    ++  V  A A    L   K+VVV+GGG 
Sbjct: 225 GYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVAD-YDLPVGKRVVVIGGGN 283

Query: 218 IGMEVAAAAVGWKL---DTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIK 273
             M+ A  A   +L     TI++      +R      A   E  + ++ GV+F   A+  
Sbjct: 284 TAMDAARTAK--RLGAESVTIVY------RRGREEMPASEEEVEHAKEEGVEFEWLAAPV 335

Query: 274 NLEAGSDGRVAAVKLE-----------------DGS--TIDADTVIL 301
            +  G +GRV  V+                   +GS  T+ AD VI 
Sbjct: 336 EIL-GDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIK 381

Length = 457

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 33/141 (23%)

Query: 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV--GWKLDTTII--F 237
            G L  V ++R V + +         K+VVV+GGG   M+ A  A   G + + TI+   
Sbjct: 246 AGVLDAVDFLRAVGEGEPPFLG----KRVVVIGGGNTAMDAARTARRLGAE-EVTIVYRR 300

Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA--------VKLE 289
               +      P+  +  E+   + GV+     +   +E   +G               E
Sbjct: 301 TREDM------PAHDEEIEEA-LREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDE 353

Query: 290 DG---------STIDADTVIL 301
           DG          T++AD V+L
Sbjct: 354 DGRPSPVTGEEETLEADLVVL 374

Length = 564

>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit; Validated

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
           +LFT  LA   EQL    GVKF     +  L     GR+  V+   G  I AD  ++
Sbjct: 201 QLFTQRLAAMAEQL----GVKFRFNTPVDGLLV-EGGRITGVQTGGG-VITADAYVV 251

Length = 416

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 205 EKAKKVVVVGGGYIGMEVAA-----AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 259
           E  ++V+ VGGG+I +E A         G K+        N+++ R F  +L +   +  
Sbjct: 185 EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCY---RNNMILRGFDSTLRKELTKQL 241

Query: 260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
           + NG+  +   +   +   +DG    V  E G T+D D V++
Sbjct: 242 RANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMM 282

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 28/128 (21%)

Query: 195 ADADALISSLEKAKK---VVVVGGGYIGMEVAAAAV-----------------GWKLDTT 234
             A A  +    AK    V+VVGGG  G   AAAA+                 G  LDT 
Sbjct: 196 TGAAARAAEELNAKDPYDVLVVGGGPAG---AAAAIYAARKGIRTGIVAERFGGQVLDTM 252

Query: 235 IIFPENHLLQRLFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293
            I  EN +       P LA   E+  ++  V  +       LE  +   +  V+L +G+ 
Sbjct: 253 GI--ENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAG--LIEVELANGAV 308

Query: 294 IDADTVIL 301
           + A TVIL
Sbjct: 309 LKAKTVIL 316

Length = 517

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 46/176 (26%), Positives = 65/176 (36%), Gaps = 38/176 (21%)

Query: 159 KLLK-YGSLIVATGCTASR---FPEKIGGYLPGVHY--------IRDVADADALISSLEK 206
           +LL  Y ++ + TG    R    P   G  L GVH+         R V   +       K
Sbjct: 224 ELLAEYDAVFLGTGAYKPRDLGIP---GRDLDGVHFAMDFLIQNTRRVLGDETEPFISAK 280

Query: 207 AKKVVVVGGGYIGMEVAAAAV--GWK----LDTTIIFPENHLLQRLFTPSLAQRYEQLY- 259
            K VVV+GGG  GM+    A+  G K     D   + P     +    P    + E    
Sbjct: 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR-NKNNPWPYWPMKLEVSNA 339

Query: 260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLED------------GS--TIDADTVIL 301
            + GV+       K  E G +G+V  VK+              GS   + AD V+L
Sbjct: 340 HEEGVEREFNVQTKEFE-GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLL 394

Length = 471

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 2/112 (1%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
           +PG+     V D+  L++  E    + ++GGGYIG+E A+    +    TI+   +  L 
Sbjct: 136 IPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP 195

Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
           R     +A     + +  GV  +  A ++ + +  + +V          +DA
Sbjct: 196 RE-DRDIADNIATILRDQGVDIILNAHVERI-SHHENQVQVHSEHAQLAVDA 245

Length = 441

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.98
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.98
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.97
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.97
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	99.97
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.96
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.96
PRK06116	450	glutathione reductase; Validated	99.95
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.95
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.95
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.95
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.95
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.95
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.95
PRK06370	463	mercuric reductase; Validated	99.95
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.95
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.95
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.95
PRK10262	321	thioredoxin reductase; Provisional	99.95
PLN02507	499	glutathione reductase	99.95
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.94
PLN02546	558	glutathione reductase	99.94
PTZ00058	561	glutathione reductase; Provisional	99.94
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.94
PRK14694	468	putative mercuric reductase; Provisional	99.94
TIGR02053	463	MerA mercuric reductase. This model represents the	99.94
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.94
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.94
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.94
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.93
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.93
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.93
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.93
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.93
PRK07846	451	mycothione reductase; Reviewed	99.93
PRK13748	561	putative mercuric reductase; Provisional	99.93
PTZ00052	499	thioredoxin reductase; Provisional	99.93
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.92
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.92
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.92
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.92
PRK14727	479	putative mercuric reductase; Provisional	99.92
PRK12831	464	putative oxidoreductase; Provisional	99.92
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.92
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.92
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.92
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.91
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.91
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.91
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.91
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.9
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.9
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.9
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.89
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.89
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.88
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.88
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.88
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.88
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.88
PLN02852	491	ferredoxin-NADP+ reductase	99.87
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.87
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.86
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.86
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.86
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.86
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.86
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.86
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.86
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.84
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.84
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.83
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.83
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.82
PRK13984	604	putative oxidoreductase; Provisional	99.81
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.81
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.8
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.78
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.78
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.74
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.72
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.65
PTZ00188	506	adrenodoxin reductase; Provisional	99.58
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.51
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.5
KOG2755	334	consensus Oxidoreductase [General function predict	99.46
COG0579	429	Predicted dehydrogenase [General function predicti	99.45
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.43
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.42
COG2081	408	Predicted flavoproteins [General function predicti	99.42
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.37
PRK09897	534	hypothetical protein; Provisional	99.35
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.34
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.32
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.31
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.28
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.28
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.23
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.22
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.19
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.19
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.18
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.17
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.16
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.16
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.16
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.15
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.15
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.14
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.14
PRK06847	375	hypothetical protein; Provisional	99.12
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.11
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.1
PRK07233	434	hypothetical protein; Provisional	99.09
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.08
PLN02612	567	phytoene desaturase	99.07
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.06
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.06
PRK05257	494	malate:quinone oxidoreductase; Validated	99.05
PRK07208	479	hypothetical protein; Provisional	99.04
PRK06834	488	hypothetical protein; Provisional	99.04
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.04
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.03
PLN02463	447	lycopene beta cyclase	99.03
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.02
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.01
PRK10157	428	putative oxidoreductase FixC; Provisional	99.01
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.0
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.0
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.0
PRK07190	487	hypothetical protein; Provisional	99.0
PRK06184	502	hypothetical protein; Provisional	98.98
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.98
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.97
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.96
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.95
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.95
PRK07045	388	putative monooxygenase; Reviewed	98.95
PRK10015	429	oxidoreductase; Provisional	98.94
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.93
PRK08163	396	salicylate hydroxylase; Provisional	98.93
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.92
PRK07236	386	hypothetical protein; Provisional	98.92
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.92
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.91
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.9
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.9
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.88
PRK09126	392	hypothetical protein; Provisional	98.88
PLN02576	496	protoporphyrinogen oxidase	98.88
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.87
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.87
PRK08274	466	tricarballylate dehydrogenase; Validated	98.87
PRK08244	493	hypothetical protein; Provisional	98.86
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.85
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.85
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.85
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.84
PLN02697	529	lycopene epsilon cyclase	98.84
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.83
PRK08013	400	oxidoreductase; Provisional	98.83
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.83
PLN02487	569	zeta-carotene desaturase	98.83
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.83
PLN02268	435	probable polyamine oxidase	98.82
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.82
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.81
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.81
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.8
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.8
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.79
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.79
PRK05868	372	hypothetical protein; Validated	98.79
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.79
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.79
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.79
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.79
PRK07588	391	hypothetical protein; Provisional	98.76
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.76
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.75
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.75
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.74
PRK06185	407	hypothetical protein; Provisional	98.74
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.73
PRK06753	373	hypothetical protein; Provisional	98.73
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.73
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.73
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.72
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.72
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.72
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.72
PRK06126	545	hypothetical protein; Provisional	98.71
PRK11445	351	putative oxidoreductase; Provisional	98.71
COG3349	485	Uncharacterized conserved protein [Function unknow	98.7
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.7
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.69
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.68
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.67
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.67
PLN02676	487	polyamine oxidase	98.66
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.65
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.65
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.65
PRK07121	492	hypothetical protein; Validated	98.64
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.64
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.63
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.63
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.62
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.62
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.62
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.61
PRK06996	398	hypothetical protein; Provisional	98.61
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.61
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.61
PRK08401	466	L-aspartate oxidase; Provisional	98.6
PLN02661	357	Putative thiazole synthesis	98.6
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.6
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.59
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.59
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.58
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.58
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.58
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.58
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.57
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.56
PRK12839	572	hypothetical protein; Provisional	98.56
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.56
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.55
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.55
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.55
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.55
PRK06116	450	glutathione reductase; Validated	98.54
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.54
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.54
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.54
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.54
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.53
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.53
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.53
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.53
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.53
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.52
PRK06475	400	salicylate hydroxylase; Provisional	98.52
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.51
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.51
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.5
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.49
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.48
PRK07846	451	mycothione reductase; Reviewed	98.47
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.47
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.47
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.47
PRK06370	463	mercuric reductase; Validated	98.47
TIGR02053	463	MerA mercuric reductase. This model represents the	98.46
PLN02507	499	glutathione reductase	98.46
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.45
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.45
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.45
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.45
PRK08071	510	L-aspartate oxidase; Provisional	98.45
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.44
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.44
PRK08275	554	putative oxidoreductase; Provisional	98.44
PRK06175	433	L-aspartate oxidase; Provisional	98.44
PRK07538	413	hypothetical protein; Provisional	98.43
PRK06847	375	hypothetical protein; Provisional	98.42
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.42
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.42
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.41
PRK08294	634	phenol 2-monooxygenase; Provisional	98.41
PRK14694	468	putative mercuric reductase; Provisional	98.4
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.4
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.39
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.39
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.39
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.39
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.38
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.37
PRK07804	541	L-aspartate oxidase; Provisional	98.37
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.36
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.35
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.34
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.33
PTZ00052	499	thioredoxin reductase; Provisional	98.33
PTZ00058	561	glutathione reductase; Provisional	98.32
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.3
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.3
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.28
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.28
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.28
PRK07512	513	L-aspartate oxidase; Provisional	98.27
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.27
PRK13748	561	putative mercuric reductase; Provisional	98.27
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.26
KOG2852	380	consensus Possible oxidoreductase [General functio	98.26
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.26
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.25
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.25
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.24
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.24
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.23
PRK14727	479	putative mercuric reductase; Provisional	98.23
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.22
PLN02463	447	lycopene beta cyclase	98.21
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.2
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.2
PLN02546	558	glutathione reductase	98.19
PRK06834	488	hypothetical protein; Provisional	98.16
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.14
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.12
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.11
PRK10157	428	putative oxidoreductase FixC; Provisional	98.11
PRK08244	493	hypothetical protein; Provisional	98.09
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.09
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.09
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.08
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.07
KOG2853	509	consensus Possible oxidoreductase [General functio	98.07
PRK07236	386	hypothetical protein; Provisional	98.07
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.07
PRK10262	321	thioredoxin reductase; Provisional	98.07
PLN02568	539	polyamine oxidase	98.07
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.06
PLN02529	738	lysine-specific histone demethylase 1	98.05
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.05
PLN02985	514	squalene monooxygenase	98.02
PRK06184	502	hypothetical protein; Provisional	98.01
PRK07588	391	hypothetical protein; Provisional	98.01
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.0
PRK10015	429	oxidoreductase; Provisional	97.99
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.99
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.98
PLN02697	529	lycopene epsilon cyclase	97.97
PTZ00367	567	squalene epoxidase; Provisional	97.97
PRK07190	487	hypothetical protein; Provisional	97.97
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.96
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.96
PRK05868	372	hypothetical protein; Validated	97.96
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.96
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.95
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.95
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.95
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.95
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.95
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.95
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.94
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.93
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.93
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.9
PRK09126	392	hypothetical protein; Provisional	97.89
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.89
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.88
PRK09897	534	hypothetical protein; Provisional	97.87
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.87
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.86
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.86
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.86
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.86
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.85
PRK06753	373	hypothetical protein; Provisional	97.85
PRK12831	464	putative oxidoreductase; Provisional	97.85
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.85
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.84
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.84
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.84
PLN02852	491	ferredoxin-NADP+ reductase	97.83
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.82
PRK08013	400	oxidoreductase; Provisional	97.81
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.81
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.81
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.81
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.8
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.8
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.79
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.79
PRK06185	407	hypothetical protein; Provisional	97.78
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.77
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.77
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.75
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.74
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.73
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.7
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.7
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.69
PRK06475	400	salicylate hydroxylase; Provisional	97.68
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.67
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.67
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.67
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.67
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.66
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.66
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.65
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.64
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.64
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.62
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.62
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.59
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.59
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.59
PLN02661	357	Putative thiazole synthesis	97.58
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.57
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.56
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.55
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.55
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.54
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.54
PRK02106	560	choline dehydrogenase; Validated	97.54
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.52
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.51
PRK06996	398	hypothetical protein; Provisional	97.5
PRK06126	545	hypothetical protein; Provisional	97.5
PRK08401	466	L-aspartate oxidase; Provisional	97.49
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.48
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.47
PRK07395	553	L-aspartate oxidase; Provisional	97.43
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.43
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.42
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.41
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.41
PLN03000	881	amine oxidase	97.4
PRK07538	413	hypothetical protein; Provisional	97.4
PRK07804	541	L-aspartate oxidase; Provisional	97.37
PRK09077	536	L-aspartate oxidase; Provisional	97.37
PLN02815	594	L-aspartate oxidase	97.36
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.35
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.34
PRK06175	433	L-aspartate oxidase; Provisional	97.33
PRK13984	604	putative oxidoreductase; Provisional	97.32
PLN02785	587	Protein HOTHEAD	97.32
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.29
PRK11445	351	putative oxidoreductase; Provisional	97.28
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.28
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.27
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.24
COG3573	552	Predicted oxidoreductase [General function predict	97.24
PLN02976	1713	amine oxidase	97.22
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.2
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.19
PTZ00188	506	adrenodoxin reductase; Provisional	97.17
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.16
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.13
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.12
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.09
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.09
PLN02985	514	squalene monooxygenase	97.08
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.06
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.02
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.01
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.0
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.93
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	96.93
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.85
PRK07395	553	L-aspartate oxidase; Provisional	96.8
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	96.76
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.74
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.74
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	96.65
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	96.59
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.54
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	96.53
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	96.51
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	96.51
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.48
PLN02815	594	L-aspartate oxidase	96.47
PRK08294	634	phenol 2-monooxygenase; Provisional	96.47
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	96.46
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.44
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.43
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.25
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.23
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.2
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.19
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.18
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.12
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.1
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.09
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.09
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.07
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	96.06
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	96.0
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.98
PRK09077	536	L-aspartate oxidase; Provisional	95.97
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.85
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	95.85
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	95.84
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.72
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.63
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.58
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.57
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.55
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.54
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.52
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	95.47
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.34
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.31
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.29
PTZ00367	567	squalene epoxidase; Provisional	95.2

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=1.1e-31  Score=238.31  Aligned_cols=238  Identities=28%  Similarity=0.457  Sum_probs=196.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||||+||++||..|++++. +.+|+++++++...|.++.+...++........             ......+
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-------------~~~~~~~   67 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-------------QVLPANW   67 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-------------ccCCHHH
Confidence            35689999999999999999999985 778999999988888777665444322111110             1123466


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCe
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  209 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  209 (306)
                      +.+.+++++.++.|..++.+.+.+.+.++..+.||+||+|||+.++.+| .++...+++..++++.+...+.+.+..+++
T Consensus        68 ~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~  146 (396)
T PRK09754         68 WQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERS  146 (396)
T ss_pred             HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCe
Confidence            7788999999989999999988999988889999999999999987543 444445677777777787777777777899


Q ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC
Q 021871          210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  289 (306)
Q Consensus       210 v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~  289 (306)
                      ++|||+|.+|+|+|..|.+.+.+|+++.+.+.++++..++.+.+.+.+.++++||++++++.|++++.  ++.+ .+.+.
T Consensus       147 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~-~v~l~  223 (396)
T PRK09754        147 VVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEKV-ELTLQ  223 (396)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEE-EEEEC
Confidence            99999999999999999999999999999999887767888888899999999999999999999984  3333 57888


Q ss_pred             CCCEEecCEEEEecCC
Q 021871          290 DGSTIDADTVILLPYD  305 (306)
Q Consensus       290 ~G~~i~~d~vv~a~g~  305 (306)
                      +|+++++|.||+|+|.
T Consensus       224 ~g~~i~aD~Vv~a~G~  239 (396)
T PRK09754        224 SGETLQADVVIYGIGI  239 (396)
T ss_pred             CCCEEECCEEEECCCC
Confidence            9999999999999986

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=3.6e-30  Score=227.27  Aligned_cols=236  Identities=24%  Similarity=0.379  Sum_probs=188.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +++|||||||+||+++|..|++.+ ++.+|+|+++++...|.++.+...+  .......++.          .....+++
T Consensus         2 ~~~vvIiG~G~AG~~~a~~lr~~~-~~~~Itvi~~~~~~~y~~~~l~~~~--~~~~~~~~~~----------~~~~~~~~   68 (377)
T PRK04965          2 SNGIVIIGSGFAARQLVKNIRKQD-AHIPITLITADSGDEYNKPDLSHVF--SQGQRADDLT----------RQSAGEFA   68 (377)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEeCCCCCCcCcCcCcHHH--hCCCCHHHhh----------cCCHHHHH
Confidence            369999999999999999999886 4779999999988777766543311  1111111110          12345667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeE
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  210 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v  210 (306)
                      ++++++++.+++|.+++.+.+.+.+ ++..+.||+||+|||+.+.. |++++..  .+..++.+.+...+......++++
T Consensus        69 ~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~-p~i~G~~--~v~~~~~~~~~~~~~~~~~~~~~v  144 (377)
T PRK04965         69 EQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFV-PPIPGRE--LMLTLNSQQEYRAAETQLRDAQRV  144 (377)
T ss_pred             HhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCC-CCCCCCc--eEEEECCHHHHHHHHHHhhcCCeE
Confidence            8889999989899999998887776 45679999999999999874 5555532  255566667776666666678999


Q ss_pred             EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC
Q 021871          211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  290 (306)
Q Consensus       211 ~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~  290 (306)
                      +|||+|.+|+|+|..|.+.+.+|+++.+.+.++++..++.+...+.+.+++.||+++.+++|++++.. ++.+ .+.+.+
T Consensus       145 vViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~  222 (377)
T PRK04965        145 LVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSGI-RATLDS  222 (377)
T ss_pred             EEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCEE-EEEEcC
Confidence            99999999999999999999999999999998887668888899999999999999999999999853 3333 578889


Q ss_pred             CCEEecCEEEEecCC
Q 021871          291 GSTIDADTVILLPYD  305 (306)
Q Consensus       291 G~~i~~d~vv~a~g~  305 (306)
                      |+++++|.||+|+|.
T Consensus       223 g~~i~~D~vI~a~G~  237 (377)
T PRK04965        223 GRSIEVDAVIAAAGL  237 (377)
T ss_pred             CcEEECCEEEECcCC
Confidence            999999999999996

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=3.3e-30  Score=244.80  Aligned_cols=241  Identities=18%  Similarity=0.296  Sum_probs=201.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCC-CCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~-~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +++|||||+|++|+.+|..|++++. ++.+|+|+++++...|.+..+... +..  ....+           .......+
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~-~~~--~~~~~-----------l~~~~~~~   68 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSY-FSH--HTAEE-----------LSLVREGF   68 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHh-HcC--CCHHH-----------ccCCCHHH
Confidence            4589999999999999999987642 346999999999988876555431 111  11111           12345677


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCe
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  209 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  209 (306)
                      +++.+++++.+..|..++...+.+.+.+|..+.||+||+|||+.+.. |++++.+.++++.++.+.+...+......+++
T Consensus        69 ~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~-p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~  147 (847)
T PRK14989         69 YEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWI-PPIKGSETQDCFVYRTIEDLNAIEACARRSKR  147 (847)
T ss_pred             HHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCC-CCCCCCCCCCeEEECCHHHHHHHHHHHhcCCe
Confidence            88899999999899999998888888888889999999999999874 66777767778888888888888777777899


Q ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC
Q 021871          210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  289 (306)
Q Consensus       210 v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~  289 (306)
                      ++|||+|.+|+|+|..|.+.+.+|+++.+.+.+++..+++.....+.+.++++||++++++.+++|..++++....+.+.
T Consensus       148 vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~  227 (847)
T PRK14989        148 GAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFA  227 (847)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEEC
Confidence            99999999999999999999999999999999888668999999999999999999999999999985333445578889


Q ss_pred             CCCEEecCEEEEecCCC
Q 021871          290 DGSTIDADTVILLPYDQ  306 (306)
Q Consensus       290 ~G~~i~~d~vv~a~g~~  306 (306)
                      +|+.+++|.||+|+|..
T Consensus       228 dG~~i~~D~Vv~A~G~r  244 (847)
T PRK14989        228 DGSELEVDFIVFSTGIR  244 (847)
T ss_pred             CCCEEEcCEEEECCCcc
Confidence            99999999999999963

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.98  E-value=4.5e-30  Score=244.05  Aligned_cols=237  Identities=23%  Similarity=0.407  Sum_probs=200.1

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhhc
Q 021871           54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK  133 (306)
Q Consensus        54 vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (306)
                      |||||||+||+++|.+|++++..+.+|+|+++++...|.++.+.. ++.. .....+           .......++++.
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~-~l~g-~~~~~~-----------l~~~~~~~~~~~   67 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQG-EADLDD-----------ITLNSKDWYEKH   67 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccH-HHCC-CCCHHH-----------ccCCCHHHHHHC
Confidence            689999999999999999876445699999999998887665443 2211 111111           123456778889


Q ss_pred             CeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEE
Q 021871          134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV  213 (306)
Q Consensus       134 ~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~vi  213 (306)
                      +++++++++|..++...+.+.+.++..+.||+||+|||+.+.. |++|+.+.++++.++.+.+.+.+.+....+++++||
T Consensus        68 gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~-p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVV  146 (785)
T TIGR02374        68 GITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFI-LPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVI  146 (785)
T ss_pred             CCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCC-CCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEE
Confidence            9999999999999999999999999899999999999999874 667887778888888888888887777778999999


Q ss_pred             cCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCE
Q 021871          214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST  293 (306)
Q Consensus       214 G~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~  293 (306)
                      |+|.+|+|+|..|.+.+.+|+++.+.+.++++.+++.....+.+.+++.||++++++.++++..  ++.+..|.+.+|+.
T Consensus       147 GgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~  224 (785)
T TIGR02374       147 GGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSS  224 (785)
T ss_pred             CCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCE
Confidence            9999999999999999999999999999888767899999999999999999999999999983  44555788999999


Q ss_pred             EecCEEEEecCCC
Q 021871          294 IDADTVILLPYDQ  306 (306)
Q Consensus       294 i~~d~vv~a~g~~  306 (306)
                      +++|.||+|+|.+
T Consensus       225 i~~D~Vi~a~G~~  237 (785)
T TIGR02374       225 LEADLIVMAAGIR  237 (785)
T ss_pred             EEcCEEEECCCCC
Confidence            9999999999963

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.98  E-value=1.4e-30  Score=224.52  Aligned_cols=228  Identities=24%  Similarity=0.364  Sum_probs=180.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ++++|||||||++||.+|..|.+.. ++.+|++||+++.+.|.. .++.--.......             +....+...
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~p-lL~eva~g~l~~~-------------~i~~p~~~~   66 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFTP-LLYEVATGTLSES-------------EIAIPLRAL   66 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccch-hhhhhhcCCCChh-------------heeccHHHH
Confidence            4679999999999999999999986 356999999999987652 2111000010110             112345566


Q ss_pred             HhhcC-eEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCE----EEEccHHHHHHHHHhh
Q 021871          130 YKEKG-IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV----HYIRDVADADALISSL  204 (306)
Q Consensus       130 ~~~~~-v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~  204 (306)
                      +++.+ +.+... +|++||.+.++|.+.++..+.||+||+|+|+.+.++.      +||+    +.++.+.++.++++++
T Consensus        67 ~~~~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fg------i~G~~E~a~~lks~edA~~ir~~l  139 (405)
T COG1252          67 LRKSGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFG------IPGAAEYAFGLKTLEDALRLRRHL  139 (405)
T ss_pred             hcccCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCC------CCCHHHhCCCCCCHHHHHHHHHHH
Confidence            66555 888866 9999999999999999888999999999999988654      4553    3556677777766655


Q ss_pred             h--------cC-----CeEEEEcCCHHHHHHHHHHHhCC-------------CcEEEEecCCcccccccCHHHHHHHHHH
Q 021871          205 E--------KA-----KKVVVVGGGYIGMEVAAAAVGWK-------------LDTTIIFPENHLLQRLFTPSLAQRYEQL  258 (306)
Q Consensus       205 ~--------~~-----~~v~viG~g~~a~e~a~~l~~~~-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~  258 (306)
                      .        ..     ..++|+|+|.+|+|+|.+|.++.             .+|+++++++++++. +++.+.+..++.
T Consensus       140 ~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~  218 (405)
T COG1252         140 LEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERA  218 (405)
T ss_pred             HHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHH
Confidence            3        11     26999999999999999998652             289999999999997 899999999999


Q ss_pred             HHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCE-EecCEEEEecCCC
Q 021871          259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTVILLPYDQ  306 (306)
Q Consensus       259 ~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~-i~~d~vv~a~g~~  306 (306)
                      |+++||++++++.|++++++      +|++.+|+. |++|.+|||+|.+
T Consensus       219 L~~~GV~v~l~~~Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~  261 (405)
T COG1252         219 LEKLGVEVLLGTPVTEVTPD------GVTLKDGEEEIPADTVVWAAGVR  261 (405)
T ss_pred             HHHCCCEEEcCCceEEECCC------cEEEccCCeeEecCEEEEcCCCc
Confidence            99999999999999999964      688888885 9999999999974

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.97  E-value=7.9e-29  Score=223.61  Aligned_cols=237  Identities=24%  Similarity=0.361  Sum_probs=183.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhh
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (306)
                      +|+|||||++|+++|..|++++ ++.+|+|+|+++.+.|..+.++. +.........           .........+++
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~-~~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~   68 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLN-KELEITVYEKTDIVSFGACGLPY-FVGGFFDDPN-----------TMIARTPEEFIK   68 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHC-CCCcEEEEECCCcceeecCCCce-EeccccCCHH-----------HhhcCCHHHHHH
Confidence            7999999999999999999986 35699999999887665433221 1111000000           012344566778


Q ss_pred             cCeEEEeCCcEEEEeCCCCEEEcCC---CcEEe--cCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhh--
Q 021871          133 KGIEMIYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--  205 (306)
Q Consensus       133 ~~v~~~~~~~v~~v~~~~~~v~~~~---g~~~~--~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--  205 (306)
                      .+++++.+++|.+++.+.+.+.+.+   +..++  ||+||+|||+.+.. |++++.+.+++..+..+.+...+.+.+.  
T Consensus        69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~-~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~  147 (444)
T PRK09564         69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPII-PPIKNINLENVYTLKSMEDGLALKELLKDE  147 (444)
T ss_pred             CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCC-CCCCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence            8999988999999999888777653   55566  99999999999874 5667665677777776666666655443  


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~  285 (306)
                      .+++++|+|+|.+|+|+|..+.+.+.+|+++.+.+.+++..+++++.+.+.+.++++||+++++++|.+++.  ++.+..
T Consensus       148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~  225 (444)
T PRK09564        148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG  225 (444)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence            468999999999999999999999999999999998887557899999999999999999999999999973  444445


Q ss_pred             EEeCCCCEEecCEEEEecCCC
Q 021871          286 VKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       286 v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      +.+++ .++++|.+|+|+|..
T Consensus       226 v~~~~-~~i~~d~vi~a~G~~  245 (444)
T PRK09564        226 VVTDK-GEYEADVVIVATGVK  245 (444)
T ss_pred             EEeCC-CEEEcCEEEECcCCC
Confidence            66654 489999999999963

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.97  E-value=1.1e-28  Score=221.46  Aligned_cols=232  Identities=19%  Similarity=0.251  Sum_probs=178.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHh
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (306)
                      ++|||||||++|+++|.+|++++ ++.+|+|+|+++...|..+.++. +...........          .......+.+
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~-~~~~I~li~~~~~~~~~~~~lp~-~~~~~~~~~~~~----------~~~~~~~~~~   69 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLD-KESDIIIFEKDRDMSFANCALPY-YIGEVVEDRKYA----------LAYTPEKFYD   69 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhC-CCCCEEEEECCCCcccccCCcch-hhcCccCCHHHc----------ccCCHHHHHH
Confidence            48999999999999999999875 46799999999887776543332 110000000000          0011234446


Q ss_pred             hcCeEEEeCCcEEEEeCCCCEEEcCCC---c--EEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhh-
Q 021871          132 EKGIEMIYQDPVTSIDIEKQTLITNSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-  205 (306)
Q Consensus       132 ~~~v~~~~~~~v~~v~~~~~~v~~~~g---~--~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-  205 (306)
                      +.+++++.+++|.++|.+.+.+.+.++   .  .+.||+||+|||+.+.. |.++   .+++..++++.+...+.+.+. 
T Consensus        70 ~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~-~~~~---~~~~~~~~~~~~~~~l~~~l~~  145 (438)
T PRK13512         70 RKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGFE---SDITFTLRNLEDTDAIDQFIKA  145 (438)
T ss_pred             hCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC-CCCC---CCCeEEecCHHHHHHHHHHHhh
Confidence            679999988999999999988877543   2  46899999999999874 3322   355666666777766665443 


Q ss_pred             -cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEE
Q 021871          206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (306)
Q Consensus       206 -~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~  284 (306)
                       .+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+.+. +++++.+.+.+.++++||++++++.|++++.  +    
T Consensus       146 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~----  218 (438)
T PRK13512        146 NQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEIDAING--N----  218 (438)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--C----
Confidence             3689999999999999999999999999999999988765 7889999999999999999999999999973  2    


Q ss_pred             EEEeCCCCEEecCEEEEecCCC
Q 021871          285 AVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       285 ~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      .+.+++|+.+++|.||+|+|.+
T Consensus       219 ~v~~~~g~~~~~D~vl~a~G~~  240 (438)
T PRK13512        219 EVTFKSGKVEHYDMIIEGVGTH  240 (438)
T ss_pred             EEEECCCCEEEeCEEEECcCCC
Confidence            4667788899999999999963

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=99.97  E-value=9.9e-29  Score=211.57  Aligned_cols=238  Identities=45%  Similarity=0.734  Sum_probs=213.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      -+.++|||||++|..|+..+++.|. ..+++++.++..+.|.++.+.+               +..+..........+|+
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~---------------~~~~~~~~~a~r~~e~Y  137 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSK---------------FLLTVGEGLAKRTPEFY  137 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhccc---------------ceeeccccccccChhhH
Confidence            4689999999999999999999995 6788888888777776655444               33333344456777899


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeE
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  210 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v  210 (306)
                      ++.++++++++.|..+|...+++.+.+|+.+.|++++||||+.+.+ ++.||.+.+.+.+++++.+...+........+|
T Consensus       138 ke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~-l~~pG~~~~nv~~ireieda~~l~~~~~~~~~v  216 (478)
T KOG1336|consen  138 KEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKT-LDIPGVELKNVFYLREIEDANRLVAAIQLGGKV  216 (478)
T ss_pred             hhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCcccc-CCCCCccccceeeeccHHHHHHHHHHhccCceE
Confidence            9999999999999999999999999999999999999999998775 667888889999999999999888888888899


Q ss_pred             EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC
Q 021871          211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  290 (306)
Q Consensus       211 ~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~  290 (306)
                      +++|+|..++|+|..|...+.+||++.+.+..+++.+.+.+...+.+.++++||++++++.+.+++..++|++..|.+.+
T Consensus       217 V~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d  296 (478)
T KOG1336|consen  217 VCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD  296 (478)
T ss_pred             EEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988889999999999


Q ss_pred             CCEEecCEEEEecCC
Q 021871          291 GSTIDADTVILLPYD  305 (306)
Q Consensus       291 G~~i~~d~vv~a~g~  305 (306)
                      |..+++|.||+.+|-
T Consensus       297 g~~l~adlvv~GiG~  311 (478)
T KOG1336|consen  297 GKTLEADLVVVGIGI  311 (478)
T ss_pred             CCEeccCeEEEeecc
Confidence            999999999999885

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.96  E-value=1.6e-27  Score=213.08  Aligned_cols=230  Identities=19%  Similarity=0.242  Sum_probs=169.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      +.+++|||||||++|+.+|++|.+.+.   +|+|||+++.+.|. +.++. ....... ..      .     ....+..
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~---~ItlI~~~~~~~~~-~~l~~-~~~g~~~-~~------~-----~~~~~~~   70 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKY---NITVISPRNHMLFT-PLLPQ-TTTGTLE-FR------S-----ICEPVRP   70 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCC---eEEEEcCCCCcchh-hhHHH-hcccCCC-hH------H-----hHHHHHH
Confidence            456799999999999999999965444   89999999887653 22211 1111000 00      0     0112344


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEc----------CCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHH
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLIT----------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD  198 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~----------~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~  198 (306)
                      .++..++++.. .+|.+||.+.+.+.+          .++..+.||+||+|+|+.+.. +.+|+.. +....++.+.++.
T Consensus        71 ~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~-~~ipG~~-e~~~~~~~~~~a~  147 (424)
T PTZ00318         71 ALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT-FNIPGVE-ERAFFLKEVNHAR  147 (424)
T ss_pred             HhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCC-CCCCCHH-HcCCCCCCHHHHH
Confidence            45566788765 499999999888877          456689999999999999874 4444421 2233445565655


Q ss_pred             HHHHhhh-----------------cCCeEEEEcCCHHHHHHHHHHHhC--------------CCcEEEEecCCccccccc
Q 021871          199 ALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHLLQRLF  247 (306)
Q Consensus       199 ~~~~~~~-----------------~~~~v~viG~g~~a~e~a~~l~~~--------------~~~v~~~~~~~~~~~~~~  247 (306)
                      .+.+.+.                 ..++++|||+|.+|+|+|.+|.++              +.+|+++.+.+.+++. +
T Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~  226 (424)
T PTZ00318        148 GIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-F  226 (424)
T ss_pred             HHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-C
Confidence            5443321                 124899999999999999999863              5789999999998885 7


Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++.+.+.+.+.++++||++++++.|+++..  +    .|.+++|+++++|.+|||+|.
T Consensus       227 ~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~  278 (424)
T PTZ00318        227 DQALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGV  278 (424)
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCC
Confidence            889999999999999999999999999984  2    467889999999999999985

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.96  E-value=5.7e-27  Score=212.34  Aligned_cols=242  Identities=19%  Similarity=0.288  Sum_probs=168.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------CCCCCCCC---
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------LDKKPARL---  111 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~---  111 (306)
                      +.++||+|||||++|+++|++|+++|+   +|+++|+.+..+-..  .+.++...              .......+   
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~---~v~liE~~~~~GG~~--~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~   77 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGK---RVAVIERYRNVGGGC--THTGTIPSKALREAVLRLIGFNQNPLYSSYRVK   77 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCC---EEEEEeccccccccc--cccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence            456899999999999999999999998   999999965432110  00111100              00000000   


Q ss_pred             --CCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCccCCCCC
Q 021871          112 --PGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI  181 (306)
Q Consensus       112 --~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~~~~~~  181 (306)
                        ..+..+..      ......+...+++.+++++.+ ++..++.....+...++.  .++||+||+|||+.+.. |+.+
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~-p~~~  155 (461)
T PRK05249         78 LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYR-PPDV  155 (461)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CCCC
Confidence              00100000      000112334456678888866 555566554456555654  79999999999999875 3333


Q ss_pred             CCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH
Q 021871          182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  261 (306)
Q Consensus       182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (306)
                      +...+.+      .+++.+......+++++|+|+|.+|+|+|..++..+.+|+++.+.+.+++. +++++.+.+.+.+++
T Consensus       156 ~~~~~~v------~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~  228 (461)
T PRK05249        156 DFDHPRI------YDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSYHLRD  228 (461)
T ss_pred             CCCCCeE------EcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHHHHHH
Confidence            3222222      234444444456899999999999999999999999999999999999886 789999999999999


Q ss_pred             cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       262 ~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      +||+++.+++|++++.. ++.+ .+++.+|+.+++|.||+|+|.+
T Consensus       229 ~gI~v~~~~~v~~i~~~-~~~~-~v~~~~g~~i~~D~vi~a~G~~  271 (461)
T PRK05249        229 SGVTIRHNEEVEKVEGG-DDGV-IVHLKSGKKIKADCLLYANGRT  271 (461)
T ss_pred             cCCEEEECCEEEEEEEe-CCeE-EEEECCCCEEEeCEEEEeecCC
Confidence            99999999999999863 3333 4667788899999999999963

>PRK06116 glutathione reductase; Validated

Probab=99.95  E-value=6.2e-27  Score=211.32  Aligned_cols=234  Identities=21%  Similarity=0.364  Sum_probs=164.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC---------------------C--CCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP---------------------L--DKK  107 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~---------------------~--~~~  107 (306)
                      .+||+||||||+|++||..|+++|+   +|+|+|+...-+-   -.+.|++.+                     .  ...
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~---~V~liE~~~~GG~---c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~   77 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGA---KVALIEAKRLGGT---CVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN   77 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccchhhh---hhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC
Confidence            5899999999999999999999998   9999998632110   011111100                     0  000


Q ss_pred             CCCCCCcccccC---CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC
Q 021871          108 PARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY  184 (306)
Q Consensus       108 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~  184 (306)
                      ..++..+.....   ......+...+.+.+++++.+ ++..++  .+++.+ ++..+.||+||+|||+.+.. |+     
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~~-p~-----  147 (450)
T PRK06116         78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPSI-PD-----  147 (450)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCCC-CC-----
Confidence            011110000000   000111223355678998876 555554  356666 66789999999999999874 44     


Q ss_pred             CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCC
Q 021871          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  264 (306)
Q Consensus       185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  264 (306)
                      +++...+   .+++.++.....+++++|||+|.+|+|+|..+.+.+.+|+++.+++.+++. +++++.+.+.+.++++||
T Consensus       148 i~g~~~~---~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~~~GV  223 (450)
T PRK06116        148 IPGAEYG---ITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEMEKKGI  223 (450)
T ss_pred             CCCccee---EchhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHHHCCc
Confidence            3443322   123333333345789999999999999999999999999999999888775 788999999999999999


Q ss_pred             EEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          265 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       265 ~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +++++++|.+++.++++.+ .+.+.+|+++++|.||+|+|.
T Consensus       224 ~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~  263 (450)
T PRK06116        224 RLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGR  263 (450)
T ss_pred             EEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCC
Confidence            9999999999986445534 577888889999999999986

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.95  E-value=3.8e-27  Score=212.19  Aligned_cols=238  Identities=19%  Similarity=0.281  Sum_probs=164.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC-----CCCCCCCCCCcccccC-----
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP-----LDKKPARLPGFHTCVG-----  119 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----  119 (306)
                      +.+||+|||||++|+++|.+|+++|+   +|+|+|+.+..... .....|++..     ......   .|.....     
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~---~V~lie~~~~~~GG-~~~~~gcip~k~l~~~~~~~~---~~~~~~~~~~~~   74 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGW---RVALIEQSNAMYGG-TCINIGCIPTKTLVHDAQQHT---DFVRAIQRKNEV   74 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCC---eEEEEcCCCCccce-eEeeccccchHHHHHHhccCC---CHHHHHHHHHHH
Confidence            46899999999999999999999998   99999987532110 1111222110     000001   1110000     


Q ss_pred             -CCCCcCChhHHh-hcCeEEEeCCcEEEEeCCCCEEEcCCCc-EEecCcEEEeeCCCCccCCCCCCCC-CCCEEEEccHH
Q 021871          120 -SGGERQTPEWYK-EKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVA  195 (306)
Q Consensus       120 -~~~~~~~~~~~~-~~~v~~~~~~~v~~v~~~~~~v~~~~g~-~~~~~~lila~G~~~~~~~~~~~~~-~~g~~~~~~~~  195 (306)
                       ..........+. ..+++++.+ ++..++.....+...++. .+.||+||+|||+.+.. |++++.. .+++.      
T Consensus        75 ~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~-p~i~G~~~~~~v~------  146 (441)
T PRK08010         75 VNFLRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVV-PPIPGITTTPGVY------  146 (441)
T ss_pred             HHHHHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCC-CCCCCccCCCCEE------
Confidence             000000111222 237888765 666677655566666664 69999999999999874 5555531 23332      


Q ss_pred             HHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       196 ~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      ++..+......+++++|+|+|.+|+|+|..+.+.+.+|+++.+.+.+++. .++.+.+.+.+.++++||++++++.|+++
T Consensus       147 ~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~~i  225 (441)
T PRK08010        147 DSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVERI  225 (441)
T ss_pred             ChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence            23333333345789999999999999999999999999999999988886 58888999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          276 EAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      +.+ ++.+ .+.+++| .+++|.||+|+|..
T Consensus       226 ~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~~  253 (441)
T PRK08010        226 SHH-ENQV-QVHSEHA-QLAVDALLIASGRQ  253 (441)
T ss_pred             EEc-CCEE-EEEEcCC-eEEeCEEEEeecCC
Confidence            863 4443 4666655 69999999999863

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.95  E-value=4.4e-27  Score=211.60  Aligned_cols=236  Identities=21%  Similarity=0.351  Sum_probs=162.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------------CCCC---
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------------LDKK---  107 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------------~~~~---  107 (306)
                      .+||+||||||+|++||.+|+++|+   +|+|+|++..-+   .-.+.||+..                    ....   
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~GG---~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   75 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGA---KALLVEAKKLGG---TCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLEN   75 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC---cEEEeccccccc---ceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcC
Confidence            5899999999999999999999998   999999864311   1111112110                    0000   


Q ss_pred             CCCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC
Q 021871          108 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY  184 (306)
Q Consensus       108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~  184 (306)
                      ..+++......   -......+...+++.+++++.++.+.   .+..++.+ ++..+.||++|+|||+.+..++.+    
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i----  147 (450)
T TIGR01421        76 TFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPENI----  147 (450)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCC----
Confidence            01111000000   00001123334556789988775432   23445655 455799999999999998753243    


Q ss_pred             CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCC
Q 021871          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  264 (306)
Q Consensus       185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  264 (306)
                       |+....   .+++.++.....+++++|||+|.+|+|+|..++..+.+|+++.+.+++++. +++.+.+.+.+.++++||
T Consensus       148 -~g~~~~---~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~gI  222 (450)
T TIGR01421       148 -PGAELG---TDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEKEGI  222 (450)
T ss_pred             -CCCcee---EcHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHHcCC
Confidence             333221   133344433345789999999999999999999999999999999998876 799999999999999999


Q ss_pred             EEEcCceEEEEEeCCCCcEEEEEeCCC-CEEecCEEEEecCCC
Q 021871          265 KFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTVILLPYDQ  306 (306)
Q Consensus       265 ~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~i~~d~vv~a~g~~  306 (306)
                      ++++++.|++++..+++.+ .+.+.+| +.+++|.||+|+|..
T Consensus       223 ~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~i~~D~vi~a~G~~  264 (450)
T TIGR01421       223 NVHKLSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRK  264 (450)
T ss_pred             EEEcCCEEEEEEEeCCceE-EEEECCCcEEEEcCEEEEeeCCC
Confidence            9999999999986434433 5777777 579999999999964

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.95  E-value=3.6e-27  Score=212.17  Aligned_cols=239  Identities=16%  Similarity=0.233  Sum_probs=160.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcccccccc-----CCCCCCCCCCCccccc---CCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF-----PLDKKPARLPGFHTCV---GSG  121 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~  121 (306)
                      +.+||+|||||+||++||.+|+++|+   +|+|+|+++.. +...-.+.|++.     .......++.......   ...
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~---~V~liE~~~~~-~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~   77 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGK---KVALVEESKAM-YGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSR   77 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCC---EEEEEecCCcc-cceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999998   99999998632 110011112211     0000001111000000   000


Q ss_pred             CCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCC---CcEEecCcEEEeeCCCCccCCCCCCC-CCCCEEEEccHHHH
Q 021871          122 GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADA  197 (306)
Q Consensus       122 ~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~---g~~~~~~~lila~G~~~~~~~~~~~~-~~~g~~~~~~~~~~  197 (306)
                      ........+.+.+++++.+. ...+  +.+++.+.+   ...+.||+||+|||+.+.. |++|+. ..+++.      ++
T Consensus        78 ~~~~~~~~~~~~gV~~~~g~-~~~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~~-p~i~G~~~~~~v~------~~  147 (438)
T PRK07251         78 LRGKNYAMLAGSGVDLYDAE-AHFV--SNKVIEVQAGDEKIELTAETIVINTGAVSNV-LPIPGLADSKHVY------DS  147 (438)
T ss_pred             HHHHHHHHHHhCCCEEEEEE-EEEc--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCC-CCCCCcCCCCcEE------ch
Confidence            01112234566788877653 3222  345554432   2479999999999999874 455542 122222      33


Q ss_pred             HHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       198 ~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      ..+.+....+++++|||+|.+|+|+|..+++.+.+|+++.+.+.+++. .++.+.+.+.+.++++||+++++++|++++.
T Consensus       148 ~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~  226 (438)
T PRK07251        148 TGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKN  226 (438)
T ss_pred             HHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEe
Confidence            344443446889999999999999999999999999999999998876 5788888899999999999999999999986


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                       +++.+ .+. .+|+++++|.+|+|+|..
T Consensus       227 -~~~~v-~v~-~~g~~i~~D~viva~G~~  252 (438)
T PRK07251        227 -DGDQV-LVV-TEDETYRFDALLYATGRK  252 (438)
T ss_pred             -cCCEE-EEE-ECCeEEEcCEEEEeeCCC
Confidence             34443 243 356789999999999863

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.95  E-value=1.2e-26  Score=208.93  Aligned_cols=236  Identities=18%  Similarity=0.309  Sum_probs=164.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------------C--CCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------------L--DKKP  108 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------------~--~~~~  108 (306)
                      .|||+||||||+|++||.+++++|+   +|+|+|+...-+   .-.+.||+..                    .  ....
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~~GG---~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   75 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGA---KVAIAEEPRVGG---TCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKAR   75 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCccCc---eeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCC
Confidence            4899999999999999999999998   999999853211   1111112110                    0  0000


Q ss_pred             CCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCC
Q 021871          109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL  185 (306)
Q Consensus       109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~  185 (306)
                      .++.......   -......+...+++.++++..+ ++..++.+...+. .++..+.||+||+|||+.+.. |++     
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~-p~i-----  147 (446)
T TIGR01424        76 FDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQK-PNL-----  147 (446)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCC-CCC-----
Confidence            0000000000   0011123344466678998866 7777776533333 456689999999999999874 443     


Q ss_pred             CCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCE
Q 021871          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  265 (306)
Q Consensus       186 ~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  265 (306)
                      +|.....   +++........+++++|||+|.+|+|+|..+...+.+|+++.+.+.+++. +++++.+.+.+.++++||+
T Consensus       148 ~G~~~~~---~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~  223 (446)
T TIGR01424       148 PGHELGI---TSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGIR  223 (446)
T ss_pred             CCcccee---chHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCE
Confidence            3432211   22222222235789999999999999999999999999999999988876 6888999999999999999


Q ss_pred             EEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          266 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       266 i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      ++.++.|++++..+++ + .+.+.+|+.+++|.+|+|+|..
T Consensus       224 i~~~~~v~~i~~~~~~-~-~v~~~~g~~i~~D~viva~G~~  262 (446)
T TIGR01424       224 IHPQTSLTSITKTDDG-L-KVTLSHGEEIVADVVLFATGRS  262 (446)
T ss_pred             EEeCCEEEEEEEcCCe-E-EEEEcCCcEeecCEEEEeeCCC
Confidence            9999999999864344 3 4677788889999999999863

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.95  E-value=2.8e-26  Score=201.90  Aligned_cols=229  Identities=21%  Similarity=0.327  Sum_probs=168.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhh
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (306)
                      +|||||||+||+.+|.+|+++..++.+|+|+|+++.+.|... ++ .+..... ...           +....+..++++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~-~~~~g~~-~~~-----------~~~~~~~~~~~~   66 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LP-GMIAGHY-SLD-----------EIRIDLRRLARQ   66 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hh-HHHheeC-CHH-----------HhcccHHHHHHh
Confidence            589999999999999999765334669999999988665531 11 1111100 000           112345566777


Q ss_pred             cCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHH----HHHhh---h
Q 021871          133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---E  205 (306)
Q Consensus       133 ~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~---~  205 (306)
                      .+++++.+ +|..++.+++.+.+++++.+.||+||+|||+.+.. |.+|+. .+....++.+.+...    +....   .
T Consensus        67 ~gv~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~-~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (364)
T TIGR03169        67 AGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPL-SGVEGA-ADLAVPVKPIENFLARWEALLESADAPP  143 (364)
T ss_pred             cCCEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCCC-CCCCcc-cccccccCCHHHHHHHHHHHHHHHhcCC
Confidence            89998865 89999999999999999889999999999999874 555542 333444444444433    22222   1


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhC----C--CcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGW----K--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  279 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~----~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  279 (306)
                      .+++++|+|+|..++|+|..|.+.    +  .+|+++ +.+.+++. +++.+...+.+.+++.||++++++.|++++.  
T Consensus       144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--  219 (364)
T TIGR03169       144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--  219 (364)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--
Confidence            357899999999999999999753    3  478888 56666654 6788888999999999999999999999873  


Q ss_pred             CCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          280 DGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       280 ~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      +    .+.+.+|+++++|.+|+|+|..
T Consensus       220 ~----~v~~~~g~~i~~D~vi~a~G~~  242 (364)
T TIGR03169       220 G----ALILADGRTLPADAILWATGAR  242 (364)
T ss_pred             C----eEEeCCCCEEecCEEEEccCCC
Confidence            2    4677888899999999999963

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.95  E-value=1.3e-26  Score=204.82  Aligned_cols=240  Identities=24%  Similarity=0.368  Sum_probs=169.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC-----------C------------C
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP-----------L------------D  105 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~-----------~------------~  105 (306)
                      +..||++|||||++|..+|.++++.|.   +|.++|+....+  ..-++.||+.+           .            .
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~---kvalvE~~~~lG--GtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~   76 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGL---KVALVEKGERLG--GTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAE   76 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCC---CEEEEeecCCcC--ceEEeeCccccHHHHHHHHHHHHHhhcccccceecC
Confidence            456999999999999999999999998   599999995221  11111222210           0            0


Q ss_pred             CCCCCCCCcccc---cCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCC--CcEEecCcEEEeeCCCCccCCCC
Q 021871          106 KKPARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS--GKLLKYGSLIVATGCTASRFPEK  180 (306)
Q Consensus       106 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~--g~~~~~~~lila~G~~~~~~~~~  180 (306)
                      ....++......   ............+++.+++++.+. ..-+  +..++.+.+  .+.++++++|+|||+.|..+| .
T Consensus        77 ~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~-a~f~--~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~-~  152 (454)
T COG1249          77 VPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGE-ARFV--DPHTVEVTGEDKETITADNIIIATGSRPRIPP-G  152 (454)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE-EEEC--CCCEEEEcCCCceEEEeCEEEEcCCCCCcCCC-C
Confidence            000111111000   011122233344555688887663 2212  245666655  468999999999999998544 4


Q ss_pred             CCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH
Q 021871          181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  260 (306)
Q Consensus       181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (306)
                      ++  +++..++    +.+........|++++|||+|++|+|+|..++..|.+||++.+.+++++. +++++.+.+.+.|+
T Consensus       153 ~~--~~~~~~~----~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~l~  225 (454)
T COG1249         153 PG--IDGARIL----DSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLE  225 (454)
T ss_pred             CC--CCCCeEE----echhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHHHH
Confidence            44  3333322    33332223367999999999999999999999999999999999999996 89999999999999


Q ss_pred             HcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC--EEecCEEEEecCCC
Q 021871          261 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTVILLPYDQ  306 (306)
Q Consensus       261 ~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~--~i~~d~vv~a~g~~  306 (306)
                      +.|++++++++++.++.++++ + .+.+++|+  ++++|.+++|+|.+
T Consensus       226 ~~gv~i~~~~~v~~~~~~~~~-v-~v~~~~g~~~~~~ad~vLvAiGR~  271 (454)
T COG1249         226 KGGVKILLNTKVTAVEKKDDG-V-LVTLEDGEGGTIEADAVLVAIGRK  271 (454)
T ss_pred             hCCeEEEccceEEEEEecCCe-E-EEEEecCCCCEEEeeEEEEccCCc
Confidence            999999999999999975444 3 68888876  79999999999974

>PRK06370 mercuric reductase; Validated

Probab=99.95  E-value=1.2e-26  Score=210.19  Aligned_cols=241  Identities=17%  Similarity=0.286  Sum_probs=163.3

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------------CC--
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------------LD--  105 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------------~~--  105 (306)
                      ++.++||+||||||+|++||.+|+++|+   +|+|+|+...-+-   -.+.|++.+                    ..  
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG~---c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~   75 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGM---KVALIERGLLGGT---CVNTGCVPTKTLIASARAAHLARRAAEYGVSVG   75 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCccCCc---eeccccCcHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            3557999999999999999999999998   9999998643211   011122110                    00  


Q ss_pred             -CCCCCCCCccccc---CCCCCcCChhHHhhc-CeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCC
Q 021871          106 -KKPARLPGFHTCV---GSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK  180 (306)
Q Consensus       106 -~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~  180 (306)
                       ....++.......   .......+..++++. +++++.++.+   ..+.+++.+ ++..+.||+||+|||+.+.. |++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~---~~~~~~v~v-~~~~~~~d~lViATGs~p~~-p~i  150 (463)
T PRK06370         76 GPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR---FESPNTVRV-GGETLRAKRIFINTGARAAI-PPI  150 (463)
T ss_pred             ccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE---EccCCEEEE-CcEEEEeCEEEEcCCCCCCC-CCC
Confidence             0011111000000   000112334455665 8998877543   233456665 34579999999999999874 555


Q ss_pred             CCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH
Q 021871          181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  260 (306)
Q Consensus       181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (306)
                      ++.+...+.      +...+.+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. .++++.+.+.+.++
T Consensus       151 ~G~~~~~~~------~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~  223 (463)
T PRK06370        151 PGLDEVGYL------TNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILE  223 (463)
T ss_pred             CCCCcCceE------cchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHH
Confidence            553322222      22223322345789999999999999999999999999999999998886 68888999999999


Q ss_pred             HcCCEEEcCceEEEEEeCCCCcEEEEEeCC-CCEEecCEEEEecCCC
Q 021871          261 QNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTVILLPYDQ  306 (306)
Q Consensus       261 ~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~-G~~i~~d~vv~a~g~~  306 (306)
                      ++||++++++.|.+++..+++..+.+...+ +..+++|.||+|+|..
T Consensus       224 ~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~  270 (463)
T PRK06370        224 REGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV  270 (463)
T ss_pred             hCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence            999999999999999864334322333333 4579999999999963

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.95  E-value=3.5e-26  Score=207.45  Aligned_cols=242  Identities=23%  Similarity=0.338  Sum_probs=163.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------------C--CCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------------L--DKK  107 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------------~--~~~  107 (306)
                      ..+||+|||||++|+++|.+|+++|+   +|+|+|+...-+   .-.+.||+..                    .  ...
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG---~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~   76 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGL---KTALVEKGKLGG---TCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGP   76 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCc---ceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCC
Confidence            46899999999999999999999998   999999863211   0011111100                    0  000


Q ss_pred             CCCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCC-------CCEEEcCCC--cEEecCcEEEeeCCCCc
Q 021871          108 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTAS  175 (306)
Q Consensus       108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~-------~~~v~~~~g--~~~~~~~lila~G~~~~  175 (306)
                      ..+++......   -..........+++.+++++.+ .+..++.+       ...+.+.+|  ..+.||+||+|||+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~  155 (472)
T PRK05976         77 ALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV  155 (472)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence            00110000000   0000111223455678998877 66677766       445666666  47999999999999986


Q ss_pred             cCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHH
Q 021871          176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY  255 (306)
Q Consensus       176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  255 (306)
                      .+|..+   ..+...+    +++...+....+++++|||+|.+|+|+|..+++.+.+|+++.+.+.+++. .++.+.+.+
T Consensus       156 ~~p~~~---~~~~~~~----~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l  227 (472)
T PRK05976        156 ELPGLP---FDGEYVI----SSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEV  227 (472)
T ss_pred             CCCCCC---CCCceEE----cchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHH
Confidence            443221   2332222    22233222234789999999999999999999999999999999998886 688899999


Q ss_pred             HHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC--EEecCEEEEecCCC
Q 021871          256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTVILLPYDQ  306 (306)
Q Consensus       256 ~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~--~i~~d~vv~a~g~~  306 (306)
                      .+.++++||++++++.|++++..+++.+..+.+.+|+  ++++|.+|+|+|..
T Consensus       228 ~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~  280 (472)
T PRK05976        228 ARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR  280 (472)
T ss_pred             HHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence            9999999999999999999984113334345556664  69999999999963

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.95  E-value=3.6e-26  Score=207.09  Aligned_cols=243  Identities=24%  Similarity=0.343  Sum_probs=162.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-C-CCCccccccc---------------cCCC--CCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-Y-ERPALTKGYL---------------FPLD--KKPAR  110 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~-~~~~~~~~~~---------------~~~~--~~~~~  110 (306)
                      ..+||+|||||++|++||..|+++|+   +|+|+|+...-+ + ....++...+               +.+.  ....+
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGL---KVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID   79 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC---cEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence            35899999999999999999999998   999999876211 1 1100110000               0000  00001


Q ss_pred             CCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcC-CCcEEecCcEEEeeCCCCccCCCCCCCCCC
Q 021871          111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLP  186 (306)
Q Consensus       111 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~-~g~~~~~~~lila~G~~~~~~~~~~~~~~~  186 (306)
                      +..+....   .......+...+++.+++++.+ ++..++.....+... ++..+.||+||+|||+.+..+|   +...+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~p---g~~~~  155 (462)
T PRK06416         80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELP---GIEID  155 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCC---CCCCC
Confidence            00000000   0000112334456678998876 555566544455432 3367999999999999986433   32223


Q ss_pred             CEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEE
Q 021871          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (306)
Q Consensus       187 g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  266 (306)
                      +...+    +++...+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.++++||++
T Consensus       156 ~~~v~----~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i  230 (462)
T PRK06416        156 GRVIW----TSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKI  230 (462)
T ss_pred             CCeEE----cchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEE
Confidence            32222    22222222235789999999999999999999999999999999998886 78899999999999999999


Q ss_pred             EcCceEEEEEeCCCCcEEEEEeCCC---CEEecCEEEEecCCC
Q 021871          267 VKGASIKNLEAGSDGRVAAVKLEDG---STIDADTVILLPYDQ  306 (306)
Q Consensus       267 ~~~~~v~~i~~~~~~~v~~v~~~~G---~~i~~d~vv~a~g~~  306 (306)
                      +++++|++++.+ ++.+ .+.+.+|   +++++|.||+|+|..
T Consensus       231 ~~~~~V~~i~~~-~~~v-~v~~~~gg~~~~i~~D~vi~a~G~~  271 (462)
T PRK06416        231 KTGAKAKKVEQT-DDGV-TVTLEDGGKEETLEADYVLVAVGRR  271 (462)
T ss_pred             EeCCEEEEEEEe-CCEE-EEEEEeCCeeEEEEeCEEEEeeCCc
Confidence            999999999863 3333 4666555   679999999999863

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.7e-26  Score=194.84  Aligned_cols=223  Identities=24%  Similarity=0.332  Sum_probs=169.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCc-EEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCCh
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP  127 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~-V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  127 (306)
                      +.+||+||||||+||+||.++.+.++   + ++|+|+...-         |++.... ...++|++.. ..+..+...+.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l---~~~li~~~~~~g---------g~~~~~~-~venypg~~~~~~g~~L~~~~~   68 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGL---KVVLILEGGEPG---------GQLTKTT-DVENYPGFPGGILGPELMEQMK   68 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCC---CcEEEEecCCcC---------Cccccce-eecCCCCCccCCchHHHHHHHH
Confidence            56899999999999999999999998   6 7777765442         2222222 4566777776 56666667777


Q ss_pred             hHHhhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCccCCCCCC---CCCCCEEEEccHHHHHHHHH
Q 021871          128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRDVADADALIS  202 (306)
Q Consensus       128 ~~~~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~  202 (306)
                      ++...+++++.. ..|..++...  +.+.++++. +++++||+|||..+++ |.+|+   ....++.++..   |+.   
T Consensus        69 ~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~-~~~~~e~e~~g~gv~yc~~---cdg---  139 (305)
T COG0492          69 EQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK-LGVPGEEEFEGKGVSYCAT---CDG---  139 (305)
T ss_pred             HHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC-CCCCcchhhcCCceEEeee---cCc---
Confidence            888888988876 5888888764  577777776 9999999999999875 33332   12346676642   333   


Q ss_pred             hhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCC
Q 021871          203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDG  281 (306)
Q Consensus       203 ~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~  281 (306)
                       +..+++|+|+|+|++|+|.|.+|.+++++|+++.|.+.+.+   .    +.+.++++++ +|++++++.|+++..  ++
T Consensus       140 -~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~----~~~~~~l~~~~~i~~~~~~~i~ei~G--~~  209 (305)
T COG0492         140 -FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---E----EILVERLKKNVKIEVLTNTVVKEILG--DD  209 (305)
T ss_pred             -cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---C----HHHHHHHHhcCCeEEEeCCceeEEec--Cc
Confidence             34578999999999999999999999999999999988766   2    3455556655 899999999999994  43


Q ss_pred             cEEEEEeCC--CC--EEecCEEEEecCC
Q 021871          282 RVAAVKLED--GS--TIDADTVILLPYD  305 (306)
Q Consensus       282 ~v~~v~~~~--G~--~i~~d~vv~a~g~  305 (306)
                       +.+|.+.+  |+  .+.+|.+++++|.
T Consensus       210 -v~~v~l~~~~~~~~~~~~~gvf~~iG~  236 (305)
T COG0492         210 -VEGVVLKNVKGEEKELPVDGVFIAIGH  236 (305)
T ss_pred             -cceEEEEecCCceEEEEeceEEEecCC
Confidence             55677766  32  6899999999985

>PRK10262 thioredoxin reductase; Provisional

Probab=99.95  E-value=3.5e-26  Score=197.78  Aligned_cols=234  Identities=16%  Similarity=0.186  Sum_probs=158.6

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQT  126 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  126 (306)
                      +.+.+||+|||||||||+||..|+++|+   +++++|....-+..        ...  ....++|+... ........++
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~---~~~~ie~~~~gg~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~   69 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQL--------TTT--TEVENWPGDPNDLTGPLLMERM   69 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCC---CeEEEEeecCCCce--------ecC--ceECCCCCCCCCCCHHHHHHHH
Confidence            3567899999999999999999999998   89999854321110        000  00111122110 0001112344


Q ss_pred             hhHHhhcCeEEEeCCcEEEEeCCCCEEEcC-CCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHH
Q 021871          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS  202 (306)
Q Consensus       127 ~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~-~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~  202 (306)
                      ......++..+..+ ++..++.....+.+. +...+.||+||+|+|+.++. |++|+.+   .+++.++.      .+..
T Consensus        70 ~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~-~~i~g~~~~~~~~v~~~~------~~~~  141 (321)
T PRK10262         70 HEHATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARY-LGLPSEEAFKGRGVSACA------TCDG  141 (321)
T ss_pred             HHHHHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCC-CCCCCHHHcCCCcEEEee------cCCH
Confidence            55555667776654 677777665543332 22368999999999999874 5555522   22333332      1112


Q ss_pred             hhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCc
Q 021871          203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  282 (306)
Q Consensus       203 ~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~  282 (306)
                      ....+++++|+|+|.+|+|+|..|++.+.+|+++.+.+.+.   .++.+.+.+.+.+++.||++++++.|++++. +++.
T Consensus       142 ~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~-~~~~  217 (321)
T PRK10262        142 FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTG-DQMG  217 (321)
T ss_pred             HHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEc-CCcc
Confidence            23468999999999999999999999999999999987653   2566778888889999999999999999985 3434


Q ss_pred             EEEEEeCCC------CEEecCEEEEecCCC
Q 021871          283 VAAVKLEDG------STIDADTVILLPYDQ  306 (306)
Q Consensus       283 v~~v~~~~G------~~i~~d~vv~a~g~~  306 (306)
                      +.+|++.++      +++++|.||+|+|..
T Consensus       218 ~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~  247 (321)
T PRK10262        218 VTGVRLRDTQNSDNIESLDVAGLFVAIGHS  247 (321)
T ss_pred             EEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence            445655432      369999999999963

>PLN02507 glutathione reductase

Probab=99.95  E-value=2.3e-25  Score=202.37  Aligned_cols=239  Identities=18%  Similarity=0.265  Sum_probs=166.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC---------CCCCCCCCccccccccC--------------C-C
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPYERPALTKGYLFP--------------L-D  105 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~---------~~~~~~~~~~~~~~~~~--------------~-~  105 (306)
                      ..|||+|||||++|+++|.+++++|.   +|+++|+.         ...+  ..-+..||+..              . .
T Consensus        24 ~~yDvvVIG~GpaG~~aA~~a~~~G~---~V~liE~~~~~~~~~~~~~~G--Gtc~n~GciPsK~l~~~a~~~~~~~~~~   98 (499)
T PLN02507         24 YDFDLFVIGAGSGGVRAARFSANFGA---KVGICELPFHPISSESIGGVG--GTCVIRGCVPKKILVYGATFGGEFEDAK   98 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcccccccCCCcc--ceeeccCchhHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999998   99999962         1111  11111122100              0 0


Q ss_pred             CCCCCCC-----CcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCC
Q 021871          106 KKPARLP-----GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGC  172 (306)
Q Consensus       106 ~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~  172 (306)
                      ....+.+     .+..+..      ......+...+++.+++++.+ ++..++.+...+.+.+|+  .+.||+||+|||+
T Consensus        99 ~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs  177 (499)
T PLN02507         99 NYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGS  177 (499)
T ss_pred             hcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCC
Confidence            0000000     0000000      000011223345578888866 677778777777777775  5899999999999


Q ss_pred             CCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHH
Q 021871          173 TASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA  252 (306)
Q Consensus       173 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~  252 (306)
                      .+.. |++     ++.....   +.+...+....+++++|||+|.+|+|+|..+...+.+|+++.+.+.+++. +++++.
T Consensus       178 ~p~~-p~i-----pG~~~~~---~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~  247 (499)
T PLN02507        178 RAQR-PNI-----PGKELAI---TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMR  247 (499)
T ss_pred             CCCC-CCC-----CCcccee---chHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHH
Confidence            9874 443     3332211   22223332335789999999999999999999999999999999988775 789999


Q ss_pred             HHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       253 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      +.+.+.++++||++++++.|++++.. ++.+ .+.+.+|+++++|.||+|+|.+
T Consensus       248 ~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~  299 (499)
T PLN02507        248 AVVARNLEGRGINLHPRTNLTQLTKT-EGGI-KVITDHGEEFVADVVLFATGRA  299 (499)
T ss_pred             HHHHHHHHhCCCEEEeCCEEEEEEEe-CCeE-EEEECCCcEEEcCEEEEeecCC
Confidence            99999999999999999999999863 3333 4777888899999999999863

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.94  E-value=6.2e-26  Score=194.58  Aligned_cols=225  Identities=23%  Similarity=0.317  Sum_probs=156.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCChhHH
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY  130 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  130 (306)
                      +||+|||||++||++|..|++.|+   +|+|+|+.+..+         .+... ....++|++.. ..+.+...++.+.+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg---------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~   67 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANL---KTLIIEGMEPGG---------QLTTT-TEVENYPGFPEGISGPELMEKMKEQA   67 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCc---------ceeec-ccccccCCCCCCCChHHHHHHHHHHH
Confidence            589999999999999999999998   999999875211         11000 00111222221 11112234666777


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHHhhh
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLE  205 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~  205 (306)
                      ++.++++++ .+|.+++....  .+.+.++..++||++|+|+|..+.. |.+|+..   ..++.+....      .....
T Consensus        68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~-~~i~g~~~~~~~~~~~~~~~------~~~~~  139 (300)
T TIGR01292        68 VKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARK-LGIPGEDEFLGRGVSYCATC------DGPFF  139 (300)
T ss_pred             HHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCccc-CCCCChhhcCCccEEEeeec------Chhhc
Confidence            888999887 78999987654  5666677789999999999998764 4445422   1222222111      11233


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVA  284 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~  284 (306)
                      .+++++|+|+|.+|+|+|..+.+.+.+|+++.+.+.+..   .    ..+.+.++++ ||+++.++.+++++.  ++.+.
T Consensus       140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~~~~v~~i~~--~~~~~  210 (300)
T TIGR01292       140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLWNSTVKEIVG--DNKVE  210 (300)
T ss_pred             CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEeccEEEEEEc--cCcEE
Confidence            578999999999999999999999999999999876532   2    3355666776 999999999999985  33444


Q ss_pred             EEEeC---CC--CEEecCEEEEecCCC
Q 021871          285 AVKLE---DG--STIDADTVILLPYDQ  306 (306)
Q Consensus       285 ~v~~~---~G--~~i~~d~vv~a~g~~  306 (306)
                      .+++.   +|  .++++|.+|+|+|.+
T Consensus       211 ~v~~~~~~~g~~~~i~~D~vi~a~G~~  237 (300)
T TIGR01292       211 GVKIKNTVTGEEEELKVDGVFIAIGHE  237 (300)
T ss_pred             EEEEEecCCCceEEEEccEEEEeeCCC
Confidence            45442   23  479999999999964

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02546 glutathione reductase

Probab=99.94  E-value=2.2e-25  Score=203.50  Aligned_cols=238  Identities=19%  Similarity=0.293  Sum_probs=165.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC------CC-CCCCCCccccccccC--------------------
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AY-APYERPALTKGYLFP--------------------  103 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~------~~-~~~~~~~~~~~~~~~--------------------  103 (306)
                      .|||+|||||++|+.+|..++++|.   +|+|+|+.      +. -.+...-++.||+-.                    
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g  155 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGA---SAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG  155 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence            4899999999999999999999998   99999961      10 111111222223210                    


Q ss_pred             CC---CCCCCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccC
Q 021871          104 LD---KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF  177 (306)
Q Consensus       104 ~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~  177 (306)
                      +.   ....++.......   -......+...+++.+++++.+ ++..++..  .+.+ +|..+.||+||+|||+.+.. 
T Consensus       156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~~--~V~v-~G~~~~~D~LVIATGs~p~~-  230 (558)
T PLN02546        156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDPH--TVDV-DGKLYTARNILIAVGGRPFI-  230 (558)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccCC--EEEE-CCEEEECCEEEEeCCCCCCC-
Confidence            00   0011111100000   0011123344456678998866 55556553  4555 46679999999999999874 


Q ss_pred             CCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHH
Q 021871          178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ  257 (306)
Q Consensus       178 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (306)
                      |+     +||...   ..+++.+.+....+++++|||+|.+|+|+|..+..++.+|+++.+.+.+++. +++.+.+.+.+
T Consensus       231 P~-----IpG~~~---v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~~l~~  301 (558)
T PLN02546        231 PD-----IPGIEH---AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRDFVAE  301 (558)
T ss_pred             CC-----CCChhh---ccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHHHHHH
Confidence            44     444432   2344555444456899999999999999999999999999999999988875 78999999999


Q ss_pred             HHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       258 ~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      .++++||++++++.+.+++..+++.+ .+.+.+++.+.+|.||+|+|..
T Consensus       302 ~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~  349 (558)
T PLN02546        302 QMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRK  349 (558)
T ss_pred             HHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccc
Confidence            99999999999999999986445544 4666666455589999999963

>PTZ00058 glutathione reductase; Provisional

Probab=99.94  E-value=3e-25  Score=202.59  Aligned_cols=239  Identities=18%  Similarity=0.303  Sum_probs=159.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCC--------------------C-CC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL--------------------D-KK  107 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~--------------------~-~~  107 (306)
                      ...+||+|||||++|++||..+++.|.   +|++||++..-+   .-++.||+...                    . ..
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~---~ValIEk~~~GG---tCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~  119 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKA---KVALVEKDYLGG---TCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQF  119 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCC---eEEEEecccccc---cccccCCCCCchhhhhcccHHHHHHHHhcCCCccC
Confidence            356899999999999999999999998   999999863211   11122222100                    0 00


Q ss_pred             CCCCCCcccccC---CCCCcCChhHHhhcCeEEEeCCcEEEEeC--------------------CCCEE------EcCCC
Q 021871          108 PARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDI--------------------EKQTL------ITNSG  158 (306)
Q Consensus       108 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~v~~--------------------~~~~v------~~~~g  158 (306)
                      ..+++.......   ......+...+++.+++++.+... -++.                    +..++      ..+++
T Consensus       120 ~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~-f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g  198 (561)
T PTZ00058        120 SFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGS-LLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG  198 (561)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEE-EecCCEEEeeccccccccccccccccceeeeccceecCCC
Confidence            011111000000   011112334456678887765321 1111                    11122      23466


Q ss_pred             cEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 021871          159 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  238 (306)
Q Consensus       159 ~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~  238 (306)
                      ..++||++|+|||+.|.. |++     +|..+.   .+++.+++ +..+++++|||+|.+|+|+|..+...+.+|+++.+
T Consensus       199 ~~i~ad~lVIATGS~P~~-P~I-----pG~~~v---~ts~~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~  268 (561)
T PTZ00058        199 QVIEGKNILIAVGNKPIF-PDV-----KGKEFT---ISSDDFFK-IKEAKRIGIAGSGYIAVELINVVNRLGAESYIFAR  268 (561)
T ss_pred             cEEECCEEEEecCCCCCC-CCC-----CCceeE---EEHHHHhh-ccCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEe
Confidence            689999999999999874 544     443222   13344433 22389999999999999999999999999999999


Q ss_pred             CCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-CEEecCEEEEecCCC
Q 021871          239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTVILLPYDQ  306 (306)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~i~~d~vv~a~g~~  306 (306)
                      ++++++. +++++.+.+.+.++++||++++++.|.+++..+++.+ .+...++ +++++|.||+|+|..
T Consensus       269 ~~~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~  335 (561)
T PTZ00058        269 GNRLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRS  335 (561)
T ss_pred             ccccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCC
Confidence            9988875 7899999999999999999999999999986434333 2444344 479999999999863

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.94  E-value=1e-25  Score=203.85  Aligned_cols=240  Identities=15%  Similarity=0.204  Sum_probs=160.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC----------------------CCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP----------------------LDKK  107 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~----------------------~~~~  107 (306)
                      .++||+|||||++|+++|.+|+++|+   +|+|+|+.+..+-  .-++.|++..                      ....
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~~~GG--~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~   77 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGL---ETVCVERYSTLGG--VCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP   77 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCcccc--cccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC
Confidence            46999999999999999999999998   9999998753321  0111111100                      0000


Q ss_pred             CCCCCCcccccC---CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeCCCCccCCCCCC
Q 021871          108 PARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIG  182 (306)
Q Consensus       108 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G~~~~~~~~~~~  182 (306)
                      ..++..+.....   ..........+++.+++++.+ .+..++...-.+...++  ..+.||+||+|||+.+..+|.+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~  156 (471)
T PRK06467         78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH  156 (471)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC
Confidence            111111000000   000011223355678998866 44444433334444455  479999999999999875454333


Q ss_pred             CCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHc
Q 021871          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  262 (306)
Q Consensus       183 ~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (306)
                       +.+++.      +.....+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.++++
T Consensus       157 -~~~~v~------~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~  228 (471)
T PRK06467        157 -DDPRIW------DSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ  228 (471)
T ss_pred             -CCCcEE------ChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc
Confidence             122221      22233332345789999999999999999999999999999999999886 7899999999999988


Q ss_pred             CCEEEcCceEEEEEeCCCCcEEEEEeCC--C--CEEecCEEEEecCCC
Q 021871          263 GVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTVILLPYDQ  306 (306)
Q Consensus       263 gv~i~~~~~v~~i~~~~~~~v~~v~~~~--G--~~i~~d~vv~a~g~~  306 (306)
                       +++++++.|++++..+++ + .+++.+  |  +++++|.||+|+|.+
T Consensus       229 -v~i~~~~~v~~i~~~~~~-~-~v~~~~~~~~~~~i~~D~vi~a~G~~  273 (471)
T PRK06467        229 -FNIMLETKVTAVEAKEDG-I-YVTMEGKKAPAEPQRYDAVLVAVGRV  273 (471)
T ss_pred             -eEEEcCCEEEEEEEcCCE-E-EEEEEeCCCcceEEEeCEEEEeeccc
Confidence             999999999999864333 3 354433  2  369999999999963

>PRK14694 putative mercuric reductase; Provisional

Probab=99.94  E-value=4.8e-25  Score=199.70  Aligned_cols=240  Identities=16%  Similarity=0.300  Sum_probs=162.0

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCC------------CCCC--CCC--
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL------------DKKP--ARL--  111 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~------------~~~~--~~~--  111 (306)
                      +...+||+|||||++|+++|.+|++.|+   +|+|+|++..-+   .-.+.||+...            ....  ..+  
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~---~v~lie~~~~GG---tc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~   76 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGA---RVTLIERGTIGG---TCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSA   76 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEEcccccc---ceecCCccccHHHHHHHHHHHHHhhccccCCccc
Confidence            3457899999999999999999999998   999999874211   00112221000            0000  000  


Q ss_pred             --C--CcccccC------CCCCc-CChhHHhhc-CeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCccC
Q 021871          112 --P--GFHTCVG------SGGER-QTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRF  177 (306)
Q Consensus       112 --~--~~~~~~~------~~~~~-~~~~~~~~~-~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~~  177 (306)
                        +  .+..+..      ..... .....+++. +++++.+ ++..++.+...+.+.++.  .++||+||+|||+.+.. 
T Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~-  154 (468)
T PRK14694         77 QAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAE-  154 (468)
T ss_pred             CCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCC-
Confidence              0  0111100      00000 112223333 7888766 788888887788877763  79999999999999874 


Q ss_pred             CCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHH
Q 021871          178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ  257 (306)
Q Consensus       178 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (306)
                      |++|+.+..  .++.    ..........+++++|||+|.+|+|+|..+.+++.+|+++.+. .+++. .++.+.+.+.+
T Consensus       155 p~i~G~~~~--~~~~----~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l~~-~~~~~~~~l~~  226 (468)
T PRK14694        155 PPVPGLAET--PYLT----STSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS-RVLSQ-EDPAVGEAIEA  226 (468)
T ss_pred             CCCCCCCCC--ceEc----chhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CCCCC-CCHHHHHHHHH
Confidence            555553211  1221    1111222234789999999999999999999999999999874 55554 68889999999


Q ss_pred             HHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       258 ~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      .++++||++++++.|.+++. +++.+ .+.+.++ ++++|.||+|+|..
T Consensus       227 ~l~~~GI~v~~~~~v~~i~~-~~~~~-~v~~~~~-~i~~D~vi~a~G~~  272 (468)
T PRK14694        227 AFRREGIEVLKQTQASEVDY-NGREF-ILETNAG-TLRAEQLLVATGRT  272 (468)
T ss_pred             HHHhCCCEEEeCCEEEEEEE-cCCEE-EEEECCC-EEEeCEEEEccCCC
Confidence            99999999999999999985 34433 3655554 79999999999863

>TIGR02053 MerA mercuric reductase

Probab=99.94  E-value=1.4e-25  Score=203.22  Aligned_cols=236  Identities=20%  Similarity=0.322  Sum_probs=160.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC-----------C-CCCCCC------CCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP-----------L-DKKPAR------LPG  113 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~------~~~  113 (306)
                      +||+||||||+|+++|.+++++|+   +|+|+|++..-+   .-++.||+..           . ......      -..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~---~v~lie~~~~GG---~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~   74 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGA---SVAMVERGPLGG---TCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVD   74 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCcccC---CeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccC
Confidence            699999999999999999999998   999999875221   0011111100           0 000000      001


Q ss_pred             cccccC------CCC-CcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc-EEecCcEEEeeCCCCccCCCCCCCCC
Q 021871          114 FHTCVG------SGG-ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYL  185 (306)
Q Consensus       114 ~~~~~~------~~~-~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~-~~~~~~lila~G~~~~~~~~~~~~~~  185 (306)
                      +.....      ... ...+...+++.+++++.+ ++..+  +.+++.+.++. .+.||+||+|||+.+.. |++|+.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~~-p~i~G~~~  150 (463)
T TIGR02053        75 FGELLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFK--DPKTVKVDLGREVRGAKRFLIATGARPAI-PPIPGLKE  150 (463)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCCC-CCCCCccc
Confidence            111000      000 011334566778888766 34333  35677776653 68999999999999874 55555332


Q ss_pred             CCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCE
Q 021871          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  265 (306)
Q Consensus       186 ~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  265 (306)
                      .++  +    +++.+.+....+++++|||+|.+|+|+|..+...+.+|+++.+.+.+++. .++++...+.+.++++||+
T Consensus       151 ~~~--~----~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~  223 (463)
T TIGR02053       151 AGY--L----TSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIE  223 (463)
T ss_pred             Cce--E----CchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCCE
Confidence            222  1    23333332334689999999999999999999999999999999998886 6888999999999999999


Q ss_pred             EEcCceEEEEEeCCCCcEEEEEeC---CCCEEecCEEEEecCCC
Q 021871          266 FVKGASIKNLEAGSDGRVAAVKLE---DGSTIDADTVILLPYDQ  306 (306)
Q Consensus       266 i~~~~~v~~i~~~~~~~v~~v~~~---~G~~i~~d~vv~a~g~~  306 (306)
                      ++++++|++++.++++.  .+.+.   +++++++|.||+|+|..
T Consensus       224 i~~~~~V~~i~~~~~~~--~v~~~~~~~~~~i~~D~ViiA~G~~  265 (463)
T TIGR02053       224 VVTSAQVKAVSVRGGGK--IITVEKPGGQGEVEADELLVATGRR  265 (463)
T ss_pred             EEcCcEEEEEEEcCCEE--EEEEEeCCCceEEEeCEEEEeECCC
Confidence            99999999998633332  34432   23579999999999863

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.94  E-value=5.9e-25  Score=196.98  Aligned_cols=240  Identities=25%  Similarity=0.445  Sum_probs=208.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      .+.+++|||-|++|..+..++.+......+|+++-.++...|.+..+.. .+.+ ....           .++...-..|
T Consensus         2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~-vl~~-~~~~-----------edi~l~~~dw   68 (793)
T COG1251           2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAG-EKTA-----------EDISLNRNDW   68 (793)
T ss_pred             CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeecc-ccCC-CccH-----------HHHhccchhh
Confidence            3468999999999999999999965456799999999988888765554 2211 1111           1113566789


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCe
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  209 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  209 (306)
                      +++.+++++.+..++.+|++.+.|.++.|..+.||.||+|||+.|..+| +|+.+.++++.++++.+.+.+.+.-+..++
T Consensus        69 y~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P-iPG~~~~~v~~~R~i~D~~am~~~ar~~~~  147 (793)
T COG1251          69 YEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP-IPGSDLPGVFVYRTIDDVEAMLDCARNKKK  147 (793)
T ss_pred             HHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC-CCCCCCCCeeEEecHHHHHHHHHHHhccCC
Confidence            9999999999999999999999999999999999999999999999655 999999999999999999888887666677


Q ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC
Q 021871          210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  289 (306)
Q Consensus       210 v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~  289 (306)
                      -+|||+|..++|.|..|...+.+++++.-.++++.+.+++.-...+.+.++++|+++++++..+.+-  +.+++.++.++
T Consensus       148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~--g~~~~~~vr~~  225 (793)
T COG1251         148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIV--GEDKVEGVRFA  225 (793)
T ss_pred             cEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhh--cCcceeeEeec
Confidence            7999999999999999999999999999999999888899999999999999999999999888888  47777899999


Q ss_pred             CCCEEecCEEEEecCC
Q 021871          290 DGSTIDADTVILLPYD  305 (306)
Q Consensus       290 ~G~~i~~d~vv~a~g~  305 (306)
                      +|..+++|.||+|+|.
T Consensus       226 DG~~i~ad~VV~a~GI  241 (793)
T COG1251         226 DGTEIPADLVVMAVGI  241 (793)
T ss_pred             CCCcccceeEEEeccc
Confidence            9999999999999985

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.94  E-value=7.4e-25  Score=198.14  Aligned_cols=242  Identities=19%  Similarity=0.264  Sum_probs=156.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCC-----C------C----CCCCC---
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL-----D------K----KPARL---  111 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~-----~------~----~~~~~---  111 (306)
                      +.+||+||||||+|++||.+++++|+   +|+|+|+....+-  .-.+.||+...     .      .    ....+   
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~---~V~liE~~~~~GG--~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~   76 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGL---KVACVEGRSTLGG--TCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVK   76 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCceee--eeccCcccccHHHHHHhHHHHHHhhhhhhhcCcccc
Confidence            35899999999999999999999998   9999997433221  00111111000     0      0    00000   


Q ss_pred             C--CcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC-EEEcCCCc--EEecCcEEEeeCCCCccCCCC
Q 021871          112 P--GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TLITNSGK--LLKYGSLIVATGCTASRFPEK  180 (306)
Q Consensus       112 ~--~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~-~v~~~~g~--~~~~~~lila~G~~~~~~~~~  180 (306)
                      +  .+.....      ..........+++.+++++.+. . +++.... .+...++.  .++||+||+|||+.|..   +
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~---i  151 (466)
T PRK06115         77 PTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP---L  151 (466)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC---C
Confidence            0  0000000      0000111223444567776553 2 3333222 33444553  69999999999998753   3


Q ss_pred             CCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH
Q 021871          181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  260 (306)
Q Consensus       181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (306)
                      |+...++...+    +++..+.....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+++++. +++++.+.+.+.++
T Consensus       152 pg~~~~~~~~~----~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~  226 (466)
T PRK06115        152 PGVTIDNQRII----DSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALT  226 (466)
T ss_pred             CCCCCCCCeEE----CHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHH
Confidence            33223443333    33333333345899999999999999999999999999999999998886 78889999999999


Q ss_pred             HcCCEEEcCceEEEEEeCCCCcEEEEEe-CC--CCEEecCEEEEecCCC
Q 021871          261 QNGVKFVKGASIKNLEAGSDGRVAAVKL-ED--GSTIDADTVILLPYDQ  306 (306)
Q Consensus       261 ~~gv~i~~~~~v~~i~~~~~~~v~~v~~-~~--G~~i~~d~vv~a~g~~  306 (306)
                      ++||++++++.|++++.++++....+.. .+  ++.+++|.||+|+|..
T Consensus       227 ~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~  275 (466)
T PRK06115        227 KQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR  275 (466)
T ss_pred             hcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence            9999999999999998643443222332 12  3579999999999863

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.94  E-value=6.9e-25  Score=198.33  Aligned_cols=239  Identities=19%  Similarity=0.300  Sum_probs=162.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------------CC-----
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------------LD-----  105 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------------~~-----  105 (306)
                      ++||+|||||++|+.+|..++++|.   +|+++|++..-+   ...+.||+..                    ..     
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~---~v~~~e~~~~gG---~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~   74 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGA---DVTVIERDGLGG---AAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDG   74 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCC---cccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCc
Confidence            3689999999999999999999998   999999875321   1111122100                    00     


Q ss_pred             CCCCCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEe--CCCC--EEEcCCCc--EEecCcEEEeeCCCCcc
Q 021871          106 KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSID--IEKQ--TLITNSGK--LLKYGSLIVATGCTASR  176 (306)
Q Consensus       106 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~--~~~~--~v~~~~g~--~~~~~~lila~G~~~~~  176 (306)
                      ....+++......   .......+...+++.+++++.+ ++..++  .+..  .+.+.+|.  .+.||+||+|||+.+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~  153 (466)
T PRK07845         75 EARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRI  153 (466)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence            0000110000000   0000112334456678998876 455533  2233  45555664  79999999999999874


Q ss_pred             CCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHH
Q 021871          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  256 (306)
Q Consensus       177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (306)
                      +| .++...+.+....++.      +....+++++|||+|.+|+|+|..|++++.+|+++.+.+.+++. .++.+.+.+.
T Consensus       154 ~p-~~~~~~~~v~~~~~~~------~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~  225 (466)
T PRK07845        154 LP-TAEPDGERILTWRQLY------DLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLE  225 (466)
T ss_pred             CC-CCCCCCceEEeehhhh------cccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHH
Confidence            33 2222222333322222      21234689999999999999999999999999999999998886 6888999999


Q ss_pred             HHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       257 ~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      +.++++||+++++++|.+++.++ +.+ .+.+.+|+++++|.||+|+|.+
T Consensus       226 ~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~  273 (466)
T PRK07845        226 EVFARRGMTVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSV  273 (466)
T ss_pred             HHHHHCCcEEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCC
Confidence            99999999999999999998533 333 4777788899999999999863

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.93  E-value=7.7e-25  Score=200.15  Aligned_cols=229  Identities=24%  Similarity=0.291  Sum_probs=159.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...+||+|||||+|||+||.+|++.|+   +|+|++....          |..... ....+++++......+....+.+
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~---~v~li~~~~G----------G~~~~~-~~~~~~~~~~~~~~~~l~~~l~~  275 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGL---RTAMVAERIG----------GQVKDT-VGIENLISVPYTTGSQLAANLEE  275 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC----------CccccC-cCcccccccCCCCHHHHHHHHHH
Confidence            446899999999999999999999998   9999975311          011000 00001111111111222345666


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHHh
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS  203 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~  203 (306)
                      .+++.+++++.+++|.+++...  ..+.+.++..+.||++|+|+|+.++. +.+++..   .+++.+..   .+   ...
T Consensus       276 ~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~---~~---~~~  348 (515)
T TIGR03140       276 HIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCP---HC---DGP  348 (515)
T ss_pred             HHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEee---cc---Chh
Confidence            6778899999998999987654  35667777789999999999998764 4455421   22333321   11   112


Q ss_pred             hhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCc
Q 021871          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGR  282 (306)
Q Consensus       204 ~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~  282 (306)
                      ...+++++|+|+|.+|+|+|..|+..+.+|+++.+.+.+..       ...+.+.+++ .||++++++.|++++. ++++
T Consensus       349 ~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~~  420 (515)
T TIGR03140       349 FFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVG-DGDK  420 (515)
T ss_pred             hcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEc-CCCE
Confidence            34588999999999999999999999999999988776543       2345666665 5999999999999985 4456


Q ss_pred             EEEEEeCC---C--CEEecCEEEEecCCC
Q 021871          283 VAAVKLED---G--STIDADTVILLPYDQ  306 (306)
Q Consensus       283 v~~v~~~~---G--~~i~~d~vv~a~g~~  306 (306)
                      +.+|.+.+   |  +++++|.||+|+|..
T Consensus       421 v~~v~~~~~~~~~~~~i~~D~vi~a~G~~  449 (515)
T TIGR03140       421 VTGIRYQDRNSGEEKQLDLDGVFVQIGLV  449 (515)
T ss_pred             EEEEEEEECCCCcEEEEEcCEEEEEeCCc
Confidence            65676643   2  369999999999963

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.93  E-value=1.1e-24  Score=196.76  Aligned_cols=240  Identities=17%  Similarity=0.279  Sum_probs=158.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCCC------CCCCCCccccccccCC-----------CC--CCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY------APYERPALTKGYLFPL-----------DK--KPA  109 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~~------~~~~~~~~~~~~~~~~-----------~~--~~~  109 (306)
                      +.+||+|||||++|+.+|.+++++ |.   +|++||++..      ..+...-++.||+.+.           ..  ...
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~---~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~   78 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKK---RVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF   78 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCC---EEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence            458999999999999999999997 88   9999997400      0111112222332110           00  000


Q ss_pred             CC--------CCcccccC------CCCCcCChhHHhh-cCeEEEeCCcEEEEeCCCCEEEcCC--------CcEEecCcE
Q 021871          110 RL--------PGFHTCVG------SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNS--------GKLLKYGSL  166 (306)
Q Consensus       110 ~~--------~~~~~~~~------~~~~~~~~~~~~~-~~v~~~~~~~v~~v~~~~~~v~~~~--------g~~~~~~~l  166 (306)
                      .+        ..|..+..      ..........+++ .+++++.+. ..  ..+.+++.+.+        .+.+.||+|
T Consensus        79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a~--f~~~~~v~V~~~~~~~~~~~~~~~~d~l  155 (486)
T TIGR01423        79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-GA--LEDKNVVLVRESADPKSAVKERLQAEHI  155 (486)
T ss_pred             CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-EE--EccCCEEEEeeccCCCCCcceEEECCEE
Confidence            00        00100000      0001112222444 378887663 22  22344554431        247999999


Q ss_pred             EEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCccc
Q 021871          167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLL  243 (306)
Q Consensus       167 ila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~---~~~v~~~~~~~~~~  243 (306)
                      |+|||+.|.. |++     +|.....   +.+..+.....+++++|||+|.+|+|+|..+..+   +.+|+++.+.++++
T Consensus       156 IIATGs~p~~-p~i-----~G~~~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il  226 (486)
T TIGR01423       156 LLATGSWPQM-LGI-----PGIEHCI---SSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL  226 (486)
T ss_pred             EEecCCCCCC-CCC-----CChhhee---chhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence            9999999864 443     4432221   2222222223578999999999999999877665   88999999999988


Q ss_pred             ccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          244 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      +. +++++.+.+.+.++++||++++++.|++++..+++. ..+.+.+|+.+++|.||+|+|..
T Consensus       227 ~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~  287 (486)
T TIGR01423       227 RG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRV  287 (486)
T ss_pred             cc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCC
Confidence            76 799999999999999999999999999998643443 35777778899999999999963

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.93  E-value=1.3e-24  Score=198.96  Aligned_cols=229  Identities=20%  Similarity=0.252  Sum_probs=161.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...+||+|||||++||+||.+|++.|+   +++|+++....          .+.. .....+++++....+......+..
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~---~v~li~~~~GG----------~~~~-~~~~~~~~~~~~~~~~~l~~~l~~  274 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGI---RTGIVAERFGG----------QVLD-TMGIENFISVPETEGPKLAAALEE  274 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCC----------eeec-cCcccccCCCCCCCHHHHHHHHHH
Confidence            346899999999999999999999998   99999764111          1100 000111222222222233456677


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHHh
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS  203 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~  203 (306)
                      .+++++++++.+++|..++...  ..+.+.++..+.|+.+|+|+|..++. +.+|+..   ..++.+..   .+   ...
T Consensus       275 ~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~-~~ipG~~~~~~~~v~~~~---~~---~~~  347 (517)
T PRK15317        275 HVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN-MNVPGEDEYRNKGVAYCP---HC---DGP  347 (517)
T ss_pred             HHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC-CCCCCHHHhcCceEEEee---cc---Cch
Confidence            7888899999888999998763  46667777789999999999998764 4444421   12333221   11   112


Q ss_pred             hhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCc
Q 021871          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGR  282 (306)
Q Consensus       204 ~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~  282 (306)
                      ...+++|+|+|+|++|+|+|..|+..+.+|+++.+.+.+..   .    ..+.+.+.+ .||+++.++.+.++.. ++++
T Consensus       348 ~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~  419 (517)
T PRK15317        348 LFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDK  419 (517)
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCc
Confidence            33688999999999999999999999999999999876543   2    234555654 6999999999999985 4466


Q ss_pred             EEEEEeC---CCC--EEecCEEEEecCCC
Q 021871          283 VAAVKLE---DGS--TIDADTVILLPYDQ  306 (306)
Q Consensus       283 v~~v~~~---~G~--~i~~d~vv~a~g~~  306 (306)
                      +..+.+.   +|+  ++++|.+++|+|..
T Consensus       420 v~~v~~~~~~~g~~~~i~~D~v~~~~G~~  448 (517)
T PRK15317        420 VTGLTYKDRTTGEEHHLELEGVFVQIGLV  448 (517)
T ss_pred             EEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence            6566654   233  59999999999863

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.93  E-value=2.5e-24  Score=195.20  Aligned_cols=239  Identities=20%  Similarity=0.273  Sum_probs=158.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcccccccc-----------CCCC--CCCCC------
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF-----------PLDK--KPARL------  111 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~-----------~~~~--~~~~~------  111 (306)
                      ++||+|||||++|+++|++|+++|+   +|+|+|+. ..+-. + ...|+..           ....  ....+      
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~---~v~lie~~-~~GG~-~-~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~   74 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGL---KVALVEKE-YLGGT-C-LNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVS   74 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCC---eEEEEecC-CCCCc-e-eecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCc
Confidence            3899999999999999999999998   99999993 32210 0 0111100           0000  00000      


Q ss_pred             CCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC-cEEecCcEEEeeCCCCccCCCCCCCC
Q 021871          112 PGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGY  184 (306)
Q Consensus       112 ~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g-~~~~~~~lila~G~~~~~~~~~~~~~  184 (306)
                      ..+.....      ..........+++.+++++.+ ++..++.....+...++ ..+.||++|+|||+.+..+| .+ ..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~  151 (461)
T TIGR01350        75 VDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FD  151 (461)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CC
Confidence            00000000      000011123345567887765 44445544444544444 47999999999999987533 32 11


Q ss_pred             CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCC
Q 021871          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  264 (306)
Q Consensus       185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  264 (306)
                      .++. .+.   +++........+++++|||+|.+|+++|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.++++||
T Consensus       152 ~~~~-~~~---~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi  226 (461)
T TIGR01350       152 FDGE-VVI---TSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGV  226 (461)
T ss_pred             CCCc-eEE---cchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCC
Confidence            2222 121   22233332335789999999999999999999999999999999998875 788899999999999999


Q ss_pred             EEEcCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCC
Q 021871          265 KFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILLPYD  305 (306)
Q Consensus       265 ~i~~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~  305 (306)
                      +++.++.|.+++.+ ++.+ .+++.+|  +++++|.+|+|+|.
T Consensus       227 ~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~  267 (461)
T TIGR01350       227 KILTNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGR  267 (461)
T ss_pred             EEEeCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCC
Confidence            99999999999863 4444 3666667  47999999999986

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.93  E-value=1.5e-24  Score=196.40  Aligned_cols=238  Identities=23%  Similarity=0.328  Sum_probs=148.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCC-----------CC---CCCCCC---
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL-----------DK---KPARLP---  112 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~---  112 (306)
                      ..+||+|||||++|++||.+|+++|.   +|+|+|++..-+   .-...|++...           ..   ....+.   
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~---~V~lie~~~~GG---~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~   76 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGL---KTAVVEKKYWGG---VCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEV   76 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC---ceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCc
Confidence            35899999999999999999999998   999999863211   00111111000           00   000000   


Q ss_pred             --CcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeCCCCccCCCCCC
Q 021871          113 --GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIG  182 (306)
Q Consensus       113 --~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G~~~~~~~~~~~  182 (306)
                        .+.....      ..........++..+++...+ ...-++...-.+...++  ..++||+||+|||+.+..+|   +
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p---g  152 (466)
T PRK07818         77 TFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG-YGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLP---G  152 (466)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCC---C
Confidence              0000000      000000011112234444332 11112222223333344  36899999999999987433   2


Q ss_pred             CCCCC-EEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH
Q 021871          183 GYLPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  261 (306)
Q Consensus       183 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (306)
                      .+..+ +..      ..........+++++|||+|.+|+|+|..+++++.+|+++.+.+++++. .++++...+.+.+++
T Consensus       153 ~~~~~~v~~------~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~  225 (466)
T PRK07818        153 TSLSENVVT------YEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKK  225 (466)
T ss_pred             CCCCCcEEc------hHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHH
Confidence            21112 221      1111111235789999999999999999999999999999999999886 688899999999999


Q ss_pred             cCCEEEcCceEEEEEeCCCCcEEEEEe--CCC--CEEecCEEEEecCCC
Q 021871          262 NGVKFVKGASIKNLEAGSDGRVAAVKL--EDG--STIDADTVILLPYDQ  306 (306)
Q Consensus       262 ~gv~i~~~~~v~~i~~~~~~~v~~v~~--~~G--~~i~~d~vv~a~g~~  306 (306)
                      +||+++++++|++++. +++.+ .+.+  .+|  +++++|.||+|+|..
T Consensus       226 ~gV~i~~~~~v~~i~~-~~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~  272 (466)
T PRK07818        226 LGVKILTGTKVESIDD-NGSKV-TVTVSKKDGKAQELEADKVLQAIGFA  272 (466)
T ss_pred             CCCEEEECCEEEEEEE-eCCeE-EEEEEecCCCeEEEEeCEEEECcCcc
Confidence            9999999999999985 33333 3443  356  369999999999863

>PRK07846 mycothione reductase; Reviewed

Probab=99.93  E-value=7.2e-24  Score=190.71  Aligned_cols=234  Identities=21%  Similarity=0.348  Sum_probs=157.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcccccccc--------------------CCC--CCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF--------------------PLD--KKP  108 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~--------------------~~~--~~~  108 (306)
                      ++|++|||||++|.++|..  ..|.   +|.++|++..-+   .-++.||+.                    ...  ...
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~---~V~lie~~~~GG---tC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~   72 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADK---RIAIVEKGTFGG---TCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDG   72 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCC---cccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCc
Confidence            3799999999999999876  3587   999999864321   111112211                    000  001


Q ss_pred             CCCCCccccc---CCCCC-cCChhH-HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCC
Q 021871          109 ARLPGFHTCV---GSGGE-RQTPEW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG  183 (306)
Q Consensus       109 ~~~~~~~~~~---~~~~~-~~~~~~-~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~  183 (306)
                      .++.......   -.... ...... +++.+++++.+. ..-+  +.+++.+.+++.++||++|+|||+.+.. |++++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~~-p~i~g~  148 (451)
T PRK07846         73 VRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI--GPKTLRTGDGEEITADQVVIAAGSRPVI-PPVIAD  148 (451)
T ss_pred             CCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe--cCCEEEECCCCEEEeCEEEEcCCCCCCC-CCCCCc
Confidence            1111110000   00111 112233 556788887663 3223  5678888777789999999999999874 555542


Q ss_pred             CCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcC
Q 021871          184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  263 (306)
Q Consensus       184 ~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  263 (306)
                      .  +..++    +.+.+.+....+++++|||+|.+|+|+|..+++.+.+|+++.+.+.+++. +++++.+.+.+.+ +.+
T Consensus       149 ~--~~~~~----~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~~  220 (451)
T PRK07846        149 S--GVRYH----TSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SKR  220 (451)
T ss_pred             C--CccEE----chHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hcC
Confidence            2  22111    22333333345789999999999999999999999999999999998875 6888887777654 568


Q ss_pred             CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       264 v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      |+++++++|++++.+ ++.+ .+.+.+|+.+++|.||+|+|.+
T Consensus       221 v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~  261 (451)
T PRK07846        221 WDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRV  261 (451)
T ss_pred             eEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCc
Confidence            999999999999863 4333 4777788899999999999964

>PRK13748 putative mercuric reductase; Provisional

Probab=99.93  E-value=1.1e-23  Score=195.29  Aligned_cols=238  Identities=17%  Similarity=0.261  Sum_probs=157.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCC------------CCCCC--CC----
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL------------DKKPA--RL----  111 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~------------~~~~~--~~----  111 (306)
                      ..+||+|||||++|+++|.+|++.|.   +|+|+|++.. +-.  -++.||+...            .....  .+    
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~---~v~lie~~~~-GG~--c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~  170 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGA---RVTLIERGTI-GGT--CVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATV  170 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCcc-eee--ccccCccccHHHHHHHHHHHHHhcccccCCccCCC
Confidence            35899999999999999999999998   9999998732 100  0011111000            00000  00    


Q ss_pred             CC--cccccCC------CCC-cCChhHHhhc-CeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCccCCC
Q 021871          112 PG--FHTCVGS------GGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPE  179 (306)
Q Consensus       112 ~~--~~~~~~~------~~~-~~~~~~~~~~-~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~~~~  179 (306)
                      +.  +..+...      ... ......+++. +++++.+ ++..++.....+.+.++.  .+.||+||+|||+.+.. |+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~-p~  248 (561)
T PRK13748        171 PTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAV-PP  248 (561)
T ss_pred             CccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CC
Confidence            00  1000000      000 0111223343 6787765 566666555556655553  69999999999999874 55


Q ss_pred             CCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHH
Q 021871          180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY  259 (306)
Q Consensus       180 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (306)
                      +++.+  ...++    +..........+++++|||+|.+|+|+|..+.+.+.+|+++.+.. +++. +++.+.+.+.+.+
T Consensus       249 i~g~~--~~~~~----~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~-~d~~~~~~l~~~l  320 (561)
T PRK13748        249 IPGLK--ETPYW----TSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST-LFFR-EDPAIGEAVTAAF  320 (561)
T ss_pred             CCCCC--ccceE----ccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-cccc-cCHHHHHHHHHHH
Confidence            55422  11122    122222223357899999999999999999999999999999854 4554 6889999999999


Q ss_pred             HHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       260 ~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      ++.||++++++.|++++. +++.+ .+.+.++ .+++|.||+|+|..
T Consensus       321 ~~~gI~i~~~~~v~~i~~-~~~~~-~v~~~~~-~i~~D~vi~a~G~~  364 (561)
T PRK13748        321 RAEGIEVLEHTQASQVAH-VDGEF-VLTTGHG-ELRADKLLVATGRA  364 (561)
T ss_pred             HHCCCEEEcCCEEEEEEe-cCCEE-EEEecCC-eEEeCEEEEccCCC
Confidence            999999999999999985 34443 4666655 79999999999963

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.93  E-value=6.4e-24  Score=193.12  Aligned_cols=239  Identities=20%  Similarity=0.252  Sum_probs=152.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC----CC--CCCCCccccccccCC--------------CCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA----YA--PYERPALTKGYLFPL--------------DKKPAR  110 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~----~~--~~~~~~~~~~~~~~~--------------~~~~~~  110 (306)
                      .+||+||||||+|++||.+++++|+   +|+|+|+..    ..  .+...-++.||+...              ......
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~---~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g   81 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGK---KVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG   81 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence            5899999999999999999999998   999999632    10  011111111221100              000000


Q ss_pred             C-----CCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCC---CcEEecCcEEEeeCCCCcc
Q 021871          111 L-----PGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       111 ~-----~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~---g~~~~~~~lila~G~~~~~  176 (306)
                      +     ..+..+..      ......+...++..++++..+ ....  .+.+.+.+.+   +..++||+||+|||+.+..
T Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~  158 (499)
T PTZ00052         82 WKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGRPSI  158 (499)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence            0     00000000      000001111122245555543 2222  2334554432   3479999999999999875


Q ss_pred             CCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHH
Q 021871          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  256 (306)
Q Consensus       177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (306)
                      ++.+++..  .  ..   .+++.++.....+++++|||+|.+|+|+|..|+..+.+|+++.+. .+++. +++.+.+.+.
T Consensus       159 p~~i~G~~--~--~~---~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~-~d~~~~~~l~  229 (499)
T PTZ00052        159 PEDVPGAK--E--YS---ITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRG-FDRQCSEKVV  229 (499)
T ss_pred             CCCCCCcc--c--ee---ecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccccc-CCHHHHHHHH
Confidence            43344321  1  11   133344443345789999999999999999999999999999874 55554 7889999999


Q ss_pred             HHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       257 ~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      +.++++||++++++.+.+++.. ++.+ .+.+.+|+++++|.||+|+|.+
T Consensus       230 ~~l~~~GV~i~~~~~v~~v~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~  277 (499)
T PTZ00052        230 EYMKEQGTLFLEGVVPINIEKM-DDKI-KVLFSDGTTELFDTVLYATGRK  277 (499)
T ss_pred             HHHHHcCCEEEcCCeEEEEEEc-CCeE-EEEECCCCEEEcCEEEEeeCCC
Confidence            9999999999999999999853 3333 5777788889999999999964

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.92  E-value=9.5e-25  Score=195.61  Aligned_cols=234  Identities=15%  Similarity=0.166  Sum_probs=150.6

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--CCCC-ccc-------------cccccC-----CC-
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERP-ALT-------------KGYLFP-----LD-  105 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~-~~~-------------~~~~~~-----~~-  105 (306)
                      +.+.++|+|||||++||+||++|++.|+   +|+|+|+++..+  |... ...             .+.++.     .. 
T Consensus         7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~---~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~   83 (461)
T PLN02172          7 PINSQHVAVIGAGAAGLVAARELRREGH---TVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPR   83 (461)
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhcCC---eEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCH
Confidence            3456899999999999999999999998   999999987664  2111 000             000000     00 


Q ss_pred             --CCCCCCCCccc-----------ccCCCCCcCChhHHhhcCeE--EEeCCcEEEEeCCC--CEEEcCCC--c--EEecC
Q 021871          106 --KKPARLPGFHT-----------CVGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEK--QTLITNSG--K--LLKYG  164 (306)
Q Consensus       106 --~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~v~~~~--~~v~~~~g--~--~~~~~  164 (306)
                        ....++|....           ....+...++..+.+++++.  ++++++|.+++...  +.+.+.++  .  ...||
T Consensus        84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d  163 (461)
T PLN02172         84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFD  163 (461)
T ss_pred             hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcC
Confidence              00011111110           01122334566666778877  88899999998754  35655432  2  46799


Q ss_pred             cEEEeeCC--CCccCCCCCCC-CCCCEE-EEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871          165 SLIVATGC--TASRFPEKIGG-YLPGVH-YIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (306)
Q Consensus       165 ~lila~G~--~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~  240 (306)
                      .||+|+|.  .|+ .|.++|. .++|.. +...+.+.     ....+++|+|||+|.+|+|+|.+|+..+.+|+++.|..
T Consensus       164 ~VIvAtG~~~~P~-~P~ipG~~~f~G~~iHs~~yr~~-----~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        164 AVVVCNGHYTEPN-VAHIPGIKSWPGKQIHSHNYRVP-----DPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             EEEEeccCCCCCc-CCCCCCcccCCceEEEecccCCc-----cccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            99999995  444 4665553 244421 22222222     22368999999999999999999999999999999875


Q ss_pred             cccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      ....          + ..+.....+++.+..|..+.  +++   +|.+.||+.+++|.||+|||..
T Consensus       238 ~~~~----------~-~~~~~~~~~v~~~~~I~~~~--~~g---~V~f~DG~~~~~D~Ii~~TGy~  287 (461)
T PLN02172        238 ESDT----------Y-EKLPVPQNNLWMHSEIDTAH--EDG---SIVFKNGKVVYADTIVHCTGYK  287 (461)
T ss_pred             cccc----------c-ccCcCCCCceEECCccccee--cCC---eEEECCCCCccCCEEEECCcCC
Confidence            3211          0 11112234566677777766  334   3778999999999999999963

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.92  E-value=7.4e-24  Score=192.19  Aligned_cols=241  Identities=17%  Similarity=0.242  Sum_probs=158.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC------CCCCCCCCcccccccc-----------C-CCC--CCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AYAPYERPALTKGYLF-----------P-LDK--KPA  109 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~------~~~~~~~~~~~~~~~~-----------~-~~~--~~~  109 (306)
                      ..+|++|||||++|++||.++++.|.   +|+|+|+.      ...+-  .-.+.+++.           . ...  ...
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~---~v~lie~~~~~~g~~~~Gg--~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~   77 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGL---KVACIEAWKNPKGKPALGG--TCLNVGCIPSKALLASSEEFENAGHHFADH   77 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCC---eEEEEecccCCCCCCCcCC--ccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence            35899999999999999999999998   99999981      11110  001111110           0 000  000


Q ss_pred             CC--C----CcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeC--CCCEEEcC--CCcEEecCcEEEeeCCC
Q 021871          110 RL--P----GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCT  173 (306)
Q Consensus       110 ~~--~----~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~--~~~~v~~~--~g~~~~~~~lila~G~~  173 (306)
                      .+  .    .+..+..      ..........++..+++++.+ ++..++.  +.+++.+.  ++..++||+||+|||+.
T Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~  156 (475)
T PRK06327         78 GIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE  156 (475)
T ss_pred             CccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC
Confidence            00  0    0000000      000011223344567887755 4555553  24566654  34579999999999999


Q ss_pred             CccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHH
Q 021871          174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ  253 (306)
Q Consensus       174 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~  253 (306)
                      +..+|..+   ..+...+    +++..+.....+++++|+|+|.+|+|+|..+.+++.+|+++.+.+.+++. .++++.+
T Consensus       157 p~~~p~~~---~~~~~~~----~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~  228 (475)
T PRK06327        157 PRHLPGVP---FDNKIIL----DNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAK  228 (475)
T ss_pred             CCCCCCCC---CCCceEE----CcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHH
Confidence            86443221   2222222    23333333345789999999999999999999999999999999988875 6888999


Q ss_pred             HHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC--C--CEEecCEEEEecCCC
Q 021871          254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTVILLPYDQ  306 (306)
Q Consensus       254 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~--G--~~i~~d~vv~a~g~~  306 (306)
                      .+.+.++++||++++++.|++++.++ +.+ .+.+.+  |  +.+++|.+|+|+|..
T Consensus       229 ~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~  283 (475)
T PRK06327        229 EAAKAFTKQGLDIHLGVKIGEIKTGG-KGV-SVAYTDADGEAQTLEVDKLIVSIGRV  283 (475)
T ss_pred             HHHHHHHHcCcEEEeCcEEEEEEEcC-CEE-EEEEEeCCCceeEEEcCEEEEccCCc
Confidence            99999999999999999999998643 333 354433  3  469999999999863

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.92  E-value=9.9e-24  Score=190.64  Aligned_cols=236  Identities=18%  Similarity=0.242  Sum_probs=156.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------------C----CCCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------------L----DKKP  108 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------------~----~~~~  108 (306)
                      +|+|||||++|+++|.++++.|.   +|+|+|++..-+   .-++.||+..                    .    ....
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~---~V~lie~~~~GG---~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   75 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGK---NVTLIDEADLGG---TCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSIS   75 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccc---cCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCc
Confidence            89999999999999999999998   999999975421   1111111110                    0    0000


Q ss_pred             CCCCCcccccC---CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC-cEEecCcEEEeeCCCCccCCCCCCCC
Q 021871          109 ARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGY  184 (306)
Q Consensus       109 ~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g-~~~~~~~lila~G~~~~~~~~~~~~~  184 (306)
                      .++........   ..........+++.++++..+ ++..++.....+..+++ ..++||+||+|||+.+..+| +++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~  153 (458)
T PRK06912         76 IDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFD  153 (458)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCC
Confidence            01100000000   000011223344567887755 45445544434544455 37999999999999987443 33322


Q ss_pred             CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCC
Q 021871          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  264 (306)
Q Consensus       185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  264 (306)
                      .+.+.      ++....+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. .++++.+.+.+.++++||
T Consensus       154 ~~~v~------~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI  226 (458)
T PRK06912        154 GKWII------NSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGV  226 (458)
T ss_pred             CCeEE------cchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCC
Confidence            22221      22333333345789999999999999999999999999999999998886 688899999999999999


Q ss_pred             EEEcCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCCC
Q 021871          265 KFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILLPYDQ  306 (306)
Q Consensus       265 ~i~~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~~  306 (306)
                      ++++++.|++++. +++.+ .+.. +|  .++++|.||+|+|..
T Consensus       227 ~i~~~~~V~~i~~-~~~~v-~~~~-~g~~~~i~~D~vivA~G~~  267 (458)
T PRK06912        227 KIFTGAALKGLNS-YKKQA-LFEY-EGSIQEVNAEFVLVSVGRK  267 (458)
T ss_pred             EEEECCEEEEEEE-cCCEE-EEEE-CCceEEEEeCEEEEecCCc
Confidence            9999999999985 33332 3443 34  369999999999963

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.92  E-value=4.1e-23  Score=187.05  Aligned_cols=238  Identities=20%  Similarity=0.273  Sum_probs=154.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC---C---CCCCCccccccccCC-------------CCCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY---A---PYERPALTKGYLFPL-------------DKKPARL  111 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~---~---~~~~~~~~~~~~~~~-------------~~~~~~~  111 (306)
                      .+|++|||||++|+.+|..+++.|.   +|+++|+...   .   .+...-++.||+...             ......+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~---~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~   78 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGA---KVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGW   78 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCc
Confidence            4799999999999999999999998   9999997321   0   111111122222100             0000000


Q ss_pred             -------CCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEc--CCC--cEEecCcEEEeeCCCC
Q 021871          112 -------PGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT--NSG--KLLKYGSLIVATGCTA  174 (306)
Q Consensus       112 -------~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~--~~g--~~~~~~~lila~G~~~  174 (306)
                             ..|..+..      ..........++..+++++.+ ...-++.  .++.+  .++  ..++||+||+|||+.+
T Consensus        79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G-~a~f~~~--~~v~v~~~~g~~~~~~~d~lVIATGs~p  155 (484)
T TIGR01438        79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA-YAEFVDK--HRIKATNKKGKEKIYSAERFLIATGERP  155 (484)
T ss_pred             ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCC--CEEEEeccCCCceEEEeCEEEEecCCCC
Confidence                   00000000      000112223456678888765 3333343  33433  233  3699999999999998


Q ss_pred             ccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHH
Q 021871          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  254 (306)
Q Consensus       175 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~  254 (306)
                      .. |++|     |....  ..+++.++.....+++++|||+|.+|+|+|..+++.+.+|+++.+ +.+++. +++++.+.
T Consensus       156 ~~-p~ip-----G~~~~--~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~~~~~  225 (484)
T TIGR01438       156 RY-PGIP-----GAKEL--CITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQDCANK  225 (484)
T ss_pred             CC-CCCC-----Cccce--eecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHHHHHH
Confidence            74 4444     33111  113344443334578999999999999999999999999999988 466654 78999999


Q ss_pred             HHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC---CEEecCEEEEecCCC
Q 021871          255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTVILLPYDQ  306 (306)
Q Consensus       255 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G---~~i~~d~vv~a~g~~  306 (306)
                      +.+.++++||++++++.+.+++.. ++.+ .|++.+|   +++++|.||+|+|..
T Consensus       226 l~~~L~~~gV~i~~~~~v~~v~~~-~~~~-~v~~~~~~~~~~i~~D~vl~a~G~~  278 (484)
T TIGR01438       226 VGEHMEEHGVKFKRQFVPIKVEQI-EAKV-KVTFTDSTNGIEEEYDTVLLAIGRD  278 (484)
T ss_pred             HHHHHHHcCCEEEeCceEEEEEEc-CCeE-EEEEecCCcceEEEeCEEEEEecCC
Confidence            999999999999999999999863 3333 4555555   379999999999963

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK14727 putative mercuric reductase; Provisional

Probab=99.92  E-value=1.1e-23  Score=191.07  Aligned_cols=239  Identities=18%  Similarity=0.200  Sum_probs=154.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC-------------CCCCCCC----CC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP-------------LDKKPAR----LP  112 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~-------------~~~~~~~----~~  112 (306)
                      .++||+|||||++|+++|+.|+++|.   +|+++|+++..+-.  -++.||+..             ...+...    .+
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~---~v~~ie~~~~~GG~--c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~   89 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGA---RVTIIEGADVIGGC--CVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAP   89 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCcceeE--eccccccccHHHHHHHHHHHHHhhccccCcccCCC
Confidence            46899999999999999999999998   99999987443210  001111100             0000000    01


Q ss_pred             Cc--ccccC------CCCC-cCChhHHhhc-CeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCccCCCC
Q 021871          113 GF--HTCVG------SGGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEK  180 (306)
Q Consensus       113 ~~--~~~~~------~~~~-~~~~~~~~~~-~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~~~~~  180 (306)
                      .+  .....      .... ..+...++.. ++++..+ ...-++.....+...++.  .++||+||+|||+.+.. |++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~-p~i  167 (479)
T PRK14727         90 SIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTI-PPI  167 (479)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCC-CCC
Confidence            10  00000      0000 0112223333 6777655 333334333355555653  69999999999999874 444


Q ss_pred             CCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH
Q 021871          181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  260 (306)
Q Consensus       181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (306)
                      ++.+..  .++    +..........+++++|||+|.+|+|+|..+...+.+|+++.+. .+++. +++.+.+.+.+.++
T Consensus       168 ~G~~~~--~~~----~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~  239 (479)
T PRK14727        168 PGLMDT--PYW----TSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFE  239 (479)
T ss_pred             CCcCcc--cee----cchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHH
Confidence            442111  111    11112222234789999999999999999999999999999885 55554 68889999999999


Q ss_pred             HcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          261 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       261 ~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      ++||++++++.|++++..+ +.+ .+.+.+| ++++|.||+|+|..
T Consensus       240 ~~GV~i~~~~~V~~i~~~~-~~~-~v~~~~g-~i~aD~VlvA~G~~  282 (479)
T PRK14727        240 KEGIEVLNNTQASLVEHDD-NGF-VLTTGHG-ELRAEKLLISTGRH  282 (479)
T ss_pred             hCCCEEEcCcEEEEEEEeC-CEE-EEEEcCC-eEEeCEEEEccCCC
Confidence            9999999999999998633 333 4666665 79999999999963

>PRK12831 putative oxidoreductase; Provisional

Probab=99.92  E-value=1.1e-23  Score=189.66  Aligned_cols=227  Identities=21%  Similarity=0.277  Sum_probs=152.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      .+.+||+|||||++||++|++|+++|+   +|+|+|+.+..+        |.+.. ..+...++.      ........+
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~---~V~v~e~~~~~G--------G~l~~-gip~~~l~~------~~~~~~~~~  199 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGY---DVTIFEALHEPG--------GVLVY-GIPEFRLPK------ETVVKKEIE  199 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCCC--------Ceeee-cCCCccCCc------cHHHHHHHH
Confidence            456899999999999999999999998   999999876532        11110 000011111      001223346


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCC-cEEecCcEEEeeCC-CCccCCCCCCCCCCCEEEEccHHHHHHHHH----
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS----  202 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g-~~~~~~~lila~G~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----  202 (306)
                      ++++.++++++++.+.      ..+.+++. ..+.||.|++|+|+ .++. +++++.+.+++....++........    
T Consensus       200 ~~~~~gv~i~~~~~v~------~~v~~~~~~~~~~~d~viiAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~~~~~  272 (464)
T PRK12831        200 NIKKLGVKIETNVVVG------KTVTIDELLEEEGFDAVFIGSGAGLPKF-MGIPGENLNGVFSANEFLTRVNLMKAYKP  272 (464)
T ss_pred             HHHHcCCEEEcCCEEC------CcCCHHHHHhccCCCEEEEeCCCCCCCC-CCCCCcCCcCcEEHHHHHHHHHhcccccc
Confidence            6778899999886542      12222222 23569999999998 4654 5677776777765443333221111    


Q ss_pred             ----hhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          203 ----SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       203 ----~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                          ....+++|+|||+|++|+|+|..+.+.+.+|+++++... .++.  .   ...+ +.+++.||++++++.+.++..
T Consensus       273 ~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a--~---~~e~-~~a~~eGV~i~~~~~~~~i~~  346 (464)
T PRK12831        273 EYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPA--R---VEEV-HHAKEEGVIFDLLTNPVEILG  346 (464)
T ss_pred             cccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCC--C---HHHH-HHHHHcCCEEEecccceEEEe
Confidence                124578999999999999999999999999999998653 2221  1   1122 345778999999999999976


Q ss_pred             CCCCcEEEEEeC------------------CCC--EEecCEEEEecCCC
Q 021871          278 GSDGRVAAVKLE------------------DGS--TIDADTVILLPYDQ  306 (306)
Q Consensus       278 ~~~~~v~~v~~~------------------~G~--~i~~d~vv~a~g~~  306 (306)
                      +++|++.+|++.                  +|+  .+++|.||+|+|+.
T Consensus       347 ~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~  395 (464)
T PRK12831        347 DENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTS  395 (464)
T ss_pred             cCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCC
Confidence            556776665542                  232  59999999999973

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.92  E-value=7.1e-24  Score=190.66  Aligned_cols=226  Identities=20%  Similarity=0.240  Sum_probs=152.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...++|+|||||++||++|..|++.|+   +|+|+|+.+..+        |.+.. ..+...++  .     +.......
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~---~V~vie~~~~~G--------G~l~~-gip~~~~~--~-----~~~~~~~~  191 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGH---SVTVFEALHKPG--------GVVTY-GIPEFRLP--K-----EIVVTEIK  191 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCCC--------cEeee-cCCCccCC--H-----HHHHHHHH
Confidence            456899999999999999999999998   999999876432        11110 00001111  0     01123345


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCC-CCccCCCCCCCCCCCEEEEccHHHHHHHHH-----
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS-----  202 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----  202 (306)
                      .+.+.+++++.+..+      ...+.+++. ...||+|++|+|+ .+. .+.+|+.+.+++....++.....+..     
T Consensus       192 ~l~~~gv~~~~~~~v------~~~v~~~~~-~~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~  263 (449)
T TIGR01316       192 TLKKLGVTFRMNFLV------GKTATLEEL-FSQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAYEFP  263 (449)
T ss_pred             HHHhCCcEEEeCCcc------CCcCCHHHH-HhhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhccccccc
Confidence            567789999887643      222333322 2479999999998 455 45677766777665443332222111     


Q ss_pred             ----hhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC
Q 021871          203 ----SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  278 (306)
Q Consensus       203 ----~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  278 (306)
                          ....+++|+|||+|++|+|+|..+.+.+.+|+++++.+..... ..    ....+.+++.||++++++.++++..+
T Consensus       264 ~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~-~~----~~~~~~l~~~GV~~~~~~~~~~i~~~  338 (449)
T TIGR01316       264 HADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMT-AR----VEEIAHAEEEGVKFHFLCQPVEIIGD  338 (449)
T ss_pred             ccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCC-CC----HHHHHHHHhCCCEEEeccCcEEEEEc
Confidence                1235689999999999999999999999999999987642111 11    22335678899999999999999754


Q ss_pred             CCCcEEEEEeC---------CC-----------CEEecCEEEEecCCC
Q 021871          279 SDGRVAAVKLE---------DG-----------STIDADTVILLPYDQ  306 (306)
Q Consensus       279 ~~~~v~~v~~~---------~G-----------~~i~~d~vv~a~g~~  306 (306)
                      ++|++.+|++.         +|           .++++|.||+|+|+.
T Consensus       339 ~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~  386 (449)
T TIGR01316       339 EEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNG  386 (449)
T ss_pred             CCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCC
Confidence            56766666543         23           269999999999974

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.92  E-value=1.2e-23  Score=193.80  Aligned_cols=227  Identities=19%  Similarity=0.252  Sum_probs=150.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +.+||+|||||+|||+||.+|+++|+   +|+|+|++...+         .+... ....++|++....+......+...
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~---~V~liE~~~~GG---------~~~~~-~~i~~~pg~~~~~~~~l~~~l~~~   69 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKL---DTLIIEKDDFGG---------QITIT-SEVVNYPGILNTTGPELMQEMRQQ   69 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCc---------eEEec-cccccCCCCcCCCHHHHHHHHHHH
Confidence            45899999999999999999999998   999999864321         11000 001122222111111122344555


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHHhh
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL  204 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~  204 (306)
                      +++++++++ +.+|..++.+..  .+.+.++ .+.++++|+|||+.++. |++++.+   ..++.++...      ....
T Consensus        70 ~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~~v~~~~~~------~~~~  140 (555)
T TIGR03143        70 AQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGRGVAYCATC------DGEF  140 (555)
T ss_pred             HHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCceEEEEeec------Chhh
Confidence            667888876 668888887653  4555555 58999999999999875 5555531   2334333211      1123


Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEE
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~  284 (306)
                      ..+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+..   ....   ..+.++.+||++++++.|+++..  ++.+.
T Consensus       141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~---~~~~~~~~gV~i~~~~~V~~i~~--~~~v~  212 (555)
T TIGR03143       141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLI---AEKVKNHPKIEVKFNTELKEATG--DDGLR  212 (555)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHH---HHHHHhCCCcEEEeCCEEEEEEc--CCcEE
Confidence            4689999999999999999999999999999999886532   2222   22334457999999999999983  34333


Q ss_pred             EEE---eCCCCEE----ecCE----EEEecCCC
Q 021871          285 AVK---LEDGSTI----DADT----VILLPYDQ  306 (306)
Q Consensus       285 ~v~---~~~G~~i----~~d~----vv~a~g~~  306 (306)
                      .+.   ..+|+..    ++|.    ||+|+|.+
T Consensus       213 ~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~  245 (555)
T TIGR03143       213 YAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYA  245 (555)
T ss_pred             EEEEEECCCCCEEEEeccccccceEEEEEeCCC
Confidence            332   3456543    3666    99999974

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.92  E-value=7.3e-24  Score=192.06  Aligned_cols=236  Identities=21%  Similarity=0.319  Sum_probs=151.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcccccccc--------------------CCCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF--------------------PLDKKPA  109 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~--------------------~~~~~~~  109 (306)
                      +.+||+|||||++|+++|.+|++.|+   +|+|+|++ ..+-.  ....||+.                    .......
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~-~~GG~--~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~   75 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGK---KVALIEKG-PLGGT--CLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGP   75 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCC---eEEEEeCC-ccccc--eeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence            46899999999999999999999998   99999994 32210  00111110                    0000000


Q ss_pred             CCCCcccccC------CCCCcCC-hhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCC
Q 021871          110 RLPGFHTCVG------SGGERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG  182 (306)
Q Consensus       110 ~~~~~~~~~~------~~~~~~~-~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~  182 (306)
                       ...+..+..      ......+ ...++..++++..+ +...++  ...+.+ ++..+.||++|+|||+.   .|.+|+
T Consensus        76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~~~v~v-~~~~~~~d~lIiATGs~---~p~ipg  147 (460)
T PRK06292         76 -KIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVD--PNTVEV-NGERIEAKNIVIATGSR---VPPIPG  147 (460)
T ss_pred             -ccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEcc--CCEEEE-CcEEEEeCEEEEeCCCC---CCCCCC
Confidence             001111000      0000111 12234456666543 333333  234444 56689999999999998   244444


Q ss_pred             CCC-CCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH
Q 021871          183 GYL-PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  261 (306)
Q Consensus       183 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (306)
                      ... .+...+    +++...+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+++++. +++++.+.+.+.+++
T Consensus       148 ~~~~~~~~~~----~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~  222 (460)
T PRK06292        148 VWLILGDRLL----TSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSK  222 (460)
T ss_pred             CcccCCCcEE----CchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhh
Confidence            211 111111    22333322345789999999999999999999999999999999998875 788999999999999


Q ss_pred             cCCEEEcCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCCC
Q 021871          262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILLPYDQ  306 (306)
Q Consensus       262 ~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~~  306 (306)
                      + |++++++.|++++..++..+ .++..+|  +++++|.+|+|+|..
T Consensus       223 ~-I~i~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~  267 (460)
T PRK06292        223 E-FKIKLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRR  267 (460)
T ss_pred             c-cEEEcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCc
Confidence            9 99999999999985333222 2333333  479999999999863

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.91  E-value=3.1e-22  Score=179.73  Aligned_cols=224  Identities=23%  Similarity=0.356  Sum_probs=166.9

Q ss_pred             HHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCC-hhHHhhcCeEEEeCCcE
Q 021871           65 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT-PEWYKEKGIEMIYQDPV  143 (306)
Q Consensus        65 ~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~v  143 (306)
                      +||++|++.+ ++.+|+|+|+++.+.|....++. +..........           ...+. .+++.+.+++++.+.+|
T Consensus         1 saA~~l~~~~-~~~~Vtlid~~~~~~~~~~~l~~-~~~g~~~~~~~-----------~~~~~~~~~~~~~gv~~~~~~~V   67 (427)
T TIGR03385         1 SAASRVRRLD-KESDIIVFEKTEDVSFANCGLPY-VIGGVIDDRNK-----------LLAYTPEVFIKKRGIDVKTNHEV   67 (427)
T ss_pred             CHHHHHHhhC-CCCcEEEEEcCCceeEEcCCCCe-EeccccCCHHH-----------cccCCHHHHHHhcCCeEEecCEE
Confidence            4789998875 46799999999877654322221 11110000000           01222 34458889999888999


Q ss_pred             EEEeCCCCEEEcCC---CcEEe--cCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhh--hcCCeEEEEcCC
Q 021871          144 TSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGG  216 (306)
Q Consensus       144 ~~v~~~~~~v~~~~---g~~~~--~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~v~viG~g  216 (306)
                      ..++...+.+.+.+   +..+.  ||+||+|||+.+.. |++++.+.+++....++.+...+...+  ..+++++|+|+|
T Consensus        68 ~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~-~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG  146 (427)
T TIGR03385        68 IEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV-PNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG  146 (427)
T ss_pred             EEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCC-CCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence            99998888776643   34677  99999999999874 556665556666667777766666555  357899999999


Q ss_pred             HHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEec
Q 021871          217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA  296 (306)
Q Consensus       217 ~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~  296 (306)
                      .+|+|+|..+++.+.+|+++.+.+.++...+++.+.+.+.+.++++||+++.++.|.+++.  ++.+  +.+.+|+++++
T Consensus       147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~  222 (427)
T TIGR03385       147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA  222 (427)
T ss_pred             HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence            9999999999999999999999988754346788889999999999999999999999984  3333  45677889999


Q ss_pred             CEEEEecCCC
Q 021871          297 DTVILLPYDQ  306 (306)
Q Consensus       297 d~vv~a~g~~  306 (306)
                      |.+|+|+|..
T Consensus       223 D~vi~a~G~~  232 (427)
T TIGR03385       223 DMVILATGIK  232 (427)
T ss_pred             CEEEECCCcc
Confidence            9999999963

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.91  E-value=2.2e-22  Score=186.23  Aligned_cols=148  Identities=20%  Similarity=0.288  Sum_probs=109.4

Q ss_pred             CEEEc-CCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhC
Q 021871          151 QTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW  229 (306)
Q Consensus       151 ~~v~~-~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~  229 (306)
                      .++.. .++..+.||+||+|||+.|.. |+.++.+.+.+..      ++...+....+++++|||+|.+|+|+|..+...
T Consensus       262 ~~v~v~~~g~~i~ad~lIIATGS~P~~-P~~~~~~~~~V~t------s~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~  334 (659)
T PTZ00153        262 NTIKSEKSGKEFKVKNIIIATGSTPNI-PDNIEVDQKSVFT------SDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTAL  334 (659)
T ss_pred             CeEEEccCCEEEECCEEEEcCCCCCCC-CCCCCCCCCcEEe------hHHhhhhhhcCCceEEECCCHHHHHHHHHHHhC
Confidence            34443 356689999999999999874 4333322233332      223222223478999999999999999999999


Q ss_pred             CCcEEEEecCCcccccccCHHHHHHHHHHH-HHcCCEEEcCceEEEEEeCCCCcEEEEEeCC-------C--------CE
Q 021871          230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLED-------G--------ST  293 (306)
Q Consensus       230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~-------G--------~~  293 (306)
                      +.+|+++.+.+++++. +++++.+.+.+.+ +++||++++++.|++|+..+++..+.+.+.+       +        ++
T Consensus       335 G~eVTLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~  413 (659)
T PTZ00153        335 GSEVVSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKE  413 (659)
T ss_pred             CCeEEEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceE
Confidence            9999999999999986 7888888888875 6789999999999999864333322344321       1        26


Q ss_pred             EecCEEEEecCCC
Q 021871          294 IDADTVILLPYDQ  306 (306)
Q Consensus       294 i~~d~vv~a~g~~  306 (306)
                      +++|.||||+|.+
T Consensus       414 i~aD~VlvAtGr~  426 (659)
T PTZ00153        414 TYVDSCLVATGRK  426 (659)
T ss_pred             EEcCEEEEEECcc
Confidence            9999999999964

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.91  E-value=2.9e-23  Score=187.60  Aligned_cols=225  Identities=24%  Similarity=0.280  Sum_probs=148.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...++|+|||||++||++|..|+++|+   +|+|+|+.+..+        |.+.. ..+...++       .+.......
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~---~V~lie~~~~~g--------G~l~~-gip~~~~~-------~~~~~~~~~  198 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGY---DVTIFEARDKAG--------GLLRY-GIPEFRLP-------KDIVDREVE  198 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCCCC--------cEeec-cCCCccCC-------HHHHHHHHH
Confidence            456899999999999999999999998   999999986542        11100 00000111       011234456


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHH---Hhhh
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLE  205 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~  205 (306)
                      ++++.+++++.++.+.      ..+.+++. .+.||+||+|||+.....+.+++.+.+++....++.......   ....
T Consensus       199 ~l~~~gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~  271 (457)
T PRK11749        199 RLLKLGVEIRTNTEVG------RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLP  271 (457)
T ss_pred             HHHHcCCEEEeCCEEC------CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCC
Confidence            6777899998886541      12222222 268999999999864334556665566665432222221110   1123


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  283 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v  283 (306)
                      .+++|+|||+|.+|+|+|..+...+. +|+++.+.+. .++.  ..    ...+.+++.||++++++.+.++..+ ++.+
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~----~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~  344 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SE----EEVEHAKEEGVEFEWLAAPVEILGD-EGRV  344 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CH----HHHHHHHHCCCEEEecCCcEEEEec-CCce
Confidence            57899999999999999999999886 8999998654 2221  22    2346678899999999999999853 3332


Q ss_pred             EEEEe-------------------CCCCEEecCEEEEecCCC
Q 021871          284 AAVKL-------------------EDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       284 ~~v~~-------------------~~G~~i~~d~vv~a~g~~  306 (306)
                      .+|++                   .+++++++|.||+|+|+.
T Consensus       345 ~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~  386 (457)
T PRK11749        345 TGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT  386 (457)
T ss_pred             EEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCC
Confidence            23332                   123479999999999963

>TIGR03452 mycothione_red mycothione reductase

Probab=99.91  E-value=4.2e-22  Score=179.43  Aligned_cols=231  Identities=21%  Similarity=0.351  Sum_probs=154.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcccccccc--------------------CCC--CCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF--------------------PLD--KKP  108 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~--------------------~~~--~~~  108 (306)
                      ++|++|||+|++|..+|..  ..|.   +|+++|++..-+   .-++.||+.                    ...  ...
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~---~V~lie~~~~GG---tC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~   73 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADK---RIAIVEKGTFGG---TCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDS   73 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCC---eeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCc
Confidence            5899999999999998654  4687   999999864321   111112210                    000  001


Q ss_pred             CCCCCcccccCCC-------CCcCChhHH---hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCC
Q 021871          109 ARLPGFHTCVGSG-------GERQTPEWY---KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP  178 (306)
Q Consensus       109 ~~~~~~~~~~~~~-------~~~~~~~~~---~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~  178 (306)
                      .+   |..+....       .......+.   ++.+++++.+..+..   +.+++.+.++..++||+||+|||+.|.. |
T Consensus        74 ~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~-p  146 (452)
T TIGR03452        74 VR---WPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYI-P  146 (452)
T ss_pred             cC---HHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCC-C
Confidence            11   11111111       001111111   236888887654432   5667888777789999999999999874 3


Q ss_pred             CCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHH
Q 021871          179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL  258 (306)
Q Consensus       179 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  258 (306)
                      +..+  ..+..++    +.+...+....+++++|||+|.+|+|+|..+...+.+|+++.+.+.+++. +++++...+.+.
T Consensus       147 ~~~~--~~~~~~~----~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~  219 (452)
T TIGR03452       147 PAIA--DSGVRYH----TNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEI  219 (452)
T ss_pred             CCCC--CCCCEEE----cHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHH
Confidence            3222  1233222    22233332335789999999999999999999999999999999988775 688888777765


Q ss_pred             HHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       259 ~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      + +.||++++++.|++++.+ ++.+ .+++.+|+++++|.+|+|+|..
T Consensus       220 ~-~~gI~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~  264 (452)
T TIGR03452       220 A-KKKWDIRLGRNVTAVEQD-GDGV-TLTLDDGSTVTADVLLVATGRV  264 (452)
T ss_pred             H-hcCCEEEeCCEEEEEEEc-CCeE-EEEEcCCCEEEcCEEEEeeccC
Confidence            4 468999999999999863 3333 4777788889999999999863

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.90  E-value=1.2e-22  Score=195.11  Aligned_cols=227  Identities=19%  Similarity=0.197  Sum_probs=153.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...++|+|||||||||+||++|+++|+   +|+|+|+.+..        +|.+.. .-+.+.+|       .+.......
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~---~VtVfE~~~~~--------GG~l~y-GIP~~rlp-------~~vi~~~i~  364 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGF---PVTVFEAFHDL--------GGVLRY-GIPEFRLP-------NQLIDDVVE  364 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEeeCCCC--------CceEEc-cCCCCcCh-------HHHHHHHHH
Confidence            346899999999999999999999999   99999987653        222211 01111111       001123345


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHh-----
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----  203 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----  203 (306)
                      .+++.|++++.+..+      +..+.+++.....||.|++|+|+...+.+.+||.+.+|+....++.........     
T Consensus       365 ~l~~~Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~  438 (944)
T PRK12779        365 KIKLLGGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDY  438 (944)
T ss_pred             HHHhhcCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccc
Confidence            677789999887544      234555555556899999999996333466788778888765544433221110     


Q ss_pred             -----hhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          204 -----LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       204 -----~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                           ...+++|+|||+|++|+|.|..+.+.+.+|+++++.+. .++     .....+.. ..+.||++++++.++++..
T Consensus       439 ~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mp-----a~~~e~~~-a~eeGV~~~~~~~p~~i~~  512 (944)
T PRK12779        439 ETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP-----ARVEELHH-ALEEGINLAVLRAPREFIG  512 (944)
T ss_pred             cccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCccccc-----ccHHHHHH-HHHCCCEEEeCcceEEEEe
Confidence                 12478999999999999999999999999999998753 222     12233333 3567999999999999874


Q ss_pred             CC-CCcEEEEEe---------C--------CC--CEEecCEEEEecCCC
Q 021871          278 GS-DGRVAAVKL---------E--------DG--STIDADTVILLPYDQ  306 (306)
Q Consensus       278 ~~-~~~v~~v~~---------~--------~G--~~i~~d~vv~a~g~~  306 (306)
                      ++ ++++.++++         .        .|  .++++|.||+|+|+.
T Consensus       513 d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~  561 (944)
T PRK12779        513 DDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNT  561 (944)
T ss_pred             cCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcC
Confidence            32 335544432         1        23  259999999999963

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.90  E-value=1.5e-23  Score=190.25  Aligned_cols=181  Identities=20%  Similarity=0.288  Sum_probs=111.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--CCCC--------cccccc---------ccCCCCCCCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERP--------ALTKGY---------LFPLDKKPARLP  112 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~--------~~~~~~---------~~~~~~~~~~~~  112 (306)
                      ++|+|||||++||++|+.|.+.|+   +++++|+++..+  |...        .+..+.         .++....+.++|
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~---~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p   78 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGL---EVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP   78 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT----EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC---CCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence            689999999999999999999999   999999998876  3210        011111         122223333444


Q ss_pred             CcccccCCCCCcCChhHHhhcCe--EEEeCCcEEEEeCCC-------CEEEcCC-Cc--EEecCcEEEeeCCCCcc-CCC
Q 021871          113 GFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCTASR-FPE  179 (306)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~v~~~~-------~~v~~~~-g~--~~~~~~lila~G~~~~~-~~~  179 (306)
                      .|..  ..+...++..+++++++  .++++++|.++....       +.+.+++ +.  ...||+|++|+|..... +|.
T Consensus        79 ~f~~--~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~  156 (531)
T PF00743_consen   79 DFPS--HSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPE  156 (531)
T ss_dssp             SSEB--HHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB--
T ss_pred             CCCC--HHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCCh
Confidence            4432  12233566777777776  478899999997532       3566653 32  56799999999976431 232


Q ss_pred             --CCCC-CCCCEEEEccHHHHHHHH-HhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          180 --KIGG-YLPGVHYIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       180 --~~~~-~~~g~~~~~~~~~~~~~~-~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                        +||. .++|...     ++..+. ....++|+|+|||+|.||+|+|.+++..+.+|++..|...+
T Consensus       157 ~~~~G~e~F~G~i~-----HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~w  218 (531)
T PF00743_consen  157 PSFPGLEKFKGEII-----HSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAW  218 (531)
T ss_dssp             ---CTGGGHCSEEE-----EGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----
T ss_pred             hhhhhhhcCCeeEE-----ccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccc
Confidence              3332 1333221     222222 23357999999999999999999999999999988887664

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.90  E-value=1.4e-22  Score=193.04  Aligned_cols=226  Identities=21%  Similarity=0.254  Sum_probs=152.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...++|+|||||+|||+||.+|+++|+   +|+|+|+.+..+        |.+.. .-+...+|.  .     ......+
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~---~V~v~e~~~~~G--------G~l~~-gip~~rlp~--~-----~~~~~~~  489 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGY---DVTVFEALHEIG--------GVLKY-GIPEFRLPK--K-----IVDVEIE  489 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC---eEEEEecCCCCC--------Ceeee-cCCCCCCCH--H-----HHHHHHH
Confidence            346799999999999999999999998   999999865431        11110 001111111  0     1123345


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCC-CccCCCCCCCCCCCEEEEccHHHHHHHHH-----
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS-----  202 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----  202 (306)
                      .+.+.+++++.+..+      ...+.+++.....||.|++|+|+. ++ .+.+|+.+.+++....++........     
T Consensus       490 ~l~~~gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~  562 (752)
T PRK12778        490 NLKKLGVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLPN-FMNIPGENSNGVMSSNEYLTRVNLMDAASPD  562 (752)
T ss_pred             HHHHCCCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCCCCCCcEEHHHHHHHHhhccccccc
Confidence            677789999887544      223334333356799999999985 55 45677777777765544333222111     


Q ss_pred             ---hhhcCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          203 ---SLEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       203 ---~~~~~~~v~viG~g~~a~e~a~~l~~~~~~-v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                         ....+++|+|||+|++|+|+|..+.+.+.+ |+++++.+. .++.  .   ...+ +.++++||++++++.+.++..
T Consensus       563 ~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~--~---~~e~-~~~~~~GV~i~~~~~~~~i~~  636 (752)
T PRK12778        563 SDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA--R---LEEV-KHAKEEGIEFLTLHNPIEYLA  636 (752)
T ss_pred             ccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--C---HHHH-HHHHHcCCEEEecCcceEEEE
Confidence               123568999999999999999999999887 999998754 2221  1   1112 346788999999999999876


Q ss_pred             CCCCcEEEEEeC---------CC-----------CEEecCEEEEecCCC
Q 021871          278 GSDGRVAAVKLE---------DG-----------STIDADTVILLPYDQ  306 (306)
Q Consensus       278 ~~~~~v~~v~~~---------~G-----------~~i~~d~vv~a~g~~  306 (306)
                      ++++++.+|++.         +|           .++++|.||+|+|+.
T Consensus       637 ~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~  685 (752)
T PRK12778        637 DEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS  685 (752)
T ss_pred             CCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCC
Confidence            556776666542         22           259999999999963

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.89  E-value=7.4e-22  Score=187.44  Aligned_cols=222  Identities=23%  Similarity=0.321  Sum_probs=142.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...++|+|||||+|||++|++|+++|+   +|+|+|+.+..+        |.+.. .     +|++..  ..+......+
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~---~VtV~Ek~~~~G--------G~lr~-~-----IP~~Rl--p~evL~~die  597 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGH---PVTVFEREENAG--------GVVKN-I-----IPQFRI--PAELIQHDIE  597 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC---eEEEEecccccC--------cceee-e-----cccccc--cHHHHHHHHH
Confidence            356899999999999999999999998   999999886642        11110 0     111100  0000122345


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEcc-HHHHHHHHHhhhcC
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD-VADADALISSLEKA  207 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  207 (306)
                      ++.+.|+++++++.+ .++       +++.....||+||+|||+.+...+.+++.+ +++....+ +.+..........+
T Consensus       598 ~l~~~GVe~~~gt~V-di~-------le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~~G  668 (1019)
T PRK09853        598 FVKAHGVKFEFGCSP-DLT-------VEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTALKLG  668 (1019)
T ss_pred             HHHHcCCEEEeCcee-EEE-------hhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhcccccCC
Confidence            677789999988766 222       222334569999999999865444444432 33332111 11111112223468


Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC-C-CcEEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcE-
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGW-K-LDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV-  283 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~-~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v-  283 (306)
                      ++|+|||+|++|+|+|..+.+. + .+|++++|.+. .++.     ..+.+.+.+ ++||+++..+.+.++..  ++++ 
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-----~~eEle~Al-eeGVe~~~~~~p~~I~~--dG~l~  740 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-----WREEYEEAL-EDGVEFKELLNPESFDA--DGTLT  740 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-----cHHHHHHHH-HcCCEEEeCCceEEEEc--CCcEE
Confidence            9999999999999999998877 3 48999998763 3332     223344443 57999999998888863  3322 


Q ss_pred             ---------------EEEEeCCCCEEecCEEEEecCCC
Q 021871          284 ---------------AAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       284 ---------------~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                                     ..+.+.++.++++|.||+|+|++
T Consensus       741 ~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~  778 (1019)
T PRK09853        741 CRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ  778 (1019)
T ss_pred             EEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc
Confidence                           11233344579999999999974

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=2.1e-22  Score=165.63  Aligned_cols=241  Identities=20%  Similarity=0.307  Sum_probs=170.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-------CC------CCcc-------ccccccCC-CCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YE------RPAL-------TKGYLFPL-DKK  107 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~------~~~~-------~~~~~~~~-~~~  107 (306)
                      ...+|+++||||.+|+.+|++.++.|-   ++.++|-.-..+       +.      ....       ...+-++. ...
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GA---kv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~   94 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGA---KVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEG   94 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCc---eEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcccccc
Confidence            346899999999999999999999997   899998652111       00      0000       00011111 111


Q ss_pred             CCCCCCcccccCCCCCcCChh----HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCccCCCCC
Q 021871          108 PARLPGFHTCVGSGGERQTPE----WYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI  181 (306)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~~~~~~  181 (306)
                      .++|..++..++ .....+..    .+.+.++++..+ ...-+++.+-.+...++.  .+.++++++|+|..|.. |.  
T Consensus        95 ~fdW~~ik~krd-ayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~-Pn--  169 (478)
T KOG0405|consen   95 SFDWKVIKQKRD-AYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPII-PN--  169 (478)
T ss_pred             CCcHHHHHhhhh-HHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCC-CC--
Confidence            122221111110 00111222    233345666655 333344444467777774  47899999999999874 54  


Q ss_pred             CCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH
Q 021871          182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  261 (306)
Q Consensus       182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (306)
                         +||.++.   .+++.+++....+++++|+|+|++|+|+|.-++..+.+++++-|++.++.. +++.+.+.+.+.++.
T Consensus       170 ---IpG~E~g---idSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~~~  242 (478)
T KOG0405|consen  170 ---IPGAELG---IDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHLEG  242 (478)
T ss_pred             ---CCchhhc---cccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHhhh
Confidence               6776543   367777877788999999999999999999999999999999999999987 899999999999999


Q ss_pred             cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       262 ~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +||++++++.++++..++++.. .+.+..|....+|.++||+|.
T Consensus       243 ~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR  285 (478)
T KOG0405|consen  243 RGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGR  285 (478)
T ss_pred             cceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecC
Confidence            9999999999999998777755 466677755559999999996

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.88  E-value=7.4e-22  Score=166.79  Aligned_cols=229  Identities=21%  Similarity=0.383  Sum_probs=168.2

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCCh
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (306)
                      ..++++|||+|+||+|.++++.|....+   +|++|++++++.|. |.++.-...+.+.             ......+.
T Consensus        52 ~~kKk~vVVLGsGW~a~S~lk~ldts~Y---dV~vVSPRnyFlFT-PLLpS~~vGTve~-------------rSIvEPIr  114 (491)
T KOG2495|consen   52 GGKKKRVVVLGSGWGAISLLKKLDTSLY---DVTVVSPRNYFLFT-PLLPSTTVGTVEL-------------RSIVEPIR  114 (491)
T ss_pred             CCCCceEEEEcCchHHHHHHHhcccccc---ceEEeccccceEEe-eccCCccccceee-------------hhhhhhHH
Confidence            4567899999999999999999977776   99999999987665 2222211111110             01112233


Q ss_pred             hHHhhc--CeEEEeCCcEEEEeCCCCEEEcC----CC----cEEecCcEEEeeCCCCccCCCCCCCCCCCE----EEEcc
Q 021871          128 EWYKEK--GIEMIYQDPVTSIDIEKQTLITN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGV----HYIRD  193 (306)
Q Consensus       128 ~~~~~~--~v~~~~~~~v~~v~~~~~~v~~~----~g----~~~~~~~lila~G~~~~~~~~~~~~~~~g~----~~~~~  193 (306)
                      ....+.  ++.++ ..+...+|++.+.+.+.    ++    -.+.|||||+|+|+++..+.      +||+    +++++
T Consensus       115 ~i~r~k~~~~~y~-eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFg------ipGV~e~~~FLKE  187 (491)
T KOG2495|consen  115 AIARKKNGEVKYL-EAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFG------IPGVEENAHFLKE  187 (491)
T ss_pred             HHhhccCCCceEE-ecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCC------CCchhhchhhhhh
Confidence            333333  34554 55888899988866543    33    37899999999999998755      6665    35567


Q ss_pred             HHHHHHHHHhhh-----------------cCCeEEEEcCCHHHHHHHHHHHhC--------------CCcEEEEecCCcc
Q 021871          194 VADADALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHL  242 (306)
Q Consensus       194 ~~~~~~~~~~~~-----------------~~~~v~viG~g~~a~e~a~~l~~~--------------~~~v~~~~~~~~~  242 (306)
                      +++++.++..+.                 .-.+++|||||++|+|+|.+|+..              ..+||++...+.+
T Consensus       188 v~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i  267 (491)
T KOG2495|consen  188 VEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI  267 (491)
T ss_pred             hhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Confidence            778777654331                 233689999999999999999865              2478999999999


Q ss_pred             cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCC
Q 021871          243 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILLPYD  305 (306)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~  305 (306)
                      ++. ++..+.+..++.+.+.||++..++.|+.+++  ...  .+.+.+|  +.|++-.+|||||.
T Consensus       268 L~m-Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~--~~I--~~~~~~g~~~~iPYG~lVWatG~  327 (491)
T KOG2495|consen  268 LNM-FDKRLVEYAENQFVRDGIDLDTGTMVKKVTE--KTI--HAKTKDGEIEEIPYGLLVWATGN  327 (491)
T ss_pred             HHH-HHHHHHHHHHHHhhhccceeecccEEEeecC--cEE--EEEcCCCceeeecceEEEecCCC
Confidence            985 8999999999999999999999999999984  222  3455566  46999999999996

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.88  E-value=8.2e-21  Score=184.95  Aligned_cols=225  Identities=16%  Similarity=0.171  Sum_probs=151.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..+||+|||||||||+||.+|++.|+   +|+|+|+.+..+        |.++...   ...++...   .+....+...
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~---~V~liD~~~~~G--------G~~~~~~---~~~~g~~~---~~~~~~~~~~  224 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGA---RVILVDEQPEAG--------GSLLSEA---ETIDGKPA---ADWAAATVAE  224 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCCCC--------Ceeeccc---cccCCccH---HHHHHHHHHH
Confidence            35799999999999999999999998   999999986642        1111100   00111000   0000122233


Q ss_pred             Hhhc-CeEEEeCCcEEEEeCCCCEEEc-----------CC---C--cEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEc
Q 021871          130 YKEK-GIEMIYQDPVTSIDIEKQTLIT-----------NS---G--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR  192 (306)
Q Consensus       130 ~~~~-~v~~~~~~~v~~v~~~~~~v~~-----------~~---g--~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~  192 (306)
                      +.+. +++++.+++|..+.........           .+   .  ..+.|+.||+|||+.++ ++++++.+.+++....
T Consensus       225 l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r-~~pipG~~~pgV~~~~  303 (985)
T TIGR01372       225 LTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER-PLVFANNDRPGVMLAG  303 (985)
T ss_pred             HhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc-CCCCCCCCCCCcEEch
Confidence            3334 4888888888877543221000           00   1  15899999999999987 4667887788877643


Q ss_pred             cHHHHHHHHH--hhhcCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcC
Q 021871          193 DVADADALIS--SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  269 (306)
Q Consensus       193 ~~~~~~~~~~--~~~~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~  269 (306)
                      ..   +.+.+  ....+++++|+|+|.+++++|..|.+.+. .|+++.+.+.+         ...+.+.+++.||+++++
T Consensus       304 ~~---~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~  371 (985)
T TIGR01372       304 AA---RTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTG  371 (985)
T ss_pred             HH---HHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcC
Confidence            22   22222  12357899999999999999999999995 57788765432         224567788999999999


Q ss_pred             ceEEEEEeCCCCcEEEEEeC----CCCEEecCEEEEecCCC
Q 021871          270 ASIKNLEAGSDGRVAAVKLE----DGSTIDADTVILLPYDQ  306 (306)
Q Consensus       270 ~~v~~i~~~~~~~v~~v~~~----~G~~i~~d~vv~a~g~~  306 (306)
                      +.|+++..  ++.+.+|++.    +++++++|.|++++|..
T Consensus       372 ~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~  410 (985)
T TIGR01372       372 HVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWT  410 (985)
T ss_pred             CeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcC
Confidence            99999983  4444455543    45679999999999863

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.88  E-value=1.2e-21  Score=163.09  Aligned_cols=244  Identities=18%  Similarity=0.302  Sum_probs=165.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCC---------CCccccccccCCC-------------CC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---------RPALTKGYLFPLD-------------KK  107 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---------~~~~~~~~~~~~~-------------~~  107 (306)
                      ..+||+|||+||+|..||.+.++.|+   +...+|++...+-.         ...++.++++...             ..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGl---kTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~  114 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGL---KTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV  114 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcc---eeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence            46999999999999999999999999   88889997664310         0111122221100             11


Q ss_pred             CCCCCCcccccC---CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCccCCCCCC
Q 021871          108 PARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG  182 (306)
Q Consensus       108 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~~~~~~~  182 (306)
                      ..+++.+.....   ..+...+...+++.++.+..+.. .-.++..-.+...||.  .+.++++|+|||+.-   +++||
T Consensus       115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g-sf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV---~~~PG  190 (506)
T KOG1335|consen  115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG-SFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEV---TPFPG  190 (506)
T ss_pred             ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE-eecCCceEEEeccCCCceEEeeeeEEEEeCCcc---CCCCC
Confidence            111111110000   11112233335556666654421 1123322233334443  789999999999873   33444


Q ss_pred             CCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHc
Q 021871          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  262 (306)
Q Consensus       183 ~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (306)
                      ..+++--    +.+++...+...-++++.|+|+|.+|+|++.-..+.|.+||++.-.+.+++. .++++...+++.|+.+
T Consensus       191 I~IDekk----IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQ  265 (506)
T KOG1335|consen  191 ITIDEKK----IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQ  265 (506)
T ss_pred             eEecCce----EEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhc
Confidence            3333322    2244444455557999999999999999999999999999999999999997 8999999999999999


Q ss_pred             CCEEEcCceEEEEEeCCCCcEEEEEeCCC-----CEEecCEEEEecCCC
Q 021871          263 GVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTVILLPYDQ  306 (306)
Q Consensus       263 gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-----~~i~~d~vv~a~g~~  306 (306)
                      |+++.++++|..++.++||.+ .+++++.     ++++||.+++|+|.+
T Consensus       266 gikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRr  313 (506)
T KOG1335|consen  266 GIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRR  313 (506)
T ss_pred             CceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCc
Confidence            999999999999998777754 4666443     379999999999964

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.88  E-value=1e-20  Score=165.50  Aligned_cols=228  Identities=22%  Similarity=0.218  Sum_probs=144.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||||++|+++|..|++.|+   +|+++|+.+..+.        .+... ......+ .      +........
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg--------~~~~~-~~~~~~~-~------~~~~~~~~~   77 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGY---EVHVYDKLPEPGG--------LMLFG-IPEFRIP-I------ERVREGVKE   77 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCc--------eeeec-CcccccC-H------HHHHHHHHH
Confidence            35799999999999999999999998   9999999766421        11100 0000000 0      001123344


Q ss_pred             HhhcCeEEEeCCcEEEEeC----CCCE-----EEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHH
Q 021871          130 YKEKGIEMIYQDPVTSIDI----EKQT-----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL  200 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~----~~~~-----v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  200 (306)
                      +.+.+++++.++.+..++.    ....     +..+ +..++||+||+|||+.....|++|+.+.+++....+.  ...+
T Consensus        78 l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~--~~~~  154 (352)
T PRK12770         78 LEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEY--LFRI  154 (352)
T ss_pred             HHhCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHH--HHHh
Confidence            5566899988877654432    0111     1111 1236899999999995333466666555555432111  1111


Q ss_pred             HH---------h--hhcCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEc
Q 021871          201 IS---------S--LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  268 (306)
Q Consensus       201 ~~---------~--~~~~~~v~viG~g~~a~e~a~~l~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~  268 (306)
                      ..         .  ...+++++|+|+|.+++|+|..+...+.+ |+++.+.+..... .    .....+.++++||++++
T Consensus       155 ~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~-~----~~~~~~~l~~~gi~i~~  229 (352)
T PRK12770        155 RAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP-A----GKYEIERLIARGVEFLE  229 (352)
T ss_pred             hhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC-C----CHHHHHHHHHcCCEEee
Confidence            10         0  11258999999999999999999988886 9999887543221 1    12344568899999999


Q ss_pred             CceEEEEEeCCCCcEEEEEe--------------------CCCCEEecCEEEEecCCC
Q 021871          269 GASIKNLEAGSDGRVAAVKL--------------------EDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       269 ~~~v~~i~~~~~~~v~~v~~--------------------~~G~~i~~d~vv~a~g~~  306 (306)
                      ++.+++++. + +.+..|++                    .+++.+++|.+|+|+|.+
T Consensus       230 ~~~v~~i~~-~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~  285 (352)
T PRK12770        230 LVTPVRIIG-E-GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI  285 (352)
T ss_pred             ccCceeeec-C-CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence            999999984 2 33434432                    123479999999999863

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.88  E-value=2.2e-21  Score=188.08  Aligned_cols=225  Identities=18%  Similarity=0.222  Sum_probs=149.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||||||||++|.+|+++|+   +|+|+|+.+..+        |.+.. ..+...++       .+......+.
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~---~VtV~E~~~~~G--------G~l~~-gip~~rl~-------~e~~~~~~~~  489 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGV---DVTVYEALHVVG--------GVLQY-GIPSFRLP-------RDIIDREVQR  489 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCc--------ceeec-cCCccCCC-------HHHHHHHHHH
Confidence            45799999999999999999999999   999999876542        11110 00111111       0112345566


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCc-EEecCcEEEeeCCC-CccCCCCCCCCCCCEEEEccHHHHHHHH------
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALI------  201 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~-~~~~~~lila~G~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~------  201 (306)
                      +++.|++++.+..+ ..     .+.+.+.. ...||.||+|||+. ++ .+++||.+.+++....++.....+.      
T Consensus       490 l~~~Gv~~~~~~~v-g~-----~~~~~~l~~~~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~  562 (1006)
T PRK12775        490 LVDIGVKIETNKVI-GK-----TFTVPQLMNDKGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLMGGDKFP  562 (1006)
T ss_pred             HHHCCCEEEeCCcc-CC-----ccCHHHHhhccCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhcCccccc
Confidence            78889999988543 11     12211111 24699999999996 45 4667777777776554333322211      


Q ss_pred             ---HhhhcCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcc-cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEE
Q 021871          202 ---SSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (306)
Q Consensus       202 ---~~~~~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  276 (306)
                         .....+++|+|||+|++|+|.|..+.+.|. .|++++|.... ++.  .   .. -.+.+++.||++++++.+.++.
T Consensus       563 ~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a--~---~~-e~~~a~eeGI~~~~~~~p~~i~  636 (1006)
T PRK12775        563 FLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPA--R---IE-EIRHAKEEGIDFFFLHSPVEIY  636 (1006)
T ss_pred             cccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCC--C---HH-HHHHHHhCCCEEEecCCcEEEE
Confidence               012357999999999999999999998876 47888775432 121  1   11 1245678999999999999997


Q ss_pred             eCCCCcEEEEEeC-----------------CCC--EEecCEEEEecCCC
Q 021871          277 AGSDGRVAAVKLE-----------------DGS--TIDADTVILLPYDQ  306 (306)
Q Consensus       277 ~~~~~~v~~v~~~-----------------~G~--~i~~d~vv~a~g~~  306 (306)
                      .+++|++.+|++.                 .|+  ++++|.||+|+|+.
T Consensus       637 ~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~  685 (1006)
T PRK12775        637 VDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTK  685 (1006)
T ss_pred             eCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcC
Confidence            5567777666542                 122  59999999999963

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.87  E-value=1.5e-20  Score=168.34  Aligned_cols=232  Identities=18%  Similarity=0.189  Sum_probs=146.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHH--cCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVE--HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~--~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (306)
                      ..+++|+|||||||||+||..|++  .|+   +|+|+|+.+..        .|++.....  .+.+..+.+     ...+
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~---~Vtv~E~~p~p--------gGlvr~gva--P~~~~~k~v-----~~~~   85 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA---RVDIIERLPTP--------FGLVRSGVA--PDHPETKNV-----TNQF   85 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCC---eEEEEecCCCC--------cceEeeccC--CCcchhHHH-----HHHH
Confidence            346799999999999999999997  566   99999998753        122211000  011111111     1234


Q ss_pred             hhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHH-------HHH
Q 021871          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADA  199 (306)
Q Consensus       127 ~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~  199 (306)
                      ..++...+++++.+..+      +..+.+++.. ..||.||+|+|+.+...+.+|+.+.+++....++..       ...
T Consensus        86 ~~~~~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~  158 (491)
T PLN02852         86 SRVATDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVH  158 (491)
T ss_pred             HHHHHHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhh
Confidence            45566678888776444      1223333322 479999999999875456678877888876544321       111


Q ss_pred             HHHhhhcCCeEEEEcCCHHHHHHHHHHHhC--------------------C-CcEEEEecCCcccccccCHH--------
Q 021871          200 LISSLEKAKKVVVVGGGYIGMEVAAAAVGW--------------------K-LDTTIIFPENHLLQRLFTPS--------  250 (306)
Q Consensus       200 ~~~~~~~~~~v~viG~g~~a~e~a~~l~~~--------------------~-~~v~~~~~~~~~~~~~~~~~--------  250 (306)
                      +......+++++|||+|++|+|+|..|.+.                    + .+|++++|....-..+-..+        
T Consensus       159 ~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~  238 (491)
T PLN02852        159 LPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLK  238 (491)
T ss_pred             hhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccC
Confidence            111223578999999999999999998764                    3 46999999864221111111        


Q ss_pred             -----------------------------HHHHHHHHHHH---------cCCEEEcCceEEEEEeC--CCCcEEEEEeC-
Q 021871          251 -----------------------------LAQRYEQLYQQ---------NGVKFVKGASIKNLEAG--SDGRVAAVKLE-  289 (306)
Q Consensus       251 -----------------------------~~~~~~~~~~~---------~gv~i~~~~~v~~i~~~--~~~~v~~v~~~-  289 (306)
                                                   ..+.+.+...+         +++.+++....++|..+  +++++.++++. 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~  318 (491)
T PLN02852        239 NVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLER  318 (491)
T ss_pred             CCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEE
Confidence                                         11222222222         57999998888888742  23577677663 


Q ss_pred             ----------------CCC--EEecCEEEEecCC
Q 021871          290 ----------------DGS--TIDADTVILLPYD  305 (306)
Q Consensus       290 ----------------~G~--~i~~d~vv~a~g~  305 (306)
                                      +|+  .+++|.||.|.|+
T Consensus       319 ~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~  352 (491)
T PLN02852        319 TVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGY  352 (491)
T ss_pred             eecCCCcccCCcccCCCCCEEEEECCEEEEeecC
Confidence                            232  5899999999997

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.87  E-value=1.7e-19  Score=161.57  Aligned_cols=233  Identities=31%  Similarity=0.407  Sum_probs=183.8

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhhc
Q 021871           54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK  133 (306)
Q Consensus        54 vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (306)
                      ++|||+|.+|+++|..|.+.. ++.+++++..+....|..+............ ..++            .....+..+.
T Consensus         1 ivivG~g~aG~~aa~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~~   66 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLL-LAAEITLIGREPKYSYYRCPLSLYVGGGIAS-LEDL------------RYPPRFNRAT   66 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcC-CCCCEEEEeCCCCCCCCCCccchHHhcccCC-HHHh------------cccchhHHhh
Confidence            589999999999999998876 4678988888877766655544322221111 1111            1111122467


Q ss_pred             CeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEE
Q 021871          134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV  213 (306)
Q Consensus       134 ~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~vi  213 (306)
                      ++++..++.|.+++...+.+.+.++ .+.||++++|+|..+...+   +...++....+...+...+.......++++|+
T Consensus        67 ~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vv  142 (415)
T COG0446          67 GIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVV  142 (415)
T ss_pred             CCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEE
Confidence            8999999999999999999999988 8999999999999988654   44577788887777777776655556899999


Q ss_pred             cCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE--EEeCCC
Q 021871          214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA--VKLEDG  291 (306)
Q Consensus       214 G~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~--v~~~~G  291 (306)
                      |+|..++++|..+.+.|.+|+++...+++++..+.+.+.+.+.+.++++||++++++.+..|+.. .+....  +...++
T Consensus       143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~-~~~~~~~~~~~~~~  221 (415)
T COG0446         143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGK-GNTLVVERVVGIDG  221 (415)
T ss_pred             CCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcc-cCcceeeEEEEeCC
Confidence            99999999999999999999999999999886322889999999999999999999999999963 333222  577888


Q ss_pred             CEEecCEEEEecCC
Q 021871          292 STIDADTVILLPYD  305 (306)
Q Consensus       292 ~~i~~d~vv~a~g~  305 (306)
                      ..+++|.+++++|.
T Consensus       222 ~~~~~d~~~~~~g~  235 (415)
T COG0446         222 EEIKADLVIIGPGE  235 (415)
T ss_pred             cEEEeeEEEEeecc
Confidence            89999999999985

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.86  E-value=6.8e-21  Score=178.25  Aligned_cols=225  Identities=25%  Similarity=0.317  Sum_probs=143.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...++|+|||||++||++|+.|++.|+   +|+|+|+.+..+        |.+.. ..+...++.  .     .......
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~---~Vtv~e~~~~~G--------G~l~~-gip~~~~~~--~-----~~~~~~~  251 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGH---DVTIFDANEQAG--------GMMRY-GIPRFRLPE--S-----VIDADIA  251 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCC--------ceeee-cCCCCCCCH--H-----HHHHHHH
Confidence            345799999999999999999999998   999999886642        11110 000111110  0     0122345


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCC
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  208 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  208 (306)
                      .+.+.|+++++++.+ ..+     +.+++. ...||.|++|+|+.+...+.+|+.+.+++....++............++
T Consensus       252 ~l~~~Gv~i~~~~~v-~~d-----v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk  324 (652)
T PRK12814        252 PLRAMGAEFRFNTVF-GRD-----ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGK  324 (652)
T ss_pred             HHHHcCCEEEeCCcc-cCc-----cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCC
Confidence            567789998887643 211     111111 2359999999999865445667666666543221211111111234689


Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcE--E
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV--A  284 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v--~  284 (306)
                      +|+|||+|++|+|+|..+.+.+. +|+++++... .++.  .+   ..+.+. .+.||++++++.+.+|... ++.+  .
T Consensus       325 ~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa--~~---~ei~~a-~~eGV~i~~~~~~~~i~~~-~~~~~v~  397 (652)
T PRK12814        325 KVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA--NR---AEIEEA-LAEGVSLRELAAPVSIERS-EGGLELT  397 (652)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CH---HHHHHH-HHcCCcEEeccCcEEEEec-CCeEEEE
Confidence            99999999999999999998875 6999998764 3432  11   223333 4579999999999998753 3332  1


Q ss_pred             EEEeC---------------CCC--EEecCEEEEecCCC
Q 021871          285 AVKLE---------------DGS--TIDADTVILLPYDQ  306 (306)
Q Consensus       285 ~v~~~---------------~G~--~i~~d~vv~a~g~~  306 (306)
                      .+.+.               +|+  .+++|.||+|+|+.
T Consensus       398 ~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~  436 (652)
T PRK12814        398 AIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ  436 (652)
T ss_pred             EEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence            12111               232  58999999999973

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.86  E-value=1.1e-20  Score=171.20  Aligned_cols=231  Identities=24%  Similarity=0.275  Sum_probs=146.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...++|+|||||++||++|..|++.|+   +|+|+|+.+..+        |.+..      .+|.+...  ........+
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~---~V~vie~~~~~G--------G~l~~------gip~~~~~--~~~~~~~~~  201 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGH---KVTVFERADRIG--------GLLRY------GIPDFKLE--KEVIDRRIE  201 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC---cEEEEecCCCCC--------ceeee------cCCcccCC--HHHHHHHHH
Confidence            345799999999999999999999998   999999986542        11110      01111000  000123345


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHH--HHHH----
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS----  202 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~----  202 (306)
                      ++.+.++++++++.+. .+...      +.....||.+++|+|+.....+.+++.+.+++.+..++....  .+..    
T Consensus       202 ~~~~~gv~~~~~~~v~-~~~~~------~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~  274 (471)
T PRK12810        202 LMEAEGIEFRTNVEVG-KDITA------EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETE  274 (471)
T ss_pred             HHHhCCcEEEeCCEEC-CcCCH------HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhcccccc
Confidence            6778899998886542 11110      011257999999999984334556776667776542222111  1111    


Q ss_pred             --hhhcCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcccccccC----HHHHH-HHHHHHHHcCCEEEcCceEEE
Q 021871          203 --SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFT----PSLAQ-RYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       203 --~~~~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~gv~i~~~~~v~~  274 (306)
                        ....+++|+|||+|++|+|+|..+...+. +|++..+.+........    +.+.. ...+.+++.||++++++.+++
T Consensus       275 ~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~  354 (471)
T PRK12810        275 PFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKE  354 (471)
T ss_pred             ccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceE
Confidence              12357899999999999999998888764 78866554432221000    00111 134557788999999999999


Q ss_pred             EEeCCCCcEEEEEeC-----CC---------CEEecCEEEEecCCC
Q 021871          275 LEAGSDGRVAAVKLE-----DG---------STIDADTVILLPYDQ  306 (306)
Q Consensus       275 i~~~~~~~v~~v~~~-----~G---------~~i~~d~vv~a~g~~  306 (306)
                      |.. +++++.+|+..     +|         .++++|.||+|+|++
T Consensus       355 i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~  399 (471)
T PRK12810        355 FEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFT  399 (471)
T ss_pred             EEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcC
Confidence            984 56777665532     22         469999999999963

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.86  E-value=2.4e-20  Score=168.40  Aligned_cols=225  Identities=22%  Similarity=0.272  Sum_probs=150.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +.++|+|||||++||++|..|+++|+   +|+++|+.+..+        |++.. ..+...++       ........++
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~---~V~i~e~~~~~g--------G~l~~-gip~~~~~-------~~~~~~~~~~  200 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV---QVVVFDRHPEIG--------GLLTF-GIPSFKLD-------KAVLSRRREI  200 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCC--------ceeee-cCccccCC-------HHHHHHHHHH
Confidence            45799999999999999999999998   899999886532        11110 00011111       0111234566


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHH--HHHHH-----
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS-----  202 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~-----  202 (306)
                      +++.|++++.++.+..      .+.+++ ....||.|++|+|+.+...+++++.+.+++....++...  ..+..     
T Consensus       201 ~~~~Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~  273 (467)
T TIGR01318       201 FTAMGIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESP  273 (467)
T ss_pred             HHHCCCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccc
Confidence            7889999998876521      111111 124799999999998765556777777887654322211  11100     


Q ss_pred             ----hhhcCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcc-cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEE
Q 021871          203 ----SLEKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (306)
Q Consensus       203 ----~~~~~~~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  276 (306)
                          ....+++++|+|+|.++++.|..+...+ .+|++++|.+.. ++.  .+.    ..+.+++.||++++++.++++.
T Consensus       274 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~--~~~----e~~~~~~~GV~~~~~~~~~~i~  347 (467)
T TIGR01318       274 EEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG--SRR----EVANAREEGVEFLFNVQPVYIE  347 (467)
T ss_pred             cccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC--CHH----HHHHHHhcCCEEEecCCcEEEE
Confidence                0124689999999999999999999988 479999987652 332  221    2244678899999999999997


Q ss_pred             eCCCCcEEEEEeC---------C---------C--CEEecCEEEEecCCC
Q 021871          277 AGSDGRVAAVKLE---------D---------G--STIDADTVILLPYDQ  306 (306)
Q Consensus       277 ~~~~~~v~~v~~~---------~---------G--~~i~~d~vv~a~g~~  306 (306)
                      .++++++.+|++.         +         |  ..+++|.||+|+|++
T Consensus       348 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~  397 (467)
T TIGR01318       348 CDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQ  397 (467)
T ss_pred             ECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCC
Confidence            5456666555441         1         2  269999999999963

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=4.7e-21  Score=148.56  Aligned_cols=236  Identities=19%  Similarity=0.245  Sum_probs=166.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCChh
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  128 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  128 (306)
                      .+.+|+|||+||++..+|.++++..+   +-+++|-.-.     .....|...+......++|+|++ +.+.++...+..
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaarael---kPllfEG~~~-----~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrk   78 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARAEL---KPLLFEGMMA-----NGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRK   78 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhccc---CceEEeeeec-----cCcCCCceeeeeeccccCCCCCcccccHHHHHHHHH
Confidence            34589999999999999999999988   7778774322     33333333344566778899985 446677777888


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHH--hh
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS--SL  204 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~  204 (306)
                      ..+++|.+++.. .|.+++....  .+.+ +.+.+.+|.+|+|||...+++. +|+. .++.++-+.+..|..+..  .+
T Consensus        79 qs~r~Gt~i~tE-tVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~-~pg~-ge~~fWqrGiSaCAVCDGaapi  154 (322)
T KOG0404|consen   79 QSERFGTEIITE-TVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH-LPGE-GEGEFWQRGISACAVCDGAAPI  154 (322)
T ss_pred             HHHhhcceeeee-ehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee-cCCC-CcchHHhcccchhhcccCcchh
Confidence            888899998865 7888887654  4554 4557999999999999887643 3332 112122233334433332  34


Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHH-HHHcCCEEEcCceEEEEEeCCCCcE
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL-YQQNGVKFVKGASIKNLEAGSDGRV  283 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gv~i~~~~~v~~i~~~~~~~v  283 (306)
                      ..++..+|||+|.+++|-|.+|.+++.+|+++.|.+.+..+       ..++++ .+..+|++++++.+.+..- +.+.+
T Consensus       155 frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs-------~~Mq~ra~~npnI~v~~nt~~~ea~g-d~~~l  226 (322)
T KOG0404|consen  155 FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS-------KIMQQRAEKNPNIEVLYNTVAVEALG-DGKLL  226 (322)
T ss_pred             hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH-------HHHHHHHhcCCCeEEEechhhhhhcc-Ccccc
Confidence            57889999999999999999999999999999999877653       233344 4556999999998887773 22332


Q ss_pred             E-----EEEeCCCCEEecCEEEEecCC
Q 021871          284 A-----AVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       284 ~-----~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .     .+.+.+-..++++.++++.|.
T Consensus       227 ~~l~ikn~~tge~~dl~v~GlFf~IGH  253 (322)
T KOG0404|consen  227 NGLRIKNVKTGEETDLPVSGLFFAIGH  253 (322)
T ss_pred             cceEEEecccCcccccccceeEEEecC
Confidence            2     233333346999999999885

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.86  E-value=5e-20  Score=173.04  Aligned_cols=225  Identities=20%  Similarity=0.252  Sum_probs=148.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||||++||++|..|++.|+   +|+|+|+.+..+        |.+.. ..+...++       .........+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~---~V~V~E~~~~~G--------G~l~~-gip~~~l~-------~~~~~~~~~~  386 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGV---AVTVYDRHPEIG--------GLLTF-GIPAFKLD-------KSLLARRREI  386 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC--------ceeee-cCCCccCC-------HHHHHHHHHH
Confidence            46799999999999999999999998   899999876532        22111 00111111       0011223456


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHH--HHHHHHH-----
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALIS-----  202 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~-----  202 (306)
                      +++.|++++.++.+.. +     +.+.+. ...||.|++|+|+.....+.+++.+.+|+....++.  .......     
T Consensus       387 ~~~~Gv~~~~~~~v~~-~-----i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~  459 (654)
T PRK12769        387 FSAMGIEFELNCEVGK-D-----ISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELP  459 (654)
T ss_pred             HHHCCeEEECCCEeCC-c-----CCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCcccc
Confidence            7778999988876521 1     111111 247999999999876544566776677776432111  1111100     


Q ss_pred             ----hhhcCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcc-cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEE
Q 021871          203 ----SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (306)
Q Consensus       203 ----~~~~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  276 (306)
                          ....+++|+|||+|++|+|+|..+.+.+. +|+++++.+.. ++.  .+    ...+.+++.||++++++.++++.
T Consensus       460 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~--~~----~e~~~~~~~Gv~~~~~~~~~~i~  533 (654)
T PRK12769        460 EEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG--SK----KEVKNAREEGANFEFNVQPVALE  533 (654)
T ss_pred             ccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC--CH----HHHHHHHHcCCeEEeccCcEEEE
Confidence                01246899999999999999998888875 79999887553 332  22    22345788999999999999997


Q ss_pred             eCCCCcEEEEEeC---------CC---------C--EEecCEEEEecCCC
Q 021871          277 AGSDGRVAAVKLE---------DG---------S--TIDADTVILLPYDQ  306 (306)
Q Consensus       277 ~~~~~~v~~v~~~---------~G---------~--~i~~d~vv~a~g~~  306 (306)
                      .++++++.+|++.         +|         +  ++++|.||+|+|+.
T Consensus       534 ~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~  583 (654)
T PRK12769        534 LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFN  583 (654)
T ss_pred             ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCC
Confidence            5456777666541         22         2  59999999999963

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.86  E-value=1.9e-20  Score=178.74  Aligned_cols=218  Identities=22%  Similarity=0.259  Sum_probs=134.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||||||||+||++|+++|+   +|+|+|+.+..+        |.+... .+...++.       +.......+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~---~VTV~Ek~~~lG--------G~l~~~-IP~~rlp~-------e~l~~~ie~  596 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGH---PVTVFEKKEKPG--------GVVKNI-IPEFRISA-------ESIQKDIEL  596 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC---eEEEEecccccC--------ceeeec-ccccCCCH-------HHHHHHHHH
Confidence            45799999999999999999999998   999999986532        111100 00011110       001233355


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHH---hhhc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS---SLEK  206 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~  206 (306)
                      +.+.|++++++....        +.+++.....||+|++|+|+.+...+.+++.. +++.  ..+.....+..   ....
T Consensus       597 l~~~GVe~~~g~~~d--------~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~--~avefL~~~~~~~~~~~~  665 (1012)
T TIGR03315       597 VKFHGVEFKYGCSPD--------LTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVL--KSLEFLRAFKEGPTINPL  665 (1012)
T ss_pred             HHhcCcEEEEecccc--------eEhhhhhcccccEEEECCCCCCCCCCCcCCCC-ccee--eHHHHHHHhhcccccccc
Confidence            667889888763210        12222234579999999999865444444421 2222  11111111111   1245


Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhC-C-CcEEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGW-K-LDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  283 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~-~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v  283 (306)
                      +++|+|||+|++|+|+|..+.+. + .+|++++|... .++.     ..+.+.+.+ +.||+++.++.+..++  ++ .+
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-----~~eEl~~al-eeGVe~~~~~~p~~I~--~g-~l  736 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-----SREELEEAL-EDGVDFKELLSPESFE--DG-TL  736 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-----CHHHHHHHH-HcCCEEEeCCceEEEE--CC-eE
Confidence            89999999999999999998875 5 47999998763 3332     123343433 5799999988888876  22 21


Q ss_pred             EEE--------------EeCCCC--EEecCEEEEecCCC
Q 021871          284 AAV--------------KLEDGS--TIDADTVILLPYDQ  306 (306)
Q Consensus       284 ~~v--------------~~~~G~--~i~~d~vv~a~g~~  306 (306)
                      ...              ...+|+  ++++|.||+|+|+.
T Consensus       737 ~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~  775 (1012)
T TIGR03315       737 TCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ  775 (1012)
T ss_pred             EEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc
Confidence            111              112243  68999999999974

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.86  E-value=3.6e-20  Score=155.92  Aligned_cols=253  Identities=23%  Similarity=0.387  Sum_probs=197.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCC--cCCh
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGE--RQTP  127 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  127 (306)
                      +....+|||+|-+..+++....... ....|.+|..++...|.+|.+..-.|+..+.....-..|+-+.+.+..  ....
T Consensus       177 ~hvp~liigggtaAfaa~rai~s~d-a~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd  255 (659)
T KOG1346|consen  177 KHVPYLIIGGGTAAFAAFRAIKSND-ATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD  255 (659)
T ss_pred             ccCceeEEcCCchhhhcccccccCC-CCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC
Confidence            3567999999999888877776553 577999999999999999999888887666554443344433332211  1112


Q ss_pred             hHH---------hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCC---CCCCEEEEccHH
Q 021871          128 EWY---------KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG---YLPGVHYIRDVA  195 (306)
Q Consensus       128 ~~~---------~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~---~~~g~~~~~~~~  195 (306)
                      .++         ..-|+-+..+-+|..++...+.|+++||.+|.||.++||||..|..++.++..   -...+-+|+...
T Consensus       256 ~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~  335 (659)
T KOG1346|consen  256 GFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPA  335 (659)
T ss_pred             cceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecch
Confidence            221         11357788898999999999999999999999999999999999887765432   134456777677


Q ss_pred             HHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCce
Q 021871          196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS  271 (306)
Q Consensus       196 ~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  271 (306)
                      +.+.+.+....-++|.|||+|..|-|+|..|.+.    +.+|+-+......+...++..+..+-.+.+++.||.++.++.
T Consensus       336 DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~  415 (659)
T KOG1346|consen  336 DFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAK  415 (659)
T ss_pred             HHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchh
Confidence            7777777666678999999999999999999764    567888878777777778888888899999999999999999


Q ss_pred             EEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          272 IKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       272 v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      |.++.....+.  .+++.||.++..|.||.|+|-
T Consensus       416 v~sv~~~~~nl--~lkL~dG~~l~tD~vVvavG~  447 (659)
T KOG1346|consen  416 VESVRKCCKNL--VLKLSDGSELRTDLVVVAVGE  447 (659)
T ss_pred             hhhhhhhccce--EEEecCCCeeeeeeEEEEecC
Confidence            99998643333  489999999999999999984

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.84  E-value=6.6e-20  Score=158.27  Aligned_cols=248  Identities=20%  Similarity=0.214  Sum_probs=132.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc------cCCCCCCCCCC--CcccccC---
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL------FPLDKKPARLP--GFHTCVG---  119 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~---  119 (306)
                      .+|+++||.||++|+.|..|.+.+  ..+++++|+.+.+.|+...+..+.-      .+.......-.  .|.....   
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~   79 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG   79 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence            479999999999999999999987  2399999999988776543333221      11100000000  0100000   


Q ss_pred             -----------CCCCc----CChhHHhhcCeEEEeCCcEEEEeCCC------CEEEcC----CCcEEecCcEEEeeCCCC
Q 021871          120 -----------SGGER----QTPEWYKEKGIEMIYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGCTA  174 (306)
Q Consensus       120 -----------~~~~~----~~~~~~~~~~v~~~~~~~v~~v~~~~------~~v~~~----~g~~~~~~~lila~G~~~  174 (306)
                                 .....    ++....++.+-.+.++.+|.+|....      ..|.+.    ++..+.+++||+|+|..|
T Consensus        80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P  159 (341)
T PF13434_consen   80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP  159 (341)
T ss_dssp             -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred             ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence                       00001    11111222343367788999997643      356662    345899999999999887


Q ss_pred             ccCCCCC-CCC-CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCccccc-----
Q 021871          175 SRFPEKI-GGY-LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR-----  245 (306)
Q Consensus       175 ~~~~~~~-~~~-~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~--~v~~~~~~~~~~~~-----  245 (306)
                      .. |... ... -+.+.+..++....   +.....++|+|||+|.+|.|++..|.+.+.  +|+++.|++.+.+.     
T Consensus       160 ~i-P~~~~~~~~~~~v~Hss~~~~~~---~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f  235 (341)
T PF13434_consen  160 RI-PEWFQDLPGSPRVFHSSEYLSRI---DQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPF  235 (341)
T ss_dssp             ----GGGGGGTT-TTEEEGGGHHHHH---T-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CC
T ss_pred             CC-CcchhhcCCCCCEEEehHhhhcc---ccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccc
Confidence            74 4332 222 25566544333221   114567899999999999999999998764  79999999876531     


Q ss_pred             ---cc-------------------------------CHHHHHHHHH-----HH-HHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871          246 ---LF-------------------------------TPSLAQRYEQ-----LY-QQNGVKFVKGASIKNLEAGSDGRVAA  285 (306)
Q Consensus       246 ---~~-------------------------------~~~~~~~~~~-----~~-~~~gv~i~~~~~v~~i~~~~~~~v~~  285 (306)
                         .+                               ++++.+.+.+     .+ .+..++++.+++|++++..+++.+ .
T Consensus       236 ~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~  314 (341)
T PF13434_consen  236 VNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-R  314 (341)
T ss_dssp             HHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-E
T ss_pred             hhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-E
Confidence               12                               2223322222     22 223578999999999998665554 4


Q ss_pred             EEeCC---C--CEEecCEEEEecCC
Q 021871          286 VKLED---G--STIDADTVILLPYD  305 (306)
Q Consensus       286 v~~~~---G--~~i~~d~vv~a~g~  305 (306)
                      +.+.+   |  ..+++|.||+|||.
T Consensus       315 l~~~~~~~~~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  315 LTLRHRQTGEEETLEVDAVILATGY  339 (341)
T ss_dssp             EEEEETTT--EEEEEESEEEE---E
T ss_pred             EEEEECCCCCeEEEecCEEEEcCCc
Confidence            55554   2  36899999999995

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.84  E-value=1e-20  Score=152.94  Aligned_cols=179  Identities=23%  Similarity=0.328  Sum_probs=102.5

Q ss_pred             EEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--CCC----CccccccccCCCCCCCCCCCc--c----------c
Q 021871           55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER----PALTKGYLFPLDKKPARLPGF--H----------T  116 (306)
Q Consensus        55 vIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~--~----------~  116 (306)
                      +|||||++||++|.+|.++|.+  +|+|+|+++..+  |..    ........+.......++..+  .          .
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~--~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGID--PVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF   78 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred             CEECcCHHHHHHHHHHHhCCCC--cEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence            7999999999999999999982  399999987654  111    011000000000000011000  0          0


Q ss_pred             ccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCC--CCccCCCCCC-CCCCCEEEE
Q 021871          117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHYI  191 (306)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~--~~~~~~~~~~-~~~~g~~~~  191 (306)
                      ....+...++..+.++++++++++++|.++..++  +.+.+.++..+++++||+|+|.  .|. .|.+++ ... ...+.
T Consensus        79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h~  156 (203)
T PF13738_consen   79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIHS  156 (203)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEEG
T ss_pred             CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEeh
Confidence            1112223466666777888899999999998754  5888888888999999999996  343 455555 222 22222


Q ss_pred             ccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          192 RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      .+..+     .....+++|+|||+|.+|+|++..|.+.+.+|+++.|++.+
T Consensus       157 ~~~~~-----~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~  202 (203)
T PF13738_consen  157 ADWRD-----PEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW  202 (203)
T ss_dssp             GG-ST-----TGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred             hhcCC-----hhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence            11111     12335799999999999999999999999999999998754

...

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.83  E-value=3.1e-19  Score=167.05  Aligned_cols=225  Identities=20%  Similarity=0.280  Sum_probs=148.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||||++||++|+.|++.|+   +|+|+|+.+..+        |.+. ...+...++       ........++
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~---~Vtv~e~~~~~G--------G~l~-~gip~~~l~-------~~~~~~~~~~  369 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV---QVDVFDRHPEIG--------GMLT-FGIPPFKLD-------KTVLSQRREI  369 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC---cEEEEeCCCCCC--------Ceee-ccCCcccCC-------HHHHHHHHHH
Confidence            46899999999999999999999998   899999987542        1211 011111111       0001233466


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHH--HHHHH-----
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS-----  202 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~-----  202 (306)
                      +.+.|+++++++.+..      .+.+.+ ....||.+++|+|+.....+.+++.+.+|+....++...  ..+..     
T Consensus       370 ~~~~Gv~~~~~~~v~~------~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~  442 (639)
T PRK12809        370 FTAMGIDFHLNCEIGR------DITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESE  442 (639)
T ss_pred             HHHCCeEEEcCCccCC------cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCcccc
Confidence            7788999998876521      111111 134799999999998654456677667776643211111  11100     


Q ss_pred             ----hhhcCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcc-cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEE
Q 021871          203 ----SLEKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (306)
Q Consensus       203 ----~~~~~~~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  276 (306)
                          ....+++++|+|+|.++.+.|..+...+ .+|++++|.+.. ++.  .+   ..+ ..+++.||++++++.+++|.
T Consensus       443 ~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~--~~---~e~-~~a~~eGv~~~~~~~~~~i~  516 (639)
T PRK12809        443 EYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG--SR---KEV-VNAREEGVEFQFNVQPQYIA  516 (639)
T ss_pred             ccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CH---HHH-HHHHHcCCeEEeccCCEEEE
Confidence                1124689999999999999999888877 579999987543 332  21   122 23578899999999999997


Q ss_pred             eCCCCcEEEEEe---C------CC-----------CEEecCEEEEecCCC
Q 021871          277 AGSDGRVAAVKL---E------DG-----------STIDADTVILLPYDQ  306 (306)
Q Consensus       277 ~~~~~~v~~v~~---~------~G-----------~~i~~d~vv~a~g~~  306 (306)
                      .+++|++.+|++   .      +|           .++++|.||+|+|++
T Consensus       517 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~  566 (639)
T PRK12809        517 CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQ  566 (639)
T ss_pred             ECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCC
Confidence            545676665533   1      12           268999999999963

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.83  E-value=1.5e-19  Score=161.50  Aligned_cols=184  Identities=17%  Similarity=0.261  Sum_probs=118.6

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--CCCCccccccc--------cCCCCC--CCCCCCcc
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPALTKGYL--------FPLDKK--PARLPGFH  115 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~~~~~~~--------~~~~~~--~~~~~~~~  115 (306)
                      .+..+||+|||||++||++|++|.++|.+  +++|+||+...+  |.......-.+        ++....  ...++.+.
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~   82 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFA   82 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcc
Confidence            35578999999999999999999999984  299999997654  11111100000        000000  11122221


Q ss_pred             cccCCCCCcCChhHHhhcCeE--EEeCCcEEEEeCCC----CEEEcCCCcE--EecCcEEEeeCCCCc-cCCCCCCCCCC
Q 021871          116 TCVGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEK----QTLITNSGKL--LKYGSLIVATGCTAS-RFPEKIGGYLP  186 (306)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~v~~~~----~~v~~~~g~~--~~~~~lila~G~~~~-~~~~~~~~~~~  186 (306)
                           ....++..+++++++.  +..++.|..++.+.    ++|+++++..  +.+++||+|||.... ++|.++|    
T Consensus        83 -----~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G----  153 (443)
T COG2072          83 -----EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAG----  153 (443)
T ss_pred             -----cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCC----
Confidence                 1235666777777643  45566666666533    3788887765  459999999996432 2354444    


Q ss_pred             CEEEEcc-HHHHHHHH-HhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc
Q 021871          187 GVHYIRD-VADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (306)
Q Consensus       187 g~~~~~~-~~~~~~~~-~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~  243 (306)
                       ...+.. ..++..+. .....+|+|+|||+|.||++++.+|.+.+.+|++++|++.+.
T Consensus       154 -~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~  211 (443)
T COG2072         154 -LDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI  211 (443)
T ss_pred             -ccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence             332211 11222222 233479999999999999999999999999999999998764

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.82  E-value=8.5e-19  Score=159.01  Aligned_cols=230  Identities=21%  Similarity=0.273  Sum_probs=143.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||||++|+++|..|++.|+   +|+|+|+.+..+        |.+.. ..+...++       ........++
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~---~V~v~e~~~~~g--------G~l~~-gip~~~~~-------~~~~~~~~~~  202 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGH---TVTVFEREDRCG--------GLLMY-GIPNMKLD-------KAIVDRRIDL  202 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC---eEEEEecCCCCC--------ceeec-cCCCccCC-------HHHHHHHHHH
Confidence            34799999999999999999999998   999999887532        11100 00000010       0011233466


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHH-HHHHH-------
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-ADALI-------  201 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~-------  201 (306)
                      +++.|++++.++.+. .+...      +.....||.|++|+|+.....+++++.+.+++....++.. .....       
T Consensus       203 ~~~~Gv~~~~~~~v~-~~~~~------~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~  275 (485)
T TIGR01317       203 LSAEGIDFVTNTEIG-VDISA------DELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKD  275 (485)
T ss_pred             HHhCCCEEECCCEeC-CccCH------HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccc
Confidence            788899999887663 11110      1113579999999999833345677777778776532221 11111       


Q ss_pred             --HhhhcCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcccccccC----H---H---HHHHHHHHHHHcCCEE-E
Q 021871          202 --SSLEKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRLFT----P---S---LAQRYEQLYQQNGVKF-V  267 (306)
Q Consensus       202 --~~~~~~~~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~~~~~~~----~---~---~~~~~~~~~~~~gv~i-~  267 (306)
                        .....+++|+|||+|++|+|.|..+...+ ..|+++.+.+........    +   .   ....+.+..+..|+++ +
T Consensus       276 ~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~  355 (485)
T TIGR01317       276 IIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPRE  355 (485)
T ss_pred             cccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceE
Confidence              11135789999999999999987777765 579999877654332110    1   1   1122334444456654 4


Q ss_pred             cCceEEEEEeCCCCcEEEEEe--------CCCC-----------EEecCEEEEecCC
Q 021871          268 KGASIKNLEAGSDGRVAAVKL--------EDGS-----------TIDADTVILLPYD  305 (306)
Q Consensus       268 ~~~~v~~i~~~~~~~v~~v~~--------~~G~-----------~i~~d~vv~a~g~  305 (306)
                      +++.+.+|..++++++.+|++        ++|.           ++++|.||+|+|+
T Consensus       356 ~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~  412 (485)
T TIGR01317       356 YSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF  412 (485)
T ss_pred             EecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence            577788887433466666653        1332           6999999999996

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK13984 putative oxidoreductase; Provisional

Probab=99.81  E-value=1.8e-18  Score=161.65  Aligned_cols=223  Identities=20%  Similarity=0.252  Sum_probs=140.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...++|+|||+|++|+++|..|+++|+   +|+|+|+.+..+        |.+.. ......++  ..     .......
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~---~v~vie~~~~~g--------G~~~~-~i~~~~~~--~~-----~~~~~~~  341 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGY---EVTVYESLSKPG--------GVMRY-GIPSYRLP--DE-----ALDKDIA  341 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC--------ceEee-cCCcccCC--HH-----HHHHHHH
Confidence            346799999999999999999999998   999999887542        11100 00000111  00     0122345


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhh----
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL----  204 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----  204 (306)
                      ++++.+++++.++.|.. +     +..++ ....||+||+|+|+...+.+++++.+.+++....  .....+.+.+    
T Consensus       342 ~~~~~gv~~~~~~~v~~-~-----~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~--~~l~~~~~~~~~~~  412 (604)
T PRK13984        342 FIEALGVKIHLNTRVGK-D-----IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQAL--PLLREIRDYLRGEG  412 (604)
T ss_pred             HHHHCCcEEECCCEeCC-c-----CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHH--HHHHHHHhhhccCC
Confidence            67788999988876631 1     11111 1357999999999875444566666556655421  1111111111    


Q ss_pred             ---hcCCeEEEEcCCHHHHHHHHHHHhCC------CcEEEEecC--CcccccccCHHHHHHHHHHHHHcCCEEEcCceEE
Q 021871          205 ---EKAKKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPE--NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  273 (306)
Q Consensus       205 ---~~~~~v~viG~g~~a~e~a~~l~~~~------~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~  273 (306)
                         ..+++|+|||+|.+|+|+|..+.+.+      .+|+++...  ...++.  ..   ..+.+ +.+.||++++++.+.
T Consensus       413 ~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~--~~---~e~~~-~~~~GV~i~~~~~~~  486 (604)
T PRK13984        413 PKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPA--DM---EEIEE-GLEEGVVIYPGWGPM  486 (604)
T ss_pred             CcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCC--CH---HHHHH-HHHcCCEEEeCCCCE
Confidence               13689999999999999999998764      267776432  122221  11   22333 346899999999998


Q ss_pred             EEEeCCCCcEEEEEeC--------CC-----------CEEecCEEEEecCCC
Q 021871          274 NLEAGSDGRVAAVKLE--------DG-----------STIDADTVILLPYDQ  306 (306)
Q Consensus       274 ~i~~~~~~~v~~v~~~--------~G-----------~~i~~d~vv~a~g~~  306 (306)
                      ++.. +++++.+|++.        +|           .++++|.||+|+|+.
T Consensus       487 ~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~  537 (604)
T PRK13984        487 EVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA  537 (604)
T ss_pred             EEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC
Confidence            8874 56666565542        12           369999999999974

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.81  E-value=7.6e-19  Score=155.04  Aligned_cols=231  Identities=17%  Similarity=0.228  Sum_probs=141.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--CCCC--------ccccccc---------cCCCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERP--------ALTKGYL---------FPLDKKPA  109 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~--------~~~~~~~---------~~~~~~~~  109 (306)
                      +.+++|+|||||+|||++|+.|.+.|+   +++++|+.+.++  |...        .+.....         ++....+.
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~---~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~   80 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGH---EVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPE   80 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCC---CceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcc
Confidence            457899999999999999999999999   999999998875  2222        1111111         11111111


Q ss_pred             CCCCc-ccccCCCCCcCChhHHhhcCe--EEEeCCcEEEEeCCC---CEEEcCCC----cEEecCcEEEeeCCCC-ccCC
Q 021871          110 RLPGF-HTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK---QTLITNSG----KLLKYGSLIVATGCTA-SRFP  178 (306)
Q Consensus       110 ~~~~~-~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~v~~~~---~~v~~~~g----~~~~~~~lila~G~~~-~~~~  178 (306)
                      +.+.+ +.  ..+...++..+++++++  .+.++++|..++...   +.+...+.    ...-||.|++|+|... ..+|
T Consensus        81 ~~~~~~p~--~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P  158 (448)
T KOG1399|consen   81 RDPRYFPS--HREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIP  158 (448)
T ss_pred             cCcccCCC--HHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCC
Confidence            11111 00  01223466666777775  477888888887653   46655443    3788999999999883 2245


Q ss_pred             CCCCC---CCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHH
Q 021871          179 EKIGG---YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY  255 (306)
Q Consensus       179 ~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  255 (306)
                      .+++.   .++|    +.++..+.-......+++|+|||.|+||.|++.+++..++.+++..+ ...... ..       
T Consensus       159 ~~~g~~~~~f~G----~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~-------  225 (448)
T KOG1399|consen  159 QIPGPGIESFKG----KIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EP-------  225 (448)
T ss_pred             cCCCCchhhcCC----cceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-cc-------
Confidence            44432   2333    12333333334455789999999999999999999999888888754 100000 00       


Q ss_pred             HHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       256 ~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .. .-..++..+..  |..+.  +++.   +-..++....+|.+|+|||.
T Consensus       226 ~~-~~~~~~~~~~~--i~~~~--e~~~---~~~~~~~~~~~D~ii~ctgy  267 (448)
T KOG1399|consen  226 PE-ILGENLWQVPS--IKSFT--EDGS---VFEKGGPVERVDRIIFCTGY  267 (448)
T ss_pred             cc-eeecceEEccc--ccccc--Ccce---EEEcCceeEEeeeEEEeeee
Confidence            00 01123333322  66666  3432   44556667889999999984

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.80  E-value=3.5e-18  Score=160.80  Aligned_cols=234  Identities=14%  Similarity=0.114  Sum_probs=134.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC--C-----------------CCcc-ccccccCCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--E-----------------RPAL-TKGYLFPLDKKP  108 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~-----------------~~~~-~~~~~~~~~~~~  108 (306)
                      ...++|+|||||||||+||++|+++|+   +|+++|+.+..+.  .                 +... .+|.. ...-+ 
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh---~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~-~yGIp-  455 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGH---NVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVA-EYGIT-  455 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCC---eEEEEccccccccccccccccchhhhhccchhhhccccCCccc-ccCcc-
Confidence            456899999999999999999999999   9999998643211  1                 0000 11111 10000 


Q ss_pred             CCCCCcccccCCCCCcCChhHHhhcC--eEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCC-CccCCCCCCCCC
Q 021871          109 ARLPGFHTCVGSGGERQTPEWYKEKG--IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYL  185 (306)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~-~~~~~~~~~~~~  185 (306)
                      .+++.-        .........+.+  +.++.+..+   ..   .+..++-....||.|++|+|+. ++ .+.+|+.+.
T Consensus       456 ~R~~k~--------~l~~i~~il~~g~~v~~~~gv~l---G~---dit~edl~~~gyDAV~IATGA~kpr-~L~IPGeda  520 (1028)
T PRK06567        456 VRWDKN--------NLDILRLILERNNNFKYYDGVAL---DF---NITKEQAFDLGFDHIAFCIGAGQPK-VLDIENFEA  520 (1028)
T ss_pred             ccchHH--------HHHHHHHHHhcCCceEEECCeEE---Cc---cCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCccC
Confidence            111100        000011112223  444444331   11   1111111235799999999994 55 456777666


Q ss_pred             CCEEEEccHHHHHHHHHh--------hhcCCeEEEEcCCHHHHHHHHHHHh-----------------------------
Q 021871          186 PGVHYIRDVADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG-----------------------------  228 (306)
Q Consensus       186 ~g~~~~~~~~~~~~~~~~--------~~~~~~v~viG~g~~a~e~a~~l~~-----------------------------  228 (306)
                      +++....++.........        ...+++|+|||+|++|+|.|.....                             
T Consensus       521 ~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f  600 (1028)
T PRK06567        521 KGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEF  600 (1028)
T ss_pred             CCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHH
Confidence            676654332221111000        1135789999999999999984332                             


Q ss_pred             ----------------------CCCcEEEEecCCcc-cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871          229 ----------------------WKLDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (306)
Q Consensus       229 ----------------------~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~  285 (306)
                                            .+ .|++++|...- +|.  ..-..+.+.+ ..+.||+++......+|..+++|.+.+
T Consensus       601 ~~h~r~~g~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA--~~~~~eEv~~-A~eEGV~f~~~~~P~~i~~d~~g~v~~  676 (1028)
T PRK06567        601 IAHAKLFKEAKNNEELRKVFNKLG-GATVYYRGRLQDSPA--YKLNHEELIY-ALALGVDFKENMQPLRINVDKYGHVES  676 (1028)
T ss_pred             HHHHHhhcchhccchhhhhhccCC-ceEEEecCChhhCCC--CCCCHHHHHH-HHHcCcEEEecCCcEEEEecCCCeEEE
Confidence                                  12 28888887532 111  1001233333 466899999999999987655677766


Q ss_pred             EEeC--------------C-C---------------CEEecCEEEEecCCC
Q 021871          286 VKLE--------------D-G---------------STIDADTVILLPYDQ  306 (306)
Q Consensus       286 v~~~--------------~-G---------------~~i~~d~vv~a~g~~  306 (306)
                      +++.              + +               .+++||.||.|+|++
T Consensus       677 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~  727 (1028)
T PRK06567        677 VEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIE  727 (1028)
T ss_pred             EEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccC
Confidence            5543              1 1               268999999999974

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.78  E-value=6.9e-18  Score=156.29  Aligned_cols=224  Identities=22%  Similarity=0.253  Sum_probs=140.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...++|+|||+|++||++|+.|+++|+   +|+|+|+.+..+        |++. ..-+...++.       +......+
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~---~V~v~e~~~~~G--------G~l~-~gip~~~~~~-------~~~~~~l~  195 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGH---AVTIFEAGPKLG--------GMMR-YGIPAYRLPR-------EVLDAEIQ  195 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC--------Ceee-ecCCCccCCH-------HHHHHHHH
Confidence            345799999999999999999999998   899999987642        1111 0001111110       00122234


Q ss_pred             HHhhcCeEEEeCCcE-EEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcC
Q 021871          129 WYKEKGIEMIYQDPV-TSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA  207 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v-~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  207 (306)
                      .+.+.|+++..+..+ ..+..+.    +    ...||.+++|+|+.......+++....++...-++............+
T Consensus       196 ~~~~~Gv~~~~~~~~~~~~~~~~----~----~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~g  267 (564)
T PRK12771        196 RILDLGVEVRLGVRVGEDITLEQ----L----EGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLG  267 (564)
T ss_pred             HHHHCCCEEEeCCEECCcCCHHH----H----HhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCC
Confidence            566788988877554 2211110    0    135899999999876544455554455544332221111101112347


Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcc-cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~  285 (306)
                      ++++|+|+|.++++.+..+.+.+ .+++++.+.+.. ++.  .   ...+ +.+.+.||++++++.+.++..++++.+ +
T Consensus       268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~--~---~~~~-~~a~~~GVki~~~~~~~~i~~~~~~~~-~  340 (564)
T PRK12771        268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA--H---DEEI-EEALREGVEINWLRTPVEIEGDENGAT-G  340 (564)
T ss_pred             CCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC--C---HHHH-HHHHHcCCEEEecCCcEEEEcCCCCEE-E
Confidence            89999999999999999888887 678888887542 221  1   1222 234568999999999999986444443 3


Q ss_pred             EE-----e----CC-------C--CEEecCEEEEecCCC
Q 021871          286 VK-----L----ED-------G--STIDADTVILLPYDQ  306 (306)
Q Consensus       286 v~-----~----~~-------G--~~i~~d~vv~a~g~~  306 (306)
                      ++     .    .+       |  .++++|.||+|+|+.
T Consensus       341 v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~  379 (564)
T PRK12771        341 LRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD  379 (564)
T ss_pred             EEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC
Confidence            32     1    22       2  369999999999973

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=4.6e-18  Score=139.79  Aligned_cols=135  Identities=27%  Similarity=0.446  Sum_probs=109.6

Q ss_pred             cEEecCcEEEeeCCCCccCCCCCCCCCCCE-EEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEe
Q 021871          159 KLLKYGSLIVATGCTASRFPEKIGGYLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  237 (306)
Q Consensus       159 ~~~~~~~lila~G~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~  237 (306)
                      +.+.++.+++|+|.+|++ |.     +||. ++.   ..++++++.-..+.+.+|+|+|+.++|.|.+|+..+.+++++.
T Consensus       158 ~~~ta~~fvIatG~RPrY-p~-----IpG~~Ey~---ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmV  228 (503)
T KOG4716|consen  158 RFLTAENFVIATGLRPRY-PD-----IPGAKEYG---ITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMV  228 (503)
T ss_pred             EEeecceEEEEecCCCCC-CC-----CCCceeee---ecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEE
Confidence            378999999999999996 44     6763 333   3567777777778889999999999999999999999999999


Q ss_pred             cCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCC--CEEecCEEEEecCC
Q 021871          238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDG--STIDADTVILLPYD  305 (306)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G--~~i~~d~vv~a~g~  305 (306)
                      |+.-+..  ++.++.+.+.+.++++|+++...+....|+.-++++. .|..   ..+  .+-++|.|+||.|.
T Consensus       229 RSI~LrG--FDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR  298 (503)
T KOG4716|consen  229 RSILLRG--FDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGR  298 (503)
T ss_pred             EEeeccc--ccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhcc
Confidence            9865554  8999999999999999999999988888887666653 2322   222  25679999999986

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=5.1e-18  Score=140.04  Aligned_cols=227  Identities=19%  Similarity=0.248  Sum_probs=149.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...+||+||||||+|-+||.+.+++|+.  .=++-|+=           +|.... .....++-+.++--+.++...+.+
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiR--TGl~aerf-----------GGQvld-T~~IENfIsv~~teGpkl~~ale~  274 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIR--TGLVAERF-----------GGQVLD-TMGIENFISVPETEGPKLAAALEA  274 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcch--hhhhhhhh-----------CCeecc-ccchhheeccccccchHHHHHHHH
Confidence            4579999999999999999999999983  11222221           111100 001111112222222333456677


Q ss_pred             HHhhcCeEEEeCCcEEEEeCC-----CCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHH
Q 021871          129 WYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADAL  200 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~-----~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~  200 (306)
                      ..+++.+++.-..+..++.+.     ...+.+.+|-.+.++.+|++||.+=+. -.+||.+   -+|+-|+.   +|   
T Consensus       275 Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn-~nvPGE~e~rnKGVayCP---HC---  347 (520)
T COG3634         275 HVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRN-MNVPGEDEYRNKGVAYCP---HC---  347 (520)
T ss_pred             HHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhc-CCCCchHHHhhCCeeeCC---CC---
Confidence            778888887544455555552     226888999999999999999987543 2344432   45666654   33   


Q ss_pred             HHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCC
Q 021871          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGS  279 (306)
Q Consensus       201 ~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~  279 (306)
                      ...+.++++|+|||+|++|+|.|-.|+..-.+||++.-.+.+..       ...++++++. .+|+|+++..-++|.- +
T Consensus       348 DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA-------D~VLq~kl~sl~Nv~ii~na~Ttei~G-d  419 (520)
T COG3634         348 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA-------DAVLQDKLRSLPNVTIITNAQTTEVKG-D  419 (520)
T ss_pred             CCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh-------HHHHHHHHhcCCCcEEEecceeeEEec-C
Confidence            23567899999999999999999999999999999976554433       2345555543 5999999999999993 4


Q ss_pred             CCcEEEEEeCC---CC--EEecCEEEEecC
Q 021871          280 DGRVAAVKLED---GS--TIDADTVILLPY  304 (306)
Q Consensus       280 ~~~v~~v~~~~---G~--~i~~d~vv~a~g  304 (306)
                      +.+|.++...+   |+  .++-+.|++-.|
T Consensus       420 g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIG  449 (520)
T COG3634         420 GDKVTGLEYRDRVSGEEHHLELEGVFVQIG  449 (520)
T ss_pred             CceecceEEEeccCCceeEEEeeeeEEEEe
Confidence            56777776644   33  355566665544

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.72  E-value=3.2e-15  Score=126.58  Aligned_cols=250  Identities=18%  Similarity=0.202  Sum_probs=153.8

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC---------CCCCCCCCCCccccc
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP---------LDKKPARLPGFHTCV  118 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  118 (306)
                      +++.+|++.||-||+-|+.|..|.+.+.  .++..+|+.+.+.|+...+..+.-..         ...+...+ .|....
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~y-SFLNYL   78 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPY-SFLNYL   78 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCch-HHHHHH
Confidence            4567899999999999999999998863  38999999999888755444433211         00000000 000000


Q ss_pred             -----------------CCCCCcCChhHHhhcCeEEEeCCcEEEE---eCCCC---EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          119 -----------------GSGGERQTPEWYKEKGIEMIYQDPVTSI---DIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       119 -----------------~~~~~~~~~~~~~~~~v~~~~~~~v~~v---~~~~~---~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                                       ...-+..+.+|..+.--.++++.+|.+|   +.+..   .+.+.++..++++.||+.+|.+|.
T Consensus        79 ~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~  158 (436)
T COG3486          79 HEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPY  158 (436)
T ss_pred             HHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcC
Confidence                             0000111222222222346778888844   44332   256677779999999999999998


Q ss_pred             cCCCCCCCCCCCEEEEccHHHHHHHHHh--hhcCCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEecCCcccccc---
Q 021871          176 RFPEKIGGYLPGVHYIRDVADADALISS--LEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQRL---  246 (306)
Q Consensus       176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~v~viG~g~~a~e~a~~l~~~----~~~v~~~~~~~~~~~~~---  246 (306)
                      .+|.+....-+.+++     .++.+...  +...++|+|||+|.+|.|+-..|...    ..++.++.|+..+.|.-   
T Consensus       159 IP~~f~~l~~~~vfH-----ss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Sk  233 (436)
T COG3486         159 IPPCFRSLIGERVFH-----SSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSK  233 (436)
T ss_pred             CChHHhCcCccceee-----hHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccch
Confidence            655433321223333     33333222  22334599999999999999988754    23578899988765420   


Q ss_pred             -----------------------------------cCHHHHHH-----HHHHHH--HcCCEEEcCceEEEEEeCCCCcEE
Q 021871          247 -----------------------------------FTPSLAQR-----YEQLYQ--QNGVKFVKGASIKNLEAGSDGRVA  284 (306)
Q Consensus       247 -----------------------------------~~~~~~~~-----~~~~~~--~~gv~i~~~~~v~~i~~~~~~~v~  284 (306)
                                                         .+.+....     +++.+.  +..+.+..+++|++++..++|++ 
T Consensus       234 f~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~-  312 (436)
T COG3486         234 FGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY-  312 (436)
T ss_pred             hhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-
Confidence                                               11112222     222222  33689999999999998777753 


Q ss_pred             EEEeCCC-----CEEecCEEEEecCCC
Q 021871          285 AVKLEDG-----STIDADTVILLPYDQ  306 (306)
Q Consensus       285 ~v~~~~G-----~~i~~d~vv~a~g~~  306 (306)
                      .+.+...     +++++|.||+|||..
T Consensus       313 ~l~~~~~~~~~~~t~~~D~vIlATGY~  339 (436)
T COG3486         313 RLTLRHHETGELETVETDAVILATGYR  339 (436)
T ss_pred             EEEEeeccCCCceEEEeeEEEEecccc
Confidence            4554332     478999999999963

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.65  E-value=6.4e-16  Score=137.27  Aligned_cols=230  Identities=24%  Similarity=0.256  Sum_probs=148.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+||||||+||++|..|.+.|+   +|+++|+.+..+        |.+.. ..+.+.++       ++........
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~---~Vtv~e~~~~~G--------Gll~y-GIP~~kl~-------k~i~d~~i~~  182 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGH---DVTVFERVALDG--------GLLLY-GIPDFKLP-------KDILDRRLEL  182 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCC---eEEEeCCcCCCc--------eeEEe-cCchhhcc-------chHHHHHHHH
Confidence            34799999999999999999999999   999999876642        12110 11111111       1123456677


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhh-----
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-----  204 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----  204 (306)
                      +++.|++|+.++++-   .   .++++.- .-+||.+++|+|....+.-.+++.+.+++...-++..........     
T Consensus       183 l~~~Gv~~~~~~~vG---~---~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~  255 (457)
T COG0493         183 LERSGVEFKLNVRVG---R---DITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAED  255 (457)
T ss_pred             HHHcCeEEEEcceEC---C---cCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccc
Confidence            888999999887652   1   1111111 236699999999886555667777777776543332222211111     


Q ss_pred             ----hcCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCccccc-ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC
Q 021871          205 ----EKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  278 (306)
Q Consensus       205 ----~~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  278 (306)
                          ..+++++|||+|.+++|++......+. .++.+++...--.. ..+..-.....+...++|++......-..+..+
T Consensus       256 ~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~  335 (457)
T COG0493         256 RTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGN  335 (457)
T ss_pred             cCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeec
Confidence                123899999999999999998888876 67777532221000 011112344556678889988888888888876


Q ss_pred             CCCcEEEEEeCC-------------------CC--EEecCEEEEecCC
Q 021871          279 SDGRVAAVKLED-------------------GS--TIDADTVILLPYD  305 (306)
Q Consensus       279 ~~~~v~~v~~~~-------------------G~--~i~~d~vv~a~g~  305 (306)
                      ++|+|.++.+..                   |+  ++++|.|+.|+|+
T Consensus       336 e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~  383 (457)
T COG0493         336 EGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGF  383 (457)
T ss_pred             CCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhcc
Confidence            788776554321                   22  5778888888774

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.58  E-value=8e-14  Score=123.45  Aligned_cols=153  Identities=15%  Similarity=0.223  Sum_probs=85.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHH-HcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           50 ENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~-~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ..++|+|||||||||++|.+|. +.|+   +|+|+|+.+..+        |.+..... + +-+.++.+     ...+..
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~---~VtlfEk~p~pg--------GLvR~GVa-P-dh~~~k~v-----~~~f~~   99 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERV---KVDIFEKLPNPY--------GLIRYGVA-P-DHIHVKNT-----YKTFDP   99 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCC---eEEEEecCCCCc--------cEEEEeCC-C-CCccHHHH-----HHHHHH
Confidence            4578999999999999999876 5677   999999987742        22211111 0 11111111     122233


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCC--------C-CCC----CCCEEEEc---
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK--------I-GGY----LPGVHYIR---  192 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~--------~-~~~----~~g~~~~~---  192 (306)
                      .+...++++..+.++.   .   .+..++- ...||.||+|+|+.+..+|-+        . +.+    ++|.+...   
T Consensus       100 ~~~~~~v~f~gnv~VG---~---Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV  172 (506)
T PTZ00188        100 VFLSPNYRFFGNVHVG---V---DLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLI  172 (506)
T ss_pred             HHhhCCeEEEeeeEec---C---ccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEE
Confidence            3444667766443331   1   1111111 238999999999986543310        0 222    44554222   


Q ss_pred             ----cHHHH---HHHHHh---hhcCCeEEEEcCCHHHHHHHHHHH
Q 021871          193 ----DVADA---DALISS---LEKAKKVVVVGGGYIGMEVAAAAV  227 (306)
Q Consensus       193 ----~~~~~---~~~~~~---~~~~~~v~viG~g~~a~e~a~~l~  227 (306)
                          ...+.   ..+...   +...++++|||+|++|+|+|..|.
T Consensus       173 ~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~  217 (506)
T PTZ00188        173 YFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILI  217 (506)
T ss_pred             EeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHc
Confidence                11111   011111   124578999999999999999764

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.51  E-value=8.8e-14  Score=116.55  Aligned_cols=154  Identities=21%  Similarity=0.283  Sum_probs=100.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+|.|||+||||+++|..|.++ +++.+|.|+|+.+..+ .   +......+.+      |..+.+     ...+...+
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~PvPF-G---LvRyGVAPDH------pEvKnv-----intFt~~a   83 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPVPF-G---LVRYGVAPDH------PEVKNV-----INTFTKTA   83 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCccc-c---eeeeccCCCC------cchhhH-----HHHHHHHh
Confidence            35999999999999999999997 4567999999997742 1   1110112222      222222     24556666


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEcc-------HHHHHHHHHh
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD-------VADADALISS  203 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~  203 (306)
                      ++....+..|.+|-      ..+.+.+- .-.||.++||.|+...+-..+||.+.+++...+.       ....+.+.-.
T Consensus        84 E~~rfsf~gNv~vG------~dvsl~eL-~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~d  156 (468)
T KOG1800|consen   84 EHERFSFFGNVKVG------RDVSLKEL-TDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPD  156 (468)
T ss_pred             hccceEEEecceec------ccccHHHH-hhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcc
Confidence            66667777665541      11111111 3489999999999877667788888888765432       2222222222


Q ss_pred             hhcCCeEEEEcCCHHHHHHHHHHHh
Q 021871          204 LEKAKKVVVVGGGYIGMEVAAAAVG  228 (306)
Q Consensus       204 ~~~~~~v~viG~g~~a~e~a~~l~~  228 (306)
                      + .+.+++|||.|+.++|+|..|..
T Consensus       157 l-s~~~vvIvG~GNVAlDvARiLls  180 (468)
T KOG1800|consen  157 L-SGRKVVIVGNGNVALDVARILLS  180 (468)
T ss_pred             c-ccceEEEEccCchhhhhhhhhhC
Confidence            2 37789999999999999998753

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.50  E-value=4.7e-13  Score=90.96  Aligned_cols=80  Identities=39%  Similarity=0.656  Sum_probs=74.0

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  288 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~  288 (306)
                      +++|||+|.+|+|+|..+++.+.+|+++.+.+.+++ .+++.+...+.+.++++||++++++.+.+++.++++ +. |++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~   77 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL   77 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence            589999999999999999999999999999999995 489999999999999999999999999999986666 65 888


Q ss_pred             CCC
Q 021871          289 EDG  291 (306)
Q Consensus       289 ~~G  291 (306)
                      +||
T Consensus        78 ~~g   80 (80)
T PF00070_consen   78 EDG   80 (80)
T ss_dssp             ETS
T ss_pred             ecC
Confidence            886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.46  E-value=4e-13  Score=107.20  Aligned_cols=172  Identities=23%  Similarity=0.347  Sum_probs=123.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhh
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (306)
                      +.+|||||+||.+||-.|+..- ++.+|+++...+..--.                .+            +..+.+++++
T Consensus         1 kfivvgggiagvscaeqla~~~-psa~illitass~vksv----------------tn------------~~~i~~ylek   51 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLE-PSAEILLITASSFVKSV----------------TN------------YQKIGQYLEK   51 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhC-CCCcEEEEeccHHHHHH----------------hh------------HHHHHHHHHh
Confidence            3689999999999999999985 67899999876543100                00            0122222232


Q ss_pred             cCeE----------EE--eCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHH
Q 021871          133 KGIE----------MI--YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL  200 (306)
Q Consensus       133 ~~v~----------~~--~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  200 (306)
                      ++++          +.  .+ .|..++..+..+.+.+|..+.|++|++|+|.+|...-  ++ --+.+...++-.+.+.+
T Consensus        52 fdv~eq~~~elg~~f~~~~~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQll  127 (334)
T KOG2755|consen   52 FDVKEQNCHELGPDFRRFLN-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLL  127 (334)
T ss_pred             cCccccchhhhcccHHHHHH-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHH
Confidence            2221          11  12 2445566677899999999999999999999987432  22 12344555666777777


Q ss_pred             HHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHH
Q 021871          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY  259 (306)
Q Consensus       201 ~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (306)
                      ...+.+.|.|+|+|.|-++.|++.++..  .+|++....+.+...+++|...+.+...+
T Consensus       128 q~kl~kaK~VlilgnGgia~El~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l  184 (334)
T KOG2755|consen  128 QCKLVKAKIVLILGNGGIAMELTYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINL  184 (334)
T ss_pred             HHHHhhcceEEEEecCchhHHHHHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhh
Confidence            7788889999999999999999999875  46899989888888888888777776665

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.45  E-value=2.4e-12  Score=112.78  Aligned_cols=203  Identities=19%  Similarity=0.214  Sum_probs=114.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ++++||+|||||+.|+++|+.|.+.. ++.+|.|+||.+....+....+.|.+.........  .++.-+.........+
T Consensus         1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~-p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~--slka~l~~~g~~~~~~   77 (429)
T COG0579           1 MMDYDVVIIGGGIMGAATAYELSEYE-PDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPG--SLKAKLCVAGNINEFA   77 (429)
T ss_pred             CCceeEEEECCcHHHHHHHHHHHHhC-CCceEEEEEccCccccccccCcccceeccccCCCc--chhhHHHHHHHHHHHH
Confidence            35689999999999999999999997 45599999999988776666555444332111100  1110000011111233


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCcc-CCCC----CCCCCCCEEEEccHHHHHHHHHh
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-FPEK----IGGYLPGVHYIRDVADADALISS  203 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~-~~~~----~~~~~~g~~~~~~~~~~~~~~~~  203 (306)
                      +++++++.+                       ....++++|+|..... +...    ....++.+.    ..+.+.+.+.
T Consensus        78 ~~kq~~~~f-----------------------~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~----~ld~~~i~~~  130 (429)
T COG0579          78 ICKQLGIPF-----------------------INCGKLSVATGEEEVERLEKLYERGKANGVFDLE----ILDKEEIKEL  130 (429)
T ss_pred             HHHHhCCcc-----------------------cccCeEEEEEChHHHHHHHHHHHHHhhCCCccee----ecCHHHHHhh
Confidence            344444222                       2447788888854321 0000    000011111    1122222221


Q ss_pred             hhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcE
Q 021871          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  283 (306)
Q Consensus       204 ~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v  283 (306)
                      ..                   .+.+-..-- +........   ....+...+.+.++.+|++++++++|+.|+..++| +
T Consensus       131 eP-------------------~l~~~~~aa-l~~p~~giV---~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~  186 (429)
T COG0579         131 EP-------------------LLNEGAVAA-LLVPSGGIV---DPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-V  186 (429)
T ss_pred             Cc-------------------cccccceee-EEcCCCceE---cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-e
Confidence            11                   111000000 111222111   14456777888888899999999999999986665 4


Q ss_pred             EEEEeCCCCE-EecCEEEEecCC
Q 021871          284 AAVKLEDGST-IDADTVILLPYD  305 (306)
Q Consensus       284 ~~v~~~~G~~-i~~d~vv~a~g~  305 (306)
                      ..+.+.+|++ ++|+.||.|.|.
T Consensus       187 ~~~~~~~g~~~~~ak~Vin~AGl  209 (429)
T COG0579         187 FVLNTSNGEETLEAKFVINAAGL  209 (429)
T ss_pred             EEEEecCCcEEEEeeEEEECCch
Confidence            4688888876 999999999985

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.43  E-value=4.9e-15  Score=119.50  Aligned_cols=147  Identities=31%  Similarity=0.497  Sum_probs=94.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCc--CChhHH
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER--QTPEWY  130 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  130 (306)
                      ||+|||||+||++||.+|++.+.   +++++|+.+...+.........+......      ..... .  ..  .+.+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~---~v~ii~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~--~~~~~~~~~~   68 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGA---KVLIIEKSPGTPYNSGCIPSPLLVEIAPH------RHEFL-P--ARLFKLVDQL   68 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS---EEEEESSSSHHHHHHSHHHHHHHHHHHHH------HHHHH-H--HHHGHHHHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCC---eEEEEeccccccccccccccccccccccc------ccccc-c--cccccccccc
Confidence            79999999999999999999888   99999887653322111111000000000      00000 0  00  223334


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEE----------EcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHH
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTL----------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL  200 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v----------~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  200 (306)
                      ...+++++.+.++.+++.....+          ...++..+.||+||+|+|..+.. |.+++.  +.....+.+.+++.+
T Consensus        69 ~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~-~~i~g~--~~~~~~~~~~~~~~~  145 (201)
T PF07992_consen   69 KNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRT-PNIPGE--EVAYFLRGVDDAQRF  145 (201)
T ss_dssp             HHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEE-ESSTTT--TTECBTTSEEHHHHH
T ss_pred             ccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccce-eecCCC--ccccccccccccccc
Confidence            66889998888999999876632          23345689999999999988774 344432  112223456678888


Q ss_pred             HHhhhcCCeEEEEc
Q 021871          201 ISSLEKAKKVVVVG  214 (306)
Q Consensus       201 ~~~~~~~~~v~viG  214 (306)
                      .+....+++++|+|
T Consensus       146 ~~~~~~~~~v~VvG  159 (201)
T PF07992_consen  146 LELLESPKRVAVVG  159 (201)
T ss_dssp             HTHSSTTSEEEEES
T ss_pred             cccccccccccccc
Confidence            87777777999999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.42  E-value=6.3e-13  Score=124.22  Aligned_cols=156  Identities=22%  Similarity=0.360  Sum_probs=101.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...++|+|||+||+||+||-.|.+.|+   .|+|+|+.+..+        |.+. ..-+..++.-+       ..+...+
T Consensus      1783 rtg~~vaiigsgpaglaaadqlnk~gh---~v~vyer~dr~g--------gll~-ygipnmkldk~-------vv~rrv~ 1843 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGH---TVTVYERSDRVG--------GLLM-YGIPNMKLDKF-------VVQRRVD 1843 (2142)
T ss_pred             ccCcEEEEEccCchhhhHHHHHhhcCc---EEEEEEecCCcC--------ceee-ecCCccchhHH-------HHHHHHH
Confidence            446899999999999999999999999   999999987752        2211 01111111100       0123445


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHH--HHHHH-hh-
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS-SL-  204 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~-~~-  204 (306)
                      .+.+.|++|..|+++-.-      +.+ |+-.-+.|.+|+|+|+...+-.++|+.+.+|+.+.-++.+.  ..+.+ .+ 
T Consensus      1844 ll~~egi~f~tn~eigk~------vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d 1916 (2142)
T KOG0399|consen 1844 LLEQEGIRFVTNTEIGKH------VSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLD 1916 (2142)
T ss_pred             HHHhhCceEEeecccccc------ccH-HHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccc
Confidence            577789999988776321      222 22234789999999987544455788888888765332221  11111 11 


Q ss_pred             -----hcCCeEEEEcCCHHHHHHHHHHHhCC
Q 021871          205 -----EKAKKVVVVGGGYIGMEVAAAAVGWK  230 (306)
Q Consensus       205 -----~~~~~v~viG~g~~a~e~a~~l~~~~  230 (306)
                           .++++|+|||+|.+|-+....-.+.|
T Consensus      1917 ~~~~~~~gkkvivigggdtg~dcigtsvrhg 1947 (2142)
T KOG0399|consen 1917 GNYISAKGKKVIVIGGGDTGTDCIGTSVRHG 1947 (2142)
T ss_pred             cceeccCCCeEEEECCCCccccccccchhhc
Confidence                 25789999999999998877766665

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.42  E-value=6.5e-12  Score=106.96  Aligned_cols=78  Identities=13%  Similarity=0.160  Sum_probs=57.5

Q ss_pred             HHHhCCCcEEEEecCCccccc-ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEec
Q 021871          225 AAVGWKLDTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP  303 (306)
Q Consensus       225 ~l~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~  303 (306)
                      .....+...+.- .+.++.|. .-...+.+.+.+++++.||++++++.|.+++..+.+.  .+.+.+|+++.||.+|+||
T Consensus        87 ~~e~~Gi~~~e~-~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f--~l~t~~g~~i~~d~lilAt  163 (408)
T COG2081          87 WVEGLGIALKEE-DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGF--RLDTSSGETVKCDSLILAT  163 (408)
T ss_pred             HHHhcCCeeEEc-cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceE--EEEcCCCCEEEccEEEEec
Confidence            333344333333 33344443 3466889999999999999999999999999643233  6999999899999999999


Q ss_pred             CC
Q 021871          304 YD  305 (306)
Q Consensus       304 g~  305 (306)
                      |-
T Consensus       164 GG  165 (408)
T COG2081         164 GG  165 (408)
T ss_pred             CC
Confidence            94

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.37  E-value=7.1e-12  Score=102.98  Aligned_cols=235  Identities=18%  Similarity=0.229  Sum_probs=141.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcc-ccccccCCCCCCCCCCCcccccCCCCCcCCh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL-TKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (306)
                      .++++|+|||||.+|+++|..+.++ ++..+|-|+|+.+.+-|+...- .++.+...+...-               ...
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rk-l~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr---------------~~a  100 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRK-LGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRR---------------KQA  100 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhh-cCCCceEEecchhhcccCcceEEeccchhhhhhccC---------------ccc
Confidence            4578999999999999999999987 3567999999998876663211 1222211111100               000


Q ss_pred             hHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCC----CCCCCCCEEEEccHHHHHHHHHh
Q 021871          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK----IGGYLPGVHYIRDVADADALISS  203 (306)
Q Consensus       128 ~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~  203 (306)
                      . +--.+.... ...|...+++.+++.+.+|++|.|||+|+|+|.+.+. ..+    +..+.|++...+.....+...+.
T Consensus       101 ~-liP~~a~wi-~ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y-~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~  177 (446)
T KOG3851|consen  101 S-LIPKGATWI-KEKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDY-GKIKGLVEALDTPGVCSNYSPKYVDKVYKE  177 (446)
T ss_pred             c-cccCCcHHH-HHHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceecc-chhcChHhhccCCCcccccChHHHHHHHHH
Confidence            0 000122222 2367777888999999999999999999999987552 222    33456777666555555555554


Q ss_pred             hh---cCCeEEEE--------cCCHHHHHHHHHH-HhCCC--cEEEEec--CCcccccccCHHHHHHHHHHHHHcCCEEE
Q 021871          204 LE---KAKKVVVV--------GGGYIGMEVAAAA-VGWKL--DTTIIFP--ENHLLQRLFTPSLAQRYEQLYQQNGVKFV  267 (306)
Q Consensus       204 ~~---~~~~v~vi--------G~g~~a~e~a~~l-~~~~~--~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~gv~i~  267 (306)
                      +.   .+.-+--.        |+-.-.+-++... .+.+.  ++.+++.  -+.+..   -....+.+++..++++|++-
T Consensus       178 ~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg---Vk~Y~~AL~k~~~~rni~vn  254 (446)
T KOG3851|consen  178 LMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG---VKHYADALEKVIQERNITVN  254 (446)
T ss_pred             HHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec---HHHHHHHHHHHHHhcceEee
Confidence            43   34433333        3333334444433 33443  3444433  233332   34567889999999999999


Q ss_pred             cCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCC
Q 021871          268 KGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILLPYD  305 (306)
Q Consensus       268 ~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~  305 (306)
                      +.-...++..++...+-+....-|  ++++++.+-+.+++
T Consensus       255 ~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppm  294 (446)
T KOG3851|consen  255 YKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPM  294 (446)
T ss_pred             eccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCC
Confidence            999999998532222211111115  36788888776654

>PRK09897 hypothetical protein; Provisional

Probab=99.35  E-value=2.5e-11  Score=110.48  Aligned_cols=170  Identities=16%  Similarity=0.151  Sum_probs=96.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC----CCCCccccccccCC--CCCCCCCCCccccc------
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPALTKGYLFPL--DKKPARLPGFHTCV------  118 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------  118 (306)
                      +++|+|||||++|+++|.+|.+.+ ...+|+|+|+....+    |....-...++...  ...+...+.|....      
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~-~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~   79 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQ-TPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS   79 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcC-CCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH
Confidence            368999999999999999999875 356899999976543    32210000000000  00000001111000      


Q ss_pred             -------------C------CCCCcCChhH-------HhhcC--eEEEeCCcEEEEeCCCC--EEEcCC-CcEEecCcEE
Q 021871          119 -------------G------SGGERQTPEW-------YKEKG--IEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLI  167 (306)
Q Consensus       119 -------------~------~~~~~~~~~~-------~~~~~--v~~~~~~~v~~v~~~~~--~v~~~~-g~~~~~~~li  167 (306)
                                   .      .....|+...       +.+.+  +.++.+++|+++...+.  .+.+++ +..+.+|+||
T Consensus        80 ~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAV  159 (534)
T ss_pred             HHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEE
Confidence                         0      0000111111       22334  67777889999977544  455544 4678999999


Q ss_pred             EeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhC
Q 021871          168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW  229 (306)
Q Consensus       168 la~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~  229 (306)
                      +|+|......+.  +  .+  .++...++.. ....+. +.+|+|+|.|.+++|++..|...
T Consensus       160 LAtGh~~p~~~~--~--~~--~yi~~pw~~~-~~~~i~-~~~V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        160 IATGHVWPDEEE--A--TR--TYFPSPWSGL-MEAKVD-ACNVGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             ECCCCCCCCCCh--h--hc--cccCCCCcch-hhcCCC-CCeEEEECCCHHHHHHHHHHHhc
Confidence            999975432111  0  11  2333333322 222333 68999999999999999998755

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.34  E-value=7.3e-11  Score=103.07  Aligned_cols=187  Identities=18%  Similarity=0.206  Sum_probs=104.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC----CCCCccccccccCCCCCCCCCCC----cccccC---
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPALTKGYLFPLDKKPARLPG----FHTCVG---  119 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---  119 (306)
                      +++|+|||||++|+.+|.+|.+.-.+...|.|+|+...++    |....-......+........|.    |.....   
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~   80 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL   80 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence            4699999999999999999999876566699999998865    32211000000000000000011    110000   


Q ss_pred             -----------------------CCCCcCChhHHhhcC---eEEEeCCcEEEEeCC----CCEEEcCCCcEEecCcEEEe
Q 021871          120 -----------------------SGGERQTPEWYKEKG---IEMIYQDPVTSIDIE----KQTLITNSGKLLKYGSLIVA  169 (306)
Q Consensus       120 -----------------------~~~~~~~~~~~~~~~---v~~~~~~~v~~v~~~----~~~v~~~~g~~~~~~~lila  169 (306)
                                             ......+..++++..   +.+. +.+++++...    ...+...+|....||-+|+|
T Consensus        81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vla  159 (474)
T COG4529          81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLA  159 (474)
T ss_pred             cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEe
Confidence                                   000001111111111   3333 3345555444    12566678888999999999


Q ss_pred             eCCCCccCCCCCCCCCCCE-EEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCC
Q 021871          170 TGCTASRFPEKIGGYLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPEN  240 (306)
Q Consensus       170 ~G~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~  240 (306)
                      ||..+...+. -..+.++- -+..+..... ..+.++...+|+|+|+|.+.+|....+...+  ..+|.++|..
T Consensus       160 tgh~~~~~~~-~~~~~~~~~~~ia~~~~~~-~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG  231 (474)
T COG4529         160 TGHSAPPADP-AARDLKGSPRLIADPYPAN-ALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG  231 (474)
T ss_pred             ccCCCCCcch-hhhccCCCcceeccccCCc-ccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence            9987653332 11112221 1233333332 2334555677999999999999999999875  4688888874

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.32  E-value=9e-13  Score=115.62  Aligned_cols=56  Identities=30%  Similarity=0.472  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|+++.. +++.+.+|++.+|+ +.+|.||+|+|.
T Consensus       146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~  201 (358)
T PF01266_consen  146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGA  201 (358)
T ss_dssp             HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GG
T ss_pred             ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEecccc
Confidence            678888999999999999999999999997 56777789999995 999999999984

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.31  E-value=3.2e-11  Score=104.42  Aligned_cols=39  Identities=26%  Similarity=0.449  Sum_probs=35.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ...++++|||||+||++||+.|++.|+   +|.++||++.++
T Consensus       122 ~v~~svLVIGGGvAGitAAl~La~~G~---~v~LVEKepsiG  160 (622)
T COG1148         122 EVSKSVLVIGGGVAGITAALELADMGF---KVYLVEKEPSIG  160 (622)
T ss_pred             hhccceEEEcCcHHHHHHHHHHHHcCC---eEEEEecCCccc
Confidence            345799999999999999999999999   999999998875

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.28  E-value=4.6e-11  Score=106.37  Aligned_cols=55  Identities=24%  Similarity=0.274  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+.+.+.+.+++.|++++.+++|.+++.. ++.+ .|.+.+| ++.+|.||+|+|.
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g-~i~ad~vV~A~G~  202 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQG-EYEARTLINCAGL  202 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCC-EEEeCEEEECCCc
Confidence            5678888999999999999999999999863 4444 5788777 8999999999985

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.28  E-value=2.9e-10  Score=100.89  Aligned_cols=91  Identities=15%  Similarity=0.162  Sum_probs=73.7

Q ss_pred             EEEcCCHHHHHHH-HHHH----hCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871          211 VVVGGGYIGMEVA-AAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (306)
Q Consensus       211 ~viG~g~~a~e~a-~~l~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~  285 (306)
                      +|++-+..|+|.+ ..+.    ..+.+|+++.+.+..++.   ..+.+.+.+.+++.|++++.+++|.+++.. ++.+..
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~  294 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTA  294 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEE
Confidence            6788888999988 5554    468999999998888874   378888999999999999999999999864 555555


Q ss_pred             EEeCCCC--EEecCEEEEecCC
Q 021871          286 VKLEDGS--TIDADTVILLPYD  305 (306)
Q Consensus       286 v~~~~G~--~i~~d~vv~a~g~  305 (306)
                      +.+.+|+  .+++|.||+|+|.
T Consensus       295 v~~~~g~~~~i~AD~VVLAtGr  316 (422)
T PRK05329        295 VWTRNHGDIPLRARHFVLATGS  316 (422)
T ss_pred             EEeeCCceEEEECCEEEEeCCC
Confidence            5555553  5899999999985

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.23  E-value=9.7e-12  Score=109.85  Aligned_cols=121  Identities=24%  Similarity=0.280  Sum_probs=61.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC-------CCCcccc-----ccccCCC--CCCCCCCCc---
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK-----GYLFPLD--KKPARLPGF---  114 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-------~~~~~~~-----~~~~~~~--~~~~~~~~~---  114 (306)
                      |||+|||||+|||.||..|++.|.   +|+|+|+.+..+-       .++-+.+     .......  ...+-.+-+   
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~---~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f   77 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGA---RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF   77 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT-----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence            699999999999999999999998   9999999987530       1111111     0000000  000000000   


Q ss_pred             --------------cccc--------CCCCC----cCChhHHhhcCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCc
Q 021871          115 --------------HTCV--------GSGGE----RQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGS  165 (306)
Q Consensus       115 --------------~~~~--------~~~~~----~~~~~~~~~~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~  165 (306)
                                    ....        .+...    ..+...+++.+++++++++|.++..++.   .+.++++..+.+|.
T Consensus        78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~  157 (409)
T PF03486_consen   78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA  157 (409)
T ss_dssp             -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred             CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence                          0000        00011    1222335667999999999999976443   56776777999999


Q ss_pred             EEEeeCCCCc
Q 021871          166 LIVATGCTAS  175 (306)
Q Consensus       166 lila~G~~~~  175 (306)
                      ||+|+|....
T Consensus       158 vILAtGG~S~  167 (409)
T PF03486_consen  158 VILATGGKSY  167 (409)
T ss_dssp             EEE----SSS
T ss_pred             EEEecCCCCc
Confidence            9999997654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.22  E-value=2.2e-11  Score=113.21  Aligned_cols=104  Identities=20%  Similarity=0.248  Sum_probs=74.1

Q ss_pred             HHhhhcCCeEEEEcCCH--HHHHHHHHHHhCCCcEEEEecCCcccccc-------------cCHHHHHHHHHHHHHcCCE
Q 021871          201 ISSLEKAKKVVVVGGGY--IGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------FTPSLAQRYEQLYQQNGVK  265 (306)
Q Consensus       201 ~~~~~~~~~v~viG~g~--~a~e~a~~l~~~~~~v~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~gv~  265 (306)
                      .+....++++.++|++.  .+.+++..+...+.+++++.+...++...             ....+...+.+.+++.|++
T Consensus       151 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~  230 (574)
T PRK12842        151 ARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIP  230 (574)
T ss_pred             HhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCE
Confidence            33334567788999888  68888888887777766554443333210             1245777788888999999


Q ss_pred             EEcCceEEEEEeCCCCcEEEEEeCC--CC-EEecC-EEEEecCC
Q 021871          266 FVKGASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TVILLPYD  305 (306)
Q Consensus       266 i~~~~~v~~i~~~~~~~v~~v~~~~--G~-~i~~d-~vv~a~g~  305 (306)
                      ++.+++|+++.. +++++.+|...+  +. .+.++ .||+|||.
T Consensus       231 i~~~~~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg  273 (574)
T PRK12842        231 ILTGTPARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGG  273 (574)
T ss_pred             EEeCCEEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCC
Confidence            999999999986 467777777644  32 36785 79999984

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.19  E-value=9.8e-10  Score=99.65  Aligned_cols=56  Identities=16%  Similarity=0.278  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHH----cC--CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQ----NG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~----~g--v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++    .|  ++++++++|++|+..+++. ..|.+.+| ++.+|.||+|+|.
T Consensus       210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~-~~V~T~~G-~i~A~~VVvaAG~  271 (497)
T PTZ00383        210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSL-YKIHTNRG-EIRARFVVVSACG  271 (497)
T ss_pred             HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCe-EEEEECCC-EEEeCEEEECcCh
Confidence            34677788888888    77  8899999999999743443 36888887 7999999999984

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.19  E-value=1.5e-10  Score=102.22  Aligned_cols=38  Identities=24%  Similarity=0.324  Sum_probs=33.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ++|+|||||++||++|++|++++ ++.+|+|+|+++..+
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~-p~~~i~lfE~~~r~G   38 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAG-PDVEVTLFEADDRVG   38 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhC-CCCcEEEEecCCCCC
Confidence            37999999999999999999998 467999999987753

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.18  E-value=1.6e-09  Score=97.07  Aligned_cols=56  Identities=21%  Similarity=0.296  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      +..+...+.+.++++|++++.+++|++++..+++.+..|++.+| .+.+|.||+|+|
T Consensus       182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaag  237 (407)
T TIGR01373       182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVA  237 (407)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCC
Confidence            44566667788899999999999999997544566667888888 799999988876

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.17  E-value=7.4e-10  Score=100.59  Aligned_cols=54  Identities=22%  Similarity=0.326  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++|+.+++|++++.  ++.+ .|++++| .+.+|.||+|+|.
T Consensus       182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~~~-~v~t~~g-~v~A~~VV~Atga  235 (460)
T TIGR03329       182 PGLLVRGLRRVALELGVEIHENTPMTGLEE--GQPA-VVRTPDG-QVTADKVVLALNA  235 (460)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEee--CCce-EEEeCCc-EEECCEEEEcccc
Confidence            567778888999999999999999999984  3333 5888877 7999999999883

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.16  E-value=1.3e-09  Score=97.62  Aligned_cols=47  Identities=19%  Similarity=0.390  Sum_probs=38.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL  101 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~  101 (306)
                      +||+|||||++|+++|++|++.|.   +|+|+|++...++.......|++
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~---~V~vle~~~~~~~~as~~~~g~~   48 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY---QVTVFDRHRYAAMETSFANGGQL   48 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCCCcCcccccCCEE
Confidence            699999999999999999999998   99999999755544444444444

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.16  E-value=1.7e-09  Score=95.95  Aligned_cols=55  Identities=16%  Similarity=0.305  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|.+++. +++.+ .|.+.+| ++.+|.||+|+|.
T Consensus       144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~-~~~~~-~v~~~~~-~i~a~~vV~aaG~  198 (380)
T TIGR01377       144 AEKALRALQELAEAHGATVRDGTKVVEIEP-TELLV-TVKTTKG-SYQANKLVVTAGA  198 (380)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEEe-cCCeE-EEEeCCC-EEEeCEEEEecCc
Confidence            456777788888899999999999999986 45555 4777776 8999999999984

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.16  E-value=7e-10  Score=102.04  Aligned_cols=57  Identities=30%  Similarity=0.386  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ...+.+.+.+.+++.|++|+.+++|++|.. +++++.+|++.+|+++.+|.||+|++.
T Consensus       218 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~  274 (502)
T TIGR02734       218 TGALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADL  274 (502)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcH
Confidence            356788899999999999999999999997 456666899999989999999998863

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.15  E-value=8.7e-11  Score=107.00  Aligned_cols=55  Identities=24%  Similarity=0.413  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEec
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP  303 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~  303 (306)
                      ...+.+.+.+.+++.|++|+++++|++|.. ++|+.+++.+.+|+.+++|.||.+.
T Consensus       223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~  277 (487)
T COG1233         223 MGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNA  277 (487)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecC
Confidence            567889999999999999999999999997 5666667888888789999999864

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.15  E-value=8.4e-10  Score=99.11  Aligned_cols=56  Identities=27%  Similarity=0.385  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.++++|++++.+++|++++. .++.+..|++.+| ++.+|.||+|+|.
T Consensus       200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~t~~~-~~~a~~VV~a~G~  255 (416)
T PRK00711        200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLV-EGGRITGVQTGGG-VITADAYVVALGS  255 (416)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCEEEEEEeCCc-EEeCCEEEECCCc
Confidence            446777788888999999999999999986 4555556777765 8999999999984

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.14  E-value=4.9e-10  Score=106.15  Aligned_cols=55  Identities=20%  Similarity=0.230  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++ |++++.+++|++++. .++.+ .|.+.+|..+.+|.||+|+|.
T Consensus       407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~-~~~~~-~v~t~~g~~~~ad~VV~A~G~  461 (662)
T PRK01747        407 PAELCRALLALAGQ-QLTIHFGHEVARLER-EDDGW-QLDFAGGTLASAPVVVLANGH  461 (662)
T ss_pred             HHHHHHHHHHhccc-CcEEEeCCEeeEEEE-eCCEE-EEEECCCcEEECCEEEECCCC
Confidence            55778888888888 999999999999986 35555 488888877889999999985

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.14  E-value=6.5e-10  Score=100.72  Aligned_cols=89  Identities=15%  Similarity=0.136  Sum_probs=60.0

Q ss_pred             CHHHHHHHHHHHhCCCcEEEEecCCcc---cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC-CC--CcEEEEEeC
Q 021871          216 GYIGMEVAAAAVGWKLDTTIIFPENHL---LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SD--GRVAAVKLE  289 (306)
Q Consensus       216 g~~a~e~a~~l~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~--~~v~~v~~~  289 (306)
                      -.||.|+...+.+.-.++.-+.....+   ... ....+...+.+.++++||+++++++|+++..+ ++  ++|++|...
T Consensus       191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft~yn-qyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~  269 (576)
T PRK13977        191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYN-QYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLT  269 (576)
T ss_pred             hhHHHHHHHHHHHHHHhhccCCccccccCCCCC-chhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEE
Confidence            357888888886552121111111111   111 24678899999999999999999999998864 23  678888875


Q ss_pred             C-CC-----EEecCEEEEecCC
Q 021871          290 D-GS-----TIDADTVILLPYD  305 (306)
Q Consensus       290 ~-G~-----~i~~d~vv~a~g~  305 (306)
                      . |.     ..+.|.||+++|.
T Consensus       270 ~~~~~~~I~l~~~DlVivTnGs  291 (576)
T PRK13977        270 RNGKEETIDLTEDDLVFVTNGS  291 (576)
T ss_pred             eCCceeEEEecCCCEEEEeCCc
Confidence            3 32     3568999999985

>PRK06847 hypothetical protein; Provisional

Probab=99.12  E-value=2.8e-10  Score=100.74  Aligned_cols=123  Identities=21%  Similarity=0.252  Sum_probs=74.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcc---cc--------cc---------------ccC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL---TK--------GY---------------LFP  103 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~---~~--------~~---------------~~~  103 (306)
                      +++||+|||||++||++|..|++.|+   +|+|+|+.+........+   ..        |.               ++.
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGI---AVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD   79 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence            45799999999999999999999998   999999976421000000   00        00               000


Q ss_pred             -CCCCCCCC----------CCcccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEee
Q 021871          104 -LDKKPARL----------PGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT  170 (306)
Q Consensus       104 -~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~  170 (306)
                       .......+          +....+........+...+.+.++++++++++.+++....  .+.+.+|..+.+|.||.|+
T Consensus        80 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad  159 (375)
T PRK06847         80 PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD  159 (375)
T ss_pred             CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence             00000000          0000000001112233334557899999999999876543  5667788889999999999


Q ss_pred             CCCCc
Q 021871          171 GCTAS  175 (306)
Q Consensus       171 G~~~~  175 (306)
                      |....
T Consensus       160 G~~s~  164 (375)
T PRK06847        160 GLYSK  164 (375)
T ss_pred             CCCcc
Confidence            97654

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.11  E-value=3.4e-09  Score=93.91  Aligned_cols=55  Identities=18%  Similarity=0.267  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+.+.|++++.+++|++++. +++.+ .|++++| .+.+|.||+|+|.
T Consensus       148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~-~v~~~~g-~~~a~~vV~A~G~  202 (376)
T PRK11259        148 PELAIKAHLRLAREAGAELLFNEPVTAIEA-DGDGV-TVTTADG-TYEAKKLVVSAGA  202 (376)
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEe-eCCeE-EEEeCCC-EEEeeEEEEecCc
Confidence            456667777778889999999999999987 34444 5888887 8999999999984

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.10  E-value=2e-09  Score=94.97  Aligned_cols=51  Identities=20%  Similarity=0.355  Sum_probs=41.3

Q ss_pred             CHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+.++ |++++.+++|.+++.  +    .|++.+| .+.+|.||+|+|.
T Consensus       144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~  195 (365)
T TIGR03364       144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGA  195 (365)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCC
Confidence            556777777777765 999999999999974  2    4778877 5789999999984

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07233 hypothetical protein; Provisional

Probab=99.09  E-value=4.1e-10  Score=101.64  Aligned_cols=56  Identities=21%  Similarity=0.280  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ...+.+.+.+.+++.|++|+++++|++|+.+ ++.+..+. .+|+.+++|.||+|++.
T Consensus       197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~  252 (434)
T PRK07233        197 FATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPP  252 (434)
T ss_pred             HHHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCH
Confidence            4567888889999999999999999999974 45554444 56678999999999873

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.08  E-value=1.7e-09  Score=98.17  Aligned_cols=58  Identities=21%  Similarity=0.237  Sum_probs=48.3

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC-----EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~-----~i~~d~vv~a~g~  305 (306)
                      +..+.+.+.+.+++.|++|.++++|++|...+++++++|++.+|+     ++.+|.||+|++.
T Consensus       212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            355778888889889999999999999986567777788887765     7999999999863

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02612 phytoene desaturase

Probab=99.07  E-value=2.2e-09  Score=99.60  Aligned_cols=56  Identities=23%  Similarity=0.312  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ..+.+.+.+.+++.|++|+++++|++|+.++++.+.+|++.+|+.+.+|.||+|++
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p  363 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP  363 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence            56778888999889999999999999997667766678888898999999999986

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.06  E-value=4.1e-09  Score=93.90  Aligned_cols=55  Identities=25%  Similarity=0.318  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ..+.+.+.+.+++.|++++.+++|++++.+ ++.+ .|++++|+++.+|.||.|.|.
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~a~~vV~AdG~  167 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRV-RLRLDDGRRLEAALAIAADGA  167 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeE-EEEECCCCEEEeCEEEEecCC
Confidence            456667778888889999999999999864 4444 488888889999999999986

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.06  E-value=1.8e-09  Score=100.64  Aligned_cols=57  Identities=30%  Similarity=0.367  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC--CCC-EEec-CEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS-TIDA-DTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~--~G~-~i~~-d~vv~a~g~  305 (306)
                      ...+...+.+.+++.|++++.+++|+++.. +++++.+|...  ++. .+.+ +.||+|+|-
T Consensus       216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg  276 (581)
T PRK06134        216 GNALVARLLKSAEDLGVRIWESAPARELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGG  276 (581)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCC
Confidence            456778888999999999999999999875 46777777553  332 4788 999999984

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.05  E-value=4.5e-09  Score=95.63  Aligned_cols=57  Identities=19%  Similarity=0.347  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+++.| ++++++++|++++..+++.+ .+.+   .+|+  ++.+|.||+|+|.
T Consensus       182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg  244 (494)
T PRK05257        182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGG  244 (494)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCc
Confidence            4567778888888876 89999999999997556544 2433   3453  6999999999884

>PRK07208 hypothetical protein; Provisional

Probab=99.04  E-value=6.4e-10  Score=101.73  Aligned_cols=57  Identities=32%  Similarity=0.360  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe--CCCC--EEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS--TIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~--~~G~--~i~~d~vv~a~g  304 (306)
                      ...+.+.+.+.+++.|++|+++++|++|..++++.+..+..  .+|+  .+.+|.||+|++
T Consensus       217 ~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p  277 (479)
T PRK07208        217 PGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMP  277 (479)
T ss_pred             cchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCC
Confidence            45678888999999999999999999999855554434443  3453  588999999976

>PRK06834 hypothetical protein; Provisional

Probab=99.04  E-value=1.3e-09  Score=99.33  Aligned_cols=123  Identities=20%  Similarity=0.279  Sum_probs=74.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC---cccc---------ccc---cCCC---------
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTK---------GYL---FPLD---------  105 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~~~~---------~~~---~~~~---------  105 (306)
                      ..+||+||||||+|+++|..|++.|+   +|+|+|+.+......+   .+..         |.+   ....         
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~---~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~   78 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGV---DVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA   78 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence            45899999999999999999999998   9999999764221100   0000         000   0000         


Q ss_pred             CCCCCCCCccc-------ccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          106 KKPARLPGFHT-------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       106 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ....+...+..       +........+.+.+++.++++++++++.++..++.  .+.+.++..+++++||.|.|....
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~  157 (488)
T PRK06834         79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence            00000000000       00000011222334567899999999999876554  455567778999999999998764

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.04  E-value=6.8e-09  Score=94.35  Aligned_cols=57  Identities=25%  Similarity=0.308  Sum_probs=43.9

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEE---eCCCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~---~~~G~--~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.++++|++++++++|++++..+++.+ .+.   +.+|+  ++.+|.||+|+|.
T Consensus       177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~  238 (483)
T TIGR01320       177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGG  238 (483)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCc
Confidence            567788888889999999999999999987444443 233   23342  6899999999984

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.03  E-value=6e-09  Score=94.58  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=32.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ++|+|||||+|||+||+.|++.|. ..+|+|+|+++..+
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~-~~~V~vlEa~~~~G   38 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGP-DADITLLEASDRLG   38 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCC-CCCEEEEEcCCCCc
Confidence            479999999999999999999881 22999999988764

>PLN02463 lycopene beta cyclase

Probab=99.03  E-value=1.2e-09  Score=98.11  Aligned_cols=123  Identities=19%  Similarity=0.280  Sum_probs=73.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCc------cc-ccc---c-cCCCC--------CCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA------LT-KGY---L-FPLDK--------KPA  109 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~------~~-~~~---~-~~~~~--------~~~  109 (306)
                      ...+||+|||||+||+++|..|++.|+   +|+|+|+.+...+....      +. -+.   + ..+..        ...
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl---~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~  102 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGL---SVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKK  102 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCC---eEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCc
Confidence            346899999999999999999999998   99999997643322110      00 000   0 00000        000


Q ss_pred             CCC-CcccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          110 RLP-GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       110 ~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ... .+...........+.+.+.+.+++++ ..+|.+++..+.  .|.+++|..++++.||.|+|....
T Consensus       103 ~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        103 DLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             cccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence            000 00000000111223333455688886 458888876543  577888889999999999997754

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.02  E-value=1.3e-09  Score=97.10  Aligned_cols=122  Identities=21%  Similarity=0.288  Sum_probs=74.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCc---cccccc----cCCCC---CCCC-----CCCc
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---LTKGYL----FPLDK---KPAR-----LPGF  114 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~---~~~~~~----~~~~~---~~~~-----~~~~  114 (306)
                      +++||+||||||||++||+.|++.|.   +|+|+|+....++....   +....+    ..+..   ....     .+.-
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~---~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~   78 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGL---DVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGE   78 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCC---eEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCC
Confidence            46899999999999999999999997   99999998876543221   111111    11100   0000     0000


Q ss_pred             ccccC-----------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EE-EcCCCcEEecCcEEEeeCCCC
Q 021871          115 HTCVG-----------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TL-ITNSGKLLKYGSLIVATGCTA  174 (306)
Q Consensus       115 ~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v-~~~~g~~~~~~~lila~G~~~  174 (306)
                      .....           ....+.+....++.|.+++..+.+..+..++.  .+ ...++..++++++|.|.|...
T Consensus        79 ~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s  152 (396)
T COG0644          79 KVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS  152 (396)
T ss_pred             ceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence            00000           00011223344567999999999988876553  22 223335899999999999654

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.01  E-value=1.7e-09  Score=92.40  Aligned_cols=120  Identities=21%  Similarity=0.314  Sum_probs=71.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC--cccc-------------------ccccCCCCCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTK-------------------GYLFPLDKKPAR  110 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--~~~~-------------------~~~~~~~~~~~~  110 (306)
                      +||+|||||++|+++|+.|++.|.   +|+|+|+.........  .+..                   ..++........
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~---~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGL---RVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE   77 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence            599999999999999999999998   9999999865322100  0000                   000000000000


Q ss_pred             --CC--CcccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCC-CcEEecCcEEEeeCCCC
Q 021871          111 --LP--GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLIVATGCTA  174 (306)
Q Consensus       111 --~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~-g~~~~~~~lila~G~~~  174 (306)
                        .+  .............+.+.+.+.+++++.++++..+..+..  .+.+.+ +..+++|++|.|+|...
T Consensus        78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence              00  000000111122334445567899999999988765444  343343 45799999999999764

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.01  E-value=1.6e-09  Score=97.34  Aligned_cols=120  Identities=19%  Similarity=0.214  Sum_probs=71.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc--------cCC---CCCCC---------
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL--------FPL---DKKPA---------  109 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~--------~~~---~~~~~---------  109 (306)
                      .++||+||||||+|++||+.|++.|+   +|+|+|+.........  .++.+        ++.   ..+..         
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~---~V~llEr~~~~g~k~~--~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~   78 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGA---QVLVIERGNSAGAKNV--TGGRLYAHSLEHIIPGFADSAPVERLITHEKLA   78 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCC---eEEEEEcCCCCCCccc--ccceechhhHHHHhhhhhhcCcccceeeeeeEE
Confidence            46899999999999999999999999   9999999865432110  00000        000   00000         


Q ss_pred             ----------CCCCcc--c-------ccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCE--EEcCCCcEEecCcEEE
Q 021871          110 ----------RLPGFH--T-------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIV  168 (306)
Q Consensus       110 ----------~~~~~~--~-------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~--v~~~~g~~~~~~~lil  168 (306)
                                .++...  .       .........+.+.+++.|++++.+++|.++..++..  ....++..++++.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~  158 (428)
T PRK10157         79 FMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVIL  158 (428)
T ss_pred             EEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEE
Confidence                      000000  0       000000011223344578999999999988654432  2334566899999999


Q ss_pred             eeCCCC
Q 021871          169 ATGCTA  174 (306)
Q Consensus       169 a~G~~~  174 (306)
                      |+|...
T Consensus       159 A~G~~s  164 (428)
T PRK10157        159 ADGVNS  164 (428)
T ss_pred             EeCCCH
Confidence            999754

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.00  E-value=2.3e-09  Score=89.03  Aligned_cols=120  Identities=17%  Similarity=0.215  Sum_probs=71.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCC-----------CCCCCC----CCc
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD-----------KKPARL----PGF  114 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~----~~~  114 (306)
                      ..+||+|||||++||++|+.|++.|+   +|+|+||....+...  +..+..++..           .....+    .++
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~---~V~vlEk~~~~Ggg~--~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~   94 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGL---KVCVLERSLAFGGGS--WGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGY   94 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCccc--cCCCcceecccccchHHHHHHHCCCCeeeccCce
Confidence            36899999999999999999999998   999999987653110  0111111100           000000    000


Q ss_pred             ccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC-----EEEcC-----------CCcEEecCcEEEeeCCCC
Q 021871          115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-----TLITN-----------SGKLLKYGSLIVATGCTA  174 (306)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~-----~v~~~-----------~g~~~~~~~lila~G~~~  174 (306)
                      ...........+.....+.+++++.++.+.++..++.     -+.++           +...++++.+|.|||...
T Consensus        95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a  170 (254)
T TIGR00292        95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA  170 (254)
T ss_pred             EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence            0000011112333445567899998988988765332     12222           124789999999999664

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.00  E-value=1.9e-09  Score=89.87  Aligned_cols=121  Identities=15%  Similarity=0.178  Sum_probs=71.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCC--------------CCCCCC-CCc
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD--------------KKPARL-PGF  114 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~-~~~  114 (306)
                      ..+||+|||||++|++||++|++.|+   +|+|+|+....+-..  ...+.+++..              -..... +++
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~---~V~liEk~~~~Ggg~--~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~   98 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGL---KVAVFERKLSFGGGM--WGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGL   98 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCC---eEEEEecCCCCCCcc--ccCccccccccchHHHHHHHHHCCCCceeecCcc
Confidence            35899999999999999999999998   999999986543110  0111111100              000000 000


Q ss_pred             ccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC-E---EEcC-----------CCcEEecCcEEEeeCCCCc
Q 021871          115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-T---LITN-----------SGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~-~---v~~~-----------~g~~~~~~~lila~G~~~~  175 (306)
                      ...........+.+.+.+.+++++.++.|.++..++. .   +.+.           +...++++.+|+|+|....
T Consensus        99 ~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~  174 (257)
T PRK04176         99 YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE  174 (257)
T ss_pred             eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence            0000011112334445667999999988888764322 1   1111           2247999999999997644

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.00  E-value=2.7e-09  Score=98.96  Aligned_cols=98  Identities=23%  Similarity=0.232  Sum_probs=67.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHH-------HHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC
Q 021871          206 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  278 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~-------l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  278 (306)
                      .++.+.++|++...++.+..       +.+.+.++++....+.... .....+...+.+.+++.|++++++++++++.. 
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~-  236 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLL-GMGQALAAGLRIGLQRAGVPVLLNTPLTDLYV-  236 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcc-cCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence            35667788888888877653       3444445544333222221 14566788888999999999999999999986 


Q ss_pred             CCCcEEEEEeC-CCC--EEecC-EEEEecCC
Q 021871          279 SDGRVAAVKLE-DGS--TIDAD-TVILLPYD  305 (306)
Q Consensus       279 ~~~~v~~v~~~-~G~--~i~~d-~vv~a~g~  305 (306)
                      ++++|++|... +|+  .+.++ .||+|||-
T Consensus       237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG  267 (557)
T PRK07843        237 EDGRVTGVHAAESGEPQLIRARRGVILASGG  267 (557)
T ss_pred             eCCEEEEEEEEeCCcEEEEEeceeEEEccCC
Confidence            56777777664 443  47785 69999874

>PRK07190 hypothetical protein; Provisional

Probab=99.00  E-value=1.8e-09  Score=98.33  Aligned_cols=122  Identities=22%  Similarity=0.245  Sum_probs=73.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-CCCC-cccc---------ccc---------------cC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERP-ALTK---------GYL---------------FP  103 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~-~~~~---------~~~---------------~~  103 (306)
                      ..+||+||||||+||.+|..|++.|.   +|+|+|+.+... ..+. .+..         |.+               +.
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi---~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~   80 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCGL---NTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA   80 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCC---CEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence            45899999999999999999999998   999999986531 1000 0000         000               00


Q ss_pred             CCCCC-------CCCCC--c--ccccC-CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEe
Q 021871          104 LDKKP-------ARLPG--F--HTCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA  169 (306)
Q Consensus       104 ~~~~~-------~~~~~--~--~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila  169 (306)
                      .....       ..++.  .  ..... ......+.+.+.+.|++++++++|.++..+..  .+.+.++..+++++||.|
T Consensus        81 ~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgA  160 (487)
T PRK07190         81 NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGA  160 (487)
T ss_pred             CCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEEC
Confidence            00000       00000  0  00000 00011222345567899999999999976544  455567778999999999


Q ss_pred             eCCCC
Q 021871          170 TGCTA  174 (306)
Q Consensus       170 ~G~~~  174 (306)
                      .|...
T Consensus       161 DG~~S  165 (487)
T PRK07190        161 DGSRS  165 (487)
T ss_pred             CCCCH
Confidence            99764

>PRK06184 hypothetical protein; Provisional

Probab=98.98  E-value=2.3e-09  Score=98.52  Aligned_cols=122  Identities=18%  Similarity=0.214  Sum_probs=72.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCC-C--------------Cccc-----ccc------ccC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R--------------PALT-----KGY------LFP  103 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~--------------~~~~-----~~~------~~~  103 (306)
                      +.+||+||||||+||++|..|++.|+   +|+|+|+.+...-. +              .++.     .+.      .+.
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi---~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~   78 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGV---SFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR   78 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence            45899999999999999999999999   99999997653100 0              0000     000      000


Q ss_pred             CCCCCCC--C-------C--Ccc--ccc-CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEc---CCCcEEecC
Q 021871          104 LDKKPAR--L-------P--GFH--TCV-GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYG  164 (306)
Q Consensus       104 ~~~~~~~--~-------~--~~~--~~~-~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~---~~g~~~~~~  164 (306)
                      .......  +       +  .+.  ... .......+.+.+.+.++++++++++.+++.++.  .+.+   .++..+++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~  158 (502)
T PRK06184         79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR  158 (502)
T ss_pred             CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence            0000000  0       0  000  000 000111233345556899999999999876544  3444   455689999


Q ss_pred             cEEEeeCCCC
Q 021871          165 SLIVATGCTA  174 (306)
Q Consensus       165 ~lila~G~~~  174 (306)
                      +||.|.|...
T Consensus       159 ~vVgADG~~S  168 (502)
T PRK06184        159 YLVGADGGRS  168 (502)
T ss_pred             EEEECCCCch
Confidence            9999999765

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.98  E-value=9.3e-09  Score=93.67  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=33.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc----CCCCCcEEEeccCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH----GMADGRLCIVSKEAYAP   90 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~----g~~~~~V~vie~~~~~~   90 (306)
                      ++||+|||||++||++|++|.++    |+   +|+|+|+++..+
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~---~v~vlE~~~r~G   42 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPV---ELTLVEASDRVG   42 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCC---cEEEEEcCCcCc
Confidence            36999999999999999999998    77   999999998764

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.97  E-value=8e-09  Score=94.08  Aligned_cols=51  Identities=22%  Similarity=0.354  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      .+.+.+.+.+.+  ++|.++++|++|+..+ +.+ .|.+.+|+.+.+|.||+|++
T Consensus       227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~~-~v~~~~g~~~~ad~VI~a~p  277 (463)
T PRK12416        227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQG-DRY-EISFANHESIQADYVVLAAP  277 (463)
T ss_pred             HHHHHHHHhccc--ccEEcCCEEEEEEEcC-CEE-EEEECCCCEEEeCEEEECCC
Confidence            455555555543  6899999999999754 444 58888888899999999986

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.96  E-value=4.9e-08  Score=85.93  Aligned_cols=72  Identities=17%  Similarity=0.214  Sum_probs=56.2

Q ss_pred             CCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCC
Q 021871          230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILLPYD  305 (306)
Q Consensus       230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~  305 (306)
                      +..|..+-   ++-|+.....+.+.+.+.+++.|++++.+++|.+++. +++.+..|.+.++  ..+++|.+|+|+|.
T Consensus       247 g~~v~E~p---tlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGa  320 (419)
T TIGR03378       247 GLTLCELP---TMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGS  320 (419)
T ss_pred             CCCEEeCC---CCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCC
Confidence            45555443   3334444778889999999999999999999999986 5666767887776  47999999999984

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.95  E-value=3.1e-08  Score=91.70  Aligned_cols=57  Identities=16%  Similarity=0.145  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC---CC--CEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G--~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.++++|++++.+++|+++.. +++++.+|++.   +|  ..+.+|.||.|+|.
T Consensus       148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~  209 (546)
T PRK11101        148 PFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGI  209 (546)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCCh
Confidence            556777777888899999999999999986 45666677652   23  37999999999984

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.95  E-value=1.9e-08  Score=89.50  Aligned_cols=55  Identities=27%  Similarity=0.403  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.++++| ..+..++.+..++.. . ....|.+.+|. +.+|.||+|+|.
T Consensus       155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~  210 (387)
T COG0665         155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGA  210 (387)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCch
Confidence            4577888999999999 566668899999863 3 44579999985 999999999984

>PRK07045 putative monooxygenase; Reviewed

Probab=98.95  E-value=2.5e-08  Score=88.79  Aligned_cols=56  Identities=21%  Similarity=0.278  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHH-HcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          250 SLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       250 ~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .+.+.+.+.+. ..|++++++++|+.++.++++.+..|++++|+++.+|.||-|.|.
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~  163 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGA  163 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCC
Confidence            34455666664 458999999999999976677656788899999999999999885

>PRK10015 oxidoreductase; Provisional

Probab=98.94  E-value=3.8e-09  Score=94.90  Aligned_cols=122  Identities=20%  Similarity=0.288  Sum_probs=70.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC---ccccc---cccCCC--CCCC-C-CC-------
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTKG---YLFPLD--KKPA-R-LP-------  112 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~~~~~---~~~~~~--~~~~-~-~~-------  112 (306)
                      .++||+||||||||++||+.|++.|+   +|+|+|+.+..+....   .+...   .+.+..  ..+. . ..       
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~---~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~   80 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGL---DVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFL   80 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEE
Confidence            45899999999999999999999998   9999999876432110   00000   000000  0000 0 00       


Q ss_pred             --------Ccc------------cccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEE--EcCCCcEEecCcEEEee
Q 021871          113 --------GFH------------TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVAT  170 (306)
Q Consensus       113 --------~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v--~~~~g~~~~~~~lila~  170 (306)
                              .+.            .+......+.+.+.+++.|++++.+++|..+..++..+  ...++..+.++.+|+|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~Ad  160 (429)
T PRK10015         81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILAD  160 (429)
T ss_pred             eCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEcc
Confidence                    000            00000000012233455789999998998876544322  23345579999999999


Q ss_pred             CCCC
Q 021871          171 GCTA  174 (306)
Q Consensus       171 G~~~  174 (306)
                      |...
T Consensus       161 G~~s  164 (429)
T PRK10015        161 GVNS  164 (429)
T ss_pred             Ccch
Confidence            9653

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.93  E-value=4.6e-09  Score=93.95  Aligned_cols=122  Identities=18%  Similarity=0.245  Sum_probs=72.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcC--CCCCcEEEeccCCCCCCC---CC-cc-------c--cccc--------------
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHG--MADGRLCIVSKEAYAPYE---RP-AL-------T--KGYL--------------  101 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g--~~~~~V~vie~~~~~~~~---~~-~~-------~--~~~~--------------  101 (306)
                      ++||+|||||++||++|..|++.|  +   +|+|+|+.+.....   +. .+       .  -|.+              
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~---~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~   77 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHL---PVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMV   77 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCC---EEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEE
Confidence            479999999999999999999996  6   99999997542110   00 00       0  0000              


Q ss_pred             -cCCCC-CCC--CCCCcc-----------cccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecC
Q 021871          102 -FPLDK-KPA--RLPGFH-----------TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG  164 (306)
Q Consensus       102 -~~~~~-~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~  164 (306)
                       ..... ...  ....+.           .+........+.+.+.+.+++++.+++|..++.+..  .+.+.++..+.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad  157 (403)
T PRK07333         78 ITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEAR  157 (403)
T ss_pred             EEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeC
Confidence             00000 000  000000           000011112233334556899999999999876544  4666778889999


Q ss_pred             cEEEeeCCCCc
Q 021871          165 SLIVATGCTAS  175 (306)
Q Consensus       165 ~lila~G~~~~  175 (306)
                      .||.|.|....
T Consensus       158 ~vI~AdG~~S~  168 (403)
T PRK07333        158 LLVAADGARSK  168 (403)
T ss_pred             EEEEcCCCChH
Confidence            99999997644

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.93  E-value=8.2e-08  Score=85.72  Aligned_cols=54  Identities=15%  Similarity=0.110  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          250 SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       250 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .+.+.+.+.+.+. +++++.+++|++++.+ ++.+ .+.+.+|+++.+|.||.|.|.
T Consensus       110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vV~AdG~  164 (396)
T PRK08163        110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGV-TVFDQQGNRWTGDALIGCDGV  164 (396)
T ss_pred             HHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCce-EEEEcCCCEEecCEEEECCCc
Confidence            3555566666655 5999999999999864 4444 478888889999999999985

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.92  E-value=3.3e-09  Score=83.14  Aligned_cols=48  Identities=23%  Similarity=0.359  Sum_probs=38.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP  103 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~  103 (306)
                      ..||+||||||+||+||++|++.|.   +|+|+|++..++  ...+.+|++|+
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~---kV~i~E~~ls~G--GG~w~GGmlf~   77 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGL---KVAIFERKLSFG--GGIWGGGMLFN   77 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCc---eEEEEEeecccC--Ccccccccccc
Confidence            4699999999999999999999998   999999987653  22334455544

>PRK07236 hypothetical protein; Provisional

Probab=98.92  E-value=8.9e-09  Score=91.56  Aligned_cols=124  Identities=12%  Similarity=0.104  Sum_probs=72.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC-cc--c-ccc--cc--CCCCC-CCCCCC----cc
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-AL--T-KGY--LF--PLDKK-PARLPG----FH  115 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~~--~-~~~--~~--~~~~~-~~~~~~----~~  115 (306)
                      |+..+|+|||||++||++|..|++.|+   +|+|+|+.+....... .+  . .+.  +.  ..... ....+.    +.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~   80 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGW---DVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYL   80 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEE
Confidence            556899999999999999999999998   9999999864211100 00  0 000  00  00000 000000    00


Q ss_pred             cccCC-----------CCCcCChhHHhh--cCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          116 TCVGS-----------GGERQTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       116 ~~~~~-----------~~~~~~~~~~~~--~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ...+.           .....+.+.+.+  .+++++++++|+++..++.  .+.+++|+.+++|.||.|-|....
T Consensus        81 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236         81 DRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             eCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence            00000           000111122221  1356888999999976544  567788889999999999996543

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.92  E-value=3.9e-08  Score=89.07  Aligned_cols=57  Identities=19%  Similarity=0.180  Sum_probs=41.6

Q ss_pred             CHHHHHHHHHHHH-HcCCEEEcCceEEEEEeCCCCcEEEEE---eCCCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~v~~v~---~~~G~--~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+. ..|++++++++|+.++..+++.+ .+.   +.+|+  ++++|.||+|.|.
T Consensus       183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGa  245 (497)
T PRK13339        183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGG  245 (497)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCc
Confidence            4456677777775 45999999999999987535554 243   34453  6899999999985

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.91  E-value=3.2e-08  Score=88.00  Aligned_cols=56  Identities=25%  Similarity=0.281  Sum_probs=44.0

Q ss_pred             CHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCCCcEEEEEeC-CCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~v~~v~~~-~G~~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+.+.+ |+++.+++|+.++.+ ++.+. ++++ +|+++.+|.+|-|=|.
T Consensus       103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~-v~l~~dG~~~~a~llVgADG~  160 (387)
T COG0654         103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVT-VTLSFDGETLDADLLVGADGA  160 (387)
T ss_pred             hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceE-EEEcCCCcEEecCEEEECCCC
Confidence            4456666777777665 999999999999974 45553 7777 9999999999998774

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.90  E-value=2.4e-09  Score=96.82  Aligned_cols=40  Identities=20%  Similarity=0.399  Sum_probs=36.6

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      .+++++|+|||||+|||+||++|.+.|+   +|+|+|.++..+
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdRvG   51 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDRVG   51 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCCcC
Confidence            4567899999999999999999999999   899999988864

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.90  E-value=1.2e-08  Score=92.78  Aligned_cols=58  Identities=19%  Similarity=0.247  Sum_probs=44.7

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC--CC--cEEEEEeCCC---CEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~--~v~~v~~~~G---~~i~~d~vv~a~g~  305 (306)
                      ..-+.+.+.+.++++|++|+++++|++|+..+  ++  ++.+|.+.+|   +.+.+|.||+|++.
T Consensus       218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~  282 (474)
T TIGR02732       218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDV  282 (474)
T ss_pred             chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCCh
Confidence            33456778899999999999999999998633  23  3667777554   45899999999873

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.88  E-value=1.1e-08  Score=91.11  Aligned_cols=123  Identities=16%  Similarity=0.296  Sum_probs=71.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCc--------cc---------cccc-----------
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA--------LT---------KGYL-----------  101 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~--------~~---------~~~~-----------  101 (306)
                      +.+||+|||||++|+++|..|++.|+   +|+|+|+.+...+....        +.         -|.+           
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~---~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~   80 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGF---SVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY   80 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCC---EEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence            45899999999999999999999998   99999997532111000        00         0000           


Q ss_pred             -----cCCCCCC-------CCCCCcccccC-CCCCcCChhHHhhc-CeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCc
Q 021871          102 -----FPLDKKP-------ARLPGFHTCVG-SGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS  165 (306)
Q Consensus       102 -----~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~-~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~  165 (306)
                           +.+....       ...+.+..... ......+.+.+.+. +++++.++++..+..++.  .+.++++..+++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~  160 (391)
T PRK08020         81 RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKL  160 (391)
T ss_pred             ceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCE
Confidence                 0000000       00000000000 00001111222334 888888999998865443  56667787899999


Q ss_pred             EEEeeCCCCc
Q 021871          166 LIVATGCTAS  175 (306)
Q Consensus       166 lila~G~~~~  175 (306)
                      ||.|.|....
T Consensus       161 vI~AdG~~S~  170 (391)
T PRK08020        161 VIGADGANSQ  170 (391)
T ss_pred             EEEeCCCCch
Confidence            9999997653

>PRK09126 hypothetical protein; Provisional

Probab=98.88  E-value=5.2e-09  Score=93.26  Aligned_cols=122  Identities=22%  Similarity=0.371  Sum_probs=72.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC---c----c-cc--------ccc---c-----C--
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---A----L-TK--------GYL---F-----P--  103 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~----~-~~--------~~~---~-----~--  103 (306)
                      +.+||+|||||++|+++|..|++.|+   +|+|+|+.+......+   .    + +.        |..   .     +  
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~   78 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGL---KVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLR   78 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccc
Confidence            46899999999999999999999999   9999999864211000   0    0 00        000   0     0  


Q ss_pred             -----CCCCCCCCCCcccc-cCCCCC------cCCh----hHH-hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecC
Q 021871          104 -----LDKKPARLPGFHTC-VGSGGE------RQTP----EWY-KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG  164 (306)
Q Consensus       104 -----~~~~~~~~~~~~~~-~~~~~~------~~~~----~~~-~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~  164 (306)
                           .......+ .+... ......      ..+.    +.+ +..+++++.++++.+++.+..  .+.++++..+++|
T Consensus        79 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~  157 (392)
T PRK09126         79 DAKVLNGRSPFAL-TFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTAR  157 (392)
T ss_pred             eEEEEcCCCCcee-EeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeC
Confidence                 00000000 00000 000000      0011    111 235789999999999876543  5667788899999


Q ss_pred             cEEEeeCCCCc
Q 021871          165 SLIVATGCTAS  175 (306)
Q Consensus       165 ~lila~G~~~~  175 (306)
                      ++|.|.|....
T Consensus       158 ~vI~AdG~~S~  168 (392)
T PRK09126        158 LLVAADSRFSA  168 (392)
T ss_pred             EEEEeCCCCch
Confidence            99999997644

>PLN02576 protoporphyrinogen oxidase

Probab=98.88  E-value=7.6e-08  Score=88.50  Aligned_cols=38  Identities=16%  Similarity=0.306  Sum_probs=34.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~~~~   90 (306)
                      ..+||+|||||++||++|++|.+. |+   +|+|+|+++..+
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~---~v~vlEa~~rvG   49 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGV---NVLVTEARDRVG   49 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCC---CEEEEecCCCCC
Confidence            456999999999999999999999 88   999999998764

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.87  E-value=2.1e-08  Score=92.01  Aligned_cols=56  Identities=20%  Similarity=0.342  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-----CEEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-----~~i~~d~vv~a~g  304 (306)
                      ...+.+.+.+.+++.|++|+++++|++|.. +++++.+|.+.+|     +++.+|.||++++
T Consensus       231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~  291 (492)
T TIGR02733       231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVANLP  291 (492)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEECCC
Confidence            567888999999999999999999999997 4555556666554     5789999999876

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.87  E-value=8.2e-09  Score=91.88  Aligned_cols=118  Identities=14%  Similarity=0.219  Sum_probs=69.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC-cc-ccc--------cc-cCCCC-CCCCCCCcc-----
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-AL-TKG--------YL-FPLDK-KPARLPGFH-----  115 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~~-~~~--------~~-~~~~~-~~~~~~~~~-----  115 (306)
                      ||+|||||++|+++|+.|++.|+   +|+|+|+.+..+.... .. ...        .. ..+.. .....+...     
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~---~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGL---RVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT   77 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence            79999999999999999999998   9999999865432110 00 000        00 00000 000000000     


Q ss_pred             ---cccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCC-C--CEEEcCCCcEEecCcEEEeeCCCC
Q 021871          116 ---TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITNSGKLLKYGSLIVATGCTA  174 (306)
Q Consensus       116 ---~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~-~--~~v~~~~g~~~~~~~lila~G~~~  174 (306)
                         .+........+.+.+.+.+++++ ..++..+... .  ..+.++++..++++.||.|+|...
T Consensus        78 ~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        78 AYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             ceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence               00000111222333455678775 5578877654 2  356777777899999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.87  E-value=1.6e-07  Score=85.73  Aligned_cols=57  Identities=25%  Similarity=0.328  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC--CC--CEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~--~G--~~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+++.|++++.+++|+++.. +++++.+|...  +|  ..+.++.||+|||-
T Consensus       130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg  190 (466)
T PRK08274        130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGG  190 (466)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence            356777888888999999999999999986 56777777763  33  35889999999983

>PRK08244 hypothetical protein; Provisional

Probab=98.86  E-value=1e-08  Score=94.11  Aligned_cols=120  Identities=18%  Similarity=0.327  Sum_probs=70.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC-CC--------------Ccc-----------ccccccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ER--------------PAL-----------TKGYLFPL  104 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-~~--------------~~~-----------~~~~~~~~  104 (306)
                      .+||+||||||+||++|..|++.|+   +|+|+|+.+.... .+              .++           ....+...
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~   78 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGV---KTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL   78 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence            4799999999999999999999999   9999999765310 00              000           00000000


Q ss_pred             CCCCCCCC------CcccccC-CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcC--CC-cEEecCcEEEeeCC
Q 021871          105 DKKPARLP------GFHTCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITN--SG-KLLKYGSLIVATGC  172 (306)
Q Consensus       105 ~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~--~g-~~~~~~~lila~G~  172 (306)
                      . ...++.      .+..... ......+.+.+++.++++++++++.++..++.  .+.+.  ++ ..+++|++|.|.|.
T Consensus        79 ~-~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~  157 (493)
T PRK08244         79 D-TRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGA  157 (493)
T ss_pred             c-ccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCC
Confidence            0 000000      0000000 00111222334456899999999999876554  33332  45 47999999999997


Q ss_pred             CC
Q 021871          173 TA  174 (306)
Q Consensus       173 ~~  174 (306)
                      ..
T Consensus       158 ~S  159 (493)
T PRK08244        158 GS  159 (493)
T ss_pred             Ch
Confidence            65

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.85  E-value=1.2e-08  Score=94.62  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=34.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +..+||+|||||++||++|..|++.|+   +|+|+|+...
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~---~v~v~Er~~~   44 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGV---RVLVLERWPT   44 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence            456899999999999999999999998   9999999865

>TIGR02730 carot_isom carotene isomerase

Probab=98.85  E-value=1.1e-07  Score=87.24  Aligned_cols=56  Identities=20%  Similarity=0.291  Sum_probs=49.5

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ...+.+.+.+.+++.|++|+.+++|++|.. +++++.+|++.+|+++++|.||+|++
T Consensus       228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~  283 (493)
T TIGR02730       228 VGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNAT  283 (493)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCC
Confidence            356788899999999999999999999987 46777799999998999999999876

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.85  E-value=8.2e-09  Score=69.96  Aligned_cols=78  Identities=17%  Similarity=0.341  Sum_probs=59.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhh
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (306)
                      +|+|||||+.|+.+|..|++.|.   +|+++++.+... .  .+..                      +....+.+.+++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~---~vtli~~~~~~~-~--~~~~----------------------~~~~~~~~~l~~   52 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK---EVTLIERSDRLL-P--GFDP----------------------DAAKILEEYLRK   52 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS---EEEEEESSSSSS-T--TSSH----------------------HHHHHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc---EEEEEeccchhh-h--hcCH----------------------HHHHHHHHHHHH
Confidence            58999999999999999999997   999999987742 1  0000                      002456777888


Q ss_pred             cCeEEEeCCcEEEEeCCCCE--EEcCCC
Q 021871          133 KGIEMIYQDPVTSIDIEKQT--LITNSG  158 (306)
Q Consensus       133 ~~v~~~~~~~v~~v~~~~~~--v~~~~g  158 (306)
                      .++++++++.+..+..+...  +.++||
T Consensus        53 ~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   53 RGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            99999999999999876542  555443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.84  E-value=9.4e-09  Score=90.82  Aligned_cols=118  Identities=17%  Similarity=0.210  Sum_probs=68.9

Q ss_pred             cEEEEcCChHHHHHHHHH--HHcCCCCCcEEEeccCCCCCCCCCccccccccC------------CCCCCCCCCCccccc
Q 021871           53 EFVIVGGGNAAGYAARTF--VEHGMADGRLCIVSKEAYAPYERPALTKGYLFP------------LDKKPARLPGFHTCV  118 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L--~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~  118 (306)
                      ||+|||||+||+++|++|  ++.|.   +|+|+|+.....+.... ..+++..            |.......+......
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~---~Vllid~~~~~~~~~~~-tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~   76 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGL---SVLLIDPKPKPPWPNDR-TWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL   76 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCC---EEEEEcCCccccccCCc-ccccccccccchHHHHheecCceEEEeCCCceEE
Confidence            899999999999999999  55555   99999998765332211 1111100            000000001111000


Q ss_pred             CC---------CCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          119 GS---------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       119 ~~---------~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ..         .....+.+.+...++ ...+.+|.+|+....  .+.+++|..++++.|+-|.|....
T Consensus        77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   77 IDYPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             cccceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence            00         111111222222243 456789999987765  678889989999999999995543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PLN02697 lycopene epsilon cyclase

Probab=98.84  E-value=1.1e-08  Score=93.45  Aligned_cols=121  Identities=14%  Similarity=0.186  Sum_probs=69.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCC----Cccc-cc---cc-cCCCCCCCCCCCcccc-cCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALT-KG---YL-FPLDKKPARLPGFHTC-VGS  120 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~----~~~~-~~---~~-~~~~~~~~~~~~~~~~-~~~  120 (306)
                      .+||+|||||++|+++|..|++.|+   +|+++|+.....-..    ..+. -+   ++ ..|.......+..... ...
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl---~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~  184 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGL---NVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGR  184 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCC---cEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccC
Confidence            5899999999999999999999998   999999853221000    0000 00   00 0000000000000000 000


Q ss_pred             --------CCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--E-EEcCCCcEEecCcEEEeeCCCCc
Q 021871          121 --------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       121 --------~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~-v~~~~g~~~~~~~lila~G~~~~  175 (306)
                              .....+.+.+.+.++++ .+++|..+..+..  . +.+.++..+.++.||.|+|....
T Consensus       185 ~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~  249 (529)
T PLN02697        185 AYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG  249 (529)
T ss_pred             cccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence                    00112223334568887 4678888875433  2 34567778999999999998763

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.83  E-value=1.3e-08  Score=90.55  Aligned_cols=37  Identities=24%  Similarity=0.442  Sum_probs=33.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      +.+||+|||||++|+++|+.|++.|+   +|+|+|+....
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~   40 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGL---RVALLAPRAPP   40 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCc
Confidence            35799999999999999999999998   99999998663

>PRK08013 oxidoreductase; Provisional

Probab=98.83  E-value=1.1e-08  Score=91.30  Aligned_cols=123  Identities=15%  Similarity=0.225  Sum_probs=71.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCC--C---C---cccc---------ccccCCCCC-CCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE--R---P---ALTK---------GYLFPLDKK-PARL  111 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~--~---~---~~~~---------~~~~~~~~~-~~~~  111 (306)
                      +.+||+||||||+|+++|..|++.|+   +|+|+|+.+.....  .   .   .+..         |.+-..... ...+
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~---~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~   78 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGL---RVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCY   78 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCC---EEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccc
Confidence            45899999999999999999999999   99999997652110  0   0   0000         000000000 0000


Q ss_pred             CCc--------ccc-c-----CCCC----------CcCChhHHhhc-CeEEEeCCcEEEEeCCCC--EEEcCCCcEEecC
Q 021871          112 PGF--------HTC-V-----GSGG----------ERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG  164 (306)
Q Consensus       112 ~~~--------~~~-~-----~~~~----------~~~~~~~~~~~-~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~  164 (306)
                      ..+        ... .     +...          ...+.+.+.+. ++++++++++..++.++.  .+.+.+|..+++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~  158 (400)
T PRK08013         79 HGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR  158 (400)
T ss_pred             cEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence            000        000 0     0000          00111112333 689999999999866543  5666788899999


Q ss_pred             cEEEeeCCCCc
Q 021871          165 SLIVATGCTAS  175 (306)
Q Consensus       165 ~lila~G~~~~  175 (306)
                      +||-|.|....
T Consensus       159 lvVgADG~~S~  169 (400)
T PRK08013        159 LVVGADGANSW  169 (400)
T ss_pred             EEEEeCCCCcH
Confidence            99999997643

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.83  E-value=1.1e-08  Score=91.87  Aligned_cols=57  Identities=30%  Similarity=0.409  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G~--~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+++.|++|+.+++++++.. ++++|.+|...   +|+  .+.++.||+|||-
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG  201 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGG  201 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCc
Confidence            456778899999999999999999999987 57788898887   444  5789999999984

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PLN02487 zeta-carotene desaturase

Probab=98.83  E-value=2.1e-08  Score=92.41  Aligned_cols=58  Identities=16%  Similarity=0.184  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC--CC--cEEEEEe---CCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKL---EDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~--~v~~v~~---~~G~~i~~d~vv~a~g~  305 (306)
                      ...+.+.+.+.++++|++|++++.|++|+.+.  ++  ++.+|++   .+++.+.+|.||+|++.
T Consensus       294 ~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~  358 (569)
T PLN02487        294 DVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDV  358 (569)
T ss_pred             hHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCH
Confidence            44588999999999999999999999998742  33  3678888   34457899999999874

>TIGR00275 flavoprotein, HI0933 family

Probab=98.83  E-value=5.1e-08  Score=86.88  Aligned_cols=79  Identities=15%  Similarity=0.189  Sum_probs=54.1

Q ss_pred             HHHHHhCCCcEEEEecCCcccc-cccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEE
Q 021871          223 AAAAVGWKLDTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL  301 (306)
Q Consensus       223 a~~l~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~  301 (306)
                      ...+.+.+..++....+ +..+ ......+.+.+.+.+++.|++++.+++|+++.. +++.+ .+.+ +++.+.+|.||+
T Consensus        79 ~~~~~~~Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~-~v~~-~~~~i~ad~VIl  154 (400)
T TIGR00275        79 IDFFESLGLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKK-DDNGF-GVET-SGGEYEADKVIL  154 (400)
T ss_pred             HHHHHHcCCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEe-cCCeE-EEEE-CCcEEEcCEEEE
Confidence            34444455555543322 2222 112467888899999999999999999999986 34443 5666 456899999999


Q ss_pred             ecCC
Q 021871          302 LPYD  305 (306)
Q Consensus       302 a~g~  305 (306)
                      |+|.
T Consensus       155 AtG~  158 (400)
T TIGR00275       155 ATGG  158 (400)
T ss_pred             CCCC
Confidence            9985

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PLN02268 probable polyamine oxidase

Probab=98.82  E-value=6.6e-08  Score=87.39  Aligned_cols=36  Identities=19%  Similarity=0.378  Sum_probs=33.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      .+|+|||||+|||+||+.|.+.|+   +|+|+|+++..+
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~---~v~vlEa~~r~G   36 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASF---KVTLLESRDRIG   36 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCC
Confidence            489999999999999999999998   999999998875

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.82  E-value=2.3e-08  Score=89.01  Aligned_cols=37  Identities=27%  Similarity=0.459  Sum_probs=33.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++.+||+|||||++|+++|..|++.|+   +|+|+|+.+.
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~---~v~liE~~~~   41 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGA---SVALVAPEPP   41 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCC---eEEEEeCCCC
Confidence            456899999999999999999999998   9999999864

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.81  E-value=3.2e-07  Score=79.74  Aligned_cols=58  Identities=26%  Similarity=0.435  Sum_probs=52.1

Q ss_pred             cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          247 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       247 ~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ..+.+...+.+.+++.|++++++++|..|+. +++.+..|.+++|.++++|.||+|+|.
T Consensus       171 ~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Gr  228 (486)
T COG2509         171 ILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGR  228 (486)
T ss_pred             chHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCc
Confidence            5678889999999999999999999999997 555566899999999999999999996

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.81  E-value=6.9e-08  Score=74.36  Aligned_cols=34  Identities=12%  Similarity=0.308  Sum_probs=29.6

Q ss_pred             EEEcCChHHHHHHHHHHHcC--CCCCcEEEeccCCC
Q 021871           55 VIVGGGNAAGYAARTFVEHG--MADGRLCIVSKEAY   88 (306)
Q Consensus        55 vIIGgG~aGl~aA~~L~~~g--~~~~~V~vie~~~~   88 (306)
                      +|||||++|++++.+|.++.  ....+|+|+|+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            69999999999999999984  45679999999654

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.80  E-value=1.5e-08  Score=90.79  Aligned_cols=122  Identities=18%  Similarity=0.283  Sum_probs=71.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC--------CCC-CC-ccc-ccc--c-----cCC--------
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA--------PYE-RP-ALT-KGY--L-----FPL--------  104 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~--------~~~-~~-~~~-~~~--~-----~~~--------  104 (306)
                      .+||+|||||++|+++|..|++.|+   +|+|+|+.+..        .+. +. .+. .+.  +     ++.        
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~   78 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGL---EVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP   78 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCC---EEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence            4799999999999999999999998   99999997621        000 00 000 000  0     000        


Q ss_pred             -------CCCCCCCCCcccc-cC-C---------CCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecC
Q 021871          105 -------DKKPARLPGFHTC-VG-S---------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG  164 (306)
Q Consensus       105 -------~~~~~~~~~~~~~-~~-~---------~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~  164 (306)
                             +........|... .. .         .....+.+.+.+.+++++.++++.+++....  .+.+.+|..+++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~  158 (405)
T PRK05714         79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP  158 (405)
T ss_pred             ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence                   0000000000000 00 0         0000112223446889999999999876543  5667788889999


Q ss_pred             cEEEeeCCCCc
Q 021871          165 SLIVATGCTAS  175 (306)
Q Consensus       165 ~lila~G~~~~  175 (306)
                      .||.|.|....
T Consensus       159 ~vVgAdG~~S~  169 (405)
T PRK05714        159 LVVAADGANSA  169 (405)
T ss_pred             EEEEecCCCch
Confidence            99999997653

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.80  E-value=1.6e-08  Score=90.79  Aligned_cols=36  Identities=22%  Similarity=0.438  Sum_probs=33.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      .+||+|||||++|+++|..|++.|+   +|+|+|+.+..
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~   53 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGL---RIALIEAQPAE   53 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCC---EEEEEecCCcc
Confidence            5899999999999999999999999   99999998653

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.79  E-value=1.1e-07  Score=85.09  Aligned_cols=57  Identities=23%  Similarity=0.355  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ...+.+.+.+.++..|.+++++++|++|..++++++.+|++.+|+++.++.||+.+.
T Consensus       231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s  287 (443)
T PTZ00363        231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS  287 (443)
T ss_pred             HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence            557888899999999999999999999987556777789999999999999998654

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.79  E-value=1.5e-07  Score=86.47  Aligned_cols=55  Identities=20%  Similarity=0.311  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe--CCCC--EEecCEEEEecC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS--TIDADTVILLPY  304 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~--~~G~--~i~~d~vv~a~g  304 (306)
                      ..+.+.+.+.+++.|++++++++++++.. +++++.+|..  .+|+  .+.+|.||+|+|
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG  248 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTG  248 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence            45667778888899999999999999986 5677766665  3333  588999999998

>PRK05868 hypothetical protein; Validated

Probab=98.79  E-value=2.7e-08  Score=87.87  Aligned_cols=122  Identities=16%  Similarity=0.194  Sum_probs=71.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC---------------ccc----------ccc-ccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALT----------KGY-LFPL  104 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---------------~~~----------~~~-~~~~  104 (306)
                      ++||+|||||++|+++|..|++.|+   +|+|+|+.+.......               ++.          .+. +...
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~   77 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGY---SVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR   77 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC
Confidence            3699999999999999999999999   9999999865321000               000          000 0000


Q ss_pred             CCCC-CCCCC---cccccCCCC----CcCChhHHh---hcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeC
Q 021871          105 DKKP-ARLPG---FHTCVGSGG----ERQTPEWYK---EKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG  171 (306)
Q Consensus       105 ~~~~-~~~~~---~~~~~~~~~----~~~~~~~~~---~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G  171 (306)
                      .... .....   .........    ...+.+.+.   ..++++++++++..++.+..  .+.++++.++++|.||-|-|
T Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG  157 (372)
T PRK05868         78 DGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG  157 (372)
T ss_pred             CCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence            0000 00000   000000000    001122222   25788999999999876544  56778888999999999999


Q ss_pred             CCCc
Q 021871          172 CTAS  175 (306)
Q Consensus       172 ~~~~  175 (306)
                      ....
T Consensus       158 ~~S~  161 (372)
T PRK05868        158 LHSN  161 (372)
T ss_pred             CCch
Confidence            6643

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.79  E-value=1.7e-07  Score=78.53  Aligned_cols=65  Identities=14%  Similarity=0.097  Sum_probs=45.3

Q ss_pred             EecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      +...+.+.-  ........+++....-.-+|.++++|..+..-++|++  +...+|+.-.+|.||+||-
T Consensus       206 l~~rp~wrt--V~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth  270 (447)
T COG2907         206 LPKRPTWRT--VAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATH  270 (447)
T ss_pred             cCCCCceeE--cccchHHHHHHHhccccceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecC
Confidence            444444432  3333444455555555566999999999998888875  6677798899999999874

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.79  E-value=3.4e-08  Score=91.82  Aligned_cols=38  Identities=16%  Similarity=0.309  Sum_probs=34.5

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ....+||+|||||++||++|..|++.|+   +|+|+|+.+.
T Consensus        20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viE~~~~   57 (547)
T PRK08132         20 DPARHPVVVVGAGPVGLALAIDLAQQGV---PVVLLDDDDT   57 (547)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence            3456899999999999999999999998   9999999874

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.79  E-value=2.1e-08  Score=89.07  Aligned_cols=122  Identities=14%  Similarity=0.267  Sum_probs=71.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC---c-----c-cccc-------ccCCC-C---CCC-
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---A-----L-TKGY-------LFPLD-K---KPA-  109 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~-----~-~~~~-------~~~~~-~---~~~-  109 (306)
                      .+||+|||||++|+++|..|++.|+   +|+|+|+.+...+...   .     + +.+.       ++... .   .+. 
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~---~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~   79 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGR---SVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK   79 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCC---cEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence            4799999999999999999999999   9999998752111100   0     0 0000       00000 0   000 


Q ss_pred             C-----CCC-cccccCCC----C--C----cCCh----hHHhh-cCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcE
Q 021871          110 R-----LPG-FHTCVGSG----G--E----RQTP----EWYKE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL  166 (306)
Q Consensus       110 ~-----~~~-~~~~~~~~----~--~----~~~~----~~~~~-~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~l  166 (306)
                      .     ... ........    .  +    ..+.    +.+.+ .+++++.++++.+++.+..  .+.+++|..+++|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv  159 (384)
T PRK08849         80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV  159 (384)
T ss_pred             eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence            0     000 00000000    0  0    0011    11122 3688999999999876443  677888889999999


Q ss_pred             EEeeCCCCc
Q 021871          167 IVATGCTAS  175 (306)
Q Consensus       167 ila~G~~~~  175 (306)
                      |.|.|....
T Consensus       160 IgADG~~S~  168 (384)
T PRK08849        160 IGADGANSQ  168 (384)
T ss_pred             EEecCCCch
Confidence            999997654

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.79  E-value=1.3e-07  Score=80.91  Aligned_cols=94  Identities=24%  Similarity=0.326  Sum_probs=75.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc---cc--------cc----ccCHHHHHHHHHHHHHcCCEEEcCceEE
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------QR----LFTPSLAQRYEQLYQQNGVKFVKGASIK  273 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~---~~--------~~----~~~~~~~~~~~~~~~~~gv~i~~~~~v~  273 (306)
                      +++|||+|+.|+..|..|.+.+.+|+++.+.+.   +.        +.    ..+..+...+.+.+++.|+++++ ++|+
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            589999999999999999999999999997651   11        11    12356778888889999999999 7999


Q ss_pred             EEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          274 NLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       274 ~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +++. +++.+ .|.+.+|.++.+|.+|+|||.
T Consensus        81 ~v~~-~~~~~-~v~~~~~~~~~~d~liiAtG~  110 (300)
T TIGR01292        81 KVDL-SDRPF-KVKTGDGKEYTAKAVIIATGA  110 (300)
T ss_pred             EEEe-cCCee-EEEeCCCCEEEeCEEEECCCC
Confidence            9996 34433 577788889999999999996

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK07588 hypothetical protein; Provisional

Probab=98.76  E-value=6e-08  Score=86.41  Aligned_cols=121  Identities=17%  Similarity=0.229  Sum_probs=70.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC---cccc--------ccc-------cCC---------
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTK--------GYL-------FPL---------  104 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~~~~--------~~~-------~~~---------  104 (306)
                      .||+|||||++||++|..|++.|+   +|+|+|+.+...-...   ....        |.+       ...         
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~   77 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGH---EPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT   77 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC---ceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence            389999999999999999999998   9999999865311000   0000        000       000         


Q ss_pred             CCCCCCCC--CcccccCCCCCc----CChhHH---hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCC
Q 021871          105 DKKPARLP--GFHTCVGSGGER----QTPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT  173 (306)
Q Consensus       105 ~~~~~~~~--~~~~~~~~~~~~----~~~~~~---~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~  173 (306)
                      ......++  .+....+.....    .+...+   ...+++++++++|.+++.+..  .+.+++|+.+++|.||.|.|..
T Consensus        78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~  157 (391)
T PRK07588         78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH  157 (391)
T ss_pred             CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence            00000000  000000000000    111111   123588999999999986554  4677788889999999999976


Q ss_pred             Cc
Q 021871          174 AS  175 (306)
Q Consensus       174 ~~  175 (306)
                      ..
T Consensus       158 S~  159 (391)
T PRK07588        158 SH  159 (391)
T ss_pred             cc
Confidence            44

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.76  E-value=3.6e-08  Score=88.29  Aligned_cols=35  Identities=20%  Similarity=0.409  Sum_probs=32.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      |..+||+|||||++|+++|..|++.|+   +|+|+|+.
T Consensus         2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~---~v~viE~~   36 (405)
T PRK08850          2 MQSVDVAIIGGGMVGLALAAALKESDL---RIAVIEGQ   36 (405)
T ss_pred             CCcCCEEEECccHHHHHHHHHHHhCCC---EEEEEcCC
Confidence            346899999999999999999999998   99999986

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.75  E-value=4.7e-08  Score=88.28  Aligned_cols=56  Identities=32%  Similarity=0.531  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ..+...|.+...++||+++.++ |+.+...++|.+..|++.+|+++++|.+|-|+|.
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~  209 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGR  209 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGG
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCc
Confidence            4667778888899999999985 7777776788888999999999999999999996

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.75  E-value=2.1e-08  Score=89.42  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=32.2

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHc---CCCCCcEEEeccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~---g~~~~~V~vie~~   86 (306)
                      |+++||+|||||++|+++|+.|++.   |+   +|+|+|+.
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~---~v~v~E~~   38 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGL---PVALIEAF   38 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCC---EEEEEeCC
Confidence            3568999999999999999999998   98   99999995

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.74  E-value=1.7e-07  Score=87.99  Aligned_cols=58  Identities=16%  Similarity=0.172  Sum_probs=46.1

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC-CCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|+++..++ ++.+.+|+.   .+|+  .+.+|.||+|+|-
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGa  294 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGP  294 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCH
Confidence            56788888899999999999999999988643 466666665   3344  5899999999984

>PRK06185 hypothetical protein; Provisional

Probab=98.74  E-value=3.8e-08  Score=88.19  Aligned_cols=37  Identities=27%  Similarity=0.398  Sum_probs=33.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+.+||+|||||++|+++|..|++.|+   +|+|+|+.+.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~---~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGV---DVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence            456899999999999999999999998   9999998753

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.73  E-value=1.3e-07  Score=83.88  Aligned_cols=96  Identities=22%  Similarity=0.308  Sum_probs=66.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc---------------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------------------------------------  243 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~---------------------------------------------  243 (306)
                      +|+|||+|++|+-.|..+++.+.+|.++++++...                                             
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d   81 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED   81 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence            48999999999999999999999999999987753                                             


Q ss_pred             ---------------------ccc-cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEE
Q 021871          244 ---------------------QRL-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL  301 (306)
Q Consensus       244 ---------------------~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~  301 (306)
                                           |.. -...+.+.+.+.+++.||+++++++|.+|... ++.+..|++++++.+.+|.||+
T Consensus        82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen   82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred             HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence                                 000 11346778889999999999999999999874 4444478886777999999999


Q ss_pred             ecCC
Q 021871          302 LPYD  305 (306)
Q Consensus       302 a~g~  305 (306)
                      |+|.
T Consensus       161 AtGG  164 (409)
T PF03486_consen  161 ATGG  164 (409)
T ss_dssp             ----
T ss_pred             ecCC
Confidence            9985

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK06753 hypothetical protein; Provisional

Probab=98.73  E-value=8.2e-08  Score=84.99  Aligned_cols=118  Identities=16%  Similarity=0.139  Sum_probs=68.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcc--c-c--------ccc---------------cCC-C
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL--T-K--------GYL---------------FPL-D  105 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~--~-~--------~~~---------------~~~-~  105 (306)
                      ||+|||||++||++|..|++.|+   +|+|+|+++........+  . .        |..               +.. .
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g   78 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGH---EVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG   78 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence            79999999999999999999999   999999987532110000  0 0        000               000 0


Q ss_pred             CCCCCCCCccc--ccCCCCCcCChhHHhh--cCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCC
Q 021871          106 KKPARLPGFHT--CVGSGGERQTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (306)
Q Consensus       106 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~  174 (306)
                      ...... .+..  ....-....+...+.+  .+.++++++++.+++.++.  .+.+++|..+++|.||.|.|...
T Consensus        79 ~~~~~~-~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S  152 (373)
T PRK06753         79 TLLNKV-KLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS  152 (373)
T ss_pred             CEEeec-ccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence            000000 0000  0000000112222222  2356888999999976544  56677888899999999999653

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.73  E-value=4.2e-09  Score=92.27  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=30.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      +||+|||||++|+++|..|+++|+   +|+|+|+.+..
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~---~v~i~E~~~~~   36 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGI---DVTIIERRPDP   36 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTC---EEEEEESSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhccc---ccccchhcccc
Confidence            699999999999999999999999   99999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.73  E-value=1.5e-07  Score=78.50  Aligned_cols=57  Identities=21%  Similarity=0.307  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEe-CCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      .......++..+++.|+.++.+..|..+.. ++.+..+.|+|.+|....++.+|+++|
T Consensus       152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~G  209 (399)
T KOG2820|consen  152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVG  209 (399)
T ss_pred             HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEec
Confidence            456677889999999999999999988762 345556689999998899999999987

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.72  E-value=6.1e-08  Score=86.10  Aligned_cols=120  Identities=18%  Similarity=0.249  Sum_probs=70.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCC------C-Ccccc---------ccc---------------
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------R-PALTK---------GYL---------------  101 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~------~-~~~~~---------~~~---------------  101 (306)
                      ||+|||||++|+++|+.|++.|+   +|+|+|+.+.....      + ..+..         |..               
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   77 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGL---KIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH   77 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCC---EEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence            79999999999999999999998   99999998653110      0 00000         000               


Q ss_pred             -cCCCC-CCCCCC-------Cccccc-CCCCCcCChhHHhhcC-eEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEE
Q 021871          102 -FPLDK-KPARLP-------GFHTCV-GSGGERQTPEWYKEKG-IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV  168 (306)
Q Consensus       102 -~~~~~-~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~-v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lil  168 (306)
                       +.... ....++       .+.... .......+.+.+.+.+ ++++.+++|.+++....  .+.++++..+.+|.+|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~  157 (385)
T TIGR01988        78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG  157 (385)
T ss_pred             EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence             00000 000000       000000 0000111222234455 88999999999876544  46667888899999999


Q ss_pred             eeCCCCc
Q 021871          169 ATGCTAS  175 (306)
Q Consensus       169 a~G~~~~  175 (306)
                      |.|....
T Consensus       158 adG~~S~  164 (385)
T TIGR01988       158 ADGANSK  164 (385)
T ss_pred             eCCCCCH
Confidence            9997643

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.72  E-value=2.8e-08  Score=88.25  Aligned_cols=119  Identities=18%  Similarity=0.224  Sum_probs=69.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC-CCCCcEEEeccCCCCCCCC------Ccccc---------ccccCCCCCCCCCCCcc-
Q 021871           53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAPYER------PALTK---------GYLFPLDKKPARLPGFH-  115 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g-~~~~~V~vie~~~~~~~~~------~~~~~---------~~~~~~~~~~~~~~~~~-  115 (306)
                      ||+||||||+|+++|..|++.| +   +|+|+|+.+......      ..+..         |..............+. 
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~---~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~   77 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKI---KIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV   77 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCc---eEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence            7999999999999999999999 9   999999976432110      00000         00000000000000000 


Q ss_pred             -------c--c-------------c-CCCCCcCChhHHhh-cCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEe
Q 021871          116 -------T--C-------------V-GSGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA  169 (306)
Q Consensus       116 -------~--~-------------~-~~~~~~~~~~~~~~-~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila  169 (306)
                             .  .             . .......+.+.+.+ .+++++.+++|+++.....  .+.++++..+.+|.||.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A  157 (382)
T TIGR01984        78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA  157 (382)
T ss_pred             EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence                   0  0             0 00000111122333 3889998999999875443  566777888999999999


Q ss_pred             eCCCC
Q 021871          170 TGCTA  174 (306)
Q Consensus       170 ~G~~~  174 (306)
                      .|...
T Consensus       158 dG~~S  162 (382)
T TIGR01984       158 DGANS  162 (382)
T ss_pred             cCCCh
Confidence            99764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.72  E-value=1.5e-07  Score=86.46  Aligned_cols=56  Identities=18%  Similarity=0.225  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC---CC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---G~--~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+.+.|++++.+++|+++.. +++.+ +|.+.+   |+  .+.++.||.|+|.
T Consensus       154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~-~~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~  214 (508)
T PRK12266        154 DARLVVLNARDAAERGAEILTRTRVVSARR-ENGLW-HVTLEDTATGKRYTVRARALVNAAGP  214 (508)
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEE-eCCEE-EEEEEEcCCCCEEEEEcCEEEECCCc
Confidence            456666777778899999999999999986 34443 455543   53  6899999999984

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.72  E-value=7e-08  Score=85.04  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=65.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCCCCCCCCCccccccccCCCC----------CCCCCCCcccccC-
Q 021871           53 EFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAPYERPALTKGYLFPLDK----------KPARLPGFHTCVG-  119 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-  119 (306)
                      ||+|||||+||+++|..|++.  |+   +|+++|+.+...-...   .+++.....          ....++.+.-... 
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~---~V~lle~~~~~~~~~t---w~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~   74 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDF---RIRVIEAGRTIGGNHT---WSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK   74 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCC---eEEEEeCCCCCCCccc---ceecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence            799999999999999999987  66   9999999874321000   000000000          0000111000000 


Q ss_pred             -----CCCC-----cCChhHH-hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871          120 -----SGGE-----RQTPEWY-KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       120 -----~~~~-----~~~~~~~-~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                           ...+     ..+.+.+ ++.+..+.++.+|..++.+  .+.+.+|..++++.||.|.|..+.
T Consensus        75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCCC
Confidence                 0000     0111222 2223336667888888544  366678889999999999997743

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK06126 hypothetical protein; Provisional

Probab=98.71  E-value=8.8e-08  Score=89.07  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=34.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +..+||+|||||++||++|..|+++|+   +|+|+|+.+.
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~---~v~viEr~~~   41 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGV---DSILVERKDG   41 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence            446899999999999999999999999   9999999865

>PRK11445 putative oxidoreductase; Provisional

Probab=98.71  E-value=9.4e-08  Score=83.84  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++||+||||||+|+++|..|++. +   +|+++|+.+.
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~---~V~liE~~~~   34 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-M---KVIAIDKKHQ   34 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-C---CEEEEECCCc
Confidence            47999999999999999999998 7   9999998864

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=1.4e-08  Score=89.84  Aligned_cols=36  Identities=19%  Similarity=0.199  Sum_probs=33.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ++|+|+|||+|||+||++|++.|+   +|+|+|.++..+
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~G   36 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLG   36 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccC
Confidence            489999999999999999999999   999999988764

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.70  E-value=6.3e-08  Score=86.17  Aligned_cols=32  Identities=22%  Similarity=0.526  Sum_probs=30.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      +||+||||||||+++|+.|++.|+   +|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~---~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGI---ETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC---cEEEEECC
Confidence            699999999999999999999998   99999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.69  E-value=1e-06  Score=73.47  Aligned_cols=65  Identities=20%  Similarity=0.314  Sum_probs=54.5

Q ss_pred             CcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCE--EecCEEEEecCC
Q 021871          240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTVILLPYD  305 (306)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~--i~~d~vv~a~g~  305 (306)
                      |+.-|+...-.+.+.+.+.++..|+-+..+-+|...+. .+++|..|.+.++..  +.+|.+|+|+|.
T Consensus       249 PtlPPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGs  315 (421)
T COG3075         249 PTLPPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGS  315 (421)
T ss_pred             CCCCcchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccc
Confidence            44445545667888999999999999999999999997 688888999998764  679999999985

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.68  E-value=6.4e-07  Score=83.87  Aligned_cols=57  Identities=18%  Similarity=0.180  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ..+...+.+.+++.||+++.++.++++..++++++.+|..   .+|+  .+.++.||+|||-
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  210 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG  210 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence            3456667777778899999999999987544578888864   4564  5789999999984

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.67  E-value=3.4e-07  Score=78.54  Aligned_cols=55  Identities=20%  Similarity=0.279  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC---------------CCEEecCEEEEecC
Q 021871          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTVILLPY  304 (306)
Q Consensus       250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---------------G~~i~~d~vv~a~g  304 (306)
                      .+..++-+..++.||+|+.+.-..++.-++||.|.+|.+.|               |-.+.+..-|+|-|
T Consensus       184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEG  253 (621)
T KOG2415|consen  184 QLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEG  253 (621)
T ss_pred             HHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecc
Confidence            45667778889999999999999888888899998998865               22566666666644

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.67  E-value=6.4e-08  Score=88.89  Aligned_cols=56  Identities=13%  Similarity=0.076  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC----CEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G----~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+..+++|++++.+++|+++..+ ++.+ .|.+.++    .++.+|.||.|+|.
T Consensus       154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~~~-~v~~~~~~g~~~~i~a~~VVnAaG~  213 (502)
T PRK13369        154 DARLVVLNALDAAERGATILTRTRCVSARRE-GGLW-RVETRDADGETRTVRARALVNAAGP  213 (502)
T ss_pred             HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CCEE-EEEEEeCCCCEEEEEecEEEECCCc
Confidence            5566677778889999999999999999863 4433 5666554    25899999999984

>PLN02676 polyamine oxidase

Probab=98.66  E-value=1.9e-07  Score=85.19  Aligned_cols=40  Identities=25%  Similarity=0.357  Sum_probs=34.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ...+||+|||||++||++|++|++.|..  +|+|+|+++..+
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~~G   63 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDRIG   63 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCCCC
Confidence            3467999999999999999999999963  599999987754

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.65  E-value=1.6e-07  Score=84.90  Aligned_cols=98  Identities=15%  Similarity=0.307  Sum_probs=73.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +++|+|||||++|+.+|..|++.|.   +|+++++.+...-.            ..  ..           ....+.+.+
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l~~------------~~--~~-----------~~~~~~~~l  208 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGS---KVTVLDAASTILPR------------EE--PS-----------VAALAKQYM  208 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCccCCC------------CC--HH-----------HHHHHHHHH
Confidence            4689999999999999999999997   99999987653100            00  00           012345667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEE-EcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTL-ITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v-~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++++.+++.++..+ ...++..+.+|.+++|+|..|..
T Consensus       209 ~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~  255 (438)
T PRK07251        209 EEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNT  255 (438)
T ss_pred             HHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCc
Confidence            88999999999999998654433 33456689999999999998763

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.65  E-value=8.2e-08  Score=86.75  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=30.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHH----cCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVE----HGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~----~g~~~~~V~vie~~~   87 (306)
                      +||+|||||++|+++|..|++    .|+   +|+|+|+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~---~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDL---KVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCC---eEEEEeCCC
Confidence            589999999999999999998    788   999999943

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.65  E-value=1.2e-06  Score=81.90  Aligned_cols=57  Identities=21%  Similarity=0.217  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ..+...+.+...+.|++++.++.++++..+++|++.+|..   .+|+  .+.++.||+|||.
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  209 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGG  209 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCC
Confidence            4456667777778899999999999987545677778765   3454  5789999999985

>PRK07121 hypothetical protein; Validated

Probab=98.64  E-value=7.1e-07  Score=81.91  Aligned_cols=58  Identities=24%  Similarity=0.274  Sum_probs=46.1

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC-CC--EEec-CEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~-G~--~i~~-d~vv~a~g~  305 (306)
                      ...+...+.+.+++.|++++++++++++..++++++.+|...+ |+  .+.+ +.||+|||-
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg  237 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG  237 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence            4567778888899999999999999998764467787877643 32  4778 999999984

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.64  E-value=2.5e-08  Score=89.70  Aligned_cols=116  Identities=22%  Similarity=0.271  Sum_probs=30.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCC--C---ccc---------cccc---c-CCCC---CCC-C
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER--P---ALT---------KGYL---F-PLDK---KPA-R  110 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~--~---~~~---------~~~~---~-~~~~---~~~-~  110 (306)
                      ||||||||++|++||+.+++.|.   +|+|+|+....+-..  .   ...         .+..   . ....   ... .
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~---~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~   77 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGA---KVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED   77 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCC---EEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence            89999999999999999999998   999999998764110  0   000         0000   0 0000   000 0


Q ss_pred             CCCcc--cccC-CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC---EEEcCC---CcEEecCcEEEeeC
Q 021871          111 LPGFH--TCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNS---GKLLKYGSLIVATG  171 (306)
Q Consensus       111 ~~~~~--~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~---~v~~~~---g~~~~~~~lila~G  171 (306)
                      ..++.  .... ......+.+.+.+.++++++++.+.++..++.   .|.+.+   ...++++.+|-|||
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG  147 (428)
T PF12831_consen   78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATG  147 (428)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            00000  0111 12223456667778999999999999887763   344443   44899999999999

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.63  E-value=1e-07  Score=77.24  Aligned_cols=36  Identities=28%  Similarity=0.258  Sum_probs=33.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      .+|+|||+|++||+||+.|++.|+   +|+|+||....+
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~---~vtV~eKg~GvG   37 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGR---EVTVFEKGRGVG   37 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCc---EEEEEEcCCCcc
Confidence            479999999999999999999999   999999987754

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.63  E-value=2e-07  Score=84.10  Aligned_cols=98  Identities=22%  Similarity=0.314  Sum_probs=75.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+|+|||||++|+.+|..|++.|.   +|+++++.+.....       . ++                ......+.+.+
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~~~~-------~-~~----------------~~~~~~~~~~l  189 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGK---NVTLIHRSERILNK-------L-FD----------------EEMNQIVEEEL  189 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccCcc-------c-cC----------------HHHHHHHHHHH
Confidence            4699999999999999999999997   89999987543100       0 00                00013455667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.|++++.+..+.+++.++..+.+.++..+.+|.+++|+|..+.
T Consensus       190 ~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (427)
T TIGR03385       190 KKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN  234 (427)
T ss_pred             HHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence            888999999999999987655445667788999999999998876

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.62  E-value=1.2e-07  Score=84.06  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=31.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      +.||+|||||++|+++|..|++.|+   +|+|+|+.
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~---~v~l~E~~   33 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGI---KTTIFESK   33 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCC---eEEEecCC
Confidence            3699999999999999999999999   99999986

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.62  E-value=2.2e-07  Score=82.37  Aligned_cols=98  Identities=16%  Similarity=0.312  Sum_probs=75.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++|+|||||+.|+.+|..|.+.|.   +|+++++.+...-       ..+ +     .           .....+.+.+
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~---~Vtlv~~~~~~l~-------~~~-~-----~-----------~~~~~l~~~l  193 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGK---AVTLVDNAASLLA-------SLM-P-----P-----------EVSSRLQHRL  193 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCcccc-------hhC-C-----H-----------HHHHHHHHHH
Confidence            4689999999999999999999997   9999998765310       000 0     0           0013456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.+++++.++++.++..+..  .+.+.++..+.+|.+|+|+|..++
T Consensus       194 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~  240 (377)
T PRK04965        194 TEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN  240 (377)
T ss_pred             HhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence            889999999999999987543  466778889999999999998875

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.62  E-value=4.4e-07  Score=73.14  Aligned_cols=93  Identities=20%  Similarity=0.312  Sum_probs=65.9

Q ss_pred             EEEcCCHHHHHHHHHHHhCCCc-EEEEecCCccccc--------------c----------------------------c
Q 021871          211 VVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR--------------L----------------------------F  247 (306)
Q Consensus       211 ~viG~g~~a~e~a~~l~~~~~~-v~~~~~~~~~~~~--------------~----------------------------~  247 (306)
                      +|||+|+.|+-.|..|.+.+.+ ++++++++.+...              .                            .
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999988 9999987553210              0                            0


Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ..++.+.+++..++.++++.++++|++++..+++ + .|++.+++++.+|.||+|||.
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w-~v~~~~~~~~~a~~VVlAtG~  136 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-W-TVTTRDGRTIRADRVVLATGH  136 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-E-EEEETTS-EEEEEEEEE---S
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-E-EEEEEecceeeeeeEEEeeec
Confidence            1234566788888889999999999999985444 5 599999889999999999995

...

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.61  E-value=1.8e-06  Score=81.22  Aligned_cols=58  Identities=21%  Similarity=0.201  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+.+.||+++.++.+.++..++++++.++..   .+|+  .+.++.||+|||-
T Consensus       186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  248 (635)
T PLN00128        186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG  248 (635)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence            45667777787778899999999999976544678888765   3464  5789999999984

>PRK06996 hypothetical protein; Provisional

Probab=98.61  E-value=1.1e-07  Score=84.86  Aligned_cols=125  Identities=14%  Similarity=0.106  Sum_probs=70.1

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCC-CCCcEEEeccCCCCCCC-C--C-cc-------cc--ccc------------
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYE-R--P-AL-------TK--GYL------------  101 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~-~~~~V~vie~~~~~~~~-~--~-~~-------~~--~~~------------  101 (306)
                      ..+.+||+||||||+|+++|..|++.|. ...+|+|+|+.+..... .  . .+       ..  |.+            
T Consensus         8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~   87 (398)
T PRK06996          8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV   87 (398)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence            3456899999999999999999999873 12379999997532100 0  0 00       00  000            


Q ss_pred             cCCCC--------CCCCCCCccccc-CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCC---cEEecCcEE
Q 021871          102 FPLDK--------KPARLPGFHTCV-GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLI  167 (306)
Q Consensus       102 ~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g---~~~~~~~li  167 (306)
                      .....        .....+.+-... ...+...+.+.+.+.+++++.++++..+.....  .+.+.++   ..+++|+||
T Consensus        88 ~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvI  167 (398)
T PRK06996         88 SQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAV  167 (398)
T ss_pred             ecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEE
Confidence            00000        000000000000 001112233334556888998999888865544  4555543   589999999


Q ss_pred             EeeCC
Q 021871          168 VATGC  172 (306)
Q Consensus       168 la~G~  172 (306)
                      .|.|.
T Consensus       168 gADG~  172 (398)
T PRK06996        168 QAEGG  172 (398)
T ss_pred             ECCCC
Confidence            99994

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.61  E-value=6.5e-08  Score=63.04  Aligned_cols=32  Identities=25%  Similarity=0.331  Sum_probs=29.0

Q ss_pred             EEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        56 IIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      |||||++||++|+.|++.|+   +|+|+|+.+..+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~---~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY---RVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS---EEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC---cEEEEecCcccC
Confidence            89999999999999999998   999999998764

...

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.61  E-value=3.7e-07  Score=85.23  Aligned_cols=57  Identities=25%  Similarity=0.366  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-C--EEec-CEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-S--TIDA-DTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~--~i~~-d~vv~a~g~  305 (306)
                      ...+...+.+.+++.||+++.++.++++.. +++++.+|...++ +  .+.+ +.||+|||-
T Consensus       220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg  280 (578)
T PRK12843        220 GNALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGG  280 (578)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCC
Confidence            556778888999999999999999999875 4778888876544 2  4665 789999984

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.60  E-value=3e-07  Score=83.67  Aligned_cols=35  Identities=29%  Similarity=0.336  Sum_probs=32.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++||+|||||.|||+||..+++.|.   +|+|+||...
T Consensus         1 ~~DVvVVGaG~AGl~AAi~aae~G~---~V~liek~~~   35 (466)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAKKGF---DVTIIGPGIK   35 (466)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence            3799999999999999999999998   9999999753

>PLN02661 Putative thiazole synthesis

Probab=98.60  E-value=2e-07  Score=79.97  Aligned_cols=36  Identities=22%  Similarity=0.424  Sum_probs=32.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~~~   89 (306)
                      .+||+|||||++|+++|++|++. |+   +|+|+|+....
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~---kV~viEk~~~~  128 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNV---KVAIIEQSVSP  128 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCC---eEEEEecCccc
Confidence            57999999999999999999976 66   99999997654

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.60  E-value=1.6e-06  Score=78.54  Aligned_cols=58  Identities=16%  Similarity=0.239  Sum_probs=46.4

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC--CCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~--~G~--~i~~d~vv~a~g~  305 (306)
                      ...+.+.+.+.+++.|++++.+++|+++..++++++.+|...  +|+  .+.+|.||+|+|-
T Consensus       129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg  190 (439)
T TIGR01813       129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGG  190 (439)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence            456788888999999999999999999987556777666653  343  3789999999984

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.59  E-value=2.3e-07  Score=84.39  Aligned_cols=98  Identities=16%  Similarity=0.211  Sum_probs=72.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +.+++|||||++|+.+|..|.+.|.   +|+++++.+....           ..+   .           +....+.+.+
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~ll~-----------~~d---~-----------e~~~~l~~~L  221 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGT---KVTIVEMAPQLLP-----------GED---E-----------DIAHILREKL  221 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcCc-----------ccc---H-----------HHHHHHHHHH
Confidence            4689999999999999999999987   9999998754310           000   0           0013455667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcC-CC--cEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITN-SG--KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~-~g--~~~~~~~lila~G~~~~~  176 (306)
                      ++.++++++++++.+++.+...+.+. ++  ..+.+|.+++|+|..|+.
T Consensus       222 ~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~  270 (458)
T PRK06912        222 ENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRV  270 (458)
T ss_pred             HHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence            88899999999999998765544332 33  368999999999988763

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.59  E-value=2.5e-07  Score=82.54  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=74.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+...-.        ..+        +        .....+.+.+
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l~~--------~~~--------~--------~~~~~l~~~l  196 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRC---KVTVIELAATVMGR--------NAP--------P--------PVQRYLLQRH  196 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCcchhh--------hcC--------H--------HHHHHHHHHH
Confidence            4689999999999999999999997   99999987653100        000        0        0013455667


Q ss_pred             hhcCeEEEeCCcEEEEeCCC-CEEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK-QTLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~-~~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.++++++++.+.+++.+. ..+.+.+++.+.+|.+++|+|..++
T Consensus       197 ~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        197 QQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISAN  242 (396)
T ss_pred             HHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChh
Confidence            78899999999999987632 2466778889999999999998876

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.58  E-value=2.2e-07  Score=85.38  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ..+||+|||||+||+.||..+++.|.   +|.++|+..
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~---kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGA---KTLLLTHNL   37 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCC---cEEEEeccc
Confidence            45899999999999999999999998   999999874

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.58  E-value=9.8e-07  Score=73.16  Aligned_cols=202  Identities=20%  Similarity=0.253  Sum_probs=108.2

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc-----cCCCCCCCCCCCcccccCCCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL-----FPLDKKPARLPGFHTCVGSGG  122 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  122 (306)
                      +...+|+||||||+.|++.|++|.-+ ++..+|.|+|++..+.-+....+.|.+     +++......+       .-+.
T Consensus        45 s~~~~D~VvvGgGiVGlAsARel~lr-hp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAkl-------CV~G  116 (453)
T KOG2665|consen   45 SKERYDLVVVGGGIVGLASARELSLR-HPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKL-------CVEG  116 (453)
T ss_pred             ccccccEEEECCceeehhhhHHHhhc-CCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhh-------hhcc
Confidence            34579999999999999999999887 356699999999887655455544443     2222221111       1111


Q ss_pred             CcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHH
Q 021871          123 ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS  202 (306)
Q Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  202 (306)
                      ..-+..++.+.++...                       ....||+|++....  |.                 .+.+..
T Consensus       117 ~~LlY~yc~e~~IpyK-----------------------k~GKLIVAt~~~Ei--pr-----------------Ld~L~~  154 (453)
T KOG2665|consen  117 RELLYEYCDEKKIPYK-----------------------KTGKLIVATESEEI--PR-----------------LDALMH  154 (453)
T ss_pred             HHHHHHHhhhcCCChh-----------------------hcceEEEEeChhhc--ch-----------------HHHHHH
Confidence            1223333444433321                       23458889886643  21                 011111


Q ss_pred             hhh-cCC-eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCC
Q 021871          203 SLE-KAK-KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  280 (306)
Q Consensus       203 ~~~-~~~-~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~  280 (306)
                      .-. .+- -+..|- |.-..++-.++.-.   -.+..++..+..   -..+...+-+.++..|.++.++-+++.+..+.+
T Consensus       155 ~g~qN~v~glrmie-g~ei~~~EP~crgv---kAl~sPhtGIvD---~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~  227 (453)
T KOG2665|consen  155 RGTQNGVPGLRMIE-GSEIMEMEPYCRGV---KALLSPHTGIVD---WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKE  227 (453)
T ss_pred             hhhhcCCCCeeeec-cchhhhcChhhhhh---hhhcCCCcceee---hHHHHHHHHHHHHHhcccccccceeccchhccC
Confidence            000 000 011111 11112222222111   012233333332   123334455668889999999999999886444


Q ss_pred             C---cEEEEEeCCCCEEecCEEEEecCCC
Q 021871          281 G---RVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       281 ~---~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      .   .-+.|....|+++....+|-|+|.+
T Consensus       228 ~~~~Ypivv~ngk~ee~r~~~~vtc~gl~  256 (453)
T KOG2665|consen  228 ATFSYPIVVLNGKGEEKRTKNVVTCAGLQ  256 (453)
T ss_pred             CCCCCceEEecCccceeEEeEEEEecccc
Confidence            2   1123545557889999999999865

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.58  E-value=2.8e-07  Score=83.94  Aligned_cols=98  Identities=18%  Similarity=0.287  Sum_probs=74.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...            +...     +        +....+.+.+
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l------------~~~~-----~--------~~~~~l~~~l  223 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGA---EVTIVEALPRIL------------PGED-----K--------EISKLAERAL  223 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCcC------------CcCC-----H--------HHHHHHHHHH
Confidence            4689999999999999999999997   999999875531            0000     0        0013456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCC---cEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g---~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++++.+++.+..  .+.+.++   +.+.+|.+++|+|..|+.
T Consensus       224 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~  274 (462)
T PRK06416        224 KKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT  274 (462)
T ss_pred             HHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence            889999999999999986543  3444444   579999999999998764

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.58  E-value=3.1e-07  Score=83.70  Aligned_cols=98  Identities=19%  Similarity=0.280  Sum_probs=73.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||++|+.+|..|.+.|.   +|+++++.+... .       ..   .      +        +....+.+.+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l-~-------~~---~------~--------~~~~~~~~~l  221 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGS---KVTVIEMLDRIL-P-------GE---D------A--------EVSKVVAKAL  221 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCCCC-C-------CC---C------H--------HHHHHHHHHH
Confidence            4699999999999999999999997   999999876531 0       00   0      0        0013455667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCC--cEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG--KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g--~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++++.+++..+.  .+.+.++  ..+.+|.+++|+|..|+.
T Consensus       222 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~  271 (461)
T TIGR01350       222 KKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNT  271 (461)
T ss_pred             HHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccC
Confidence            888999999999998876544  3444455  479999999999988763

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.57  E-value=4.7e-07  Score=81.57  Aligned_cols=56  Identities=20%  Similarity=0.249  Sum_probs=46.4

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC-----EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~-----~i~~d~vv~a~g~  305 (306)
                      +..+.-...+...++|.+++..++|+++.. +++ +.+|+..|.+     .+.++.||.|||-
T Consensus       163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGp  223 (532)
T COG0578         163 DARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGP  223 (532)
T ss_pred             hHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCc
Confidence            567777888889999999999999999997 555 6688876643     5889999999983

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.56  E-value=3.5e-06  Score=79.19  Aligned_cols=58  Identities=17%  Similarity=0.141  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+++.||+++.++.++++..+++|++.+|..   .+|+  .+.++.||+|||-
T Consensus       165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  227 (617)
T PTZ00139        165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG  227 (617)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence            45677778888888999999999999977535778888764   3564  5789999999984

>PRK12839 hypothetical protein; Provisional

Probab=98.56  E-value=2.9e-06  Score=78.97  Aligned_cols=58  Identities=26%  Similarity=0.382  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe--CCCC-EE-ecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS-TI-DADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~--~~G~-~i-~~d~vv~a~g~  305 (306)
                      ...+...+.+.+++.|++|+.+++++++..++++++.+|..  .+|+ .+ .++.||+|||-
T Consensus       213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGG  274 (572)
T PRK12839        213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGG  274 (572)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCC
Confidence            55677778888899999999999999987545788888864  3443 23 45899999984

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.56  E-value=3.1e-06  Score=79.12  Aligned_cols=58  Identities=19%  Similarity=0.173  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCC---CcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~---~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+++.||+++.++.++++..+++   |++.++..   .+|+  .+.++.||+|||-
T Consensus       139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  204 (583)
T PRK08205        139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGG  204 (583)
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCC
Confidence            346777788888889999999999999875332   77778764   4564  4789999999985

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.55  E-value=7.1e-07  Score=84.05  Aligned_cols=53  Identities=23%  Similarity=0.273  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871          252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTVILLPYD  305 (306)
Q Consensus       252 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G~--~i~~d~vv~a~g~  305 (306)
                      .+.+.+.+++.||+++.++.++++.. +++++.+|...   +|+  .+.++.||+|||-
T Consensus       173 ~~~L~~~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG  230 (640)
T PRK07573        173 YQALSRQIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG  230 (640)
T ss_pred             HHHHHHHHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence            35566677788999999999999875 46788888764   454  5889999999984

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.55  E-value=4.6e-07  Score=81.12  Aligned_cols=99  Identities=18%  Similarity=0.303  Sum_probs=77.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      .+.+++|||||..|+..|..+.++|.   +|+|+|+.+.+.-           ..++              +....+...
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~LG~---~VTiie~~~~iLp-----------~~D~--------------ei~~~~~~~  223 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAALGS---KVTVVERGDRILP-----------GEDP--------------EISKELTKQ  223 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCCC-----------cCCH--------------HHHHHHHHH
Confidence            46789999999999999999999998   9999999876411           0010              112456677


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEcCCCc--EEecCcEEEeeCCCCcc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK--LLKYGSLIVATGCTASR  176 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~--~~~~~~lila~G~~~~~  176 (306)
                      +++.+++++.++.+..+.....  .+.++++.  .+++|.+++|+|-.|+.
T Consensus       224 l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~  274 (454)
T COG1249         224 LEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT  274 (454)
T ss_pred             HHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence            7787899999999999877554  56666665  68999999999988774

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.55  E-value=3e-07  Score=81.96  Aligned_cols=35  Identities=14%  Similarity=0.292  Sum_probs=32.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+||+|||||++||++|..|++.|+   +|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~---~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGI---DSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCC---CEEEEEcCCc
Confidence            4799999999999999999999999   9999999864

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.55  E-value=4e-07  Score=82.30  Aligned_cols=95  Identities=14%  Similarity=0.231  Sum_probs=74.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+++|||||+.|+.+|..|++.|.   +|+++++.+...-        . ++                .+....+.+.+
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~~--------~-~d----------------~~~~~~l~~~l  199 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGL---HPTLIHRSDKINK--------L-MD----------------ADMNQPILDEL  199 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---cEEEEecccccch--------h-cC----------------HHHHHHHHHHH
Confidence            4689999999999999999999997   9999998754310        0 00                00013456678


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.|++++.++.+.+++.  ..+.+++++.+.+|.+++|+|..|+
T Consensus       200 ~~~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn  242 (438)
T PRK13512        200 DKREIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPN  242 (438)
T ss_pred             HhcCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcC
Confidence            889999999999999874  3567777788999999999998876

>PRK06116 glutathione reductase; Validated

Probab=98.54  E-value=4.3e-07  Score=82.48  Aligned_cols=98  Identities=19%  Similarity=0.178  Sum_probs=75.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+|+|||||+.|+.+|..|.+.|.   +|+++++.+...-        . +.  .              +....+.+.+
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~--------~-~~--~--------------~~~~~l~~~L  218 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGS---ETHLFVRGDAPLR--------G-FD--P--------------DIRETLVEEM  218 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCcc--------c-cC--H--------------HHHHHHHHHH
Confidence            4799999999999999999999997   9999998754210        0 00  0              0023456678


Q ss_pred             hhcCeEEEeCCcEEEEeCCC---CEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~---~~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.+++|.+++.+.   ..+.+.++..+.+|.+++|+|..|+.
T Consensus       219 ~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~  267 (450)
T PRK06116        219 EKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT  267 (450)
T ss_pred             HHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence            88999999999999997542   24666778889999999999988764

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.54  E-value=2.8e-06  Score=79.36  Aligned_cols=56  Identities=25%  Similarity=0.272  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ..+...+.+.+++.||+++.++.++++.. +++++.+|..   .+|+  .+.++.||+|||-
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG  189 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG  189 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence            45666777778888999999999999886 4677777654   4564  5889999999984

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.54  E-value=4.5e-07  Score=82.80  Aligned_cols=98  Identities=19%  Similarity=0.345  Sum_probs=72.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+|+|||||++|+.+|..|++.|.   +|+++++.+...            +...  .           .....+.+.+
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~---~Vtli~~~~~il------------~~~~--~-----------~~~~~l~~~l  231 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGV---EVTVVEAADRIL------------PTED--A-----------ELSKEVARLL  231 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccC------------CcCC--H-----------HHHHHHHHHH
Confidence            4799999999999999999999997   999999876421            0000  0           0013455667


Q ss_pred             hhcCeEEEeCCcEEEEeC--CCCE--EEcCCC--cEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDI--EKQT--LITNSG--KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~--~~~~--v~~~~g--~~~~~~~lila~G~~~~~  176 (306)
                      ++.|++++.++++.+++.  ++..  +.+.+|  ..+.+|.+++|+|..|+.
T Consensus       232 ~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~  283 (472)
T PRK05976        232 KKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT  283 (472)
T ss_pred             HhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence            889999999999999874  3332  233455  369999999999998764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.54  E-value=4.9e-07  Score=82.36  Aligned_cols=98  Identities=17%  Similarity=0.288  Sum_probs=75.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...       . . ++                .+....+.+.+
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l-------~-~-~d----------------~~~~~~l~~~l  226 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGV---KVTLINTRDRLL-------S-F-LD----------------DEISDALSYHL  226 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC-------C-c-CC----------------HHHHHHHHHHH
Confidence            5799999999999999999999997   999999876431       0 0 00                00123456667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++++..+...+.  .+.+.++..+++|.+++|+|..|+.
T Consensus       227 ~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  274 (461)
T PRK05249        227 RDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT  274 (461)
T ss_pred             HHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence            788999999999999875433  4556677789999999999988764

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.54  E-value=1.8e-06  Score=80.14  Aligned_cols=57  Identities=23%  Similarity=0.278  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-CCC--EEec-CEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-~G~--~i~~-d~vv~a~g~  305 (306)
                      ...+...+.+.+++.||+++++++++++.. ++++|.+|... +|+  .+.+ +.||+|||-
T Consensus       216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGG  276 (564)
T PRK12845        216 GQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGG  276 (564)
T ss_pred             hHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCC
Confidence            567888888889999999999999999875 57888888553 343  3455 689999984

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.53  E-value=4.7e-07  Score=80.77  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=31.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +||+||||||+|+++|+.|++.|+   +|+|+|+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~---~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGI---QTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence            489999999999999999999999   9999998754

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.53  E-value=2e-07  Score=82.93  Aligned_cols=35  Identities=14%  Similarity=0.335  Sum_probs=32.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+||+|||||++|+++|..|++.|+   +|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCC---CEEEEECCCC
Confidence            4799999999999999999999999   9999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.53  E-value=8.8e-08  Score=75.61  Aligned_cols=38  Identities=21%  Similarity=0.351  Sum_probs=30.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ..+||+||||||+||+||++|++.|+   +|+++|++...+
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~---kV~v~E~~~~~G   53 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGL---KVAVIERKLSPG   53 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-B
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCC---eEEEEecCCCCC
Confidence            35799999999999999999999999   999999986643

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.53  E-value=1e-06  Score=79.15  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC-CCCCcEEEeccCCCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYA   89 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g-~~~~~V~vie~~~~~   89 (306)
                      +|+|||||++||++|..|++.| +   +|+|+|+.+..
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~---~v~v~Er~~~~   36 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHL---NVQLFEAAPAF   36 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCC---CEEEEecCCcC
Confidence            7999999999999999999997 5   89999998653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.53  E-value=7.3e-07  Score=77.81  Aligned_cols=39  Identities=23%  Similarity=0.293  Sum_probs=35.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      +...||+|||+|.+||++|++|.+.|+   +|+|+|.++..+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~---~v~ilEar~r~G   43 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGY---QVQILEARDRVG   43 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCc---EEEEEeccCCcC
Confidence            456899999999999999999999999   999999988865

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.52  E-value=5.4e-07  Score=81.66  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=74.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+....       .  ++     .           +....+.+.+
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~-------~--~d-----~-----------~~~~~l~~~l  217 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGV---QVTLIYRGELILR-------G--FD-----D-----------DMRALLARNM  217 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEeCCCCCc-------c--cC-----H-----------HHHHHHHHHH
Confidence            4689999999999999999999997   9999998654210       0  00     0           0013455667


Q ss_pred             hhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++.+.+++...  ..+.+.++..+.+|.+++|+|..|+.
T Consensus       218 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~  265 (446)
T TIGR01424       218 EGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT  265 (446)
T ss_pred             HHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence            88899999999999987532  34566677789999999999988763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.52  E-value=4.1e-07  Score=81.35  Aligned_cols=34  Identities=26%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+|+|||||++||++|..|++.|+   +|+|+|+.+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~---~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGW---AVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence            689999999999999999999998   9999999865

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.51  E-value=6e-07  Score=81.38  Aligned_cols=98  Identities=19%  Similarity=0.203  Sum_probs=74.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +.+++|||||..|+.+|..|++.|.   +|+++++.+... .  .      ++  .              +....+.+.+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~il-~--~------~d--~--------------~~~~~~~~~l  217 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGS---ETHLVIRHERVL-R--S------FD--S--------------MISETITEEY  217 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCC-c--c------cC--H--------------HHHHHHHHHH
Confidence            4799999999999999999999997   999999875531 0  0      00  0              0013455667


Q ss_pred             hhcCeEEEeCCcEEEEeCCC---CEEEcCCC-cEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSG-KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~---~~v~~~~g-~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++.+.++..+.   ..+.++++ ..+.+|.+++|+|..|+.
T Consensus       218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~  267 (450)
T TIGR01421       218 EKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT  267 (450)
T ss_pred             HHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence            88899999999999987542   24566667 579999999999988774

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.51  E-value=4.6e-06  Score=77.96  Aligned_cols=58  Identities=19%  Similarity=0.157  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+.+.||+++.++.++++..+++|++.+|..   .+|+  .+.++.||+|||-
T Consensus       142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  204 (588)
T PRK08958        142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG  204 (588)
T ss_pred             HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            44567777777778899999999999987545788888865   3564  4779999999984

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.50  E-value=4.7e-06  Score=77.66  Aligned_cols=56  Identities=13%  Similarity=0.046  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G~--~i~~d~vv~a~g~  305 (306)
                      ..+...+.+.+.+.||+++.++.++++.. ++|++.+|...   +|+  .+.++.||+|||-
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  196 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG  196 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence            45666777777778999999999999886 57888888764   333  5789999999984

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.49  E-value=2.1e-06  Score=77.89  Aligned_cols=69  Identities=13%  Similarity=0.233  Sum_probs=57.2

Q ss_pred             cEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          232 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       232 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .-.+..+++..+.   +..+...+.+..++.|+.|+.+++|++|... +++..+|+|..| .|++..+|-|+|.
T Consensus       173 ~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G-~iet~~~VNaaGv  241 (856)
T KOG2844|consen  173 YGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHG-SIETECVVNAAGV  241 (856)
T ss_pred             eeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCc-ceecceEEechhH
Confidence            3456667766554   6678899999999999999999999999974 444449999998 8999999999984

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.48  E-value=9.1e-07  Score=80.59  Aligned_cols=98  Identities=14%  Similarity=0.306  Sum_probs=74.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +.+++|||+|..|+.+|..|++.|.   +|+++++.+...-.            ....             ....+...+
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtli~~~~~~l~~------------~d~~-------------~~~~l~~~L  228 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGV---KVTLVSSRDRVLPG------------EDAD-------------AAEVLEEVF  228 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCcCCCC------------CCHH-------------HHHHHHHHH
Confidence            4689999999999999999999997   99999986542100            0000             013456678


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++++.+++....  .+.+.+++.+++|.+++|+|..|+.
T Consensus       229 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        229 ARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT  276 (466)
T ss_pred             HHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence            889999999999999864333  4556678889999999999988874

>PRK07846 mycothione reductase; Reviewed

Probab=98.47  E-value=8.8e-07  Score=80.29  Aligned_cols=97  Identities=24%  Similarity=0.336  Sum_probs=71.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +.+++|||||+.|+.+|..|++.|.   +|+++++.+... .  .      .+     .++           ...+.. +
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~ll-~--~------~d-----~~~-----------~~~l~~-l  216 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGV---RVTVVNRSGRLL-R--H------LD-----DDI-----------SERFTE-L  216 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc-c--c------cC-----HHH-----------HHHHHH-H
Confidence            4799999999999999999999997   999999876531 0  0      00     000           011222 3


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      .+.++++++++++.+++..+.  .+.+.++..+++|.+++|+|..|+.
T Consensus       217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  264 (451)
T PRK07846        217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG  264 (451)
T ss_pred             HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence            356799999999999976543  4566677889999999999998873

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.47  E-value=2.4e-06  Score=74.60  Aligned_cols=95  Identities=24%  Similarity=0.384  Sum_probs=70.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Cccc--------------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLL--------------------------------------------  243 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~-~~~~--------------------------------------------  243 (306)
                      .|+|||+|..|++.|..+++.|.+|.++... +.+.                                            
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            4899999999999999999999999998332 2221                                            


Q ss_pred             --cc------ccC-HHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          244 --QR------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       244 --~~------~~~-~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                        +.      ..+ ..+...+.+.+++ .+++++. .+|+++.. ++++|.+|.+.+|+.+.+|.||+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence              00      011 2345566677776 5899875 58999987 689999999999999999999999995

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.47  E-value=3.6e-06  Score=77.63  Aligned_cols=97  Identities=27%  Similarity=0.361  Sum_probs=76.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC--Cccc-----------ccccCHHHHHHHHHHHHHcCCEEEcCceEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIK  273 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~  273 (306)
                      ..+|+|||+|+.|+..|..+++.+.+|+++...  ..+.           +....+.+.+.+.+.+++.|++++.+++|.
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~  291 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK  291 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEE
Confidence            467999999999999999999999999988532  1111           111245677788888888999999999999


Q ss_pred             EEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          274 NLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       274 ~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++... ++.+ .+.+.+|+.+.+|.+|+|||.
T Consensus       292 ~I~~~-~~~~-~v~~~~g~~i~~d~lIlAtGa  321 (515)
T TIGR03140       292 KIETE-DGLI-VVTLESGEVLKAKSVIVATGA  321 (515)
T ss_pred             EEEec-CCeE-EEEECCCCEEEeCEEEECCCC
Confidence            99863 3333 577888888999999999995

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.47  E-value=7.6e-06  Score=76.04  Aligned_cols=58  Identities=14%  Similarity=0.157  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+++.||++++++.++++..++++++.++..   .+|+  .+.++.||+|||-
T Consensus       133 G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG  195 (543)
T PRK06263        133 GHEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG  195 (543)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence            45677778888888999999999999987544444777653   4564  4889999999984

>PRK06370 mercuric reductase; Validated

Probab=98.47  E-value=9.5e-07  Score=80.51  Aligned_cols=98  Identities=15%  Similarity=0.245  Sum_probs=73.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++|+|||||+.|+.+|..|.+.|.   +|+++++.+...-.            ..  .           +....+...+
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~~------------~~--~-----------~~~~~l~~~l  222 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGS---EVTVIERGPRLLPR------------ED--E-----------DVAAAVREIL  222 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCCCcc------------cC--H-----------HHHHHHHHHH
Confidence            4799999999999999999999997   99999987653100            00  0           0013455667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEc--C-CCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLIT--N-SGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~--~-~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.++++++++.+.+++..+.  .+.+  . ++..+.+|.+++|+|..|+.
T Consensus       223 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~  273 (463)
T PRK06370        223 EREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT  273 (463)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence            889999999999999986543  2333  2 34579999999999988774

>TIGR02053 MerA mercuric reductase

Probab=98.46  E-value=9.1e-07  Score=80.65  Aligned_cols=98  Identities=18%  Similarity=0.280  Sum_probs=72.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+++|||||.+|+.+|..|.+.|.   +|+++++.+... .          ..+.              +....+...+
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l-~----------~~d~--------------~~~~~l~~~l  217 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGS---EVTILQRSDRLL-P----------REEP--------------EISAAVEEAL  217 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCcCC-C----------ccCH--------------HHHHHHHHHH
Confidence            4789999999999999999999997   999999875531 0          0000              0013455667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcC---CCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~---~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++++++|.+++.++.  .+.+.   ++..+.+|.+++|+|..|+.
T Consensus       218 ~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~  268 (463)
T TIGR02053       218 AEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT  268 (463)
T ss_pred             HHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence            788999999999999876543  33332   23579999999999988774

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN02507 glutathione reductase

Probab=98.46  E-value=1.1e-06  Score=80.70  Aligned_cols=98  Identities=18%  Similarity=0.268  Sum_probs=74.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+... .      .  ++  .              +....+.+.+
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~~l-~------~--~d--~--------------~~~~~l~~~l  254 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGA---TVDLFFRKELPL-R------G--FD--D--------------EMRAVVARNL  254 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEecCCcC-c------c--cC--H--------------HHHHHHHHHH
Confidence            4689999999999999999999997   999999765420 0      0  00  0              0013455667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++.|.+++..+.  .+.+.++..+.+|.+++|+|..|+.
T Consensus       255 ~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        255 EGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT  302 (499)
T ss_pred             HhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence            889999999999999875332  4566677789999999999988774

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.45  E-value=3.6e-06  Score=77.70  Aligned_cols=97  Identities=29%  Similarity=0.371  Sum_probs=77.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC--Cccc-----------ccccCHHHHHHHHHHHHHcCCEEEcCceEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIK  273 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~  273 (306)
                      ...++|||+|+.|+..|..+++.|.+++++...  ..+.           +....+.+.+.+.+.+++.|++++.+++|.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            347999999999999999999999999988653  1110           111245677888899999999999999999


Q ss_pred             EEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          274 NLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       274 ~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++... ++.+ .|.+.+|+.+.+|.+|+|||.
T Consensus       291 ~I~~~-~~~~-~V~~~~g~~i~a~~vViAtG~  320 (517)
T PRK15317        291 KLEPA-AGLI-EVELANGAVLKAKTVILATGA  320 (517)
T ss_pred             EEEec-CCeE-EEEECCCCEEEcCEEEECCCC
Confidence            99873 3443 577888889999999999995

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.45  E-value=3.6e-07  Score=82.52  Aligned_cols=38  Identities=21%  Similarity=0.458  Sum_probs=34.4

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.+++||+||||||+|+++|+.|++.|+   +|+|+|+...
T Consensus        36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~---~VlllEr~~~   73 (450)
T PLN00093         36 SGRKLRVAVIGGGPAGACAAETLAKGGI---ETFLIERKLD   73 (450)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence            4557899999999999999999999999   9999998753

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.45  E-value=1e-05  Score=75.76  Aligned_cols=57  Identities=12%  Similarity=0.144  Sum_probs=43.0

Q ss_pred             CHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+.+ .||+++.++.+.++.. +++++.++..   .+|+  .+.++.||+|||-
T Consensus       136 G~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG  198 (577)
T PRK06069        136 GFYIMHTLYSRALRFDNIHFYDEHFVTSLIV-ENGVFKGVTAIDLKRGEFKVFQAKAGIIATGG  198 (577)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEECCEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCcEEEcCch
Confidence            34566677777665 6999999999999875 4677767653   4564  4789999999984

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.45  E-value=3.5e-06  Score=76.28  Aligned_cols=97  Identities=13%  Similarity=0.123  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc----------------------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------------------------  246 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~----------------------------------------  246 (306)
                      .++|+|||+|++|+-.|..+.+.|.+++++.+++.+.+..                                        
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~   89 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR   89 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence            5789999999999999999999999999998865432110                                        


Q ss_pred             -------------------cCHHHHHHHHHHHHHcCCE--EEcCceEEEEEeCCCCcEEEEEeCCC--C--EEecCEEEE
Q 021871          247 -------------------FTPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDG--S--TIDADTVIL  301 (306)
Q Consensus       247 -------------------~~~~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~~~~v~~v~~~~G--~--~i~~d~vv~  301 (306)
                                         ...++.+.+++.+++.|++  |.++++|++|+. .++++ .|++.++  .  +..+|.||+
T Consensus        90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~-~~~~w-~V~~~~~~~~~~~~~~d~VIv  167 (461)
T PLN02172         90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEP-VDGKW-RVQSKNSGGFSKDEIFDAVVV  167 (461)
T ss_pred             CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEee-cCCeE-EEEEEcCCCceEEEEcCEEEE
Confidence                               0134666677777788888  899999999997 45555 4665433  2  457999999


Q ss_pred             ecCC
Q 021871          302 LPYD  305 (306)
Q Consensus       302 a~g~  305 (306)
                      |||.
T Consensus       168 AtG~  171 (461)
T PLN02172        168 CNGH  171 (461)
T ss_pred             eccC
Confidence            9994

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.45  E-value=2.2e-06  Score=78.82  Aligned_cols=55  Identities=25%  Similarity=0.253  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC--CC--EEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~--G~--~i~~d~vv~a~g~  305 (306)
                      ..+.+.+.+.++ .||+++.++.++++.. +++++.++...+  |+  .+.++.||+|||-
T Consensus       130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG  188 (510)
T PRK08071        130 KNLLEHLLQELV-PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGG  188 (510)
T ss_pred             HHHHHHHHHHHh-cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCC
Confidence            445566666665 6999999999999875 567777776543  33  5789999999984

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.44  E-value=1e-06  Score=80.43  Aligned_cols=98  Identities=13%  Similarity=0.236  Sum_probs=72.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+...-.         .  +   .           +....+...+
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l~~---------~--d---~-----------~~~~~~~~~l  234 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGA---EVTILEALPAFLAA---------A--D---E-----------QVAKEAAKAF  234 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCccCCc---------C--C---H-----------HHHHHHHHHH
Confidence            4799999999999999999999997   99999987643100         0  0   0           0013445667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCC--C--cEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~--g--~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++.|.+++.++.  .+.+.+  +  ..+++|.+++|+|..|+.
T Consensus       235 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~  286 (475)
T PRK06327        235 TKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT  286 (475)
T ss_pred             HHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence            788999999999999986543  334333  3  469999999999988774

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.44  E-value=1.1e-06  Score=80.22  Aligned_cols=98  Identities=23%  Similarity=0.303  Sum_probs=73.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +.+++|||||+.|+.+|..|++.|.   +|+++++.+...            +...  .           +....+.+.+
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l------------~~~d--~-----------~~~~~l~~~l  223 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGV---DVTIVEFLDRAL------------PNED--A-----------EVSKEIAKQY  223 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEecCCCcC------------CccC--H-----------HHHHHHHHHH
Confidence            4699999999999999999999997   999999765421            0000  0           0013456678


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcC--CC--cEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~--~g--~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++.|.+++.++.  .+.+.  ++  ..+.+|.+++|+|..|+.
T Consensus       224 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~  275 (466)
T PRK07818        224 KKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV  275 (466)
T ss_pred             HHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence            889999999999999976543  23332  45  379999999999988763

>PRK08275 putative oxidoreductase; Provisional

Probab=98.44  E-value=9.5e-06  Score=75.54  Aligned_cols=58  Identities=22%  Similarity=0.200  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+++.||+++.++.++++..++++++.+|..   .+|+  .+.++.||+|||-
T Consensus       136 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG  198 (554)
T PRK08275        136 GHDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGA  198 (554)
T ss_pred             hHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCC
Confidence            34567778888888999999999999987643677777763   3564  4789999999985

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.44  E-value=9.1e-07  Score=79.68  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=31.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ..+||+|||+|.|||+||..+. .|.   +|+|+||....
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~---~V~lleK~~~~   38 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDL---KILMVSKGKLN   38 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCC---CEEEEecCCCC
Confidence            3579999999999999999984 676   99999997653

>PRK07538 hypothetical protein; Provisional

Probab=98.43  E-value=6.7e-07  Score=80.31  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=31.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .||+|||||++||++|..|++.|+   +|+|+|+.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGI---EVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC---cEEEEEcCCc
Confidence            389999999999999999999998   9999999865

>PRK06847 hypothetical protein; Provisional

Probab=98.42  E-value=5.7e-06  Score=73.28  Aligned_cols=97  Identities=26%  Similarity=0.326  Sum_probs=76.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------  244 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~------------------------------------------  244 (306)
                      ..+|+|||+|..|+-+|..|++.+.+|+++++.+.+..                                          
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~   83 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT   83 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence            56899999999999999999999999999987653110                                          


Q ss_pred             ---cc----------------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          245 ---RL----------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       245 ---~~----------------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                         ..                ..+.+.+.+.+.+++.|++++.+++|++++.. ++.+ .+.+.+|+++.+|.||.|+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~ad~vI~AdG~  161 (375)
T PRK06847         84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQD-DDGV-TVTFSDGTTGRYDLVVGADGL  161 (375)
T ss_pred             EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCEE-EEEEcCCCEEEcCEEEECcCC
Confidence               00                01244566777777789999999999999864 4444 578888989999999999985

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.42  E-value=1.3e-06  Score=79.69  Aligned_cols=99  Identities=14%  Similarity=0.191  Sum_probs=72.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      .+++++|||||+.|+.+|..|.+.|.   +|+++|+.+...       .+  ++                .+....+.+.
T Consensus       173 ~~~~vvIIGgG~ig~E~A~~l~~~G~---~Vtlie~~~~il-------~~--~d----------------~~~~~~l~~~  224 (466)
T PRK06115        173 VPKHLVVIGAGVIGLELGSVWRRLGA---QVTVVEYLDRIC-------PG--TD----------------TETAKTLQKA  224 (466)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCCCC-------CC--CC----------------HHHHHHHHHH
Confidence            35799999999999999999999997   999999865421       00  00                0001345667


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEcC---C--CcEEecCcEEEeeCCCCcc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---S--GKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~---~--g~~~~~~~lila~G~~~~~  176 (306)
                      +++.+++++.++.+.++...+.  .+.+.   +  +..+.+|.+++|+|..|+.
T Consensus       225 l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~  278 (466)
T PRK06115        225 LTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT  278 (466)
T ss_pred             HHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence            7888999999999999976433  23322   2  3479999999999988763

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.42  E-value=6.9e-06  Score=68.58  Aligned_cols=99  Identities=21%  Similarity=0.185  Sum_probs=75.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------ccCH
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP  249 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-------------------------------------~~~~  249 (306)
                      .-.|+|||+|+.|+-.|..+++.+.+|.++.+...+...                                     ....
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~  104 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV  104 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence            346999999999999999999999999999987553210                                     0123


Q ss_pred             HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC-----------CCEEecCEEEEecCC
Q 021871          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-----------GSTIDADTVILLPYD  305 (306)
Q Consensus       250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~-----------G~~i~~d~vv~a~g~  305 (306)
                      .+...+.+.+.+.|++++.++.|.++...+++++.++....           ...+.++.||.|||.
T Consensus       105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~  171 (257)
T PRK04176        105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH  171 (257)
T ss_pred             HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC
Confidence            45566777888899999999999998764454666665431           236899999999995

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.41  E-value=1.1e-06  Score=84.74  Aligned_cols=99  Identities=16%  Similarity=0.233  Sum_probs=75.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|++.|.   +|+|+++.+.. +.      ..+ +  .              .....+...+
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~---~Vtvv~~~~~l-l~------~~l-d--~--------------~~~~~l~~~l  192 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGM---DVSVIHHAPGL-MA------KQL-D--Q--------------TAGRLLQREL  192 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC---eEEEEccCCch-hh------hhc-C--H--------------HHHHHHHHHH
Confidence            4689999999999999999999998   99999976542 00      000 0  0              0013456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.|+++++++.+.++..+..  .+.+.+|..+.+|.+|+|+|..|+.
T Consensus       193 ~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~  240 (785)
T TIGR02374       193 EQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPND  240 (785)
T ss_pred             HHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCc
Confidence            889999999999988876543  5777888899999999999988763

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.41  E-value=1.1e-06  Score=82.64  Aligned_cols=37  Identities=22%  Similarity=0.252  Sum_probs=33.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~~   88 (306)
                      .+.+||+||||||+||++|..|++. |+   +|+|+|+.+.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi---~v~IiE~~~~   67 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDI---TTRIVERKPG   67 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCC---cEEEEEcCCC
Confidence            3468999999999999999999995 98   9999999865

>PRK14694 putative mercuric reductase; Provisional

Probab=98.40  E-value=1.5e-06  Score=79.35  Aligned_cols=96  Identities=24%  Similarity=0.383  Sum_probs=71.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+++|||+|+.|+.+|..|++.|.   +|+++++....  .          ..+      +        +....+.+.+
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~---~Vtlv~~~~~l--~----------~~~------~--------~~~~~l~~~l  228 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGS---RVTVLARSRVL--S----------QED------P--------AVGEAIEAAF  228 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEECCCCC--C----------CCC------H--------HHHHHHHHHH
Confidence            4699999999999999999999997   99999864221  0          000      0        0013456678


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCE--EEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~--v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.|++++.++.+.+++.++..  +.+++ ..+.+|.+++|+|..|+.
T Consensus       229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        229 RREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNT  275 (468)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCc
Confidence            8899999999999998865543  33333 469999999999998874

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.40  E-value=1.6e-06  Score=80.96  Aligned_cols=38  Identities=29%  Similarity=0.274  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+||+|||||.|||+||.++++.|. ..+|+|+||...
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~   39 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP   39 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence            35799999999999999999998862 339999999765

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.39  E-value=1.7e-05  Score=74.47  Aligned_cols=57  Identities=16%  Similarity=0.159  Sum_probs=42.2

Q ss_pred             CHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCCCcEEEEE---eCCCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~v~~v~---~~~G~--~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+++.+ |+++.++.|..+.. +++++.+|.   ..+|+  .+.++.||+|||-
T Consensus       131 G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  193 (608)
T PRK06854        131 GESYKPIVAEAAKKALGDNVLNRVFITDLLV-DDNRIAGAVGFSVRENKFYVFKAKAVIVATGG  193 (608)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-eCCEEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence            3455666767777765 99999999999875 456666664   34554  5889999999994

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.39  E-value=9e-07  Score=76.72  Aligned_cols=55  Identities=15%  Similarity=0.312  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEec
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP  303 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~  303 (306)
                      ...+...+.+.+++.|.+|.+++.|.+|.. ++|++.+|.+.+|+++.+..||..+
T Consensus       263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNA  317 (561)
T KOG4254|consen  263 MGAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNA  317 (561)
T ss_pred             hhHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCC
Confidence            456788899999999999999999999997 6799999999999999998888644

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.39  E-value=5.1e-07  Score=78.71  Aligned_cols=116  Identities=21%  Similarity=0.339  Sum_probs=62.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEec-cCCCCCCC--CCcc---c-----------cccccC---CCCCCCCC-
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVS-KEAYAPYE--RPAL---T-----------KGYLFP---LDKKPARL-  111 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie-~~~~~~~~--~~~~---~-----------~~~~~~---~~~~~~~~-  111 (306)
                      ||+|||||+||+.||+.+++.|.   +|.++. +.+....-  .+.+   .           +|.+..   ......++ 
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~---~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l   77 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGA---KVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML   77 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC---CEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence            79999999999999999999998   899993 33332210  0110   0           011100   00000000 


Q ss_pred             -----CCcccccCCCCCc----CChhHHhh-cCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCcEEEeeCC
Q 021871          112 -----PGFHTCVGSGGER----QTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC  172 (306)
Q Consensus       112 -----~~~~~~~~~~~~~----~~~~~~~~-~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~lila~G~  172 (306)
                           |.....+......    .+.+.++. .++++. +.+|.++..++.   .|.+.+|..+.++.+|+|||.
T Consensus        78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                 0000000000011    22223333 478886 558999977554   477889999999999999997

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.39  E-value=1.8e-06  Score=78.76  Aligned_cols=98  Identities=17%  Similarity=0.283  Sum_probs=72.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc---CCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCCh
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (306)
                      +.+++|||||+.|+.+|..+...   |.   +|+++++.+...-.         ++     .           +....+.
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~---~Vtli~~~~~il~~---------~d-----~-----------~~~~~l~  238 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGG---KVTLCYRNNMILRG---------FD-----S-----------TLRKELT  238 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCC---eEEEEecCCccccc---------cC-----H-----------HHHHHHH
Confidence            47899999999999999877665   65   99999987653100         00     0           0023456


Q ss_pred             hHHhhcCeEEEeCCcEEEEeCCC---CEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          128 EWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       128 ~~~~~~~v~~~~~~~v~~v~~~~---~~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ..+++.+++++.++.+.++....   ..+.+.++..+.+|.+++|+|..|+.
T Consensus       239 ~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~  290 (486)
T TIGR01423       239 KQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT  290 (486)
T ss_pred             HHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence            67888999999999999987532   24566677789999999999988763

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR00551 nadB L-aspartate oxidase

Probab=98.38  E-value=9e-06  Score=74.54  Aligned_cols=57  Identities=19%  Similarity=0.240  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCC-C--CEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~-G--~~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+++ .||+++.++.++++.. +++.+.++...+ +  ..+.++.||+|||-
T Consensus       127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG  187 (488)
T TIGR00551       127 GREVITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGG  187 (488)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence            35677778888877 6999999999999985 466666666554 3  36889999999984

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.37  E-value=1.6e-06  Score=83.86  Aligned_cols=99  Identities=20%  Similarity=0.212  Sum_probs=75.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|++.|.   +|+|++..+...-.       .+   +              ......+.+.+
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~---~VtvVe~~~~ll~~-------~l---d--------------~~~~~~l~~~L  197 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGV---ETHVIEFAPMLMAE-------QL---D--------------QMGGEQLRRKI  197 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeccccchhh-------hc---C--------------HHHHHHHHHHH
Confidence            4689999999999999999999998   89999976542000       00   0              00013456778


Q ss_pred             hhcCeEEEeCCcEEEEeCCC----CEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~----~~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.|++++++..+.++..++    ..+.+.+|+.+.+|.+++|+|..|+.
T Consensus       198 ~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~  247 (847)
T PRK14989        198 ESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD  247 (847)
T ss_pred             HHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence            88999999999999886532    24677888899999999999988874

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.37  E-value=2.1e-06  Score=79.60  Aligned_cols=36  Identities=33%  Similarity=0.413  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+||+|||+|.|||+||..+++.|.   +|+|+||...
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~---~VilleK~~~   50 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGR---RVLVVTKAAL   50 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC---eEEEEEccCC
Confidence            45899999999999999999999997   9999999765

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.36  E-value=2.3e-06  Score=77.50  Aligned_cols=97  Identities=18%  Similarity=0.318  Sum_probs=72.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+++|||||+.|+.+|..|.+.|.   +|+++++.+...            +...  .           +....+.+.+
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l------------~~~~--~-----------~~~~~l~~~l  209 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGS---KVTILEAASLFL------------PRED--R-----------DIADNIATIL  209 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC------------CCcC--H-----------HHHHHHHHHH
Confidence            4689999999999999999999997   999999865421            0000  0           0013456678


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCE--EEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~--v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.++++++++++.+++.++..  +..+++ .+.+|.+++|+|..|+.
T Consensus       210 ~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        210 RDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT  256 (441)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence            8899999999999999765443  333444 58999999999988874

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.35  E-value=1.7e-06  Score=75.79  Aligned_cols=99  Identities=22%  Similarity=0.354  Sum_probs=79.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ...|++||+|..|+.+|..|...++   +|+++++++.. +.+       ++.                ....+.+..++
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~---~VT~V~~e~~~-~~~-------lf~----------------~~i~~~~~~y~  265 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAK---SVTVVFPEPWL-LPR-------LFG----------------PSIGQFYEDYY  265 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCc---eEEEEccCccc-hhh-------hhh----------------HHHHHHHHHHH
Confidence            5689999999999999999999988   99999998763 110       111                11135677889


Q ss_pred             hhcCeEEEeCCcEEEEeCCC--C--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~--~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++.+.+...+.  +  .+.+.+++.+.+|.|++.+|..|..
T Consensus       266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t  315 (478)
T KOG1336|consen  266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT  315 (478)
T ss_pred             HhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence            99999999999988887654  2  5788899999999999999999874

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.34  E-value=1.7e-05  Score=65.96  Aligned_cols=99  Identities=19%  Similarity=0.162  Sum_probs=76.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------ccCH
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP  249 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-------------------------------------~~~~  249 (306)
                      .-.|+|||+|+.|+-.|..+++.+.+|.++.++..+...                                     ....
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~  100 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA  100 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence            456999999999999999999999999999987653210                                     0123


Q ss_pred             HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCC-cEEEEEeCC-----------CCEEecCEEEEecCC
Q 021871          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLED-----------GSTIDADTVILLPYD  305 (306)
Q Consensus       250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~v~~v~~~~-----------G~~i~~d~vv~a~g~  305 (306)
                      .+.+.+.+.+.+.|++++.++.|..+...+++ ++.+|.+..           ...++++.||.|||.
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~  168 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH  168 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence            45567777888899999999999998864442 577777642           236899999999995

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR03452 mycothione_red mycothione reductase

Probab=98.33  E-value=3.2e-06  Score=76.72  Aligned_cols=97  Identities=26%  Similarity=0.358  Sum_probs=70.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|.+.|.   +|+++++.+... .       . .+     .++           ...+.. +
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~ll-~-------~-~d-----~~~-----------~~~l~~-~  219 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGT---RVTIVNRSTKLL-R-------H-LD-----EDI-----------SDRFTE-I  219 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCccc-c-------c-cC-----HHH-----------HHHHHH-H
Confidence            4799999999999999999999997   999999875421 0       0 00     000           012222 2


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      .+.+++++.++++.+++.++.  .+.+.+++.+++|.+++|+|..|+.
T Consensus       220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG  267 (452)
T ss_pred             HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence            345799999999999976443  4555677789999999999988764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.33  E-value=3.2e-06  Score=77.63  Aligned_cols=97  Identities=15%  Similarity=0.194  Sum_probs=72.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +.+++|||||+.|+.+|..|++.|.   +|+++++...  +.  ..      +  .              +....+...+
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~--l~--~~------d--~--------------~~~~~l~~~l  232 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGF---DVTVAVRSIP--LR--GF------D--R--------------QCSEKVVEYM  232 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCcc--cc--cC------C--H--------------HHHHHHHHHH
Confidence            4589999999999999999999997   9999986321  11  00      0  0              0013456678


Q ss_pred             hhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++.+.++....  ..+.+.+++.+.+|.+++|+|..|+.
T Consensus       233 ~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~  280 (499)
T PTZ00052        233 KEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI  280 (499)
T ss_pred             HHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence            88999999998888776533  24566677789999999999988774

>PTZ00058 glutathione reductase; Provisional

Probab=98.32  E-value=3.5e-06  Score=77.97  Aligned_cols=97  Identities=18%  Similarity=0.186  Sum_probs=72.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+|+|||||+.|+.+|..|.+.|.   +|+++++.+... .  .      ++  .              +....+.+.+
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~---~Vtli~~~~~il-~--~------~d--~--------------~i~~~l~~~L  288 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGA---ESYIFARGNRLL-R--K------FD--E--------------TIINELENDM  288 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC---cEEEEEeccccc-c--c------CC--H--------------HHHHHHHHHH
Confidence            5799999999999999999999997   999999875421 0  0      00  0              0013455677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC---EEEcCC-CcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ---TLITNS-GKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~---~v~~~~-g~~~~~~~lila~G~~~~  175 (306)
                      ++.|++++.+..+.+++..+.   .+...+ +..+.+|.+++|+|..|+
T Consensus       289 ~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn  337 (561)
T PTZ00058        289 KKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN  337 (561)
T ss_pred             HHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence            889999999999999875432   233333 457999999999998776

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.30  E-value=7.2e-06  Score=74.40  Aligned_cols=95  Identities=19%  Similarity=0.342  Sum_probs=68.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCccc------cccc----C--HHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL------QRLF----T--PSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~------~~~~----~--~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      +|+|||+|..|+.+|..|++.+  .+|+++.+.+.+.      +...    .  ..+.....+.+++.|++++.++.|++
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~   81 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK   81 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence            6999999999999999998875  3799999987641      1100    1  11223334567888999999999999


Q ss_pred             EEeCCCCcEEEEEe-CCCCEEe--cCEEEEecCC
Q 021871          275 LEAGSDGRVAAVKL-EDGSTID--ADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~~-~~G~~i~--~d~vv~a~g~  305 (306)
                      |+. ++..+ .+.. .+|+.++  +|.+|+|||.
T Consensus        82 id~-~~~~v-~~~~~~~~~~~~~~yd~lviAtG~  113 (444)
T PRK09564         82 VDA-KNKTI-TVKNLKTGSIFNDTYDKLMIATGA  113 (444)
T ss_pred             EEC-CCCEE-EEEECCCCCEEEecCCEEEECCCC
Confidence            986 34333 3433 2355666  9999999996

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.30  E-value=1.4e-05  Score=68.09  Aligned_cols=95  Identities=22%  Similarity=0.253  Sum_probs=72.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc---------------------------------------c----
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------------R----  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~---------------------------------------~----  245 (306)
                      .|+|||+|..|+-+|..|++.+.+|+++++.+....                                       .    
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            489999999999999999999999999998854210                                       0    


Q ss_pred             ------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-CCCEEecCEEEEecCC
Q 021871          246 ------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTVILLPYD  305 (306)
Q Consensus       246 ------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-~G~~i~~d~vv~a~g~  305 (306)
                            .....+.+.+.+.+++.|++++.+++++++...++ .+ .+.+. ++.++.+|.||.|+|.
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~a~~vv~a~G~  146 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RV-VVIVRGGEGTVTAKIVIGADGS  146 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EE-EEEEcCccEEEEeCEEEECCCc
Confidence                  01234566778888889999999999999886444 33 34333 3457999999999985

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.28  E-value=5.6e-06  Score=73.07  Aligned_cols=92  Identities=20%  Similarity=0.251  Sum_probs=68.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCccccc-cc---------CHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          209 KVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQR-LF---------TPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~---~~~v~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      +|+|||+|..|+.+|..+.+.   ..+|+++.+.+...-. .+         ..++...+.+.+++.|++++.+ .|++|
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            589999999999999998643   4689999988764211 00         1223334566677789999886 79999


Q ss_pred             EeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          276 EAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.. + +  .|.+.+|+++.+|.+|+|||.
T Consensus        80 d~~-~-~--~V~~~~g~~~~yD~LviAtG~  105 (364)
T TIGR03169        80 DPD-R-R--KVLLANRPPLSYDVLSLDVGS  105 (364)
T ss_pred             ecc-c-C--EEEECCCCcccccEEEEccCC
Confidence            852 3 3  477888889999999999995

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.28  E-value=4.5e-06  Score=67.04  Aligned_cols=96  Identities=19%  Similarity=0.270  Sum_probs=68.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--ccC-----------HHHH--H--HHHHHHHHcCCEEEcCce
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--LFT-----------PSLA--Q--RYEQLYQQNGVKFVKGAS  271 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--~~~-----------~~~~--~--~~~~~~~~~gv~i~~~~~  271 (306)
                      +|+|||+|+.|+.+|..|+..+.+++++.+.+.....  ...           ....  +  .+.+.+++.+++++.+++
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            5899999999999999999999999999776542110  000           0011  1  444556788999999999


Q ss_pred             EEEEEeCCCCc-------EEEEEeCCCCEEecCEEEEecCC
Q 021871          272 IKNLEAGSDGR-------VAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       272 v~~i~~~~~~~-------v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.+++.. .+.       +......++..+.+|.+|+|||.
T Consensus        81 v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~  120 (201)
T PF07992_consen   81 VVSIDPE-SKRVVCPAVTIQVVETGDGREIKYDYLVIATGS  120 (201)
T ss_dssp             EEEEEES-TTEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred             ccccccc-ccccccCcccceeeccCCceEecCCeeeecCcc
Confidence            9999873 442       11224455668999999999994

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.28  E-value=8.2e-06  Score=73.47  Aligned_cols=97  Identities=19%  Similarity=0.286  Sum_probs=69.2

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccccc----------CHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      ..++|+|||+|..|+.+|..|.....+|+++.+.+.+.-...          ...+...+.+.++..+++++.+ +|++|
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I   87 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV   87 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence            356899999999999999999766678999998877532111          1223334556666778888765 89999


Q ss_pred             EeCCCCcEEEEEe--------CCCCEEecCEEEEecCC
Q 021871          276 EAGSDGRVAAVKL--------EDGSTIDADTVILLPYD  305 (306)
Q Consensus       276 ~~~~~~~v~~v~~--------~~G~~i~~d~vv~a~g~  305 (306)
                      +. ++..+ .+..        .+|.++++|.+|+|||.
T Consensus        88 d~-~~~~v-~~~~~~~~~~~~~~g~~i~yD~LViAtGs  123 (424)
T PTZ00318         88 DF-EEKRV-KCGVVSKSNNANVNTFSVPYDKLVVAHGA  123 (424)
T ss_pred             Ec-CCCEE-EEecccccccccCCceEecCCEEEECCCc
Confidence            96 34433 2311        45668999999999996

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.27  E-value=2e-05  Score=72.58  Aligned_cols=57  Identities=21%  Similarity=0.318  Sum_probs=43.7

Q ss_pred             CHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCC-CC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~-G~--~i~~d~vv~a~g~  305 (306)
                      ...+.+.+.+.++++ ||+++.++.++++.. +++++.++...+ ++  .+.++.||+|||-
T Consensus       135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG  195 (513)
T PRK07512        135 GAAIMRALIAAVRATPSITVLEGAEARRLLV-DDGAVAGVLAATAGGPVVLPARAVVLATGG  195 (513)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECcChhheee-cCCEEEEEEEEeCCeEEEEECCEEEEcCCC
Confidence            446777777777765 999999999999875 467777776643 32  5889999999984

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.27  E-value=1.8e-05  Score=71.57  Aligned_cols=58  Identities=16%  Similarity=0.211  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC-CCcEEEEEeCCC-CEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLEDG-STIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~v~~v~~~~G-~~i~~d~vv~a~g~  305 (306)
                      ...+.+.+.+.+++.|++++++++|+++...+ ++.+++|...++ ..+.++.||+|||-
T Consensus       122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG  181 (432)
T TIGR02485       122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG  181 (432)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence            45677888888999999999999999988643 577777776443 47899999999983

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK13748 putative mercuric reductase; Provisional

Probab=98.27  E-value=3.9e-06  Score=78.44  Aligned_cols=96  Identities=20%  Similarity=0.296  Sum_probs=71.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +++++|||||+.|+.+|..|.+.|.   +|+++++....  .          ..+   ..           ....+.+.+
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l--~----------~~d---~~-----------~~~~l~~~l  320 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGS---KVTILARSTLF--F----------RED---PA-----------IGEAVTAAF  320 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCccc--c----------ccC---HH-----------HHHHHHHHH
Confidence            4689999999999999999999997   99999974221  0          000   00           013456778


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCE--EEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~--v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++.+.++..++..  +.++++ .+.+|.+++|+|..|+.
T Consensus       321 ~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        321 RAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT  367 (561)
T ss_pred             HHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence            8899999999999988754433  333444 69999999999988874

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.26  E-value=4.5e-05  Score=71.56  Aligned_cols=56  Identities=20%  Similarity=0.189  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHH----HcCCEEEcCceEEEEEeCCCCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871          250 SLAQRYEQLYQ----QNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTVILLPYD  305 (306)
Q Consensus       250 ~~~~~~~~~~~----~~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G~--~i~~d~vv~a~g~  305 (306)
                      .+...+.+.++    +.||+++.+++++++..++++++.+|...   +|+  .+.++.||+|||-
T Consensus       130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG  194 (603)
T TIGR01811       130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG  194 (603)
T ss_pred             HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence            34444444443    34899999999999875456688888764   454  5789999999984

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.26  E-value=1.8e-06  Score=70.69  Aligned_cols=57  Identities=23%  Similarity=0.288  Sum_probs=40.8

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCC---CCCcEEEeccCCCCCCCCCccccccccCCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEAYAPYERPALTKGYLFPLD  105 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~---~~~~V~vie~~~~~~~~~~~~~~~~~~~~~  105 (306)
                      +..+++|+|||||+.|..+|++|.+++-   ...+|+++|+....+- ..+...|++..|.
T Consensus         7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g-aSGkasgfLa~wc   66 (380)
T KOG2852|consen    7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG-ASGKASGFLAKWC   66 (380)
T ss_pred             cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc-cccccchhhHhhh
Confidence            4456899999999999999999999872   1238999999866432 2344445554433

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.26  E-value=3.9e-06  Score=75.15  Aligned_cols=98  Identities=18%  Similarity=0.322  Sum_probs=77.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+++|||+|+.||.+|..|+++|+   +|+++|+.+...-.        ++.        +.        ....+...+
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~---~v~l~e~~~~~~~~--------~~~--------~~--------~~~~~~~~l  188 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGK---KVTLIEAADRLGGQ--------LLD--------PE--------VAEELAELL  188 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcccccchh--------hhh--------HH--------HHHHHHHHH
Confidence            4799999999999999999999998   99999988664211        100        00        024577788


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCE-----EEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~-----v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.+++++++..+..++.....     +...++..+.+|.+++++|..|+
T Consensus       189 ~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         189 EKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             HHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence            8899999999999999986542     46667778999999999999885

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.25  E-value=5.6e-06  Score=75.66  Aligned_cols=97  Identities=14%  Similarity=0.205  Sum_probs=70.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +.+++|||||+.|+.+|..|++.|.   +|+++++. .. +.  .      ++  .              +....+.+.+
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~-~~-l~--~------~d--~--------------~~~~~l~~~L  230 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGL---DVTVMVRS-IL-LR--G------FD--Q--------------DCANKVGEHM  230 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCC---cEEEEEec-cc-cc--c------cC--H--------------HHHHHHHHHH
Confidence            4589999999999999999999997   99999863 21 10  0      00  0              0013456678


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCC---cEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g---~~~~~~~lila~G~~~~~  176 (306)
                      ++.++++++++.+.++...+.  .+.+.++   ..+.+|.+++|+|..|+.
T Consensus       231 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~  281 (484)
T TIGR01438       231 EEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT  281 (484)
T ss_pred             HHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence            889999999988888765433  3444444   379999999999988774

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.25  E-value=5e-06  Score=75.79  Aligned_cols=98  Identities=12%  Similarity=0.205  Sum_probs=71.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      .+++++|||||+.|+.+|..|.+.|.   +|+++++.+... .       . ++                .+....+.+.
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l-~-------~-~d----------------~~~~~~~~~~  219 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGV---KVTVFERGDRIL-P-------L-ED----------------PEVSKQAQKI  219 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC-c-------c-hh----------------HHHHHHHHHH
Confidence            35799999999999999999999997   899999876531 0       0 00                0001345566


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC-EEE--cCC--CcEEecCcEEEeeCCCCcc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ-TLI--TNS--GKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~-~v~--~~~--g~~~~~~~lila~G~~~~~  176 (306)
                      +++. +++++++++.+++..+. .+.  ..+  +..+.+|.+++|+|..|+.
T Consensus       220 l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~  270 (460)
T PRK06292        220 LSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT  270 (460)
T ss_pred             Hhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence            7777 99999999999976543 333  222  3479999999999988774

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.24  E-value=7.5e-06  Score=75.38  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=30.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +||+|||||++|+.+|..+++.|.   +|+++|+..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~---~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGA---KTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC---CEEEEeccc
Confidence            599999999999999999999998   999999864

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.24  E-value=5.5e-05  Score=76.21  Aligned_cols=37  Identities=30%  Similarity=0.356  Sum_probs=33.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ..+||||||+|.||++||..+++.|.   +|+|+||....
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga---~VivlEK~~~~  444 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGA---QVILLEKEAKL  444 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEccCCC
Confidence            45899999999999999999999998   99999998654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.23  E-value=6.2e-06  Score=75.26  Aligned_cols=97  Identities=13%  Similarity=0.236  Sum_probs=69.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+++|||||+.|+.+|..|.+.|.   +|+++++.+...-           ..+   .           +....+...+
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~il~-----------~~d---~-----------~~~~~~~~~l  225 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGS---EVDVVEMFDQVIP-----------AAD---K-----------DIVKVFTKRI  225 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEecCCCCCC-----------cCC---H-----------HHHHHHHHHH
Confidence            4699999999999999999999998   9999998765310           000   0           0012344556


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCC--C--cEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~--g--~~~~~~~lila~G~~~~~  176 (306)
                      ++. +.++.++.+..+...+.  .+.+.+  +  ..+++|.+++|+|..|+.
T Consensus       226 ~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~  276 (471)
T PRK06467        226 KKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG  276 (471)
T ss_pred             hhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence            666 99999999998875433  343333  2  369999999999988774

>PRK14727 putative mercuric reductase; Provisional

Probab=98.23  E-value=4.8e-06  Score=76.20  Aligned_cols=96  Identities=19%  Similarity=0.325  Sum_probs=70.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +++++|||||+.|+.+|..|.+.|.   +|+++++....  .          ..+.              .....+.+.+
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~l--~----------~~d~--------------~~~~~l~~~L  238 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGS---RVTILARSTLL--F----------REDP--------------LLGETLTACF  238 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEEcCCCC--C----------cchH--------------HHHHHHHHHH
Confidence            4689999999999999999999997   99999864211  0          0000              0013456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++.+..+...+.  .+...++ .+.+|.+++|+|..|+.
T Consensus       239 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        239 EKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT  285 (479)
T ss_pred             HhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence            889999999999988875443  3444444 58999999999998864

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.22  E-value=9.4e-06  Score=71.23  Aligned_cols=94  Identities=24%  Similarity=0.428  Sum_probs=74.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCccccc----------ccCHHHHHHHHHHHHHcC-CEEEcCceEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQR----------LFTPSLAQRYEQLYQQNG-VKFVKGASIK  273 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g-v~i~~~~~v~  273 (306)
                      .++++|+|+|..|+..+..|.+..  .+++++.+.+...-.          .....+...+.+.++..+ |+++.+ +|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence            478999999999999999999875  889999999875421          112345556788888665 999988 799


Q ss_pred             EEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          274 NLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       274 ~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +|+.  +++  .|.+.+++.+.+|.+|+|+|.
T Consensus        82 ~ID~--~~k--~V~~~~~~~i~YD~LVvalGs  109 (405)
T COG1252          82 DIDR--DAK--KVTLADLGEISYDYLVVALGS  109 (405)
T ss_pred             EEcc--cCC--EEEeCCCccccccEEEEecCC
Confidence            9995  333  477888778999999999985

>PLN02463 lycopene beta cyclase

Probab=98.21  E-value=2.5e-05  Score=70.41  Aligned_cols=95  Identities=26%  Similarity=0.299  Sum_probs=72.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-cc-----------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QR-----------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-~~-----------------------------------------  245 (306)
                      -.|+|||+|+.|.-+|..+++.+.+|.++.+.+... +.                                         
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            368999999999999999999999999998864211 00                                         


Q ss_pred             --ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          246 --LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       246 --~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                        .....+.+.+.+.+.+.|++++ .++|++|+.. ++.+ .|.+++|+++.+|.||.|+|.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~-~~~~-~V~~~dG~~i~A~lVI~AdG~  167 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHE-ESKS-LVVCDDGVKIQASLVLDATGF  167 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEc-CCeE-EEEECCCCEEEcCEEEECcCC
Confidence              0012334556666677899997 4689999974 4443 688899989999999999985

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.20  E-value=2e-05  Score=72.51  Aligned_cols=97  Identities=20%  Similarity=0.256  Sum_probs=70.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc-----------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------------------------------  246 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~-----------------------------------------  246 (306)
                      ++|+|||+|.+|+-.+..+.+.|.+++++++.+.+.+-.                                         
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            689999999999999999999999999999987654210                                         


Q ss_pred             cCHHHHHHHHHHHHHcCC--EEEcCceEEEEEeCCC----CcEEEEEeCCCC---EEecCEEEEecCC
Q 021871          247 FTPSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSD----GRVAAVKLEDGS---TIDADTVILLPYD  305 (306)
Q Consensus       247 ~~~~~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~~----~~v~~v~~~~G~---~i~~d~vv~a~g~  305 (306)
                      ...++.+.++..+++.+.  .|.++++|++++..++    +++ .|++.++.   +..+|.||+|||.
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W-~V~~~~~g~~~~~~fD~VvvatG~  148 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKW-EVTTENDGKEETEEFDAVVVATGH  148 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEE-EEEETTTTEEEEEEECEEEEEE-S
T ss_pred             CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceE-EEEeecCCeEEEEEeCeEEEcCCC
Confidence            013567777777777665  5889999999986443    566 46665542   3568999999996

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.20  E-value=6.2e-06  Score=72.41  Aligned_cols=100  Identities=16%  Similarity=0.132  Sum_probs=69.3

Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc--------cCHHHHHHHHHHHHHcCCEEEcCceEEEEE
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  276 (306)
                      ..+++|+|||+|+.|++.|..+++.+.+++++.+.+.+.+..        .+........+.+.+.|++++.++.+..+.
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~   95 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGE   95 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeecc
Confidence            357899999999999999999999999999999987764321        122333445566777799999998886653


Q ss_pred             e---CCCCcEE--EEEeCCCCEEecCEEEEecCC
Q 021871          277 A---GSDGRVA--AVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       277 ~---~~~~~v~--~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .   ..++...  .+..+ +..+.+|.||+|||.
T Consensus        96 ~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs  128 (352)
T PRK12770         96 PLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGT  128 (352)
T ss_pred             ccccccccccccccCCHH-HHHhhCCEEEEEeCC
Confidence            2   1111110  01112 224789999999995

>PLN02546 glutathione reductase

Probab=98.19  E-value=9.6e-06  Score=75.11  Aligned_cols=99  Identities=21%  Similarity=0.234  Sum_probs=71.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ...+|+|||||+.|+.+|..|.+.+.   +|+++++.+...-.         ++                .+....+...
T Consensus       251 ~~k~V~VIGgG~iGvE~A~~L~~~g~---~Vtlv~~~~~il~~---------~d----------------~~~~~~l~~~  302 (558)
T PLN02546        251 KPEKIAIVGGGYIALEFAGIFNGLKS---DVHVFIRQKKVLRG---------FD----------------EEVRDFVAEQ  302 (558)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeccccccc---------cC----------------HHHHHHHHHH
Confidence            35699999999999999999999987   99999986542100         00                0001345566


Q ss_pred             HhhcCeEEEeCCcEEEEeCC-CC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          130 YKEKGIEMIYQDPVTSIDIE-KQ--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~-~~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      +++.|++++.++.+.++... +.  .+.+.++....+|.+++|+|..++.
T Consensus       303 L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt  352 (558)
T PLN02546        303 MSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT  352 (558)
T ss_pred             HHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence            78899999999999888642 22  3344444445589999999988774

>PRK06834 hypothetical protein; Provisional

Probab=98.16  E-value=5.1e-05  Score=69.52  Aligned_cols=96  Identities=22%  Similarity=0.304  Sum_probs=73.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc---cc---------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QR---------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~---~~---------------------------------------  245 (306)
                      ..|+|||+|++|+-+|..|++.|.+|+++++.+...   ++                                       
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            469999999999999999999999999998765311   00                                       


Q ss_pred             --cc-----------CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          246 --LF-----------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       246 --~~-----------~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                        ..           ...+.+.+.+.+++.|++++.+++|++++.+++ .+ .+++.+|+++.+|.||.|.|.
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~-~v-~v~~~~g~~i~a~~vVgADG~  154 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDT-GV-DVELSDGRTLRAQYLVGCDGG  154 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-eE-EEEECCCCEEEeCEEEEecCC
Confidence              00           012334455667778999999999999997444 44 477778888999999999985

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.14  E-value=1.3e-05  Score=74.93  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=31.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+||+|||||.|||+||..+++.+. ..+|+|+||...
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~-g~~V~lleK~~~   40 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANP-NLKIALISKVYP   40 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccCC
Confidence            4799999999999999999998852 339999999754

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.12  E-value=1.4e-05  Score=75.30  Aligned_cols=98  Identities=15%  Similarity=0.077  Sum_probs=69.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH-
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW-  129 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  129 (306)
                      ..+|+|||||+.|+.+|..|.+.|.   +|+++++.+...-        . ++  .              +....+... 
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~---eVTLIe~~~~ll~--------~-~d--~--------------eis~~l~~~l  363 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGS---EVVSFEYSPQLLP--------L-LD--A--------------DVAKYFERVF  363 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCC---eEEEEeccCcccc--------c-CC--H--------------HHHHHHHHHH
Confidence            4689999999999999999999997   9999998765310        0 00  0              001223333 


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC----EEEcC-------CC--------cEEecCcEEEeeCCCCcc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ----TLITN-------SG--------KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~----~v~~~-------~g--------~~~~~~~lila~G~~~~~  176 (306)
                      +++.+++++.++.|.++.....    .+.+.       ++        +.+++|.+++|+|..|+.
T Consensus       364 l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt  429 (659)
T PTZ00153        364 LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNT  429 (659)
T ss_pred             hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCC
Confidence            3568899999999999876432    22221       11        269999999999988874

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.11  E-value=0.00012  Score=64.55  Aligned_cols=55  Identities=20%  Similarity=0.352  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeC---CC--CEEecCEEEEecC
Q 021871          249 PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTVILLPY  304 (306)
Q Consensus       249 ~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G--~~i~~d~vv~a~g  304 (306)
                      ..+.+.+.+.+++. |++++++++|+.|+..+||.+ .|.+.   +|  ..+.++.|++..|
T Consensus       181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAG  241 (488)
T PF06039_consen  181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAG  241 (488)
T ss_pred             HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCc
Confidence            34566677777777 999999999999999888866 35542   23  4799999999876

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.11  E-value=6.8e-05  Score=67.63  Aligned_cols=95  Identities=24%  Similarity=0.328  Sum_probs=71.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc------------------cc-----c-------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QR-----L-------------------  246 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~------------------~~-----~-------------------  246 (306)
                      .|+|||+|+.|.-+|..|++.|.+|.++++.+...                  +.     .                   
T Consensus         7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (428)
T PRK10157          7 DAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAM   86 (428)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCce
Confidence            68999999999999999999999999998764321                  00     0                   


Q ss_pred             -------------------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          247 -------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       247 -------------------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                         ....+...+.+.+++.|++++.+++|+++.. +++.+..+. .+|+++.+|.||.|+|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~-~~g~~i~A~~VI~A~G~  162 (428)
T PRK10157         87 TMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVE-ADGDVIEAKTVILADGV  162 (428)
T ss_pred             eeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEE-cCCcEEECCEEEEEeCC
Confidence                               0012234566777788999999999999886 456554555 45668999999999985

>PRK08244 hypothetical protein; Provisional

Probab=98.09  E-value=6.9e-05  Score=68.96  Aligned_cols=98  Identities=20%  Similarity=0.302  Sum_probs=72.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc----------------------------------c-------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L-------  246 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~----------------------------------~-------  246 (306)
                      -.|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                  .       
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            36899999999999999999999999999886542100                                  0       


Q ss_pred             --------------c-CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-CEEecCEEEEecCC
Q 021871          247 --------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTVILLPYD  305 (306)
Q Consensus       247 --------------~-~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~i~~d~vv~a~g~  305 (306)
                                    . ...+.+.+.+.+++.|++++.++++++++..+++..+.+...+| +++++|.||-|.|.
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~  157 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGA  157 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCC
Confidence                          0 01344556666777899999999999998755544333444456 47999999999985

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.09  E-value=2.7e-05  Score=75.82  Aligned_cols=88  Identities=25%  Similarity=0.225  Sum_probs=66.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc--------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+++|+|||+|+.|+..|..|++.+.+|+++.+.+.+....        .+.++.....+.+++.||+++.++.+ .+..
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~l  616 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLTV  616 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEEh
Confidence            46789999999999999999999999999999876543211        23344555556778889999999877 2332


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                 .+.....+|.||+|||.
T Consensus       617 -----------e~L~~~gYDaVILATGA  633 (1019)
T PRK09853        617 -----------EQLKNEGYDYVVVAIGA  633 (1019)
T ss_pred             -----------hhheeccCCEEEECcCC
Confidence                       12224558999999996

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.09  E-value=8.1e-05  Score=66.61  Aligned_cols=95  Identities=24%  Similarity=0.352  Sum_probs=72.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcccc------------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ------------------------------------------  244 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~~------------------------------------------  244 (306)
                      +|+|||+|+.|+-+|..|++.+  .+|+++++.+...+                                          
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   82 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR   82 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence            5899999999999999999985  78888887643100                                          


Q ss_pred             ----------c--------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEE
Q 021871          245 ----------R--------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI  300 (306)
Q Consensus       245 ----------~--------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv  300 (306)
                                .              .....+.+.+.+.+++.|++++.+++|++++.+ ++.+ .|++++|+++.+|.||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vI  160 (403)
T PRK07333         83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETR-DEGV-TVTLSDGSVLEARLLV  160 (403)
T ss_pred             CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEE
Confidence                      0              001234556777777889999999999999864 4444 5788888899999999


Q ss_pred             EecCC
Q 021871          301 LLPYD  305 (306)
Q Consensus       301 ~a~g~  305 (306)
                      .|.|.
T Consensus       161 ~AdG~  165 (403)
T PRK07333        161 AADGA  165 (403)
T ss_pred             EcCCC
Confidence            99985

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.08  E-value=5e-06  Score=72.95  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      +||+|||||++|+++|.+|++.|.   +|+|+|+++..+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~---~V~viEk~~~iG   37 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNK---RVLVVEKRNHIG   37 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC
Confidence            699999999999999999999987   999999976543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.07  E-value=1.7e-05  Score=77.68  Aligned_cols=90  Identities=18%  Similarity=0.082  Sum_probs=70.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+++|+|||+|+.|+..|..|++.|.+|+++.+.+.+..-        .++..+.+...+.+++.||++++++.+..   
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~---  381 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK---  381 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence            4789999999999999999999999999999998765431        12445666667788889999999875421   


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                             .+.+++.....+|.||+|||.
T Consensus       382 -------dit~~~l~~~~yDAV~LAtGA  402 (944)
T PRK12779        382 -------TATLEDLKAAGFWKIFVGTGA  402 (944)
T ss_pred             -------EEeHHHhccccCCEEEEeCCC
Confidence                   244555545679999999995

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.07  E-value=6e-05  Score=63.49  Aligned_cols=53  Identities=19%  Similarity=0.275  Sum_probs=39.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCC-CCcEEEeccCCCCCCCCCccccccccC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMA-DGRLCIVSKEAYAPYERPALTKGYLFP  103 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~-~~~V~vie~~~~~~~~~~~~~~~~~~~  103 (306)
                      +.||+|||||-.|.+.|+-|.++-.. ..+|+|+|+++...-....+.-|.+-.
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~Q  139 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQ  139 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceee
Confidence            67999999999999999999876432 259999999987654444444444433

>PRK07236 hypothetical protein; Provisional

Probab=98.07  E-value=4.9e-05  Score=67.68  Aligned_cols=97  Identities=19%  Similarity=0.259  Sum_probs=70.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-----ccCHHHHHH---------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQR---------------------------  254 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~---------------------------  254 (306)
                      ..+|+|||+|..|+.+|..|++.+.+|+++++.+.....     .+.+...+.                           
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~   85 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR   85 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence            568999999999999999999999999999988643211     012222111                           


Q ss_pred             ----------------HHHHHHH--cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          255 ----------------YEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       255 ----------------~~~~~~~--~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                      +.+.+.+  .+++++.+++|++++.+ ++.+ .|.+++|+++.+|.||.|-|.
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vIgADG~  152 (386)
T PRK07236         86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQD-GDRV-TARFADGRRETADLLVGADGG  152 (386)
T ss_pred             EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEec-CCeE-EEEECCCCEEEeCEEEECCCC
Confidence                            1122221  14679999999999874 4444 588899999999999999774

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.07  E-value=1.9e-05  Score=73.74  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=31.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+||+|||||.|||.||..+++.+ +..+|+|+||...
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g-~g~~V~lveK~~~   39 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEAN-PHLDVALISKVYP   39 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhC-CCCcEEEEEccCC
Confidence            479999999999999999999875 2339999999765

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.07  E-value=0.0001  Score=63.86  Aligned_cols=96  Identities=19%  Similarity=0.266  Sum_probs=67.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC---Cccc--------cc----ccCHHHHHHHHHHHHHcCCEEEcCc
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE---NHLL--------QR----LFTPSLAQRYEQLYQQNGVKFVKGA  270 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~---~~~~--------~~----~~~~~~~~~~~~~~~~~gv~i~~~~  270 (306)
                      ..++|+|||+|+.|+..|..+.+.+.++.++...   ..+.        +.    ...+.+.+.+.+.....++++..+ 
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   83 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence            3578999999999999999999999888877532   1110        11    112345666777777788888776 


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          271 SIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       271 ~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .|..|+. .++.+ .+..+++ .+.+|.||+|||.
T Consensus        84 ~v~~v~~-~~~~~-~v~~~~~-~~~~d~vilAtG~  115 (321)
T PRK10262         84 HINKVDL-QNRPF-RLTGDSG-EYTCDALIIATGA  115 (321)
T ss_pred             EEEEEEe-cCCeE-EEEecCC-EEEECEEEECCCC
Confidence            5777875 34443 3554444 7899999999996

>PLN02568 polyamine oxidase

Probab=98.07  E-value=5.7e-06  Score=76.35  Aligned_cols=42  Identities=21%  Similarity=0.177  Sum_probs=35.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCC--CCCcEEEeccCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGM--ADGRLCIVSKEAYAP   90 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~--~~~~V~vie~~~~~~   90 (306)
                      ++.+||+|||||++||++|++|++.|.  ...+|+|+|++...+
T Consensus         3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G   46 (539)
T PLN02568          3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG   46 (539)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence            456799999999999999999999871  123899999988764

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.06  E-value=1.6e-05  Score=72.44  Aligned_cols=89  Identities=19%  Similarity=0.212  Sum_probs=68.6

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+++|+|||+|+.|+..|..|++.+.+|+++.+.+.+...        ..+..+.....+.+++.|++++.++.+..   
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  215 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR---  215 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence            4678999999999999999999999999999988765321        13556677777888889999999987621   


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                             .+.+.++ .+.+|.||+|||.
T Consensus       216 -------~v~~~~~-~~~~d~vvlAtGa  235 (457)
T PRK11749        216 -------DITLDEL-RAGYDAVFIGTGA  235 (457)
T ss_pred             -------ccCHHHH-HhhCCEEEEccCC
Confidence                   1223333 3779999999995

>PLN02529 lysine-specific histone demethylase 1

Probab=98.05  E-value=7.3e-06  Score=77.65  Aligned_cols=56  Identities=20%  Similarity=0.291  Sum_probs=44.4

Q ss_pred             cCCccCccccccccceeeecccCCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           26 RIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      .+.|..+|...+.      .++....++|+|||||++||+||+.|+++|+   +|+|+|+++..+
T Consensus       141 ~inc~vnp~~~~~------~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G  196 (738)
T PLN02529        141 YINFGVSPSFASP------IPEEGTEGSVIIVGAGLAGLAAARQLLSFGF---KVVVLEGRNRPG  196 (738)
T ss_pred             CcceeecccccCC------CCcccCCCCEEEECcCHHHHHHHHHHHHcCC---cEEEEecCccCc
Confidence            4568888875441      1112456899999999999999999999999   999999987654

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.05  E-value=6.5e-05  Score=69.42  Aligned_cols=95  Identities=24%  Similarity=0.339  Sum_probs=70.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC-cccc-----------------------c-------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLLQ-----------------------R-------------------  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~-~~~~-----------------------~-------------------  245 (306)
                      .|+|||+|..|++.|..+++.|.+|.++.+.. .+..                       .                   
T Consensus         6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s   85 (618)
T PRK05192          6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS   85 (618)
T ss_pred             eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence            58999999999999999999999999998873 1100                       0                   


Q ss_pred             ----------ccCH-HHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          246 ----------LFTP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       246 ----------~~~~-~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                .++. .+...+.+.+.+. |++++. ..|..+.. +++.+.+|.+.+|..+.|+.||+|||.
T Consensus        86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence                      0000 1223344555544 888864 46888875 567788999999999999999999993

>PLN02985 squalene monooxygenase

Probab=98.02  E-value=6.9e-06  Score=75.52  Aligned_cols=37  Identities=19%  Similarity=0.442  Sum_probs=33.7

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ....+||+|||||++|+++|..|++.|+   +|+|+|+..
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~---~V~vlEr~~   76 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGR---RVHVIERDL   76 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCC---eEEEEECcC
Confidence            3456899999999999999999999998   999999975

>PRK06184 hypothetical protein; Provisional

Probab=98.01  E-value=0.00012  Score=67.56  Aligned_cols=96  Identities=15%  Similarity=0.191  Sum_probs=71.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------------------c-c
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R-L  246 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~----------------------------------------~-~  246 (306)
                      -.|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                                        . .
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   83 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV   83 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence            4699999999999999999999999999988654310                                        0 0


Q ss_pred             ----------------------c-CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCCEEecCEEE
Q 021871          247 ----------------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTVI  300 (306)
Q Consensus       247 ----------------------~-~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~~i~~d~vv  300 (306)
                                            . ...+.+.+.+.+.+.|++++.++++++++.++++..  +.+   .+++++.+|.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~--v~~~~~~~~~~i~a~~vV  161 (502)
T PRK06184         84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVT--ARVAGPAGEETVRARYLV  161 (502)
T ss_pred             EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEE--EEEEeCCCeEEEEeCEEE
Confidence                                  0 011234566777778999999999999987545432  444   555689999999


Q ss_pred             EecCC
Q 021871          301 LLPYD  305 (306)
Q Consensus       301 ~a~g~  305 (306)
                      -|.|.
T Consensus       162 gADG~  166 (502)
T PRK06184        162 GADGG  166 (502)
T ss_pred             ECCCC
Confidence            99985

>PRK07588 hypothetical protein; Provisional

Probab=98.01  E-value=0.00011  Score=65.51  Aligned_cols=94  Identities=23%  Similarity=0.192  Sum_probs=68.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-------------------------------------------  245 (306)
                      +|+|||+|..|+-+|..|++.+.+|+++++.+.+...                                           
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~   81 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK   81 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence            6899999999999999999999999999876543100                                           


Q ss_pred             -ccC-----------------HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          246 -LFT-----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       246 -~~~-----------------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                       .++                 ..+...+.+.+ ..+++++++++|++++.. ++.+ .|.+++|+++.+|.||-|-|.
T Consensus        82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~d~vIgADG~  156 (391)
T PRK07588         82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEH-RDGV-RVTFERGTPRDFDLVIGADGL  156 (391)
T ss_pred             EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEEC-CCeE-EEEECCCCEEEeCEEEECCCC
Confidence             000                 01222222323 347999999999999874 4444 488899999999999999885

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.00  E-value=7.8e-06  Score=72.15  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=32.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.||+|||||++|+.+|+.|+++|+   +|+|+|+.+.
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl---~V~LiE~rp~   36 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGV---PVELYEMRPV   36 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCc
Confidence            4699999999999999999999998   9999997654

>PRK10015 oxidoreductase; Provisional

Probab=97.99  E-value=0.00015  Score=65.44  Aligned_cols=95  Identities=22%  Similarity=0.289  Sum_probs=71.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc------------------ccc------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QRL------------------------  246 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~------------------~~~------------------------  246 (306)
                      .|+|||+|+.|.-.|..|++.+.+|.++++.+.+.                  +..                        
T Consensus         7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~   86 (429)
T PRK10015          7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESAV   86 (429)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCce
Confidence            68999999999999999999998888888764321                  000                        


Q ss_pred             -------------------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          247 -------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       247 -------------------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                         ....+...+.+.+++.|++++.+++|+.+.. +++.+.++... +..+.+|.||.|.|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~~-~~~i~A~~VI~AdG~  162 (429)
T PRK10015         87 TLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQAG-DDILEANVVILADGV  162 (429)
T ss_pred             EeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEeC-CeEEECCEEEEccCc
Confidence                               0012333566777888999999999999886 45566556654 458999999999985

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.99  E-value=0.00015  Score=64.35  Aligned_cols=95  Identities=21%  Similarity=0.289  Sum_probs=71.8

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCccccc------------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR------------------------------------------  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~~~~------------------------------------------  245 (306)
                      .|+|||+|+.|.-+|..|++.| .+|+++++.+...+.                                          
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            3789999999999999999999 999999876432000                                          


Q ss_pred             ---------------------ccCHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEec
Q 021871          246 ---------------------LFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP  303 (306)
Q Consensus       246 ---------------------~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~  303 (306)
                                           .....+.+.+.+.+.+ .|++++.+++|++++.++++ + .|.+++|+++.+|.||.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~Ad  158 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAAD  158 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEec
Confidence                                 0002234455566666 49999999999999864444 4 5778888889999999999


Q ss_pred             CC
Q 021871          304 YD  305 (306)
Q Consensus       304 g~  305 (306)
                      |.
T Consensus       159 G~  160 (382)
T TIGR01984       159 GA  160 (382)
T ss_pred             CC
Confidence            85

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.98  E-value=1.2e-05  Score=69.51  Aligned_cols=53  Identities=21%  Similarity=0.389  Sum_probs=40.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-CCCC-ccccccccC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERP-ALTKGYLFP  103 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~-~~~~~~~~~  103 (306)
                      ..++|+|||||++||++|++|++++ ++..|+++|..+..+ |-+. ...++++|.
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~-p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE   64 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLG-PDVTITLFEASPRVGGWIRSDRMQNGFIFE   64 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcC-CCceEEEEecCCcccceeeeccCCCceeec
Confidence            3579999999999999999999997 567788999988764 3333 334445543

>PLN02697 lycopene epsilon cyclase

Probab=97.97  E-value=0.00014  Score=66.95  Aligned_cols=96  Identities=21%  Similarity=0.306  Sum_probs=70.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------------  245 (306)
                      -.|+|||+|+.|+.+|..+++.+.+|.++.+...+...                                          
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            35899999999999999999999999998764222100                                          


Q ss_pred             ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          246 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       246 ~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .....+.+.+.+.+.+.|+++ .+++|+.++..++ .+..+.+.+|.++.+|.||.|+|.
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~-~~~vv~~~dG~~i~A~lVI~AdG~  246 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD-GLRLVACEDGRVIPCRLATVASGA  246 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC-cEEEEEEcCCcEEECCEEEECCCc
Confidence            001133455666777789998 5679999986434 333355677889999999999985

>PTZ00367 squalene epoxidase; Provisional

Probab=97.97  E-value=9.3e-06  Score=75.25  Aligned_cols=35  Identities=20%  Similarity=0.444  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ..+||+|||||++|+++|..|++.|+   +|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~---~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGR---KVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCC---EEEEEcccc
Confidence            46899999999999999999999998   999999975

>PRK07190 hypothetical protein; Provisional

Probab=97.97  E-value=0.00017  Score=66.11  Aligned_cols=96  Identities=21%  Similarity=0.317  Sum_probs=71.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------------------cc-
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------RL-  246 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~----------------------------------------~~-  246 (306)
                      ..|+|||+|++|+-+|..|++.|.+|.++++.+....                                        .. 
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            4699999999999999999999988888887654210                                        00 


Q ss_pred             ---------cC------------HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          247 ---------FT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       247 ---------~~------------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                               ..            ..+...+.+.+++.|++++.+++|++++.++++.  .+.+.+|+++.++.||.|.|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~  163 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGS  163 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCC
Confidence                     00            0122345566777899999999999998754543  356677889999999999985

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.96  E-value=1.2e-05  Score=70.63  Aligned_cols=39  Identities=28%  Similarity=0.377  Sum_probs=34.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ...+|||||||+|||+||.+|.+.|..  +++|+|..+.++
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~--~~~IlEa~dRIG   58 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFI--DVLILEASDRIG   58 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCc--eEEEEEeccccC
Confidence            346899999999999999999998876  999999988864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.96  E-value=0.00015  Score=67.62  Aligned_cols=93  Identities=26%  Similarity=0.352  Sum_probs=70.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc------------c---ccCHHHHHHHHHHHHHcCCEEEcCceE
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------R---LFTPSLAQRYEQLYQQNGVKFVKGASI  272 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~------------~---~~~~~~~~~~~~~~~~~gv~i~~~~~v  272 (306)
                      -.|+|||+|+.|+..|..+++.+.+|+++.+.. +..            .   .....+.+.+.+.+++.|++++ +++|
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V   82 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV   82 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence            468999999999999999999999999998753 211            0   0123566777778888899986 6688


Q ss_pred             EEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          273 KNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       273 ~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ..++.. +. ...|.+.+| .+.+|.+|+|||.
T Consensus        83 ~~i~~~-~~-~~~V~~~~g-~~~a~~lVlATGa  112 (555)
T TIGR03143        83 LDVDFD-GD-IKTIKTARG-DYKTLAVLIATGA  112 (555)
T ss_pred             EEEEec-CC-EEEEEecCC-EEEEeEEEECCCC
Confidence            888853 32 225777666 7899999999995

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK05868 hypothetical protein; Validated

Probab=97.96  E-value=0.00017  Score=63.92  Aligned_cols=96  Identities=24%  Similarity=0.172  Sum_probs=69.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------------  245 (306)
                      ++|+|+|+|..|+-+|..|++.+.+|+++++.+.+...                                          
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            47999999999999999999999999999877543200                                          


Q ss_pred             --ccCH------H--------HHHHHHHHHH---HcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          246 --LFTP------S--------LAQRYEQLYQ---QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       246 --~~~~------~--------~~~~~~~~~~---~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                        ....      .        ....+.+.+.   ..|++++++++|++++. +++.+ .|++++|+++++|.||-|-|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~-~~~~v-~v~~~dg~~~~adlvIgADG~  158 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQD-DGDSV-RVTFERAAAREFDLVIGADGL  158 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEe-cCCeE-EEEECCCCeEEeCEEEECCCC
Confidence              0000      0        0112333332   35899999999999986 34444 588899999999999999875

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.96  E-value=0.00014  Score=65.11  Aligned_cols=95  Identities=17%  Similarity=0.296  Sum_probs=72.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc----------cc--------------------ccc------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------LL--------------------QRL------------  246 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~----------~~--------------------~~~------------  246 (306)
                      .|+|||+|..|.-+|..|++.|.+|+++++.+.          ..                    +..            
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~   83 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEMQ   83 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeEE
Confidence            689999999999999999999999999987651          00                    000            


Q ss_pred             -----------c---------------CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEE
Q 021871          247 -----------F---------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI  300 (306)
Q Consensus       247 -----------~---------------~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv  300 (306)
                                 +               ...+.+.+.+.+++.|++++.++++++++.++++ + .|.+.+|+++.+|.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vV  161 (405)
T PRK05714         84 VWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLVV  161 (405)
T ss_pred             EEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEE
Confidence                       0               0123345556677779999999999999875444 4 4778888899999999


Q ss_pred             EecCC
Q 021871          301 LLPYD  305 (306)
Q Consensus       301 ~a~g~  305 (306)
                      .|.|.
T Consensus       162 gAdG~  166 (405)
T PRK05714        162 AADGA  166 (405)
T ss_pred             EecCC
Confidence            99985

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.95  E-value=0.00021  Score=63.63  Aligned_cols=95  Identities=23%  Similarity=0.292  Sum_probs=72.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc---------------------c---------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------R---------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~---------------------~---------------------  245 (306)
                      -+|+|||+|+.|+-+|..|++.+.+|+++++.+....                     .                     
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   85 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF   85 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence            4699999999999999999999999999987754311                     0                     


Q ss_pred             ----------------------ccCHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEe
Q 021871          246 ----------------------LFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILL  302 (306)
Q Consensus       246 ----------------------~~~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a  302 (306)
                                            .....+.+.+.+.+++.| ++++ ++++++++.. ++.+ .|.+.+|.++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~vI~a  162 (388)
T PRK07608         86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVD-PDAA-TLTLADGQVLRADLVVGA  162 (388)
T ss_pred             ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEec-CCeE-EEEECCCCEEEeeEEEEe
Confidence                                  001223445666677776 9999 8899999864 4444 588888888999999999


Q ss_pred             cCC
Q 021871          303 PYD  305 (306)
Q Consensus       303 ~g~  305 (306)
                      .|.
T Consensus       163 dG~  165 (388)
T PRK07608        163 DGA  165 (388)
T ss_pred             CCC
Confidence            985

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.95  E-value=2.8e-05  Score=70.57  Aligned_cols=89  Identities=18%  Similarity=0.142  Sum_probs=67.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc-------c-ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+++|+|||+|+.|+..|..|++.+.+|+++.+.+.+..       . ..+.++.+...+.+++.||+++.++.+.    
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~----  207 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG----  207 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC----
Confidence            357899999999999999999999999999998765421       1 1345666667777888999999997541    


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                       .     .+.+.++ ...+|.||+|||.
T Consensus       208 -~-----~v~~~~~-~~~yd~viiAtGa  228 (449)
T TIGR01316       208 -K-----TATLEEL-FSQYDAVFIGTGA  228 (449)
T ss_pred             -C-----cCCHHHH-HhhCCEEEEeCCC
Confidence             0     1333333 3569999999995

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.95  E-value=0.00016  Score=64.46  Aligned_cols=95  Identities=22%  Similarity=0.215  Sum_probs=70.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc-------------------------c------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------R------------------  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~-------------------------~------------------  245 (306)
                      .|+|||+|+.|.-+|..+++.+.+|.++++.+.+..                         .                  
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            378999999999999999999999999987653210                         0                  


Q ss_pred             -ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          246 -LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       246 -~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                       .....+.+.+.+.+.+.|++++ ..+|..+...+++.+ .|++.+|+++.+|.||.|+|.
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~-~v~~~~g~~~~a~~VI~A~G~  139 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALS-TVYCAGGQRIQARLVIDARGF  139 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCcee-EEEeCCCCEEEeCEEEECCCC
Confidence             0012344556666777799887 457888886434443 588888889999999999995

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.95  E-value=0.00022  Score=63.37  Aligned_cols=95  Identities=22%  Similarity=0.266  Sum_probs=72.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-------------------------------c-------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------Q-------------  244 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-------------------------------~-------------  244 (306)
                      .|+|||+|..|.-+|..|++.+.+|+++++.+...                               .             
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            37999999999999999999999999998885310                               0             


Q ss_pred             -c--------------------ccCHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEe
Q 021871          245 -R--------------------LFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILL  302 (306)
Q Consensus       245 -~--------------------~~~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a  302 (306)
                       .                    .....+.+.+.+.+.+.| ++++.+++|++++.. ++.+ .+++++|+++.+|.||.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~~~~vi~a  158 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDDGQQLRARLLVGA  158 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCee-EEEECCCCEEEeeEEEEe
Confidence             0                    001123445556666666 999999999999864 4444 588889989999999999


Q ss_pred             cCC
Q 021871          303 PYD  305 (306)
Q Consensus       303 ~g~  305 (306)
                      .|.
T Consensus       159 dG~  161 (385)
T TIGR01988       159 DGA  161 (385)
T ss_pred             CCC
Confidence            885

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.95  E-value=1e-05  Score=75.71  Aligned_cols=36  Identities=17%  Similarity=0.309  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .++.+|+|||||++||++|..|++.|+   +|+|+|+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi---~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGF---DVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCC---eEEEEeccc
Confidence            345799999999999999999999999   999999975

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.95  E-value=0.00018  Score=55.39  Aligned_cols=42  Identities=31%  Similarity=0.452  Sum_probs=32.9

Q ss_pred             CCEEE-cCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          263 GVKFV-KGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       263 gv~i~-~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      |+++. ...+|+.|+..+++.  .|.+.+|..+.+|.||+|||.+
T Consensus       114 ~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh~  156 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGHQ  156 (156)
T ss_pred             CcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCCC
Confidence            54443 255899999865554  5888999999999999999975

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.00019  Score=61.27  Aligned_cols=94  Identities=22%  Similarity=0.348  Sum_probs=71.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecC-Cc--------------ccccccCHHHHHHHHHHHHHcCCEEEcCce
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPE-NH--------------LLQRLFTPSLAQRYEQLYQQNGVKFVKGAS  271 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~-v~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  271 (306)
                      ..|+|||+|+.|+-.|-++.+.+.+ +.++... +.              +......+.+.+.+.+..+..++++.. ..
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence            4689999999999999999999877 4444442 11              111124567888888888888999998 57


Q ss_pred             EEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          272 IKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       272 v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      |.+++..++ . ..|++++|. ++++.||+|||.
T Consensus        83 v~~v~~~~~-~-F~v~t~~~~-~~ak~vIiAtG~  113 (305)
T COG0492          83 VEKVELEGG-P-FKVKTDKGT-YEAKAVIIATGA  113 (305)
T ss_pred             EEEEeecCc-e-EEEEECCCe-EEEeEEEECcCC
Confidence            888886333 3 369999985 999999999995

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.93  E-value=0.00017  Score=66.61  Aligned_cols=96  Identities=20%  Similarity=0.330  Sum_probs=69.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc------------------ccc------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QRL------------------------  246 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~------------------~~~------------------------  246 (306)
                      .|+|||+|..|++.|..++..+.+|.++.+.....                  .+.                        
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s   81 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS   81 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence            47899999999999999999999999988753110                  000                        


Q ss_pred             -----------cC-HHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          247 -----------FT-PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       247 -----------~~-~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                 ++ ..+...+.+.+++. |++++.+ .++.+...+++.+.+|.+.+|..+.||.||+|||.
T Consensus        82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGt  152 (617)
T TIGR00136        82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGT  152 (617)
T ss_pred             CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCc
Confidence                       00 01223455556655 7888766 67777543467778999999999999999999984

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.93  E-value=0.00025  Score=56.24  Aligned_cols=99  Identities=22%  Similarity=0.228  Sum_probs=74.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc-------------------------------------cCH
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FTP  249 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~-------------------------------------~~~  249 (306)
                      .-.|+|+|+|++|+-.|..|++.+.+|.++.+.-.+....                                     .+.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~  109 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA  109 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence            4569999999999999999999999999999876543211                                     123


Q ss_pred             HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-----------CEEecCEEEEecCC
Q 021871          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----------STIDADTVILLPYD  305 (306)
Q Consensus       250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-----------~~i~~d~vv~a~g~  305 (306)
                      .+...+..+.-+.|++|+..+.|+.+-..++.+|.+|.+.=.           -.++++.||-|||.
T Consensus       110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH  176 (262)
T COG1635         110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH  176 (262)
T ss_pred             HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence            345556666667789999999999876534436767766432           26899999999996

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.90  E-value=0.00023  Score=63.94  Aligned_cols=96  Identities=22%  Similarity=0.284  Sum_probs=67.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc----cc--------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----QR--------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~----~~--------------------------------------  245 (306)
                      .+|+|||+|..|.-+|..|++.|.+|+++++.+...    ++                                      
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   98 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDADY   98 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCCC
Confidence            469999999999999999999999999998765421    00                                      


Q ss_pred             -----c--------------cCHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCC--C-CEEecCEEEEe
Q 021871          246 -----L--------------FTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED--G-STIDADTVILL  302 (306)
Q Consensus       246 -----~--------------~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~--G-~~i~~d~vv~a  302 (306)
                           .              ....+.+.+.+.+.+. |++++.++++++++.++++.  .|++.+  + .++++|.||-|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~--~v~~~~~~~~~~i~adlvIgA  176 (415)
T PRK07364         99 PGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAA--TVTLEIEGKQQTLQSKLVVAA  176 (415)
T ss_pred             CceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCee--EEEEccCCcceEEeeeEEEEe
Confidence                 0              0012233444445443 79999999999998644443  355543  2 36999999999


Q ss_pred             cCC
Q 021871          303 PYD  305 (306)
Q Consensus       303 ~g~  305 (306)
                      .|.
T Consensus       177 DG~  179 (415)
T PRK07364        177 DGA  179 (415)
T ss_pred             CCC
Confidence            985

>PRK09126 hypothetical protein; Provisional

Probab=97.89  E-value=0.0003  Score=62.69  Aligned_cols=96  Identities=23%  Similarity=0.355  Sum_probs=70.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc-------ccc-----------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------LQR-----------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~-------~~~-----------------------------------  245 (306)
                      -+|+|||+|+.|+-+|..|++.|.+|+++++.+..       ..+                                   
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   83 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL   83 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence            46899999999999999999999999999887531       000                                   


Q ss_pred             --------ccC---------------HHHHHHHHHHH-HHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEE
Q 021871          246 --------LFT---------------PSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL  301 (306)
Q Consensus       246 --------~~~---------------~~~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~  301 (306)
                              .++               ..+.+.+.+.+ +..|++++.+++|++++.+ ++.+ .|.+++|+++.+|.||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~~~-~v~~~~g~~~~a~~vI~  161 (392)
T PRK09126         84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DDGA-QVTLANGRRLTARLLVA  161 (392)
T ss_pred             cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CCeE-EEEEcCCCEEEeCEEEE
Confidence                    000               01222233333 3468999999999999864 4444 57888898999999999


Q ss_pred             ecCC
Q 021871          302 LPYD  305 (306)
Q Consensus       302 a~g~  305 (306)
                      |.|.
T Consensus       162 AdG~  165 (392)
T PRK09126        162 ADSR  165 (392)
T ss_pred             eCCC
Confidence            9985

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.89  E-value=0.00025  Score=65.99  Aligned_cols=99  Identities=20%  Similarity=0.275  Sum_probs=69.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------  244 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~------------------------------------------  244 (306)
                      ..+|+|||+|++|+-+|..|++.+.+|+++++.+....                                          
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~   89 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR   89 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence            45799999999999999999999999998888753210                                          


Q ss_pred             ---cc---------cC-------HHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEe
Q 021871          245 ---RL---------FT-------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILL  302 (306)
Q Consensus       245 ---~~---------~~-------~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a  302 (306)
                         ..         .+       +.+.+.+.+.+.+ .|++++.+++|++++.++++..+.++..+|  +++.+|.||-|
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgA  169 (538)
T PRK06183         90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGC  169 (538)
T ss_pred             EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEec
Confidence               00         00       1122334455555 399999999999999755554323332256  37999999999


Q ss_pred             cCC
Q 021871          303 PYD  305 (306)
Q Consensus       303 ~g~  305 (306)
                      .|.
T Consensus       170 DG~  172 (538)
T PRK06183        170 DGA  172 (538)
T ss_pred             CCC
Confidence            885

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.88  E-value=5.3e-06  Score=71.67  Aligned_cols=101  Identities=19%  Similarity=0.213  Sum_probs=73.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCC-----------CCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMA-----------DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG  119 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~-----------~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (306)
                      .-++|||||||.|...|-+|+..-.+           ..+|+++|..+...                         .+++
T Consensus       218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-------------------------~mFd  272 (491)
T KOG2495|consen  218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-------------------------NMFD  272 (491)
T ss_pred             eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-------------------------HHHH
Confidence            35899999999999999999875321           44678888765420                         0111


Q ss_pred             CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCcc
Q 021871          120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASR  176 (306)
Q Consensus       120 ~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~  176 (306)
                      ..+..+..+.+.+.++++..++.|..++...-.+.+.+|+  .+.|..|+-+||..++.
T Consensus       273 krl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp  331 (491)
T KOG2495|consen  273 KRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP  331 (491)
T ss_pred             HHHHHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch
Confidence            1123456666778899999999998887765555565664  79999999999988763

>PRK09897 hypothetical protein; Provisional

Probab=97.87  E-value=0.00031  Score=64.63  Aligned_cols=96  Identities=14%  Similarity=0.166  Sum_probs=65.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCccccc----------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQR----------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~~~----------------------------------------  245 (306)
                      ++|+|||+|.+|+-++..|.+..  .+|+++.++..+..+                                        
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            47999999999999999998754  378888886443210                                        


Q ss_pred             --------------c-----cCHHHHHH---HHHHHHHcC--CEEEcCceEEEEEeCCCCcEEEEEeCC-CCEEecCEEE
Q 021871          246 --------------L-----FTPSLAQR---YEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTVI  300 (306)
Q Consensus       246 --------------~-----~~~~~~~~---~~~~~~~~g--v~i~~~~~v~~i~~~~~~~v~~v~~~~-G~~i~~d~vv  300 (306)
                                    .     +...+.+.   +.+.+.+.|  ++++.+++|++++..+ +.+ .|.+.+ |..+.+|.||
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~-~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGV-MLATNQDLPSETFDLAV  159 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEE-EEEECCCCeEEEcCEEE
Confidence                          0     00011122   233344555  7888899999998744 444 477655 4679999999


Q ss_pred             EecCC
Q 021871          301 LLPYD  305 (306)
Q Consensus       301 ~a~g~  305 (306)
                      +|+|.
T Consensus       160 LAtGh  164 (534)
T PRK09897        160 IATGH  164 (534)
T ss_pred             ECCCC
Confidence            99996

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.87  E-value=1.6e-05  Score=71.61  Aligned_cols=96  Identities=27%  Similarity=0.359  Sum_probs=27.8

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-------------------------------------------  245 (306)
                      .|+|||+|+.|+-.|..+++.|.+|.++++.+.+...                                           
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            3799999999999999999999999999998764310                                           


Q ss_pred             -----ccCH-HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC---CCEEecCEEEEecCC
Q 021871          246 -----LFTP-SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTVILLPYD  305 (306)
Q Consensus       246 -----~~~~-~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---G~~i~~d~vv~a~g~  305 (306)
                           .+++ .+...+.+.+++.|+++++++.|..+.. ++++|.+|.+.+   ..++.+|.+|-|||.
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence                 0111 1122355666778999999999999997 577888888875   357999999999984

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.86  E-value=4.6e-05  Score=68.52  Aligned_cols=88  Identities=23%  Similarity=0.257  Sum_probs=68.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc--------cCHHHHHHHHHHHHHcCCEEEcCceEE-EEE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIK-NLE  276 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gv~i~~~~~v~-~i~  276 (306)
                      .+++|+|||+|+.++..|..|++.+..|+++.+.+......        .+.++.+...+.|++.|++++.++.+- .+.
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it  201 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDIT  201 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCC
Confidence            46899999999999999999999999999999987765321        244677788889999999999998774 333


Q ss_pred             eCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          277 AGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       277 ~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .           ++ -.-++|+|++|+|.
T Consensus       202 ~-----------~~-L~~e~Dav~l~~G~  218 (457)
T COG0493         202 L-----------EE-LLKEYDAVFLATGA  218 (457)
T ss_pred             H-----------HH-HHHhhCEEEEeccc
Confidence            2           11 12335888888874

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.86  E-value=0.00031  Score=62.79  Aligned_cols=96  Identities=19%  Similarity=0.229  Sum_probs=75.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------c------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------L------------------------  246 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------~------------------------  246 (306)
                      .|+|||+|+.|.-.|..|++.|.+|.++.+++.+...                  .                        
T Consensus         5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~   84 (396)
T COG0644           5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV   84 (396)
T ss_pred             eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence            5899999999999999999999999999887553210                  0                        


Q ss_pred             --------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          247 --------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       247 --------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                              ....+.+++.++.++.|++++.++.+..+..++++.+.++. .++.++.++.||.|.|.
T Consensus        85 ~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~a~~vI~AdG~  150 (396)
T COG0644          85 PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR-AGDDEVRAKVVIDADGV  150 (396)
T ss_pred             CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE-cCCEEEEcCEEEECCCc
Confidence                    01234566788889999999999999999986666664444 43468999999999985

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.86  E-value=4.7e-05  Score=69.78  Aligned_cols=77  Identities=17%  Similarity=0.157  Sum_probs=57.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++|+|||+|.+|+++|..|+++|+   +|+++|+.+...                                ...+...+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~---~V~~~d~~~~~~--------------------------------~~~~~~~l   60 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGA---RVTVVDDGDDER--------------------------------HRALAAIL   60 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCchhh--------------------------------hHHHHHHH
Confidence            4689999999999999999999998   899999764210                                02234557


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.|+.++.+..+.              ....+|.+|+++|..+..
T Consensus        61 ~~~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~   92 (480)
T PRK01438         61 EALGATVRLGPGPT--------------LPEDTDLVVTSPGWRPDA   92 (480)
T ss_pred             HHcCCEEEECCCcc--------------ccCCCCEEEECCCcCCCC
Confidence            77899888765442              024689999999987763

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.86  E-value=0.00025  Score=62.03  Aligned_cols=97  Identities=28%  Similarity=0.350  Sum_probs=70.8

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-----------------------------------------c---
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----------------------------------------Q---  244 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-----------------------------------------~---  244 (306)
                      .|+|||+|..|+-+|..|++.|.+|+++.+.+...                                         .   
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            58999999999999999999999999998876532                                         0   


Q ss_pred             -----------c-------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-CCC--EEecC
Q 021871          245 -----------R-------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD  297 (306)
Q Consensus       245 -----------~-------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-~G~--~i~~d  297 (306)
                                 .             .....+.+.+.+.+++.|+++..++++++++.++++....+... +|+  ++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad  162 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD  162 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence                       0             00134667788888889999999999999987555543334333 342  68999


Q ss_pred             EEEEecCC
Q 021871          298 TVILLPYD  305 (306)
Q Consensus       298 ~vv~a~g~  305 (306)
                      .||-|-|.
T Consensus       163 lvVgADG~  170 (356)
T PF01494_consen  163 LVVGADGA  170 (356)
T ss_dssp             EEEE-SGT
T ss_pred             eeecccCc
Confidence            99999885

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.85  E-value=2.1e-05  Score=67.97  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=32.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      +.+|+|||||++||++|..|.++|+   +|.|+|+....
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~---~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGI---DVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCC---eEEEEeecccc
Confidence            4689999999999999999999999   99999996553

>PRK06753 hypothetical protein; Provisional

Probab=97.85  E-value=0.00023  Score=63.03  Aligned_cols=95  Identities=15%  Similarity=0.184  Sum_probs=68.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc----cCHH----------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----FTPS----------------------------------  250 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~----~~~~----------------------------------  250 (306)
                      +|+|||+|..|+-+|..|++.+.+++++++.+.+....    +.+.                                  
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            68999999999999999999999999999876531000    0000                                  


Q ss_pred             --------------HHHHHHHHHHHc--CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          251 --------------LAQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       251 --------------~~~~~~~~~~~~--gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                    -...+.+.|.+.  +.+++++++|++++. +++.+ .|++++|+++.+|.||-|-|.
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~-~~~~v-~v~~~~g~~~~~~~vigadG~  150 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIEN-ETDKV-TIHFADGESEAFDLCIGADGI  150 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEe-cCCcE-EEEECCCCEEecCEEEECCCc
Confidence                          011233333322  567999999999986 44544 588889989999999999884

>PRK12831 putative oxidoreductase; Provisional

Probab=97.85  E-value=5.6e-05  Score=68.81  Aligned_cols=90  Identities=20%  Similarity=0.236  Sum_probs=65.6

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc-------cc-cCH-HHHHHHHHHHHHcCCEEEcCceEEEEE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------RL-FTP-SLAQRYEQLYQQNGVKFVKGASIKNLE  276 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~-------~~-~~~-~~~~~~~~~~~~~gv~i~~~~~v~~i~  276 (306)
                      .+++|+|||+|+.|+..|..|++.+.+|+++.+.+.+..       .. ++. .+.....+.+++.|+++++++.+..  
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~--  216 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK--  216 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence            467899999999999999999999999999988654321       10 122 2555566778889999999986521  


Q ss_pred             eCCCCcEEEEEeCCC-CEEecCEEEEecCC
Q 021871          277 AGSDGRVAAVKLEDG-STIDADTVILLPYD  305 (306)
Q Consensus       277 ~~~~~~v~~v~~~~G-~~i~~d~vv~a~g~  305 (306)
                              .+...+. +.+.+|.||+|||.
T Consensus       217 --------~v~~~~~~~~~~~d~viiAtGa  238 (464)
T PRK12831        217 --------TVTIDELLEEEGFDAVFIGSGA  238 (464)
T ss_pred             --------cCCHHHHHhccCCCEEEEeCCC
Confidence                    1222222 24569999999995

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.85  E-value=0.00016  Score=60.55  Aligned_cols=42  Identities=26%  Similarity=0.403  Sum_probs=34.9

Q ss_pred             CCEEEcCceEEEEEeCCCCcEEEEEeCC--CC--EEecCEEEEecCC
Q 021871          263 GVKFVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTVILLPYD  305 (306)
Q Consensus       263 gv~i~~~~~v~~i~~~~~~~v~~v~~~~--G~--~i~~d~vv~a~g~  305 (306)
                      -++|.++++|+.|.+ .+|+|.+|+.-+  |+  .+.+|.||+|||-
T Consensus       159 ~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGG  204 (477)
T KOG2404|consen  159 LVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGG  204 (477)
T ss_pred             HHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCC
Confidence            488999999999996 789988888754  43  5889999999984

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.84  E-value=6.5e-05  Score=68.47  Aligned_cols=89  Identities=18%  Similarity=0.249  Sum_probs=66.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+++|+|||+|+.|+..|..++..+.+|+++.+.+.+...        ..+..+.+...+.+++.|++++.++.|..-  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence            4678999999999999999999999999999988764311        134556666677888999999999877321  


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                              +...+ ....+|.||+|||.
T Consensus       218 --------~~~~~-~~~~~D~vilAtGa  236 (467)
T TIGR01318       218 --------ISLDD-LLEDYDAVFLGVGT  236 (467)
T ss_pred             --------cCHHH-HHhcCCEEEEEeCC
Confidence                    11111 12469999999996

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.84  E-value=0.0004  Score=61.93  Aligned_cols=96  Identities=21%  Similarity=0.248  Sum_probs=71.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-------------------------------------c--c---
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------Q--R---  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-------------------------------------~--~---  245 (306)
                      -.|+|||+|..|.-+|..|++.+.+|+++++.+...                                     +  .   
T Consensus         6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (391)
T PRK08020          6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET   85 (391)
T ss_pred             ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence            468999999999999999999999999988764100                                     0  0   


Q ss_pred             -----------------------ccCHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEE
Q 021871          246 -----------------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL  301 (306)
Q Consensus       246 -----------------------~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~  301 (306)
                                             .....+.+.+.+.+++. |++++.+++|++++..+ +.+ .|.+++|+++.+|.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~  163 (391)
T PRK08020         86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDD-DGW-ELTLADGEEIQAKLVIG  163 (391)
T ss_pred             EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC-CeE-EEEECCCCEEEeCEEEE
Confidence                                   00112334455555655 99999999999998643 333 57788888999999999


Q ss_pred             ecCC
Q 021871          302 LPYD  305 (306)
Q Consensus       302 a~g~  305 (306)
                      |.|.
T Consensus       164 AdG~  167 (391)
T PRK08020        164 ADGA  167 (391)
T ss_pred             eCCC
Confidence            9985

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.84  E-value=0.00027  Score=63.42  Aligned_cols=98  Identities=13%  Similarity=0.160  Sum_probs=74.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------------------cc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------RL  246 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~----------------------------------------~~  246 (306)
                      .++++|||+|++|+..|..|.+.+.+++++.|.+.+.+                                        ..
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~   85 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY   85 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence            67899999999999999999999999999988866531                                        00


Q ss_pred             -cC-HHHHHHHHHHHHHcCC--EEEcCceEEEEEeCCCCcEEEEEeCCC----CEEecCEEEEecCC
Q 021871          247 -FT-PSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTVILLPYD  305 (306)
Q Consensus       247 -~~-~~~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~~~~v~~v~~~~G----~~i~~d~vv~a~g~  305 (306)
                       .+ .++.+.|...+++-++  .|..+++|..++...+|++ .|.+.++    +...+|.|++|||.
T Consensus        86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~~ifd~VvVctGh  151 (448)
T KOG1399|consen   86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEEEIFDAVVVCTGH  151 (448)
T ss_pred             CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCce-eEEEecCCcceeEEEeeEEEEcccC
Confidence             11 2566777777777765  6788888888886433788 4655444    35679999999995

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.83  E-value=8.1e-05  Score=67.64  Aligned_cols=89  Identities=18%  Similarity=0.149  Sum_probs=64.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHh--CCCcEEEEecCCcccccc---------cCHHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~--~~~~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      .+++|+|||+|+.|+..|..|+.  .+.+|+++.+.+.+..-.         ....+...+.+.++..+|+++.+..|. 
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg-  103 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG-  103 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC-
Confidence            46789999999999999999986  688999999998764211         112344556677788899999886552 


Q ss_pred             EEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          275 LEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                          .     .+.+++- ...+|.||+|||.
T Consensus       104 ----~-----dvtl~~L-~~~yDaVIlAtGa  124 (491)
T PLN02852        104 ----R-----DVSLSEL-RDLYHVVVLAYGA  124 (491)
T ss_pred             ----c-----cccHHHH-hhhCCEEEEecCC
Confidence                1     1333332 3469999999995

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.82  E-value=2.9e-05  Score=64.86  Aligned_cols=37  Identities=27%  Similarity=0.356  Sum_probs=34.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ++|++|||+|.+|+.+|..|+++|+   +|.|+|+++.++
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk---~VLIvekR~HIG   37 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGK---RVLIVEKRNHIG   37 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCC---EEEEEeccccCC
Confidence            4799999999999999999999998   999999998875

>PRK08013 oxidoreductase; Provisional

Probab=97.81  E-value=0.00042  Score=62.04  Aligned_cols=96  Identities=23%  Similarity=0.299  Sum_probs=71.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------c--------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------R--------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~----------------------------~--------------  245 (306)
                      ..|+|||+|+.|.-+|..|++.|.+|+++++.+....                            .              
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~   83 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV   83 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence            4689999999999999999999999999987643100                            0              


Q ss_pred             ---------cc---------------CHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEE
Q 021871          246 ---------LF---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI  300 (306)
Q Consensus       246 ---------~~---------------~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv  300 (306)
                               .+               ...+.+.+.+.+.+. |++++.+++|++++.++++ + .|++.+|+++.+|.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~i~a~lvV  161 (400)
T PRK08013         84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE-A-FLTLKDGSMLTARLVV  161 (400)
T ss_pred             EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-E-EEEEcCCCEEEeeEEE
Confidence                     00               012233445555554 8999999999999865444 3 5778889999999999


Q ss_pred             EecCC
Q 021871          301 LLPYD  305 (306)
Q Consensus       301 ~a~g~  305 (306)
                      -|-|.
T Consensus       162 gADG~  166 (400)
T PRK08013        162 GADGA  166 (400)
T ss_pred             EeCCC
Confidence            99885

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.81  E-value=2.4e-05  Score=73.32  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+.||+|||+|.|||+||..+++.|.   +|+|+||...
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lieK~~~   37 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGV---HVDLFSLVPV   37 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCC---cEEEEEccCC
Confidence            45799999999999999999999998   9999998764

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.81  E-value=3.1e-05  Score=68.49  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=30.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ||+|||+|.|||++|..|.+. +   +|+|+.|.+..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~---~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-F---RVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-C---cEEEEeCCCCC
Confidence            899999999999999999887 5   89999998763

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.81  E-value=3.1e-05  Score=73.97  Aligned_cols=39  Identities=28%  Similarity=0.407  Sum_probs=35.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ....+|+|||||++||++|+.|.+.|+   +|+|+|+++..+
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~---~v~v~E~~~r~G  274 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGF---KVVVLEGRARPG  274 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeccccCC
Confidence            446799999999999999999999998   999999987653

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.80  E-value=4.1e-05  Score=65.41  Aligned_cols=97  Identities=14%  Similarity=0.191  Sum_probs=74.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +++.+|||||..||..+--..++|-   +||++|--+...-        .+                 +.+....+...+
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGs---eVT~VEf~~~i~~--------~m-----------------D~Eisk~~qr~L  262 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGS---EVTVVEFLDQIGG--------VM-----------------DGEISKAFQRVL  262 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCC---eEEEEEehhhhcc--------cc-----------------CHHHHHHHHHHH
Confidence            5799999999999999999999997   9999996544310        00                 011135677788


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC---EEEcCC---C--cEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ---TLITNS---G--KLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~---~v~~~~---g--~~~~~~~lila~G~~~~  175 (306)
                      .+.+++|.++++|..+..+..   .+.+.+   +  ..+++|.+++++|-.|.
T Consensus       263 ~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~  315 (506)
T KOG1335|consen  263 QKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF  315 (506)
T ss_pred             HhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence            889999999999999987654   333332   2  37999999999998765

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.80  E-value=0.00045  Score=64.45  Aligned_cols=99  Identities=22%  Similarity=0.260  Sum_probs=70.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc----------------------------------c------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L------  246 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~----------------------------------~------  246 (306)
                      ...|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                  .      
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  102 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE  102 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence            357999999999999999999999999988877532100                                  0      


Q ss_pred             -------------------c-CHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCC-EEecCEEEEecC
Q 021871          247 -------------------F-TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTVILLPY  304 (306)
Q Consensus       247 -------------------~-~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~-~i~~d~vv~a~g  304 (306)
                                         . ...+...+.+.+++. +++++.+++|++++.++++....++..+|+ ++.+|.||.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG  182 (547)
T PRK08132        103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG  182 (547)
T ss_pred             EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence                               0 011223345555554 799999999999997555543344445564 699999999998


Q ss_pred             C
Q 021871          305 D  305 (306)
Q Consensus       305 ~  305 (306)
                      .
T Consensus       183 ~  183 (547)
T PRK08132        183 A  183 (547)
T ss_pred             C
Confidence            5

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.79  E-value=8.2e-05  Score=71.92  Aligned_cols=90  Identities=17%  Similarity=0.208  Sum_probs=66.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+++|+|||+|+.|+..|..|++.+.+|+++.+.+.+...        .++..+.+...+.+++.||+++.++.+..   
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~---  506 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK---  506 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence            3678999999999999999999999999999986543211        12445666666778889999999976511   


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                             .+++++.....+|.||+|||.
T Consensus       507 -------~v~~~~l~~~~ydavvlAtGa  527 (752)
T PRK12778        507 -------TITIEELEEEGFKGIFIASGA  527 (752)
T ss_pred             -------cCCHHHHhhcCCCEEEEeCCC
Confidence                   233343345669999999995

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.79  E-value=0.00031  Score=62.21  Aligned_cols=93  Identities=24%  Similarity=0.240  Sum_probs=69.6

Q ss_pred             EEEEcCCHHHHHHHHHH--HhCCCcEEEEecCCcc--cc-----------------------------------------
Q 021871          210 VVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL--LQ-----------------------------------------  244 (306)
Q Consensus       210 v~viG~g~~a~e~a~~l--~~~~~~v~~~~~~~~~--~~-----------------------------------------  244 (306)
                      |+|||+|+.|.-+|..+  +..+.+|.++++.+..  ..                                         
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y   81 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY   81 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence            78999999999999999  7778899999776543  10                                         


Q ss_pred             -cccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          245 -RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       245 -~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                       ..-...+.+.+.+.+. .+..++.++.|++|+.++++.  .|.+++|+.+.++.||-|.|.
T Consensus        82 ~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~--~v~~~~g~~i~a~~VvDa~g~  140 (374)
T PF05834_consen   82 CMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGV--LVVLADGRTIRARVVVDARGP  140 (374)
T ss_pred             EEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceE--EEEECCCCEEEeeEEEECCCc
Confidence             0011235566667777 445577788999999754423  588999999999999999884

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK06185 hypothetical protein; Provisional

Probab=97.78  E-value=0.00061  Score=61.07  Aligned_cols=98  Identities=22%  Similarity=0.270  Sum_probs=70.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc----------------------------------------cc-
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------------------------QR-  245 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~----------------------------------------~~-  245 (306)
                      ...|+|||+|.+|.-+|..|++.+.+|+++++.+...                                        .. 
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            3569999999999999999999999999998764210                                        00 


Q ss_pred             -------------------ccCHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEE--eCCCC-EEecCEEEEe
Q 021871          246 -------------------LFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK--LEDGS-TIDADTVILL  302 (306)
Q Consensus       246 -------------------~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~--~~~G~-~i~~d~vv~a  302 (306)
                                         .....+.+.+.+.+.+ .|++++.+++++++... ++.+.+|.  ..+|+ ++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A  164 (407)
T PRK06185         86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA  164 (407)
T ss_pred             EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence                               0011233445555554 48999999999999864 55554444  44664 7999999999


Q ss_pred             cCC
Q 021871          303 PYD  305 (306)
Q Consensus       303 ~g~  305 (306)
                      .|.
T Consensus       165 dG~  167 (407)
T PRK06185        165 DGR  167 (407)
T ss_pred             CCC
Confidence            985

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.77  E-value=0.00056  Score=61.86  Aligned_cols=99  Identities=17%  Similarity=0.235  Sum_probs=70.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCccccc-----------------------------ccC--HHHHHH
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR-----------------------------LFT--PSLAQR  254 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~-v~~~~~~~~~~~~-----------------------------~~~--~~~~~~  254 (306)
                      ..+|+|||+|.+|+-+|..|.+.+.. +.++++...+...                             .++  +...+.
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y   87 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY   87 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence            45799999999999999999999988 9999888643210                             000  125666


Q ss_pred             HHHHHHHcCC--EEEcCceEEEEEeCCCCcEEEEEeCCCCE--EecCEEEEecCC
Q 021871          255 YEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTVILLPYD  305 (306)
Q Consensus       255 ~~~~~~~~gv--~i~~~~~v~~i~~~~~~~v~~v~~~~G~~--i~~d~vv~a~g~  305 (306)
                      +...+++.+.  ++..++.|..+..++++..-.|++++|..  +.+|.||+|||.
T Consensus        88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~  142 (443)
T COG2072          88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH  142 (443)
T ss_pred             HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence            7777776654  34445666666665555433688888865  459999999995

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.77  E-value=4e-05  Score=68.56  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=30.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ..+||+|||||.||+.||...++.|.   ++.++.-+.
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~---ktlLlT~~~   37 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGA---KTLLLTLNL   37 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCC---eEEEEEcCC
Confidence            34899999999999999999999998   777766543

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.75  E-value=2.1e-05  Score=67.26  Aligned_cols=36  Identities=19%  Similarity=0.395  Sum_probs=29.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ||+||||+|.+|..+|.+|++.+.  .+|+|+|+....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~--~~VlvlEaG~~~   36 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGN--KKVLVLEAGPRY   36 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTT--S-EEEEESSBSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCC--CcEEEEEccccC
Confidence            699999999999999999999862  289999998664

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.74  E-value=0.00012  Score=67.13  Aligned_cols=89  Identities=24%  Similarity=0.278  Sum_probs=66.2

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-------cc-ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+++++|||+|..|+..|..|++.+.+|+++.+.+.+.       +. .++..+.....+.+++.||+++.++.+.. . 
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~-  219 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D-  219 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence            35799999999999999999999999999999887643       11 12445666666778889999999987741 1 


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                              +.. ++....+|.||+|||.
T Consensus       220 --------~~~-~~~~~~~d~VilAtGa  238 (485)
T TIGR01317       220 --------ISA-DELKEQFDAVVLAGGA  238 (485)
T ss_pred             --------cCH-HHHHhhCCEEEEccCC
Confidence                    100 1113568999999985

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.73  E-value=0.00068  Score=60.38  Aligned_cols=95  Identities=22%  Similarity=0.289  Sum_probs=69.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc--------------------------------------cc---
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------------------------RL---  246 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~--------------------------------------~~---  246 (306)
                      ..|+|||+|..|+-+|..|++.+.+|+++++.+....                                      ..   
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~~   87 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLI   87 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCCC
Confidence            4699999999999999999999999999988643100                                      00   


Q ss_pred             ------c---------------CHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          247 ------F---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       247 ------~---------------~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                            +               ...+.+.+.+.+.+. ++. +.+++|++++.+ ++.+ .|++++|+++.+|.||.|.|
T Consensus        88 ~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~vI~AdG  164 (388)
T PRK07494         88 RAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPR-EDEV-TVTLADGTTLSARLVVGADG  164 (388)
T ss_pred             CCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEc-CCeE-EEEECCCCEEEEeEEEEecC
Confidence                  0               012334455556555 455 779999999864 4444 47888888999999999998


Q ss_pred             C
Q 021871          305 D  305 (306)
Q Consensus       305 ~  305 (306)
                      .
T Consensus       165 ~  165 (388)
T PRK07494        165 R  165 (388)
T ss_pred             C
Confidence            5

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.70  E-value=0.00015  Score=71.93  Aligned_cols=89  Identities=21%  Similarity=0.173  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  278 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  278 (306)
                      +++|+|||+|+.|+..|.+|++.+.+|+++.+.+.+...        ..+.++.+...+.+++.||++++++.+.     
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg-----  504 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG-----  504 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-----
Confidence            578999999999999999999999999999988665321        1245677777788899999999997541     


Q ss_pred             CCCcEEEEEeCCC-CEEecCEEEEecCC
Q 021871          279 SDGRVAAVKLEDG-STIDADTVILLPYD  305 (306)
Q Consensus       279 ~~~~v~~v~~~~G-~~i~~d~vv~a~g~  305 (306)
                      .+     +...+- +...+|.||+|||.
T Consensus       505 ~~-----~~~~~l~~~~~yDaViIATGa  527 (1006)
T PRK12775        505 KT-----FTVPQLMNDKGFDAVFLGVGA  527 (1006)
T ss_pred             Cc-----cCHHHHhhccCCCEEEEecCC
Confidence            11     111110 02458999999996

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.70  E-value=4.7e-05  Score=67.66  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=31.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+|+|||||.+|+.+|..|+++|+   +|+|+|+++.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~---~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGV---PVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC---cEEEEecccc
Confidence            389999999999999999999998   9999998655

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.69  E-value=5.4e-05  Score=69.88  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+||||||+| +||+||+++++.|.   +|+|+||...
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~---~V~vlEk~~~   40 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGL---SVALVEATDK   40 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCC---cEEEEecCCC
Confidence            35799999999 99999999999998   9999999865

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.68  E-value=0.00095  Score=59.76  Aligned_cols=96  Identities=18%  Similarity=0.251  Sum_probs=67.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc---------------------------------------c---
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------------R---  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~---------------------------------------~---  245 (306)
                      ++|+|||+|..|+-+|..|++.|.+|+++.+.+.+..                                       .   
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            6899999999999999999999988988887654210                                       0   


Q ss_pred             -cc--------------------CHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEe---CCCCEEecCEEE
Q 021871          246 -LF--------------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTVI  300 (306)
Q Consensus       246 -~~--------------------~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~~i~~d~vv  300 (306)
                       ..                    ...+.+.+.+.+.+ .+++++++++|++++..+++ + .+++   .+++++.+|.||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvI  160 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLI  160 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEE
Confidence             00                    01233444555544 37999999999999864343 3 3444   334579999999


Q ss_pred             EecCC
Q 021871          301 LLPYD  305 (306)
Q Consensus       301 ~a~g~  305 (306)
                      -|-|.
T Consensus       161 gADG~  165 (400)
T PRK06475        161 ACDGV  165 (400)
T ss_pred             ECCCc
Confidence            99875

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.67  E-value=5.6e-05  Score=70.41  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ..+||+|||+|.|||+||..+++.|.   +|+|+||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~---~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGK---RVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            45899999999999999999999998   999999987

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.67  E-value=0.00076  Score=67.14  Aligned_cols=97  Identities=20%  Similarity=0.147  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccccc----------CHHHHHHHHHHHHHc-CCEEEcCceEEEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN-GVKFVKGASIKNL  275 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-gv~i~~~~~v~~i  275 (306)
                      ..+|+|||+|+.|+..|..+++.+.+|+++...+.+.+...          ...+...+.+.+++. +++++.++.|..+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            46799999999999999999999999999998766543211          123334455556655 5999999999888


Q ss_pred             EeCCCCcEEEEEeC--------CC------CEEecCEEEEecCC
Q 021871          276 EAGSDGRVAAVKLE--------DG------STIDADTVILLPYD  305 (306)
Q Consensus       276 ~~~~~~~v~~v~~~--------~G------~~i~~d~vv~a~g~  305 (306)
                      ..  ++.+..+...        ++      ..+.+|.||+|||.
T Consensus       243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa  284 (985)
T TIGR01372       243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGA  284 (985)
T ss_pred             ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCC
Confidence            63  3332222110        11      15889999999995

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.67  E-value=0.00023  Score=69.75  Aligned_cols=87  Identities=21%  Similarity=0.169  Sum_probs=62.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  278 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  278 (306)
                      +++|+|||+|+.|+..|..|++.+.+|+++.+.+.+...        ..+.+..+...+.+.+.||+++.++.. .    
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-d----  611 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP-D----  611 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc-c----
Confidence            578999999999999999999999999999987654321        123445555556777889999988421 1    


Q ss_pred             CCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          279 SDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       279 ~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                             +...+.....+|.||+|||.
T Consensus       612 -------~~ve~l~~~gYDaVIIATGA  631 (1012)
T TIGR03315       612 -------LTVAELKNQGYKYVILAIGA  631 (1012)
T ss_pred             -------eEhhhhhcccccEEEECCCC
Confidence                   11222234568999999995

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.67  E-value=0.00074  Score=53.77  Aligned_cols=99  Identities=22%  Similarity=0.184  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc-------------------------------------cCH
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FTP  249 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~-------------------------------------~~~  249 (306)
                      .-.|+|+|+|++|+-.|..|++.+.+|.++.+...+....                                     .+.
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~   96 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV   96 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence            3569999999999999999999999999999875543110                                     012


Q ss_pred             HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC------C-----CEEecCEEEEecCC
Q 021871          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G-----STIDADTVILLPYD  305 (306)
Q Consensus       250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~------G-----~~i~~d~vv~a~g~  305 (306)
                      .+...+....-+.|++++..+.|+.+-..++++|.+|.+.-      |     -.++++.||-|||.
T Consensus        97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH  163 (230)
T PF01946_consen   97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH  163 (230)
T ss_dssp             HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred             HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence            34445555555589999999999987654557888877632      2     17999999999986

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.00047  Score=54.80  Aligned_cols=95  Identities=17%  Similarity=0.227  Sum_probs=70.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcE--------------------EEEecCCcccccccCHHHHHHHHHHHHHcCCEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDT--------------------TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  266 (306)
                      ..+|+|||+|+.+.-.|..+++.-.+.                    |-+..-|.+......+++.+.+++...+.|.+|
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            468999999999998888887653222                    223344445555567899999999999999999


Q ss_pred             EcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          267 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       267 ~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++. .|.+++.+ ..-. .+.++. +.+.+|.||+|||-
T Consensus        88 ~tE-tVskv~~s-skpF-~l~td~-~~v~~~avI~atGA  122 (322)
T KOG0404|consen   88 ITE-TVSKVDLS-SKPF-KLWTDA-RPVTADAVILATGA  122 (322)
T ss_pred             eee-ehhhcccc-CCCe-EEEecC-CceeeeeEEEeccc
Confidence            987 58888853 3222 466654 48999999999984

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.66  E-value=0.00017  Score=65.84  Aligned_cols=89  Identities=20%  Similarity=0.241  Sum_probs=65.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+++|+|||+|+.|+..|..|++.+.+|+++.+.+.+...        ..+..+.....+.+.+.||+++.++.+.. ..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~~  220 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-DI  220 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-cC
Confidence            3578999999999999999999999999999988765321        12445556666778889999999986632 10


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                               ... .....+|.||+|||.
T Consensus       221 ---------~~~-~~~~~~d~vvlAtGa  238 (471)
T PRK12810        221 ---------TAE-ELLAEYDAVFLGTGA  238 (471)
T ss_pred             ---------CHH-HHHhhCCEEEEecCC
Confidence                     000 112468999999986

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.65  E-value=0.0012  Score=58.86  Aligned_cols=95  Identities=23%  Similarity=0.284  Sum_probs=68.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC--ccc---c---c--ccC------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL---Q---R--LFT------------------------------  248 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~--~~~---~---~--~~~------------------------------  248 (306)
                      +|+|||+|+.|.-+|..|++.|.+|+++++.+  .+.   +   +  .+.                              
T Consensus         5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~~   84 (384)
T PRK08849          5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLETW   84 (384)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEEE
Confidence            69999999999999999999999999999764  100   0   0  000                              


Q ss_pred             -------------------------HHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEe
Q 021871          249 -------------------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILL  302 (306)
Q Consensus       249 -------------------------~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a  302 (306)
                                               ..+...+.+.+++ .|++++.+++|++++.++++ + .|.+++|.++.+|.||-|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvIgA  162 (384)
T PRK08849         85 EHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLESGAEIEAKWVIGA  162 (384)
T ss_pred             eCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECCCCEEEeeEEEEe
Confidence                                     0011122233333 37999999999999875444 3 588889999999999999


Q ss_pred             cCC
Q 021871          303 PYD  305 (306)
Q Consensus       303 ~g~  305 (306)
                      .|.
T Consensus       163 DG~  165 (384)
T PRK08849        163 DGA  165 (384)
T ss_pred             cCC
Confidence            986

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.64  E-value=0.00019  Score=68.10  Aligned_cols=89  Identities=17%  Similarity=0.266  Sum_probs=66.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+++|+|||+|+.|+..|..|+..|.+|+++.+.+.+...        .++..+.+...+.+++.||++++++.+..   
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence            4689999999999999999999999999999998764321        13555666666778899999999987631   


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                        +     +.+.+ ....+|.||+|||.
T Consensus       386 --~-----~~~~~-l~~~~DaV~latGa  405 (639)
T PRK12809        386 --D-----ITFSD-LTSEYDAVFIGVGT  405 (639)
T ss_pred             --c-----CCHHH-HHhcCCEEEEeCCC
Confidence              0     11111 13458999999985

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.64  E-value=0.00099  Score=59.74  Aligned_cols=96  Identities=22%  Similarity=0.341  Sum_probs=70.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Ccc------------c--------------ccc--------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL------------L--------------QRL--------------  246 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~-~~~------------~--------------~~~--------------  246 (306)
                      .+|+|||+|..|.-+|..|++.|.+|+++++. +..            +              ...              
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~   84 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEVW   84 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEEE
Confidence            47999999999999999999999999999875 110            0              000              


Q ss_pred             ---------c---------------CHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEE
Q 021871          247 ---------F---------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL  301 (306)
Q Consensus       247 ---------~---------------~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~  301 (306)
                               +               ...+...+.+.+.+ .|++++.+++|++++.+++ .+ .|.+++|+++.+|.||-
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~-~~-~v~~~~g~~~~a~lvIg  162 (405)
T PRK08850         85 EQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGES-EA-WLTLDNGQALTAKLVVG  162 (405)
T ss_pred             eCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC-eE-EEEECCCCEEEeCEEEE
Confidence                     0               01123344444444 4799999999999986444 33 58888999999999999


Q ss_pred             ecCC
Q 021871          302 LPYD  305 (306)
Q Consensus       302 a~g~  305 (306)
                      |.|.
T Consensus       163 ADG~  166 (405)
T PRK08850        163 ADGA  166 (405)
T ss_pred             eCCC
Confidence            9985

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.62  E-value=0.00088  Score=60.26  Aligned_cols=95  Identities=17%  Similarity=0.194  Sum_probs=66.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcccccc-----------------c-----------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL-----------------F-----------------------  247 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~~~~~-----------------~-----------------------  247 (306)
                      +|+|||+|..|+-+|..|.+.+ .+|+++++.+.+....                 .                       
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6899999999999999999987 5899998876532100                 0                       


Q ss_pred             CHH------------------HHHHHHHHHHHc--CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPS------------------LAQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~------------------~~~~~~~~~~~~--gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ...                  ....+.+.|.+.  ++.++.+++|++++.++++ + .|.+++|+++++|.||.|.|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vVgADG~  157 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE-V-QVLFTDGTEYRCDLLIGADGI  157 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc-E-EEEEcCCCEEEeeEEEECCCc
Confidence            000                  011122222221  4568889999999874444 4 588889989999999999985

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.62  E-value=8.4e-05  Score=70.17  Aligned_cols=36  Identities=31%  Similarity=0.512  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+||+|||||.|||+||..+++.|.   +|+|+||...
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~---~V~lieK~~~   42 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGL---RVAVVCKSLF   42 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCC---CEEEEeccCC
Confidence            35799999999999999999999998   9999999754

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.59  E-value=0.0017  Score=57.90  Aligned_cols=96  Identities=28%  Similarity=0.383  Sum_probs=69.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCC-c------c-------c-------------c-------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPEN-H------L-------L-------------Q-------------  244 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~---~~~v~~~~~~~-~------~-------~-------------~-------------  244 (306)
                      -+|+|||+|..|.-+|..|++.   |.+|+++++.. .      .       .             +             
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   83 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH   83 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence            4689999999999999999998   99999999841 1      0       0             0             


Q ss_pred             ---c------cc---------------CHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEE
Q 021871          245 ---R------LF---------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTV  299 (306)
Q Consensus       245 ---~------~~---------------~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~v  299 (306)
                         .      .+               ...+...+.+.+.+ .|++++.+++|+++... ++.+ .|++++|..+.+|.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~v  161 (395)
T PRK05732         84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT-QGSV-RVTLDDGETLTGRLL  161 (395)
T ss_pred             EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeE-EEEECCCCEEEeCEE
Confidence               0      00               01122334444444 47999999999999863 4444 488888888999999


Q ss_pred             EEecCC
Q 021871          300 ILLPYD  305 (306)
Q Consensus       300 v~a~g~  305 (306)
                      |.|.|.
T Consensus       162 I~AdG~  167 (395)
T PRK05732        162 VAADGS  167 (395)
T ss_pred             EEecCC
Confidence            999985

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.59  E-value=0.0014  Score=58.08  Aligned_cols=94  Identities=16%  Similarity=0.236  Sum_probs=69.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC----cc----c-----------------------------------cc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL----L-----------------------------------QR  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~----~~----~-----------------------------------~~  245 (306)
                      +|+|||+|..|.-+|..|++.+.+|+++++.+    .+    .                                   +.
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   82 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK   82 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence            58999999999999999999999999998652    10    0                                   00


Q ss_pred             ------------------ccCHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          246 ------------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       246 ------------------~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                        .....+...+.+.+.+. +++++.+++++++...++ .+ .|.++++ ++.+|.||-|-|.
T Consensus        83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v-~v~~~~~-~~~adlvIgADG~  158 (374)
T PRK06617         83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHND-YS-IIKFDDK-QIKCNLLIICDGA  158 (374)
T ss_pred             CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC-eE-EEEEcCC-EEeeCEEEEeCCC
Confidence                              00123455566666665 499999999999986444 44 4777766 9999999999885

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.59  E-value=9.6e-05  Score=69.19  Aligned_cols=37  Identities=27%  Similarity=0.342  Sum_probs=33.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ..+||||||+|.+||+||+.+++.|.   +|+|+||....
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~---~VivlEk~~~~   46 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGL---DTLVVEKSAHF   46 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCC---cEEEEEcCCCC
Confidence            35899999999999999999999998   99999998764

>PLN02661 Putative thiazole synthesis

Probab=97.58  E-value=0.0016  Score=56.30  Aligned_cols=97  Identities=19%  Similarity=0.203  Sum_probs=69.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCCcccccc-------------------------------------cCH
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQRL-------------------------------------FTP  249 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~-~~~v~~~~~~~~~~~~~-------------------------------------~~~  249 (306)
                      -.|+|||+|..|+-.|..+++. +.+|+++.+...+....                                     ...
T Consensus        93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~  172 (357)
T PLN02661         93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAA  172 (357)
T ss_pred             CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchH
Confidence            4799999999999999999975 78999998875432100                                     001


Q ss_pred             HHHHHHHH-HHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC------C--C------CEEecCEEEEecCC
Q 021871          250 SLAQRYEQ-LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------D--G------STIDADTVILLPYD  305 (306)
Q Consensus       250 ~~~~~~~~-~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~------~--G------~~i~~d~vv~a~g~  305 (306)
                      .+.+.+.+ .+++.|++++.++.+.++.. +++++.+|.+.      +  +      ..+.++.||+|||.
T Consensus       173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh  242 (357)
T PLN02661        173 LFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH  242 (357)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence            12223443 44457999999999999886 56777787741      1  1      26899999999994

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.57  E-value=0.00011  Score=68.51  Aligned_cols=57  Identities=28%  Similarity=0.339  Sum_probs=42.1

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-CCC--EEec-CEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-~G~--~i~~-d~vv~a~g~  305 (306)
                      ...+...+.+.+++.|++++++++++++.. ++++|.+|... +|+  .+.+ +.||+|||-
T Consensus       207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG  267 (557)
T PRK12844        207 GAALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRVVGVVVVRDGREVLIRARRGVLLASGG  267 (557)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEEEECCeEEEEEecceEEEecCC
Confidence            456677777888888999999999998875 46777787663 343  3667 478988874

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.56  E-value=8.2e-05  Score=71.90  Aligned_cols=33  Identities=24%  Similarity=0.318  Sum_probs=30.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAY   88 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~~   88 (306)
                      +|+|||||++||++|..|++.  |+   +|+|+|+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~---~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAH---EVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCC---eEEEEecCCC
Confidence            799999999999999999998  66   9999999875

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.55  E-value=9e-05  Score=70.20  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=32.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+||+|||||.|||.||..+++.|.   +|+|+||...
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~---~VivleK~~~   39 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGL---DTIVLSLVPA   39 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCC---CEEEEeCCCC
Confidence            5799999999999999999999998   9999998754

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.55  E-value=0.00068  Score=59.90  Aligned_cols=90  Identities=22%  Similarity=0.255  Sum_probs=61.0

Q ss_pred             EEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCccccc--------ccCHHHH---------------------------
Q 021871          210 VVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR--------LFTPSLA---------------------------  252 (306)
Q Consensus       210 v~viG~g~~a~e~a~~l~~~--~~~v~~~~~~~~~~~~--------~~~~~~~---------------------------  252 (306)
                      |+|||+|..|..+|..|++.  +.+|.++.+.+...+.        ...+...                           
T Consensus         2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~   81 (370)
T TIGR01789         2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKT   81 (370)
T ss_pred             EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCC
Confidence            78999999999999999986  8899999887633210        0111000                           


Q ss_pred             -------HHHHHH-HHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          253 -------QRYEQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       253 -------~~~~~~-~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                             ..+.+. +++.+..++.+++|++++  +++    |++.+|+++.+|.||.|.|.
T Consensus        82 ~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~--~~~----v~l~dg~~~~A~~VI~A~G~  136 (370)
T TIGR01789        82 AYRSMTSTRFHEGLLQAFPEGVILGRKAVGLD--ADG----VDLAPGTRINARSVIDCRGF  136 (370)
T ss_pred             CceEEEHHHHHHHHHHhhcccEEecCEEEEEe--CCE----EEECCCCEEEeeEEEECCCC
Confidence                   011122 222244477788999885  332    45578889999999999984

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.54  E-value=0.00032  Score=66.64  Aligned_cols=89  Identities=21%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-------cc-ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+++|+|||+|+.|+..|..|+..+.+|+++.+.+.+.       +. ..+..+.+...+.+.+.|++++.++.+. +. 
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d-  269 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD-  269 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence            46789999999999999999999999999999887642       11 1345566666777888999999987541 11 


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                              +...+. ...+|.||+|||.
T Consensus       270 --------v~~~~~-~~~~DaVilAtGa  288 (652)
T PRK12814        270 --------ITLEEL-QKEFDAVLLAVGA  288 (652)
T ss_pred             --------cCHHHH-HhhcCEEEEEcCC
Confidence                    112211 2359999999985

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.54  E-value=0.0012  Score=59.08  Aligned_cols=40  Identities=23%  Similarity=0.236  Sum_probs=33.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCC-CCCcEEEeccCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAP   90 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~-~~~~V~vie~~~~~~   90 (306)
                      .+++=|||+|+|+|++|.+|.+-+. +..+|+|+|+.+..+
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~G   42 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPG   42 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCC
Confidence            3578899999999999999998654 677999999987653

>PRK02106 choline dehydrogenase; Validated

Probab=97.54  E-value=0.00011  Score=68.56  Aligned_cols=37  Identities=16%  Similarity=0.340  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHH-cCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~-~g~~~~~V~vie~~~~   88 (306)
                      ...+|+||||||.+|+.+|.+|++ .|+   +|+|+|+...
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~---~VlvlEaG~~   40 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDV---SVLLLEAGGP   40 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCC---eEEEecCCCc
Confidence            345899999999999999999999 677   9999999854

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.52  E-value=0.0023  Score=57.09  Aligned_cols=97  Identities=15%  Similarity=0.104  Sum_probs=69.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc------c-----------------------------------c-
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------Q-----------------------------------R-  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~------~-----------------------------------~-  245 (306)
                      .+|+|||+|+.|.-+|..|++.|.+|+++++.+...      .                                   . 
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            469999999999999999999999999998876310      0                                   0 


Q ss_pred             ----cc-------------CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe-CCCC--EEecCEEEEecCC
Q 021871          246 ----LF-------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       246 ----~~-------------~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~-~~G~--~i~~d~vv~a~g~  305 (306)
                          .+             .+.+.+.+.+...+.|++++.++++++++..+++.+ .|.+ .+|+  ++.+|.||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~~G~~~~i~ad~vVgADG~  161 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRP-YVTYEKDGEEHRLDCDFIAGCDGF  161 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCce-EEEEEcCCeEEEEEeCEEEECCCC
Confidence                00             122334455555677999999999999975222222 4555 4664  6899999999875

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.51  E-value=0.00034  Score=66.61  Aligned_cols=89  Identities=20%  Similarity=0.273  Sum_probs=64.6

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+++|+|||+|+.|+..|..|+..+.+|+++.+.+.+.+.        .++..+.+...+.+++.|++++.++.|..   
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence            4679999999999999999999999999999987664311        12345555556677888999999986621   


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                        +     +...+ ....+|.||+|||.
T Consensus       403 --~-----i~~~~-~~~~~DavilAtGa  422 (654)
T PRK12769        403 --D-----ISLES-LLEDYDAVFVGVGT  422 (654)
T ss_pred             --c-----CCHHH-HHhcCCEEEEeCCC
Confidence              0     11111 12358999999985

>PRK06996 hypothetical protein; Provisional

Probab=97.50  E-value=0.0017  Score=58.07  Aligned_cols=96  Identities=16%  Similarity=0.203  Sum_probs=71.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC----CcEEEEecCCccc------------------------------------c--
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWK----LDTTIIFPENHLL------------------------------------Q--  244 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~----~~v~~~~~~~~~~------------------------------------~--  244 (306)
                      ...|+|||+|+.|.-+|..|++.+    .+|+++.+.+...                                    .  
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~   90 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR   90 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence            457999999999999999999876    4688888753110                                    0  


Q ss_pred             c--------------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC---CEEecCEEEE
Q 021871          245 R--------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTVIL  301 (306)
Q Consensus       245 ~--------------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G---~~i~~d~vv~  301 (306)
                      .                    .....+.+.+.+.+++.|++++.++++++++.++++.  .+.+.+|   +++.+|.||-
T Consensus        91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v--~v~~~~~~g~~~i~a~lvIg  168 (398)
T PRK06996         91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGV--TLALGTPQGARTLRARIAVQ  168 (398)
T ss_pred             CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeE--EEEECCCCcceEEeeeEEEE
Confidence            0                    0013456778888888899999999999998654543  4666644   5899999999


Q ss_pred             ecC
Q 021871          302 LPY  304 (306)
Q Consensus       302 a~g  304 (306)
                      |.|
T Consensus       169 ADG  171 (398)
T PRK06996        169 AEG  171 (398)
T ss_pred             CCC
Confidence            988

>PRK06126 hypothetical protein; Provisional

Probab=97.50  E-value=0.0022  Score=59.94  Aligned_cols=99  Identities=22%  Similarity=0.291  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-----------------------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  245 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-----------------------------------------  245 (306)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++.+.+.....                                         
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            357999999999999999999999999998876431100                                         


Q ss_pred             -------------c----------------------cC-HHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEe
Q 021871          246 -------------L----------------------FT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL  288 (306)
Q Consensus       246 -------------~----------------------~~-~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~  288 (306)
                                   .                      .+ ..+...+.+.+++ .|++++++++|++++.++++....+..
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~  166 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED  166 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence                         0                      00 0122334444444 489999999999999744443322322


Q ss_pred             -CCCC--EEecCEEEEecCC
Q 021871          289 -EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       289 -~~G~--~i~~d~vv~a~g~  305 (306)
                       .+|+  ++.+|.||.|.|.
T Consensus       167 ~~~g~~~~i~ad~vVgADG~  186 (545)
T PRK06126        167 LDGGESLTIRADYLVGCDGA  186 (545)
T ss_pred             CCCCcEEEEEEEEEEecCCc
Confidence             3454  6899999999985

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.49  E-value=0.0023  Score=58.45  Aligned_cols=95  Identities=26%  Similarity=0.360  Sum_probs=68.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc--------------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------------------------  243 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~--------------------------------------------  243 (306)
                      ..|+|||+|..|+-.|..+++.+.+|.++...+...                                            
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            368999999999999999998888888877642100                                            


Q ss_pred             ---------------------------cc------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC
Q 021871          244 ---------------------------QR------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  290 (306)
Q Consensus       244 ---------------------------~~------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~  290 (306)
                                                 ++      .....+.+.+.+.+++.||+++.+ .++.+.. +++.+.++.. +
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~  158 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D  158 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence                                       00      001234556667777889999876 7878765 4677777776 4


Q ss_pred             CCEEecCEEEEecCC
Q 021871          291 GSTIDADTVILLPYD  305 (306)
Q Consensus       291 G~~i~~d~vv~a~g~  305 (306)
                      |+.+.+|.||+|||.
T Consensus       159 g~~i~a~~VVLATGG  173 (466)
T PRK08401        159 GELLKFDATVIATGG  173 (466)
T ss_pred             CEEEEeCeEEECCCc
Confidence            568999999999985

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.48  E-value=0.00014  Score=66.77  Aligned_cols=36  Identities=25%  Similarity=0.369  Sum_probs=33.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      +||+|||+|++|+.+|+.|++.|+   +|+++|+....+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~---~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGL---KVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCC---eEEEEeccCccC
Confidence            599999999999999999999998   999999987754

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.47  E-value=0.00044  Score=62.11  Aligned_cols=96  Identities=22%  Similarity=0.333  Sum_probs=68.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc---------------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------------------------------------  243 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~---------------------------------------------  243 (306)
                      .|.|||+|..|+|.|...++.|.++.++.....-.                                             
T Consensus         6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~s   85 (621)
T COG0445           6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNSS   85 (621)
T ss_pred             ceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccCC
Confidence            58999999999999999999998887776553311                                             


Q ss_pred             --ccc------cCH-HHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          244 --QRL------FTP-SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       244 --~~~------~~~-~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                        |..      .+. .....+++.++. .|..++.+ .|..+...++.+|.+|.+.+|..+.|+.||++||.
T Consensus        86 KGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT  156 (621)
T COG0445          86 KGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT  156 (621)
T ss_pred             CcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence              000      000 123344555543 37887776 57777653444688999999999999999999984

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.43  E-value=0.00015  Score=67.35  Aligned_cols=36  Identities=25%  Similarity=0.458  Sum_probs=31.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...+||+|||+|.|||+||..+. .|.   +|+|+||...
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~---~V~lieK~~~   42 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-SHL---RVGLITKDTL   42 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-cCC---CEEEEEccCC
Confidence            34579999999999999999996 476   9999999865

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.43  E-value=0.00015  Score=67.98  Aligned_cols=33  Identities=33%  Similarity=0.557  Sum_probs=30.0

Q ss_pred             cEEEEcCChHHHHHHHHHH----HcCCCCCcEEEeccCCC
Q 021871           53 EFVIVGGGNAAGYAARTFV----EHGMADGRLCIVSKEAY   88 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~----~~g~~~~~V~vie~~~~   88 (306)
                      ||+|||||.|||+||..++    +.|.   +|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~---~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGL---KIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCC---eEEEEEccCC
Confidence            7999999999999999998    6677   9999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.42  E-value=0.00018  Score=61.62  Aligned_cols=37  Identities=22%  Similarity=0.442  Sum_probs=33.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ....||+|||||.+|.+.|+.|++.|.   +|.|||++-.
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdGR---rVhVIERDl~   79 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKDGR---RVHVIERDLS   79 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhCCc---EEEEEecccc
Confidence            345799999999999999999999998   9999999744

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.41  E-value=1.1e-05  Score=71.70  Aligned_cols=87  Identities=15%  Similarity=0.192  Sum_probs=61.2

Q ss_pred             CCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC---C
Q 021871          215 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G  291 (306)
Q Consensus       215 ~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---G  291 (306)
                      +-..++|..+.|.+....-.+++-...    ..+..+.-.+.-...+.|..+....+|.+.-.++++++.++...|   |
T Consensus       194 Sk~~alE~fPmL~~~~L~Ga~VYyDGQ----~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG  269 (680)
T KOG0042|consen  194 SKKEALEIFPMLRKDNLKGAMVYYDGQ----HNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITG  269 (680)
T ss_pred             cHHHHHHhCccccccCceeEEEEecCC----CchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecC
Confidence            344578888888877655555443322    135666666777777889999888889887766777776766544   4


Q ss_pred             C--EEecCEEEEecCC
Q 021871          292 S--TIDADTVILLPYD  305 (306)
Q Consensus       292 ~--~i~~d~vv~a~g~  305 (306)
                      +  .|.+..||.|||-
T Consensus       270 ~e~~I~Ak~VVNATGp  285 (680)
T KOG0042|consen  270 KEYEIRAKVVVNATGP  285 (680)
T ss_pred             cEEEEEEEEEEeCCCC
Confidence            4  4789999999984

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.41  E-value=0.0038  Score=55.63  Aligned_cols=94  Identities=20%  Similarity=0.308  Sum_probs=66.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Cccc--------------------------------cc----------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLL--------------------------------QR----------  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~-~~~~--------------------------------~~----------  245 (306)
                      .|+|||+|+.|.-.|..|++.+.+|.++++. +...                                +.          
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            4899999999999999999999999999886 2110                                00          


Q ss_pred             ---c---cC-HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC------C--CEEecCEEEEecCC
Q 021871          246 ---L---FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G--STIDADTVILLPYD  305 (306)
Q Consensus       246 ---~---~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~------G--~~i~~d~vv~a~g~  305 (306)
                         .   .+ ..+.+.+.+.+.+.|++++.+ .++++..++ +.+ .|++.+      |  .++.+|.||-|.|.
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~-~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~  153 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR-DGV-TLTYRTPKKGAGGEKGSVEADVVIGADGA  153 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC-CeE-EEEEEeccccCCCcceEEEeCEEEECCCC
Confidence               0   00 123345666677789999866 588888644 433 354432      2  36999999999985

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PLN03000 amine oxidase

Probab=97.40  E-value=0.00025  Score=68.14  Aligned_cols=38  Identities=24%  Similarity=0.388  Sum_probs=34.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ...+|+|||||++||.+|+.|.+.|+   +|+|+|+++..+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~---~V~VlE~~~riG  220 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGF---KVTVLEGRKRPG  220 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCC---cEEEEEccCcCC
Confidence            45799999999999999999999998   999999987754

>PRK07538 hypothetical protein; Provisional

Probab=97.40  E-value=0.0037  Score=56.20  Aligned_cols=97  Identities=18%  Similarity=0.197  Sum_probs=66.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-------------------------------------------  245 (306)
                      +|+|||+|..|+-+|..|++.+.+|+++.+.+.+.+.                                           
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~   81 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI   81 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence            5899999999999999999999999999887542100                                           


Q ss_pred             -----------------ccCHHHHHHHHHHHHH-cC-CEEEcCceEEEEEeCCCCcEEEEEeC-CC--CEEecCEEEEec
Q 021871          246 -----------------LFTPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTVILLP  303 (306)
Q Consensus       246 -----------------~~~~~~~~~~~~~~~~-~g-v~i~~~~~v~~i~~~~~~~v~~v~~~-~G--~~i~~d~vv~a~  303 (306)
                                       .....+.+.+.+.+.+ .| ++++.+++|++++.++++.++.+... +|  +++.+|.||-|-
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgAD  161 (413)
T PRK07538         82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGAD  161 (413)
T ss_pred             eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECC
Confidence                             0001122334444444 35 57999999999987666644333322 12  489999999998


Q ss_pred             CC
Q 021871          304 YD  305 (306)
Q Consensus       304 g~  305 (306)
                      |.
T Consensus       162 G~  163 (413)
T PRK07538        162 GI  163 (413)
T ss_pred             CC
Confidence            85

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.37  E-value=0.0035  Score=58.35  Aligned_cols=55  Identities=22%  Similarity=0.313  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-------CC-CEEecCEEEEecCC
Q 021871          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------DG-STIDADTVILLPYD  305 (306)
Q Consensus       251 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-------~G-~~i~~d~vv~a~g~  305 (306)
                      +...+.+.+++.||+++.++.+.++..++++++.++...       +| ..+.++.||+|||-
T Consensus       146 i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG  208 (541)
T PRK07804        146 VQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG  208 (541)
T ss_pred             HHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence            445566777778999999999999876445677777653       22 35889999999984

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.37  E-value=0.00024  Score=66.00  Aligned_cols=35  Identities=29%  Similarity=0.440  Sum_probs=31.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+||+|||+|.|||+||..+++. .   +|+|+||...
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~---~VilveK~~~   41 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-R---RVAVLSKGPL   41 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-C---CEEEEeccCC
Confidence            357999999999999999999885 5   9999999865

>PLN02815 L-aspartate oxidase

Probab=97.36  E-value=0.00024  Score=66.52  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=31.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+||+|||+|.|||+||..+++.|    +|+|+||...
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G----~VvlleK~~~   62 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG----TVAIITKDEP   62 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC----CEEEEECCCC
Confidence            3579999999999999999999887    5999999765

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.35  E-value=5.3e-05  Score=59.52  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=32.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      .||+|||+|.+||++|+.+..+. |+.+|++||..-..
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~r-PdlkvaIIE~SVaP  113 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNR-PDLKVAIIESSVAP  113 (328)
T ss_pred             cceEEECCCccccceeeeeeccC-CCceEEEEEeeecC
Confidence            59999999999999999999775 78899999987543

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.34  E-value=0.00025  Score=65.57  Aligned_cols=38  Identities=29%  Similarity=0.428  Sum_probs=34.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ..++||+|||||.|||.||..+++.|.   +|.++||....
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~---~V~l~~K~~~~   41 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGL---KVALLSKAPPK   41 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCC---cEEEEEccccC
Confidence            456899999999999999999999997   99999997654

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.33  E-value=0.0044  Score=56.06  Aligned_cols=54  Identities=11%  Similarity=0.198  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEE-eCCCC--EEecCEEEEecCC
Q 021871          251 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTVILLPYD  305 (306)
Q Consensus       251 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~-~~~G~--~i~~d~vv~a~g~  305 (306)
                      +.+.+.+.+++ .||++++++.++.+.. +++++.+|. ..+|+  .+.++.||+|||-
T Consensus       130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG  187 (433)
T PRK06175        130 VEKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGG  187 (433)
T ss_pred             HHHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence            44555656654 5999999999999875 466666754 33454  5889999999984

>PRK13984 putative oxidoreductase; Provisional

Probab=97.32  E-value=0.00069  Score=64.00  Aligned_cols=89  Identities=20%  Similarity=0.179  Sum_probs=65.5

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+++++|||+|+.|+..|..|.+.+.+|+++.+.+.....        ..+..+.....+.+++.|++++.++.|.. + 
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~-  359 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK-D-  359 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC-c-
Confidence            4678999999999999999999999999999887754211        12344555556678889999999987732 1 


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                              +..++ ....+|.||+|||.
T Consensus       360 --------~~~~~-~~~~yD~vilAtGa  378 (604)
T PRK13984        360 --------IPLEE-LREKHDAVFLSTGF  378 (604)
T ss_pred             --------CCHHH-HHhcCCEEEEEcCc
Confidence                    11111 13579999999994

>PLN02785 Protein HOTHEAD

Probab=97.32  E-value=0.0004  Score=64.91  Aligned_cols=35  Identities=20%  Similarity=0.454  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|++|||||.+|+.+|.+|.+ +.   +|+|+|++..
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~---~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NF---SVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CC---cEEEEecCCC
Confidence            46999999999999999999999 45   9999999853

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.29  E-value=0.0058  Score=55.39  Aligned_cols=97  Identities=21%  Similarity=0.284  Sum_probs=69.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHh----CCCcEEEEecCC--ccc--------------------------------cc-----
Q 021871          209 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPEN--HLL--------------------------------QR-----  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~----~~~~v~~~~~~~--~~~--------------------------------~~-----  245 (306)
                      .|+|||+|+.|.-+|..|++    .+.+|+++++.+  ...                                ..     
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~   81 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR   81 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence            48999999999999999998    788999998832  100                                00     


Q ss_pred             --------------------------------ccCHHHHHHHHHHHHHcC---CEEEcCceEEEEEeC-----CCCcEEE
Q 021871          246 --------------------------------LFTPSLAQRYEQLYQQNG---VKFVKGASIKNLEAG-----SDGRVAA  285 (306)
Q Consensus       246 --------------------------------~~~~~~~~~~~~~~~~~g---v~i~~~~~v~~i~~~-----~~~~v~~  285 (306)
                                                      .....+...+.+.+++.+   ++++.+++|++++..     +++..+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~  161 (437)
T TIGR01989        82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH  161 (437)
T ss_pred             CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence                                            001123444566666654   999999999999742     1222236


Q ss_pred             EEeCCCCEEecCEEEEecCC
Q 021871          286 VKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       286 v~~~~G~~i~~d~vv~a~g~  305 (306)
                      |++.+|+++.+|.||-|-|.
T Consensus       162 v~~~~g~~i~a~llVgADG~  181 (437)
T TIGR01989       162 ITLSDGQVLYTKLLIGADGS  181 (437)
T ss_pred             EEEcCCCEEEeeEEEEecCC
Confidence            88899999999999999875

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK11445 putative oxidoreductase; Provisional

Probab=97.28  E-value=0.0086  Score=52.61  Aligned_cols=93  Identities=17%  Similarity=0.171  Sum_probs=64.8

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc--------ccccC--------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFT--------------------------------  248 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~--------~~~~~--------------------------------  248 (306)
                      .|+|||+|+.|.-+|..|++. .+|+++++.+...        ...+.                                
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~   81 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL   81 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence            589999999999999999998 8999999875320        00000                                


Q ss_pred             -----------------HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe-CCCC--EEecCEEEEecCC
Q 021871          249 -----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       249 -----------------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~-~~G~--~i~~d~vv~a~g~  305 (306)
                                       ..+...+.+ ..+.|++++.++.+++++..+++ + .|.+ .+|+  ++.+|.||.|+|.
T Consensus        82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~~g~~~~i~a~~vV~AdG~  155 (351)
T PRK11445         82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDG-Y-HVIFRADGWEQHITARYLVGADGA  155 (351)
T ss_pred             cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCE-E-EEEEecCCcEEEEEeCEEEECCCC
Confidence                             001112222 23568999999999999874444 3 3554 5664  6899999999986

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.28  E-value=0.006  Score=54.44  Aligned_cols=97  Identities=18%  Similarity=0.202  Sum_probs=68.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc------ccc------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------LQR------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~------~~~------------------------------------  245 (306)
                      .+|+|||+|..|.-+|..|++.|.+|+++++.+..      ...                                    
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ   82 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence            57999999999999999999999999999987631      000                                    


Q ss_pred             ----------------cc-CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-CCC--EEecCEEEEecCC
Q 021871          246 ----------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTVILLPYD  305 (306)
Q Consensus       246 ----------------~~-~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-~G~--~i~~d~vv~a~g~  305 (306)
                                      .. .+.+...+.+.+.+.|++++.+..++.+...++..+ .|.+. +|+  ++++|.||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~V~~~~~g~~~~i~adlvIGADG~  161 (390)
T TIGR02360        83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRP-YVTFERDGERHRLDCDFIAGCDGF  161 (390)
T ss_pred             EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCcc-EEEEEECCeEEEEEeCEEEECCCC
Confidence                            00 012334455666677899999988877754222222 46664 675  6899999998875

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.27  E-value=0.0003  Score=69.31  Aligned_cols=36  Identities=31%  Similarity=0.510  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+||+|||||.|||.||..+++.|.   +|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~---~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGA---NVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccc
Confidence            35799999999999999999999998   9999999764

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.24  E-value=0.0022  Score=59.70  Aligned_cols=94  Identities=18%  Similarity=0.363  Sum_probs=70.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCccc------ccccCH-----HHHHHHHHHHHHcCCEEEcCceEE
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLL------QRLFTP-----SLAQRYEQLYQQNGVKFVKGASIK  273 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~---~~~v~~~~~~~~~~------~~~~~~-----~~~~~~~~~~~~~gv~i~~~~~v~  273 (306)
                      .+++|||.|..|.....++.+.   ..++|++...++.-      .+.+++     ++.-.-.+.++++||+++.+.+|.
T Consensus         4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~   83 (793)
T COG1251           4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI   83 (793)
T ss_pred             eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence            5789999999999988888874   34677776655432      111111     222223567889999999999999


Q ss_pred             EEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          274 NLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       274 ~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .|..  +.+  .|.+++|.++.+|.+|+|||.
T Consensus        84 ~idr--~~k--~V~t~~g~~~~YDkLilATGS  111 (793)
T COG1251          84 QIDR--ANK--VVTTDAGRTVSYDKLIIATGS  111 (793)
T ss_pred             Eecc--Ccc--eEEccCCcEeecceeEEecCc
Confidence            9995  444  488999999999999999996

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.24  E-value=0.00047  Score=58.13  Aligned_cols=37  Identities=27%  Similarity=0.411  Sum_probs=33.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +...||+|||+|.+||.+|.+|++.|+   +|+++|++..
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~---~V~ildQEge   39 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGK---RVLILDQEGE   39 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCc---eEEEEccccc
Confidence            345899999999999999999999998   9999998754

>PLN02976 amine oxidase

Probab=97.22  E-value=0.00049  Score=68.95  Aligned_cols=37  Identities=22%  Similarity=0.423  Sum_probs=33.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      .++|+|||||++|+++|++|.+.|+   +|+|+|+++..+
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~---~V~VlEa~~~vG  729 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGF---SVTVLEARSRIG  729 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCC---cEEEEeeccCCC
Confidence            5799999999999999999999998   999999986653

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.20  E-value=0.0021  Score=58.95  Aligned_cols=74  Identities=22%  Similarity=0.235  Sum_probs=56.2

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~  285 (306)
                      .+++++|+|+|.+|+++|..|.+.|.+|+++.+.+.        .....+.+.+++.||+++.+..+. .          
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~-~----------   75 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT-L----------   75 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc-c----------
Confidence            467899999999999999999999999999986532        233445667888899998876443 0          


Q ss_pred             EEeCCCCEEecCEEEEecCC
Q 021871          286 VKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       286 v~~~~G~~i~~d~vv~a~g~  305 (306)
                             ...+|.||.++|.
T Consensus        76 -------~~~~D~Vv~s~Gi   88 (480)
T PRK01438         76 -------PEDTDLVVTSPGW   88 (480)
T ss_pred             -------cCCCCEEEECCCc
Confidence                   1347777777764

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.19  E-value=0.01  Score=53.07  Aligned_cols=95  Identities=21%  Similarity=0.285  Sum_probs=63.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc---c------------------------------cc---------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---Q------------------------------RL---------  246 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~---~------------------------------~~---------  246 (306)
                      +|+|||+|+.|.-.|..+++.|.+|.++++.....   .                              ..         
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~   81 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL   81 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence            58999999999999999999999999998764310   0                              00         


Q ss_pred             --------cC-HHHHHHHHHHHHHcCCEEEcCceEEEEEeC--CCCcEEEEEe--CC-----C--CEEecCEEEEecCC
Q 021871          247 --------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAG--SDGRVAAVKL--ED-----G--STIDADTVILLPYD  305 (306)
Q Consensus       247 --------~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~v~~v~~--~~-----G--~~i~~d~vv~a~g~  305 (306)
                              ++ ..+...+.+.+.+.|++++.++ +..++..  .++.+ .|+.  .+     |  .++++|.||-|+|.
T Consensus        82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~-~v~~~~~~~~~~~g~~~~i~a~~VIgADG~  158 (398)
T TIGR02028        82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPY-TLHYISSDSGGPSGTRCTLEVDAVIGADGA  158 (398)
T ss_pred             CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceE-EEEEeeccccccCCCccEEEeCEEEECCCc
Confidence                    00 1223346666778899998885 6666421  12222 3432  22     3  37999999999985

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.17  E-value=0.0015  Score=59.03  Aligned_cols=89  Identities=13%  Similarity=0.164  Sum_probs=60.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHH-hCCCcEEEEecCCcccccc---cC------HHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQRL---FT------PSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~-~~~~~v~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      .+++|+|||+|+.|+..|..+. ..+.+|+++.+.+.+.+-.   ..      ..+...+.+.+...+++++.+..|.. 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~-  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV-  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence            4789999999999999999765 5788999999998865311   11      23445556666677888875443321 


Q ss_pred             EeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          276 EAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                          +     +..+ .-...+|.||+|+|.
T Consensus       117 ----D-----vt~e-eL~~~YDAVIlAtGA  136 (506)
T PTZ00188        117 ----D-----LKME-ELRNHYNCVIFCCGA  136 (506)
T ss_pred             ----c-----cCHH-HHHhcCCEEEEEcCC
Confidence                0     1111 112368999999985

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.16  E-value=0.0025  Score=55.43  Aligned_cols=56  Identities=21%  Similarity=0.398  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.++++|++++.+++|+++.. .++.+..|.+.+| .+.+|.||+|+|.
T Consensus       136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~  191 (337)
T TIGR02352       136 PRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGA  191 (337)
T ss_pred             hHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCCh
Confidence            678888899999999999999999999996 5666767888887 8999999999984

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.13  E-value=0.0088  Score=56.19  Aligned_cols=54  Identities=17%  Similarity=0.241  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEE---eCCCC--EEecCEEEEecCC
Q 021871          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTVILLPYD  305 (306)
Q Consensus       251 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~---~~~G~--~i~~d~vv~a~g~  305 (306)
                      +...+.+.+++.||+++.++.+.++.. +++++.++.   +.+|+  .+.++.||+|||-
T Consensus       137 i~~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG  195 (575)
T PRK05945        137 ILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGG  195 (575)
T ss_pred             HHHHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence            344566667778999999999999875 467766665   34564  5889999999984

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.12  E-value=0.0027  Score=52.18  Aligned_cols=92  Identities=18%  Similarity=0.278  Sum_probs=67.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccccc-----------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF-----------------------------------------  247 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~-----------------------------------------  247 (306)
                      .|+|||+|..|+-.|..|+..+..|+++.++..+..+..                                         
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            589999999999999999999999999999876542210                                         


Q ss_pred             ---------------------CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-CEEecCEEEEecC
Q 021871          248 ---------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTVILLPY  304 (306)
Q Consensus       248 ---------------------~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~i~~d~vv~a~g  304 (306)
                                           .+.+. .+.+ +-....+|.++++|+.+..+ ++-+ .+.+++| +...+|.||++.|
T Consensus        83 ~~~~~~~~~~~~~~d~~pyvg~pgms-alak-~LAtdL~V~~~~rVt~v~~~-~~~W-~l~~~~g~~~~~~d~vvla~P  157 (331)
T COG3380          83 AVWTFTGDGSPPRGDEDPYVGEPGMS-ALAK-FLATDLTVVLETRVTEVART-DNDW-TLHTDDGTRHTQFDDVVLAIP  157 (331)
T ss_pred             cccccccCCCCCCCCCCccccCcchH-HHHH-HHhccchhhhhhhhhhheec-CCee-EEEecCCCcccccceEEEecC
Confidence                                 01122 2223 22345678889999999985 6666 5888666 4678999999876

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.09  E-value=0.0022  Score=60.15  Aligned_cols=89  Identities=21%  Similarity=0.203  Sum_probs=63.1

Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceE-EEE
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASI-KNL  275 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v-~~i  275 (306)
                      ..+++|+|||+|+.|+-.|..++..+.+|+++.+.+.+...        .++.++.+.-.+.+.+.|+++..++.+ ..+
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~  214 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI  214 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence            35789999999999999999999999999999887654321        123344444555677889999988765 333


Q ss_pred             EeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          276 EAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ...      .  +.    ..+|.||+|+|.
T Consensus       215 ~~~------~--~~----~~~D~Vi~AtG~  232 (564)
T PRK12771        215 TLE------Q--LE----GEFDAVFVAIGA  232 (564)
T ss_pred             CHH------H--HH----hhCCEEEEeeCC
Confidence            210      0  11    237999999885

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.09  E-value=0.0015  Score=57.82  Aligned_cols=36  Identities=25%  Similarity=0.430  Sum_probs=30.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ...+||||||||.||..||...++.|-   +.+++..+-
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga---~TlLlT~~l   61 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGA---RTLLLTHNL   61 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCC---ceEEeeccc
Confidence            457999999999999999999999997   777776653

>PLN02985 squalene monooxygenase

Probab=97.08  E-value=0.012  Score=54.32  Aligned_cols=97  Identities=21%  Similarity=0.208  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-------------------------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------------  243 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-------------------------------------------  243 (306)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+...                                           
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~  122 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK  122 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence            3469999999999999999999999999998763210                                           


Q ss_pred             ------c-------------cccCHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEe--CCCCE--EecCEE
Q 021871          244 ------Q-------------RLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKL--EDGST--IDADTV  299 (306)
Q Consensus       244 ------~-------------~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~--~~G~~--i~~d~v  299 (306)
                            +             ......+...+.+.+++. ||++..+ +++++.. +++.+.+|+.  .+|++  +.+|.|
T Consensus       123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~-~~~~v~gV~~~~~dG~~~~~~AdLV  200 (514)
T PLN02985        123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE-EKGVIKGVTYKNSAGEETTALAPLT  200 (514)
T ss_pred             EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE-cCCEEEEEEEEcCCCCEEEEECCEE
Confidence                  0             000123445556666554 7998876 4666654 4555545654  46654  568999


Q ss_pred             EEecCC
Q 021871          300 ILLPYD  305 (306)
Q Consensus       300 v~a~g~  305 (306)
                      |.|.|.
T Consensus       201 VgADG~  206 (514)
T PLN02985        201 VVCDGC  206 (514)
T ss_pred             EECCCC
Confidence            999885

>TIGR01810 betA choline dehydrogenase

Probab=97.06  E-value=0.00053  Score=63.75  Aligned_cols=50  Identities=16%  Similarity=0.223  Sum_probs=38.1

Q ss_pred             HHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-C---EEecCEEEEecCC
Q 021871          255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-S---TIDADTVILLPYD  305 (306)
Q Consensus       255 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~---~i~~d~vv~a~g~  305 (306)
                      +....++.|++|+.++.|.+|.. +++++++|+..++ +   .+.++.||+|.|-
T Consensus       200 l~~a~~r~nl~i~~~~~V~rI~~-~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGa  253 (532)
T TIGR01810       200 LHPAMKRPNLEVQTRAFVTKINF-EGNRATGVEFKKGGRKEHTEANKEVILSAGA  253 (532)
T ss_pred             hhhhccCCCeEEEeCCEEEEEEe-cCCeEEEEEEEeCCcEEEEEEeeeEEEccCC
Confidence            44444466899999999999997 4678888887544 2   3589999999884

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.02  E-value=0.018  Score=52.28  Aligned_cols=97  Identities=21%  Similarity=0.265  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc---cc------------------------------cc-------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---LQ------------------------------RL-------  246 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~---~~------------------------------~~-------  246 (306)
                      .-.|+|||+|+.|.-.|..|++.|.+|.++++....   +.                              ..       
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~  118 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK  118 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence            346999999999999999999999999999876421   00                              00       


Q ss_pred             ----------cC-HHHHHHHHHHHHHcCCEEEcCceEEEEEeCC--CCcEEEEEeCC-------C--CEEecCEEEEecC
Q 021871          247 ----------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLED-------G--STIDADTVILLPY  304 (306)
Q Consensus       247 ----------~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~v~~v~~~~-------G--~~i~~d~vv~a~g  304 (306)
                                ++ ..+...+.+.+.+.|++++.+ .+++++..+  ++.+ .|++.+       |  .++.+|.||-|.|
T Consensus       119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~-~v~~~~~~~~~~~g~~~~v~a~~VIgADG  196 (450)
T PLN00093        119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPY-VIHYTSYDSGSGAGTPKTLEVDAVIGADG  196 (450)
T ss_pred             cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcE-EEEEEeccccccCCCccEEEeCEEEEcCC
Confidence                      00 123345666677889999876 577776321  2332 344321       3  4799999999998


Q ss_pred             C
Q 021871          305 D  305 (306)
Q Consensus       305 ~  305 (306)
                      .
T Consensus       197 ~  197 (450)
T PLN00093        197 A  197 (450)
T ss_pred             c
Confidence            5

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.01  E-value=0.0021  Score=56.96  Aligned_cols=71  Identities=20%  Similarity=0.397  Sum_probs=57.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc------cCHH------HHHHHHHHHHHcCCEEEcCceEEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPS------LAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~------~~~~------~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      .++++|||+|..|++.|..|++.|.+++++.+.+.+.+++      ++..      +.-.+.+.-...++++++.++|++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e  203 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE  203 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence            5689999999999999999999999999999999887652      1111      223455556667999999999999


Q ss_pred             EEe
Q 021871          275 LEA  277 (306)
Q Consensus       275 i~~  277 (306)
                      |.-
T Consensus       204 v~G  206 (622)
T COG1148         204 VSG  206 (622)
T ss_pred             ecc
Confidence            985

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.00  E-value=0.00079  Score=62.49  Aligned_cols=37  Identities=22%  Similarity=0.427  Sum_probs=33.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...+|+||||+|.+|..+|.+|.+.++   +|+|+|....
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~---~VllLEaG~~   41 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGL---SVLVLEAGGP   41 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCC---eEEEEeCCCC
Confidence            456899999999999999999998787   9999999854

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.93  E-value=0.017  Score=54.83  Aligned_cols=41  Identities=27%  Similarity=0.360  Sum_probs=32.4

Q ss_pred             CEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          264 VKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       264 v~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      |+++.++.++++.. +++++.++..   .+|+  .+.++.||+|||-
T Consensus       166 v~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG  211 (626)
T PRK07803        166 IKVFAECTITELLK-DGGRIAGAFGYWRESGRFVLFEAPAVVLATGG  211 (626)
T ss_pred             eEEEeCCEEEEEEE-ECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence            99999999999875 4677767653   3554  5789999999994

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=96.93  E-value=0.0028  Score=61.56  Aligned_cols=89  Identities=22%  Similarity=0.313  Sum_probs=65.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc--------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+++|+|||+|+.|+..|.+|.+.|-.|++..|.++...-.        .+..+.+.-.+.+...||+++++++|-+-- 
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v- 1862 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV- 1862 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc-
Confidence            58899999999999999999999999999999998865321        233344445566788899999998774321 


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                               .+ |+-.-+.|.||+|+|.
T Consensus      1863 ---------s~-d~l~~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1863 ---------SL-DELKKENDAIVLATGS 1880 (2142)
T ss_pred             ---------cH-HHHhhccCeEEEEeCC
Confidence                     11 1223456778888774

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.85  E-value=0.0023  Score=57.09  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=31.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      +|+|||+|..|++.|..|++.|.+|+++.+.+..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            6899999999999999999999999999976654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK07395 L-aspartate oxidase; Provisional

Probab=96.80  E-value=0.013  Score=54.66  Aligned_cols=55  Identities=20%  Similarity=0.234  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHH-cCCEEEcCceEEEEEeCC-CCcEEEEEeC-CCC--EEecCEEEEecCC
Q 021871          251 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGS-DGRVAAVKLE-DGS--TIDADTVILLPYD  305 (306)
Q Consensus       251 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~-~~~v~~v~~~-~G~--~i~~d~vv~a~g~  305 (306)
                      +...+.+.+++ .||+++.++.+.++..++ ++++.+|... +|.  .+.++.||+|||-
T Consensus       136 i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG  195 (553)
T PRK07395        136 IVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG  195 (553)
T ss_pred             HHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence            44455555554 489999999999986533 3777777653 443  3789999999994

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=96.76  E-value=0.0025  Score=55.47  Aligned_cols=102  Identities=19%  Similarity=0.249  Sum_probs=68.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCC-CCCcE-EEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCCh
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGM-ADGRL-CIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~-~~~~V-~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (306)
                      .+..|.|||.|+-|-..|+.|.+.-. ...+| .|++-.    +....+              +|++       +.+...
T Consensus       346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek----~nm~ki--------------LPey-------ls~wt~  400 (659)
T KOG1346|consen  346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK----YNMEKI--------------LPEY-------LSQWTI  400 (659)
T ss_pred             hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc----CChhhh--------------hHHH-------HHHHHH
Confidence            35789999999999999999987522 12233 222211    010111              1110       012333


Q ss_pred             hHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       128 ~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ..+++.|++++-+..|.++.....  .+.++||..++.|.+|+|+|..|+.
T Consensus       401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~  451 (659)
T KOG1346|consen  401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS  451 (659)
T ss_pred             HHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence            446678999999988888876533  6788999999999999999999874

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.74  E-value=0.021  Score=51.01  Aligned_cols=97  Identities=23%  Similarity=0.310  Sum_probs=60.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCC---CcEEEEecCCccccc---------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQR---------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~---~~v~~~~~~~~~~~~---------------------------------------  245 (306)
                      .+|+|||+|.+|+.+|..|.+..   ..+.++.+.+.+..+                                       
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            47999999999999999998752   227777776654311                                       


Q ss_pred             -------------------ccCHHHHHHHHHHHHHcC---CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEec
Q 021871          246 -------------------LFTPSLAQRYEQLYQQNG---VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP  303 (306)
Q Consensus       246 -------------------~~~~~~~~~~~~~~~~~g---v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~  303 (306)
                                         .+...+.+.+...++..-   +.++. ++.+++...+++....+...+|....+|.+|+||
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                               001112233333333222   44443 3455555433444446888999889999999999


Q ss_pred             CC
Q 021871          304 YD  305 (306)
Q Consensus       304 g~  305 (306)
                      |.
T Consensus       161 gh  162 (474)
T COG4529         161 GH  162 (474)
T ss_pred             cC
Confidence            85

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.74  E-value=0.014  Score=51.34  Aligned_cols=81  Identities=20%  Similarity=0.277  Sum_probs=58.7

Q ss_pred             HHHHHHHHhCCCcEEEEecCCcccc-cccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-CEEecC
Q 021871          220 MEVAAAAVGWKLDTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDAD  297 (306)
Q Consensus       220 ~e~a~~l~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~i~~d  297 (306)
                      -|+...+.+.|.... ..++.++.| ..-..++.+.+.+.+++.||+++++++|++|+  +++ . .+.+.++ +.+.+|
T Consensus        57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~-~-~v~~~~~~~~~~a~  131 (376)
T TIGR03862        57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT-L-RFETPDGQSTIEAD  131 (376)
T ss_pred             HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc-E-EEEECCCceEEecC
Confidence            456666777664433 445556655 22356889999999999999999999999994  333 3 5666543 469999


Q ss_pred             EEEEecCC
Q 021871          298 TVILLPYD  305 (306)
Q Consensus       298 ~vv~a~g~  305 (306)
                      .||+|||.
T Consensus       132 ~vIlAtGG  139 (376)
T TIGR03862       132 AVVLALGG  139 (376)
T ss_pred             EEEEcCCC
Confidence            99999995

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.65  E-value=0.037  Score=52.16  Aligned_cols=42  Identities=17%  Similarity=0.158  Sum_probs=32.2

Q ss_pred             CEEEcCceEEEEEeCCCCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871          264 VKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTVILLPYD  305 (306)
Q Consensus       264 v~i~~~~~v~~i~~~~~~~v~~v~~~---~G~--~i~~d~vv~a~g~  305 (306)
                      |+++.++.+..+...++|++.+|...   +|+  .+.++.||+|||-
T Consensus       152 i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  198 (589)
T PRK08641        152 VTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGG  198 (589)
T ss_pred             cEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence            78888888888765457888888764   343  4789999999984

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=96.59  E-value=0.044  Score=52.26  Aligned_cols=50  Identities=12%  Similarity=0.042  Sum_probs=38.3

Q ss_pred             HHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       255 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      +.+.+.+.||+++.++.+.++.. +++++.++..   .+|+  .+.++.||+|||-
T Consensus       164 L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG  218 (657)
T PRK08626        164 VDNEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGG  218 (657)
T ss_pred             HHHHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence            34556678999999999999886 5677767655   3564  3679999999984

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.54  E-value=0.003  Score=53.74  Aligned_cols=100  Identities=21%  Similarity=0.266  Sum_probs=69.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      .++++++|||||..++..|--++-.|-   ++.++=+.+..           +..          |.++    ......+
T Consensus       187 e~Pkr~vvvGaGYIavE~Agi~~gLgs---ethlfiR~~kv-----------LR~----------FD~~----i~~~v~~  238 (478)
T KOG0405|consen  187 EQPKRVVVVGAGYIAVEFAGIFAGLGS---ETHLFIRQEKV-----------LRG----------FDEM----ISDLVTE  238 (478)
T ss_pred             hcCceEEEEccceEEEEhhhHHhhcCC---eeEEEEecchh-----------hcc----------hhHH----HHHHHHH
Confidence            457899999999999999999999986   55554443331           111          1111    0234556


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      .+...+++++.++.++.+.....   .+....+.....|.|+.|+|-.|+.
T Consensus       239 ~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pnt  289 (478)
T KOG0405|consen  239 HLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNT  289 (478)
T ss_pred             HhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCc
Confidence            67778999999998888865432   4555566555699999999988764

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=96.53  E-value=0.0013  Score=55.13  Aligned_cols=96  Identities=24%  Similarity=0.266  Sum_probs=58.5

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhC-C-CcEEEEecCCccc--cc--ccCHHHHHHH-----HHHHHHcCCEEEcCceEEE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGW-K-LDTTIIFPENHLL--QR--LFTPSLAQRY-----EQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~-~-~~v~~~~~~~~~~--~~--~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~  274 (306)
                      +.-+++|+|+|.-|+-+|..+.+. + .+|-++++.+...  |.  .....+...-     ...+--.|.+.+. ..|.+
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~  116 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKE  116 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHHHh
Confidence            456799999999999999988765 2 3566666654321  10  0111111100     0011112333333 46777


Q ss_pred             EEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          275 LEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       275 i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      +++. .+   .|.+.+|++|.+|.+|+|+|.|
T Consensus       117 f~P~-~N---~v~t~gg~eIsYdylviA~Giq  144 (446)
T KOG3851|consen  117 FNPD-KN---TVVTRGGEEISYDYLVIAMGIQ  144 (446)
T ss_pred             cCCC-cC---eEEccCCcEEeeeeEeeeeece
Confidence            7763 33   4778999999999999999975

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=96.51  E-value=0.0095  Score=52.95  Aligned_cols=55  Identities=18%  Similarity=0.157  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++ |++++.+++|.+++. +++.+ .|++.+|+.+.+|.||+|+|.
T Consensus       134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~-~~~~~-~v~t~~g~~~~a~~vV~a~G~  188 (381)
T TIGR03197       134 PPQLCRALLAHAGI-RLTLHFNTEITSLER-DGEGW-QLLDANGEVIAASVVVLANGA  188 (381)
T ss_pred             hHHHHHHHHhccCC-CcEEEeCCEEEEEEE-cCCeE-EEEeCCCCEEEcCEEEEcCCc
Confidence            56778888888888 999999999999986 34444 688899877999999999984

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=96.51  E-value=0.053  Score=50.98  Aligned_cols=52  Identities=25%  Similarity=0.227  Sum_probs=38.0

Q ss_pred             HHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          253 QRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       253 ~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ..+.+.+.+ .+|+++.++.++++.. +++++.++..   .+|+  .+.++.||+|||-
T Consensus       136 ~~L~~~~~~~~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  193 (580)
T TIGR01176       136 HTLFQTSLTYPQIMRYDEWFVTDLLV-DDGRVCGLVAIEMAEGRLVTILADAVVLATGG  193 (580)
T ss_pred             HHHHHHHHhcCCCEEEeCeEEEEEEe-eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence            344444444 4899999999999886 5677777653   4564  5789999999984

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.48  E-value=0.013  Score=51.98  Aligned_cols=97  Identities=26%  Similarity=0.322  Sum_probs=62.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc-cc-------------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-------------------------------------------  243 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~-~~-------------------------------------------  243 (306)
                      -.|+|||+|..|+|.|...++.|.+.+++...-. +.                                           
T Consensus        29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~LNr  108 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVLNR  108 (679)
T ss_pred             ccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHhhc
Confidence            3689999999999999999999988887765421 11                                           


Q ss_pred             ---ccccCHH-------HHHHHHHHHH-HcCCEEEcCceEEEEEeCCC----CcEEEEEeCCCCEEecCEEEEecCC
Q 021871          244 ---QRLFTPS-------LAQRYEQLYQ-QNGVKFVKGASIKNLEAGSD----GRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       244 ---~~~~~~~-------~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~----~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                         |..+.+.       +...+++.+. -.+.+|..+. |.++...+.    .++.+|.+.+|..+.++.||+.||.
T Consensus       109 s~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~-V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGT  184 (679)
T KOG2311|consen  109 SKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGA-VADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGT  184 (679)
T ss_pred             cCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhh-hhheeeccCCCCceEEEEEEEecCcEeccceEEEeecc
Confidence               1111110       1111222221 2356666663 544433222    2488999999999999999999984

>PLN02815 L-aspartate oxidase

Probab=96.47  E-value=0.036  Score=52.16  Aligned_cols=54  Identities=11%  Similarity=0.186  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHc-CCEEEcCceEEEEEeCCCC---cEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          252 AQRYEQLYQQN-GVKFVKGASIKNLEAGSDG---RVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       252 ~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~---~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ...+.+.+++. ||+++.++.++++..++++   ++.++..   .+|+  .+.++.||+|||-
T Consensus       158 ~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG  220 (594)
T PLN02815        158 ERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGG  220 (594)
T ss_pred             HHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCc
Confidence            34444555544 8999999999987743343   2667764   3554  4689999999984

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.47  E-value=0.062  Score=51.12  Aligned_cols=98  Identities=21%  Similarity=0.317  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCCcccc---------------------------------------c-
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ---------------------------------------R-  245 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~-~~~v~~~~~~~~~~~---------------------------------------~-  245 (306)
                      .-.|+|||+|+.|+-+|..|++. +.++.++.+.+....                                       . 
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~  111 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP  111 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence            35799999999999999999995 888888887654210                                       0 


Q ss_pred             ----c---------------------cC-HHHHHHHHHHHHHcC--CEEEcCceEEEEEeCCCC--cEEEEEeC------
Q 021871          246 ----L---------------------FT-PSLAQRYEQLYQQNG--VKFVKGASIKNLEAGSDG--RVAAVKLE------  289 (306)
Q Consensus       246 ----~---------------------~~-~~~~~~~~~~~~~~g--v~i~~~~~v~~i~~~~~~--~v~~v~~~------  289 (306)
                          .                     .+ ..+.+.+.+.+.+.+  +++..++++++++.++++  .| .|++.      
T Consensus       112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V-~v~l~~~~~~~  190 (634)
T PRK08294        112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPV-TVTLRRTDGEH  190 (634)
T ss_pred             ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCE-EEEEEECCCCC
Confidence                0                     00 013334555666655  578889999999864322  23 34443      


Q ss_pred             CC--CEEecCEEEEecCC
Q 021871          290 DG--STIDADTVILLPYD  305 (306)
Q Consensus       290 ~G--~~i~~d~vv~a~g~  305 (306)
                      +|  +++.+|+||-|=|.
T Consensus       191 ~g~~~tv~A~~lVGaDGa  208 (634)
T PRK08294        191 EGEEETVRAKYVVGCDGA  208 (634)
T ss_pred             CCceEEEEeCEEEECCCC
Confidence            35  47999999998774

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=96.46  E-value=0.054  Score=50.97  Aligned_cols=51  Identities=16%  Similarity=0.204  Sum_probs=37.2

Q ss_pred             HHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          254 RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       254 ~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      .+.+.+.+ .+|+++.++.++++.. +++++.+|..   .+|+  .+.++.||+|||-
T Consensus       138 ~L~~~~~~~~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG  194 (582)
T PRK09231        138 TLFQTSLKYPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGG  194 (582)
T ss_pred             HHHHHhhcCCCcEEEeCeEEEEEEE-eCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence            34444444 4899999999999886 5677766543   4664  6889999999984

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.44  E-value=0.0061  Score=59.43  Aligned_cols=34  Identities=18%  Similarity=0.109  Sum_probs=32.0

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      .+++|+|||+|+.|+..|..|+..|.+|+++.+.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            5789999999999999999999999999999875

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.43  E-value=0.042  Score=52.05  Aligned_cols=35  Identities=31%  Similarity=0.380  Sum_probs=32.0

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~  240 (306)
                      ...+|+|||+|..|.-+|..|++.+.+|+++++.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            46789999999999999999999999999998864

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.25  E-value=0.0053  Score=53.44  Aligned_cols=39  Identities=21%  Similarity=0.286  Sum_probs=31.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCC-CCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~-~~~~V~vie~~~   87 (306)
                      ...+||+|||||+.|++.|..|..... .+.+|.++|-.+
T Consensus        34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~   73 (481)
T KOG3855|consen   34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD   73 (481)
T ss_pred             cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence            347899999999999999999985422 356899999773

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.23  E-value=0.0069  Score=46.58  Aligned_cols=32  Identities=16%  Similarity=0.396  Sum_probs=29.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|+|||||..|.++|..|+++|+   +|+++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~---~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH---EVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE---EEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC---EEEEEeccH
Confidence            58999999999999999999998   999999875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.017  Score=49.26  Aligned_cols=99  Identities=28%  Similarity=0.343  Sum_probs=73.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEE-ecC----------Ccc--cccccCHHHHHHHHHHHHHcCCEEEcCceEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTII-FPE----------NHL--LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  273 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~-~~~----------~~~--~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~  273 (306)
                      +-.|+|+|+|+.+...|-+.++.|.+.=++ .|-          ..+  .+....+.+...+++..+...|+++...+.+
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~  290 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS  290 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence            446999999999998888888776543222 110          111  1222467899999999999999999988888


Q ss_pred             EEEeCC-CCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          274 NLEAGS-DGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       274 ~i~~~~-~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++++.. .+...+|++++|-.+.+..+|++||-
T Consensus       291 ~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA  323 (520)
T COG3634         291 KLEPAAVEGGLIEVELANGAVLKARTVILATGA  323 (520)
T ss_pred             cceecCCCCccEEEEecCCceeccceEEEecCc
Confidence            887522 23344899999999999999999984

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.19  E-value=0.0068  Score=49.54  Aligned_cols=34  Identities=21%  Similarity=0.501  Sum_probs=31.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++++|||+|..|.+.|..|.+.|+   +|+++|+++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~---~Vv~Id~d~~   34 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGH---NVVLIDRDEE   34 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCC---ceEEEEcCHH
Confidence            479999999999999999999999   9999998754

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.18  E-value=0.0061  Score=56.16  Aligned_cols=40  Identities=18%  Similarity=0.370  Sum_probs=34.5

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ....||.+|||||-||...|-+|.+.  ++.+|+++|+....
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn--~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSEN--PNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccC--CCceEEEEecCCCC
Confidence            34579999999999999999999987  35699999998664

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.12  E-value=0.042  Score=49.22  Aligned_cols=54  Identities=22%  Similarity=0.279  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHH-cCCEEEcCceEEEEEeCCCC-cEEEEEeCCC----CEEecCEEEEecCC
Q 021871          251 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDG-RVAAVKLEDG----STIDADTVILLPYD  305 (306)
Q Consensus       251 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~-~v~~v~~~~G----~~i~~d~vv~a~g~  305 (306)
                      +...+.+.+++ .+|+++.++.+..+-. +++ .+.+|.+.+.    ..+.++.||+|||-
T Consensus       135 I~~~L~~~v~~~p~I~v~e~~~a~~li~-~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG  194 (518)
T COG0029         135 IMTALLKKVRNRPNITVLEGAEALDLII-EDGIGVAGVLVLNRNGELGTFRAKAVVLATGG  194 (518)
T ss_pred             HHHHHHHHHhcCCCcEEEecchhhhhhh-cCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence            45556666665 6999999998888775 444 5547776433    36889999999984

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.10  E-value=0.011  Score=45.31  Aligned_cols=35  Identities=34%  Similarity=0.459  Sum_probs=31.2

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      .+.++|+|||||..|..-|..|.+.|.   +|+|++++
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga---~V~VIsp~   45 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGA---FVTVVSPE   45 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC---EEEEEcCc
Confidence            456899999999999999999999998   99999654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.09  E-value=0.011  Score=47.59  Aligned_cols=36  Identities=33%  Similarity=0.578  Sum_probs=32.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.++|+|||||.+|..-+..|.+.|-   +|+|++++..
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga---~VtVvsp~~~   43 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA---QLRVIAEELE   43 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC---EEEEEcCCCC
Confidence            45799999999999999999999997   9999998643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.09  E-value=0.014  Score=50.73  Aligned_cols=34  Identities=15%  Similarity=0.250  Sum_probs=31.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +++.|||.|..||+.|.-|++.|+   +|+.+|.++.
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GH---eVv~vDid~~   34 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGH---EVVCVDIDES   34 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCC---eEEEEeCCHH
Confidence            378999999999999999999999   9999998755

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.07  E-value=0.028  Score=54.71  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENH  241 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~--~~~v~~~~~~~~  241 (306)
                      +|+|||+|..|+-.|..|++.  +.+|+++++.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            689999999999999999987  789999998765

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=96.06  E-value=0.042  Score=47.66  Aligned_cols=82  Identities=21%  Similarity=0.312  Sum_probs=58.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc----cc----------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----LL----------------------------------------  243 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~----~~----------------------------------------  243 (306)
                      ..|.|||+|..|..+|..|++.|.+|++++|.=.    +.                                        
T Consensus        46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk~  125 (509)
T KOG1298|consen   46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGKE  125 (509)
T ss_pred             ccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCce
Confidence            3489999999999999999999999999998622    11                                        


Q ss_pred             ----------------ccccCHHHHHHHHHHH-HHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC
Q 021871          244 ----------------QRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG  291 (306)
Q Consensus       244 ----------------~~~~~~~~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G  291 (306)
                                      ..+....+...+.+.. ..-||++..++ |.++-+ ++|.|.+|+..+.
T Consensus       126 v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLle-e~gvvkGV~yk~k  188 (509)
T KOG1298|consen  126 VDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLE-EEGVVKGVTYKNK  188 (509)
T ss_pred             eeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHh-ccCeEEeEEEecC
Confidence                            0112233455555554 34589999885 666664 6778889888664

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=96.00  E-value=0.2  Score=47.45  Aligned_cols=48  Identities=17%  Similarity=0.083  Sum_probs=35.3

Q ss_pred             HHHHcCCEEEcCceEEEEEeCCC--CcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          258 LYQQNGVKFVKGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       258 ~~~~~gv~i~~~~~v~~i~~~~~--~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      .+++.+++++.++.++++..+++  |++.+|..   .+|+  .+.++.||+|||.
T Consensus       135 ~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG  189 (614)
T TIGR02061       135 AAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGG  189 (614)
T ss_pred             HHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCc
Confidence            34455678999999999875332  67878764   3554  4789999999985

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.98  E-value=0.0068  Score=42.95  Aligned_cols=36  Identities=31%  Similarity=0.581  Sum_probs=30.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+.++|+|||||..|..-+..|.+.|-   +|+|+.++.
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA---~v~vis~~~   40 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGA---KVTVISPEI   40 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTB---EEEEEESSE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC---EEEEECCch
Confidence            356899999999999999999999986   999999874

>PRK09077 L-aspartate oxidase; Provisional

Probab=95.97  E-value=0.16  Score=47.41  Aligned_cols=52  Identities=15%  Similarity=0.151  Sum_probs=36.9

Q ss_pred             HHHHHHHHc-CCEEEcCceEEEEEeCC-----CCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871          254 RYEQLYQQN-GVKFVKGASIKNLEAGS-----DGRVAAVKLE---DGS--TIDADTVILLPYD  305 (306)
Q Consensus       254 ~~~~~~~~~-gv~i~~~~~v~~i~~~~-----~~~v~~v~~~---~G~--~i~~d~vv~a~g~  305 (306)
                      .+.+.+.+. ||+++.++.++.+..++     ++++.+|...   +|+  .+.++.||+|||-
T Consensus       143 ~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG  205 (536)
T PRK09077        143 TLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGG  205 (536)
T ss_pred             HHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCC
Confidence            344445444 89999999988876432     3777787653   454  4789999999984

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.85  E-value=0.011  Score=53.85  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=31.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      +|+|||.|.+|+++|+.|.++|+   +|++.|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~---~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGW---EVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC---EEEEECCCCch
Confidence            58999999999999999999998   99999987653

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=95.85  E-value=0.023  Score=36.77  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=30.1

Q ss_pred             EEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc
Q 021871          212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  245 (306)
Q Consensus       212 viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~  245 (306)
                      |||+|.+|+-.|..|++.+.+|+++++++.+...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~   34 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR   34 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence            7999999999999999999999999999887643

...

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=95.84  E-value=0.013  Score=48.87  Aligned_cols=39  Identities=13%  Similarity=0.204  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcC----CCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHG----MADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g----~~~~~V~vie~~~~   88 (306)
                      ++.+|+|||+|..||+.|..+.+..    .|..+|+|++.+..
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~   44 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT   44 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence            4579999999999999999888843    46678999986543

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.72  E-value=0.02  Score=45.97  Aligned_cols=35  Identities=40%  Similarity=0.651  Sum_probs=31.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ...++|+|||||-.|...|..|.+.|.   +|+|++++
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga---~V~VIs~~   42 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGA---HIVVISPE   42 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEcCC
Confidence            346799999999999999999999997   99999875

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.63  E-value=0.014  Score=49.34  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...|.|||||.||-.||++++++|.   .|.+.|-++.
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv---~V~L~EMRp~   37 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGV---PVILYEMRPV   37 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCC---cEEEEEcccc
Confidence            4579999999999999999999999   8999997755

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.58  E-value=0.023  Score=50.91  Aligned_cols=52  Identities=29%  Similarity=0.345  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       252 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ...+.......|.+|+++++|++|+. +++++ .|.+.+|++++||.||+|+|.
T Consensus       212 ~~~~~~~~~~~g~~i~l~~~V~~I~~-~~~~v-~v~~~~g~~~~ad~VI~a~p~  263 (450)
T PF01593_consen  212 SLALALAAEELGGEIRLNTPVTRIER-EDGGV-TVTTEDGETIEADAVISAVPP  263 (450)
T ss_dssp             HHHHHHHHHHHGGGEESSEEEEEEEE-ESSEE-EEEETTSSEEEESEEEE-S-H
T ss_pred             hHHHHHHHhhcCceeecCCcceeccc-ccccc-ccccccceEEecceeeecCch
Confidence            34444555556779999999999997 45666 699999999999999999873

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.57  E-value=0.046  Score=47.71  Aligned_cols=97  Identities=19%  Similarity=0.248  Sum_probs=57.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCccc--ccc---------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLL--QRL---------------------------------------  246 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~~--~~~---------------------------------------  246 (306)
                      .++.||.|+..+-+|..+.+.+ .++.++.+.+.+.  +.+                                       
T Consensus         4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~   83 (341)
T PF13434_consen    4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE   83 (341)
T ss_dssp             SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred             eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence            4789999999999999998876 6788888776532  100                                       


Q ss_pred             ------c---CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCC--cEEEEEeC----CCCEEecCEEEEecCC
Q 021871          247 ------F---TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG--RVAAVKLE----DGSTIDADTVILLPYD  305 (306)
Q Consensus       247 ------~---~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~v~~v~~~----~G~~i~~d~vv~a~g~  305 (306)
                            +   -.++.+.+....++..-.+..+++|++|+..+++  ....|.+.    +++++.++.||++||.
T Consensus        84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~  157 (341)
T PF13434_consen   84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG  157 (341)
T ss_dssp             HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred             hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence                  0   0123334444444445448889999999975443  22356662    3468999999999985

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.55  E-value=0.019  Score=42.79  Aligned_cols=37  Identities=19%  Similarity=0.523  Sum_probs=32.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ..+|+|||+|-.|..+|..|++.|..  +++++|.+...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~--~i~lvD~d~v~   38 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVG--KITLVDDDIVE   38 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTS--EEEEEESSBB-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCC--ceeecCCccee
Confidence            36899999999999999999999985  89999987553

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.54  E-value=0.022  Score=51.82  Aligned_cols=35  Identities=14%  Similarity=0.351  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.++|+|+|+|..|+.+|..|++.|+   +|+++|+..
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~---~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA---KVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            45789999999999999999999998   999999874

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.52  E-value=0.031  Score=41.70  Aligned_cols=37  Identities=22%  Similarity=0.430  Sum_probs=32.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      -..++++|||+|-+|-.++++|.+.|..  +|+|+.|..
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~--~i~i~nRt~   46 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAK--EITIVNRTP   46 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSS--EEEEEESSH
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCC--EEEEEECCH
Confidence            3468999999999999999999999984  699998753

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=95.47  E-value=0.048  Score=48.93  Aligned_cols=52  Identities=25%  Similarity=0.421  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       252 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      .+.+.+.+++.|++|+++++|++|+..+++ +..+...+|+.+.+|.||+|++
T Consensus       200 ~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~~~~g~~~~~d~vi~a~p  251 (419)
T TIGR03467       200 PEPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALVLSGGETLPADAVVLAVP  251 (419)
T ss_pred             HHHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEEecCCccccCCEEEEcCC
Confidence            344777888889999999999999975444 3222234677899999999986

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.34  E-value=0.052  Score=43.57  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=30.4

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  238 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~  238 (306)
                      .+++++|||+|..|...+..|.+.+.+|+++.+
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            478999999999999999999999999999965

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.31  E-value=0.029  Score=44.18  Aligned_cols=33  Identities=15%  Similarity=0.343  Sum_probs=28.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +|.|||+|.-|...|..++..|+   +|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~---~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY---EVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS---EEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC---cEEEEECChH
Confidence            58999999999999999999999   9999998754

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.29  E-value=0.061  Score=40.12  Aligned_cols=34  Identities=35%  Similarity=0.407  Sum_probs=30.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPE  239 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~-v~~~~~~  239 (306)
                      .+++++|+|+|..|..++..|...+.+ ++++.|.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            478999999999999999999999866 9999885

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PTZ00367 squalene epoxidase; Provisional

Probab=95.20  E-value=0.28  Score=45.93  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~  240 (306)
                      -+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus        34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            469999999999999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	306
3lxd_A	415	Crystal Structure Of Ferredoxin Reductase Arr From		2e-23
3fg2_P	404	Crystal Structure Of Ferredoxin Reductase For The C		2e-21
3lb8_A	436	Crystal Structure Of The Covalent Putidaredoxin Red		2e-20
1q1r_A	431	Crystal Structure Of Putidaredoxin Reductase From P		2e-20
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		3e-17
1d7y_A	408	Crystal Structure Of Nadh-Dependent Ferredoxin Redu		8e-14
2gr3_A	408	Crystal Structure Of Ferredoxin Reductase, Bpha4 (O		9e-14
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		1e-11
2cdu_A	452	The Crystal Structure Of Water-Forming Nad(P)h Oxid		4e-08
1gv4_A	528	Murine Apoptosis-Inducing Factor (Aif) Length = 528		6e-08
3gd4_A	511	Crystal Structure Of The Reduced, Nad-Bound Form Of		7e-08
3gd3_A	535	Crystal Structure Of A Naturally Folded Murine Apop		8e-08
1m6i_A	493	Crystal Structure Of Apoptosis Inducing Factor (Aif		1e-07
4fdc_B	514	Crystal Structure Of The E493v Mutant Of Human Apop		1e-07
3cgc_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		3e-05
3klj_A	385	Crystal Structure Of Nadh:rubredoxin Oxidoreductase		9e-05
1xhc_A	367	Nadh Oxidase /nitrite Reductase From Pyrococcus Fur		1e-04

>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 18/259 (6%)
Query: 45  SSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 104
           S    E  + VIVG G+    AA    ++G  +GR+ ++ +E   PYERP L+K YL   
Sbjct: 3   SEVQAERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYL--- 58
Query: 105 DKKPARLPGFH-TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKY 163
               AR   F   C+      +  +++++K +EM     V S+D    T+    G  ++Y
Sbjct: 59  ----AREKTFERICI------RPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEY 108
Query: 164 GSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKXXXXXXXYIGMEV 222
           G LI ATG    R    +G  L GVH +R   DAD L++ L+  AK        YIG+E 
Sbjct: 109 GKLIWATGGDPRRL-SCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEA 167
Query: 223 AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282
           AA    + ++ T++     +L R+   +L++ Y+  ++ +GV    GA++  +E G   +
Sbjct: 168 AAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIE-GDGTK 226
Query: 283 VAAVKLEDGSTIDADTVIL 301
           V  V+++DGS I AD VI+
Sbjct: 227 VTGVRMQDGSVIPADIVIV 245

>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 25/252 (9%)
Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           V++ G   AG+     +      GR+ +++ E + PY+RP L+K YL             
Sbjct: 4   VLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYL------------- 50
Query: 115 HTCVGSGGERQT----PE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVA 169
                SGG+  +    PE +++++ IE+I  D + SID E + L+  SG  ++YG L++A
Sbjct: 51  ----KSGGDPNSLMFRPEKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLVLA 105
Query: 170 TGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGW 229
           TG   +R  +     LP V Y+R + +++ L   +   K        +IG+E AA A   
Sbjct: 106 TGAR-NRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAK 164
Query: 230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289
            L+  ++     ++ R+ TP ++  +   +   G++   G     + A  D RV  V L 
Sbjct: 165 GLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVVLS 223
Query: 290 DGSTIDADTVIL 301
           DG+T+  D V++
Sbjct: 224 DGNTLPCDLVVV 235

>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 117/255 (45%), Gaps = 16/255 (6%)
Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 1   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 55
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
           A     +         +TP+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 56  ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 107
Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 226
           ATG      P   G  G      Y+R + DA+ +   L    +       YIG+EVAA A
Sbjct: 108 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 167
Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAA 285
           +   +  T++     +L+R+  P ++  YE L+++ GV    G  +   E  +D  +V A
Sbjct: 168 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 227
Query: 286 VKLEDGSTIDADTVI 300
           V  EDG+ + AD VI
Sbjct: 228 VLCEDGTRLPADLVI 242

>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 117/255 (45%), Gaps = 16/255 (6%)
Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 2   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 56
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
           A     +         +TP+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 57  ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108
Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 226
           ATG      P   G  G      Y+R + DA+ +   L    +       YIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168
Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAA 285
           +   +  T++     +L+R+  P ++  YE L+++ GV    G  +   E  +D  +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228
Query: 286 VKLEDGSTIDADTVI 300
           V  EDG+ + AD VI
Sbjct: 229 VLCEDGTRLPADLVI 243

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 21/255 (8%)
Query: 56  IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFH 115
           I+G G      A+     G  +GR+ ++  E + PY+RP+L+K  L    ++P  L    
Sbjct: 7   IIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL---- 61
Query: 116 TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175
                       +WY E  I+M+    VT++D++ +T+  + G  L   ++++ATG  A 
Sbjct: 62  ---------AEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA- 111
Query: 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTI 235
           R     G  LPGV  +R   D   L  S   A +        IG EVA  A    L  TI
Sbjct: 112 RTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTI 171
Query: 236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 295
           +   + LL R+    +      L  + GV+   G  +       +G++  V   DG +  
Sbjct: 172 LEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFV 229
Query: 296 ADTVILL----PYDQ 306
           AD+ ++     P DQ
Sbjct: 230 ADSALICVGAEPADQ 244

>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 28/243 (11%)
Query: 63  AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 119
           AG A+ +FV         G + +V  EA  PY+RP L+K ++   D +  RL     C  
Sbjct: 15  AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 179
               ++ PE      +E +      S D +  T+  + G+ L YG+L++ATG      P 
Sbjct: 69  ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 239
             G  +P VH +R + DA  + + L    +        IG+E+AA A    +  +++  +
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADT 298
             L+ R    +LA    + +   GV           E    G V   V L+DG+ I AD 
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADM 230
Query: 299 VIL 301
           V++
Sbjct: 231 VVV 233

>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 28/243 (11%)
Query: 63  AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 119
           AG A+ +FV         G + +V  EA  PY+RP L+K ++   D +  RL     C  
Sbjct: 15  AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 179
               ++ PE      +E +      S D +  T+  + G+ L YG+L++ATG      P 
Sbjct: 69  ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 239
             G  +P VH +R + DA  + + L    +        IG+E+AA A    +  +++  +
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADT 298
             L+ R    +LA    + +   GV           E    G V   V L+DG+ I AD 
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADM 230
Query: 299 VIL 301
           V++
Sbjct: 231 VVV 233

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 12/186 (6%)
Query: 125 QTPEWYK-EKGIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           + PE+++  K +E + +    +ID     +E + L T   + LKY  L++A G  A+R P
Sbjct: 70  RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAA-AVGWKLDTTI 235
            + G  L GV  + ++ +A+ +  ++   +  K       +IG+E+A + A  W +DTT+
Sbjct: 130 VE-GMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 295
           +   + ++    + SL+Q      ++N V    G  +  LE G +G+VA V + D  T+D
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 296 ADTVIL 301
           AD VIL
Sbjct: 247 ADLVIL 252

>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 18/186 (9%)
Query: 126 TPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEK 180
           +PE     G  +  +  VT++D E +T     LITN  K   Y  LI+ TG   +  P  
Sbjct: 64  SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP-- 121
Query: 181 IGGYLPG-----VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTI 235
               +PG     V+  ++  DA  L     KAK        YIG E+A A      +  +
Sbjct: 122 ----IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNL 177
Query: 236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 295
           I     +L + F         + Y+ +GV  V G+ +   E   D  +   K  DG  I 
Sbjct: 178 IDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIIT--KTLDGKEIK 235
Query: 296 ADTVIL 301
           +D  IL
Sbjct: 236 SDIAIL 241

>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 26/243 (10%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 75  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 132
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 133 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 192
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 237
            +       R + D  AL     + K        ++G E+ A A+G K     ++   +F
Sbjct: 193 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 251
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PE   + ++    L+    +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 252 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 309
Query: 298 TVI 300
            ++
Sbjct: 310 HIV 312

>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 26/243 (10%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 56  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 113
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 114 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 173
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 237
            +       R + D  AL     + K        ++G E+ A A+G K     ++   +F
Sbjct: 174 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 232
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PE   + ++    L+    +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 233 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 290
Query: 298 TVI 300
            ++
Sbjct: 291 HIV 293

>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 26/243 (10%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 80  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 137
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 138 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 197
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 237
            +       R + D  AL     + K        ++G E+ A A+G K     ++   +F
Sbjct: 198 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 256
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PE   + ++    L+    +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 257 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 314
Query: 298 TVI 300
            ++
Sbjct: 315 HIV 317

>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 106/243 (43%), Gaps = 26/243 (10%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 38  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 95
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + Y   ++ATG T       ++ G 
Sbjct: 96  DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 155
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 237
            +       R + D  +L     + K        ++G E+ A A+G K   L T +I  F
Sbjct: 156 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSEL-ACALGRKARALGTEVIQLF 214
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PE   + ++    L+    +  ++ GVK +  A ++++   S G++  +KL+DG  ++ D
Sbjct: 215 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS-GKL-LIKLKDGRKVETD 272
Query: 298 TVI 300
            ++
Sbjct: 273 HIV 275

>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 106/243 (43%), Gaps = 26/243 (10%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 56  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 113
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + Y   ++ATG T       ++ G 
Sbjct: 114 DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 173
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 237
            +       R + D  +L     + K        ++G E+ A A+G K   L T +I  F
Sbjct: 174 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSEL-ACALGRKARALGTEVIQLF 232
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PE   + ++    L+    +  ++ GVK +  A ++++   S G++  +KL+DG  ++ D
Sbjct: 233 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKL-LIKLKDGRKVETD 290
Query: 298 TVI 300
            ++
Sbjct: 291 HIV 293

>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 109/260 (41%), Gaps = 34/260 (13%)
Query: 54  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE-----AYAPYERPALTKGYLFPLDKKP 108
           +VI+GG  A   AA   V +   D    +V+ E     +YA    P +  G +   +K  
Sbjct: 39  YVIIGGDAAGMSAAMQIVRN---DENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLI 95
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKY 163
           AR                  +  + GI+   +  VT +D EK+ +     K        Y
Sbjct: 96  AR--------------NVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSY 141
Query: 164 GSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGME 221
             L++ATG      PE  G  L GVH ++ + DA+ ++ +LE  K +         IG+E
Sbjct: 142 DRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLE 200
Query: 222 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 281
           +A   V       +I   +H +  ++   +A+   +   ++ ++ +   ++K  +     
Sbjct: 201 MAETFVELGKKVRMIERNDH-IGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNE-- 257
Query: 282 RVAAVKLEDGSTIDADTVIL 301
           RV AV+ + G T  AD V++
Sbjct: 258 RVEAVETDKG-TYKADLVLV 276

>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 53  EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
           + +I+G G A   AA+  +  G  D  + +++ E Y PY RP L +     +  K   + 
Sbjct: 11  KILILGAGPAGFSAAKAAL--GKCDD-ITMINSEKYLPYYRPRLNE-----IIAKNKSID 62
Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
                       +  +WY++  I++I  +  TSID   + +   SG+ +KY  LI+A+G 
Sbjct: 63  DILI--------KKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGS 114
Query: 173 TASRF 177
            A++ 
Sbjct: 115 IANKI 119

>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 187
           +WY+++GIE+   +    ID  ++ +IT  G+ + Y +L++ATG  A R P+     + G
Sbjct: 68  DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATGARA-REPQ-----IKG 120
Query: 188 VHY---IRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
             Y   +R + DAD +  S+E + +       +IG+E+A           +I      L 
Sbjct: 121 KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG 180
Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 281
                 L+   + + ++ GVKF   + +  LEA  +G
Sbjct: 181 --LDEELSNMIKDMLEETGVKFFLNSEL--LEANEEG 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	306
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	1e-75
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	5e-71
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	2e-70
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	3e-70
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	8e-70
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	4e-68
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	5e-54
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	2e-47
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	7e-43
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	8e-39
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	5e-38
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	2e-36
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	2e-35
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	1e-34
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	4e-33
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	4e-33
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	7e-33
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	4e-31
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	3e-30
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	1e-18
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	5e-06
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	8e-17
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	1e-16
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-16
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	6e-04
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	2e-16
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	3e-16
1fec_A	490	Trypanothione reductase; redox-active center, oxid	7e-16
4dna_A	463	Probable glutathione reductase; structural genomic	8e-16
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	1e-15
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	8e-06
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	2e-15
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	3e-14
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	1e-12
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	1e-12
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	8e-12
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	1e-11
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	2e-11
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	2e-10
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	3e-10
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	3e-10
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	3e-09
4fk1_A	304	Putative thioredoxin reductase; structural genomic	8e-09
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	1e-08
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	2e-07
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	3e-07
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	6e-07
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	9e-07
1ojt_A	482	Surface protein; redox-active center, glycolysis,	1e-06
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	1e-06
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	1e-06
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	2e-06
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	2e-06
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	3e-06
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	3e-06
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	3e-06
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	4e-06
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	4e-06
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	8e-06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	9e-06
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-05
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	2e-05
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	2e-05
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	2e-04
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	3e-04
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	4e-04

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score =  238 bits (609), Expect = 1e-75
 Identities = 62/271 (22%), Positives = 115/271 (42%), Gaps = 25/271 (9%)

Query: 50  ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPA 109
            +  F+++GGG AA  AAR+         R+ IVS++   PY RP L+K         P 
Sbjct: 10  SHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELW--FSDDPN 66

Query: 110 RLPGFHTCVGSGGER----QTPEWY---------KEKGIEMIYQDPVTSIDIEKQTLITN 156
                     +G ER    Q P +Y         +  G+ ++    V  +D+    +  N
Sbjct: 67  VTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN 126

Query: 157 SGKLLKYGSLIVATGCTASRFP--EKIGGYLPG-VHYIRDVADADALISSLEKAKKVVVV 213
            G  + Y   ++ATG T       ++ G  +       R + D  +L     + K + ++
Sbjct: 127 DGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITII 186

Query: 214 GGGYIGMEVAAA----AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG 269
           GGG++G E+A A    A     +   +FPE   + ++    L+    +  ++ GVK +  
Sbjct: 187 GGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPN 246

Query: 270 ASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300
           A ++++          +KL+DG  ++ D ++
Sbjct: 247 AIVQSVGV--SSGKLLIKLKDGRKVETDHIV 275

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score =  224 bits (574), Expect = 5e-71
 Identities = 78/255 (30%), Positives = 122/255 (47%), Gaps = 16/255 (6%)

Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL    K  
Sbjct: 2   NANDNVVIVGTGLAGVEVAFGLRASG-WEGNIRLVGDATVIPHHLPPLSKAYL--AGKAT 58

Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
           A      T          P+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 59  AESLYLRT----------PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108

Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 226
           ATG      P   G  G      Y+R + DA+ +   L    ++VV+GGGYIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168

Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE-AGSDGRVAA 285
           +   +  T++     +L+R+  P ++  YE L+++ GV    G  +   E +    +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228

Query: 286 VKLEDGSTIDADTVI 300
           V  EDG+ + AD VI
Sbjct: 229 VLCEDGTRLPADLVI 243

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score =  222 bits (568), Expect = 2e-70
 Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 16/250 (6%)

Query: 51  NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
           N   +I G G+A    A +  +     GR+ +++ E + PY+RP L+K YL         
Sbjct: 1   NDTVLIAGAGHAGFQVAVSLRQAK-YPGRIALINDEKHLPYQRPPLSKAYL--KSGGDPN 57

Query: 111 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 170
              F             ++++++ IE+I  D + SID E + L+  SG  ++YG L++AT
Sbjct: 58  SLMFRP----------EKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLVLAT 106

Query: 171 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230
           G             LP V Y+R + +++ L   +   K VVV+G G+IG+E AA A    
Sbjct: 107 GARNRMLDVP-NASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKG 165

Query: 231 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290
           L+  ++     ++ R+ TP ++  +   +   G++   G     +      RV  V L D
Sbjct: 166 LEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIA-AEGDRVTGVVLSD 224

Query: 291 GSTIDADTVI 300
           G+T+  D V+
Sbjct: 225 GNTLPCDLVV 234

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score =  222 bits (568), Expect = 3e-70
 Identities = 84/257 (32%), Positives = 133/257 (51%), Gaps = 16/257 (6%)

Query: 45  SSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 104
           S    E  + VIVG G+    AA    ++G  +GR+ ++ +E   PYERP L+K YL   
Sbjct: 3   SEVQAERADVVIVGAGHGGAQAAIALRQNG-FEGRVLVIGREPEIPYERPPLSKEYL--A 59

Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 164
            +K                    +++++K +EM     V S+D    T+    G  ++YG
Sbjct: 60  REKTFERICIRP----------AQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYG 109

Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGYIGMEVA 223
            LI ATG    R    +G  L GVH +R   DAD L++ L+  AK  VV+GGGYIG+E A
Sbjct: 110 KLIWATGGDPRRLSC-VGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAA 168

Query: 224 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 283
           A    + ++ T++     +L R+   +L++ Y+  ++ +GV    GA++  +E G   +V
Sbjct: 169 AVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIE-GDGTKV 227

Query: 284 AAVKLEDGSTIDADTVI 300
             V+++DGS I AD VI
Sbjct: 228 TGVRMQDGSVIPADIVI 244

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score =  221 bits (565), Expect = 8e-70
 Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 17/247 (6%)

Query: 54  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
             I+G G      A+     G  +GR+ ++  E + PY+RP+L+K  L    ++P  L  
Sbjct: 5   VAIIGNGVGGFTTAQALRAEG-FEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL-- 61

Query: 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
                         +WY E  I+M+    VT++D++ +T+  + G  L   ++++ATG  
Sbjct: 62  -----------AEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSR 110

Query: 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT 233
           A       G  LPGV  +R   D   L  S   A ++++VGGG IG EVA  A    L  
Sbjct: 111 ARTMALP-GSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSV 169

Query: 234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293
           TI+   + LL R+    +      L  + GV+   G  +       +G++  V   DG +
Sbjct: 170 TILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRS 227

Query: 294 IDADTVI 300
             AD+ +
Sbjct: 228 FVADSAL 234

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score =  216 bits (553), Expect = 4e-68
 Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 24/250 (9%)

Query: 51  NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
               V++G G A+        + G   G + +V  EA  PY+RP L+K ++         
Sbjct: 7   KAPVVVLGAGLASVSFVAELRQAG-YQGLITVVGDEAERPYDRPPLSKDFM--------- 56

Query: 111 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 170
                       E+   +  +   +E +      S D +  T+  + G+ L YG+L++AT
Sbjct: 57  -------AHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLAT 109

Query: 171 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230
           G      P  + G    VH +R + DA  + + L    ++++VGGG IG+E+AA A    
Sbjct: 110 GAAPRALPT-LQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAG 168

Query: 231 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290
           +  +++  +  L+ R    +LA    + +   GV      S+      +      V L+D
Sbjct: 169 VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSV------TGSVDGVVLLDD 222

Query: 291 GSTIDADTVI 300
           G+ I AD V+
Sbjct: 223 GTRIAADMVV 232

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score =  179 bits (457), Expect = 5e-54
 Identities = 54/253 (21%), Positives = 100/253 (39%), Gaps = 19/253 (7%)

Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           +E    VI+G G A    AR + +    +  L +++ +    Y +P L+ G+    +K  
Sbjct: 2   SERAPLVIIGTGLAGYNLAREWRKLD-GETPLLMITADDGRSYSKPMLSTGFS--KNKDA 58

Query: 109 ARLPGFHTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 167
             L               P    ++    ++    VT ID   Q +     ++ +Y  L+
Sbjct: 59  DGL-----------AMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEV-RYRDLV 106

Query: 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 227
           +A G    R P + G     ++ I D+ D      +    ++V+++G G IG E A    
Sbjct: 107 LAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLS 165

Query: 228 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 287
                  ++ P   ++  L  P+ A+  +   +  GV+F  G  + +L+    G      
Sbjct: 166 SGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKK--AGEGLEAH 223

Query: 288 LEDGSTIDADTVI 300
           L DG  I  D V+
Sbjct: 224 LSDGEVIPCDLVV 236

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score =  162 bits (412), Expect = 2e-47
 Identities = 51/254 (20%), Positives = 101/254 (39%), Gaps = 34/254 (13%)

Query: 48  ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK 107
            +++ + +I+G G A   AA+  +        + +++ E Y PY RP L    +   +K 
Sbjct: 6   HHKSTKILILGAGPAGFSAAKAALGK---CDDITMINSEKYLPYYRPRLN--EIIAKNKS 60

Query: 108 PARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 167
              +                +WY++  I++I  +  TSID   + +   SG+ +KY  LI
Sbjct: 61  IDDIL-IKK----------NDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLI 109

Query: 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 227
           +A+G  A++    +      +  +    DA  +    +   K  ++GGG +G+E+A A +
Sbjct: 110 IASGSIANKIK--VPH-ADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAII 166

Query: 228 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 287
                 +I     + L+R          +    + G+K    ++ +              
Sbjct: 167 DSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFE-------------- 212

Query: 288 LEDGSTIDADTVIL 301
            E G  I +  VI 
Sbjct: 213 -EMGDLIRSSCVIT 225

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score =  150 bits (380), Expect = 7e-43
 Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 30/247 (12%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           VIVG G      A+   +       + ++ KE    Y +P L+  +         RL   
Sbjct: 12  VIVGNGPGGFELAKQLSQ----TYEVTVIDKEPVPYYSKPMLS--HYIAGFIPRNRL--- 62

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
                      + +WY+++GIE+   +    ID  ++ +IT  G++  Y +L++ATG  A
Sbjct: 63  --------FPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEV-PYDTLVLATGARA 113

Query: 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 234
                 I G    +  +R + DAD +  S+E + + +++GGG+IG+E+A           
Sbjct: 114 REPQ--IKG-KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVK 170

Query: 235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI 294
           +I      L       L+   + + ++ GVKF   + +   EA  +G      L +   I
Sbjct: 171 LIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELL--EANEEGV-----LTNSGFI 221

Query: 295 DADTVIL 301
           +    I 
Sbjct: 222 EGKVKIC 228

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score =  141 bits (357), Expect = 8e-39
 Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 8/182 (4%)

Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPE 179
            +PE     G  +  +  VT++D E +T     LITN  K   Y  LI+ TG   +  P 
Sbjct: 63  SSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTV-PP 121

Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239
             G     V+  ++  DA  L     KAK + ++G GYIG E+A A      +  +I   
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGH 181

Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTV 299
             +L + F         + Y+ +GV  V G+ +   E   D  +      DG  I +D  
Sbjct: 182 ERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEIITK-TLDGKEIKSDIA 239

Query: 300 IL 301
           IL
Sbjct: 240 IL 241

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score =  138 bits (351), Expect = 5e-38
 Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 7/180 (3%)

Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLI---TNSGKLLKYGSLIVATGCTASRFPEKI 181
            T E  + + I+++    V ++D+E Q +        +   Y  LI+ATG +      + 
Sbjct: 63  ITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIR- 121

Query: 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241
           G     +   + ++ A A +  LE ++ V V+G G IGME     V  K    +     +
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLEN 181

Query: 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
           LL + F   +    ++  ++  V F    ++  +E         +       I  D+ I 
Sbjct: 182 LLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIE--ETANGIVL-ETSEQEISCDSGIF 238

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score =  134 bits (340), Expect = 2e-36
 Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 11/184 (5%)

Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPE 179
            T E  + +G+ +     +T+I  ++       L++   ++  Y  LI++ G        
Sbjct: 61  MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI 120

Query: 180 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
             G  L  ++ +R    A  L       +   VVV+G GYIG+E A A        T+I 
Sbjct: 121 P-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 179

Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
             +  L             +  + N +    G +++  E   DGRV  V + D +  DAD
Sbjct: 180 ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDGRVQKV-VTDKNAYDAD 236

Query: 298 TVIL 301
            V++
Sbjct: 237 LVVV 240

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score =  132 bits (334), Expect = 2e-35
 Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 18/192 (9%)

Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFP--- 178
              E  +  G ++  + PV SID + +T   L+     +  Y  LI ATG      P   
Sbjct: 97  SDKEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKG 156

Query: 179 -------EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGW 229
                   +    L  + +++   ++  +I+ LE    K+V VVG GYIG+E+A A    
Sbjct: 157 AEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRK 216

Query: 230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289
             +  +I   +  L   +   L     +  +++G++   G ++K +    +G+V  + + 
Sbjct: 217 GKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA--GNGKVEKI-IT 273

Query: 290 DGSTIDADTVIL 301
           D +  D D VIL
Sbjct: 274 DKNEYDVDMVIL 285

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score =  129 bits (328), Expect = 1e-34
 Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 14/187 (7%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
           + PE+++    +E + +    +ID    T     L T   + LKY  L++A G  A+R P
Sbjct: 70  RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129

Query: 179 EKIGGY-LPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVG-WKLDTT 234
             + G  L GV  + ++ +A+ +  ++   +  K V+VGGG+IG+E+A +    W +DTT
Sbjct: 130 --VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTT 187

Query: 235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI 294
           ++   + ++    + SL+Q      ++N V    G  +  LE G +G+VA V + D  T+
Sbjct: 188 VVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTL 245

Query: 295 DADTVIL 301
           DAD VIL
Sbjct: 246 DADLVIL 252

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score =  125 bits (316), Expect = 4e-33
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 9/181 (4%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIG 182
             PE + +K GI++     V  +D            K  ++  L+ A G +    P   G
Sbjct: 63  YPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQV-PAIEG 121

Query: 183 GYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
             L GV       DA A+   +E  K + VV++GGGYIG+E+A A      + T+I    
Sbjct: 122 VNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE 181

Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300
            +L+R F   +    E+   +  V          +E   + RV  V + D     A+ VI
Sbjct: 182 RVLRRSFDKEVTDILEEKL-KKHVNLRLQEITMKIE--GEERVEKV-VTDAGEYKAELVI 237

Query: 301 L 301
           L
Sbjct: 238 L 238

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score =  126 bits (320), Expect = 4e-33
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 13/185 (7%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
           QT E   ++  +++     V  I+ E++T     + TN      Y  LI++ G       
Sbjct: 97  QTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPS 156

Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
                    +  +R+V D D + + ++  K +   V+GGG+IG+E+        ++ T++
Sbjct: 157 IPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLV 216

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              N ++       +A    +  + + V+ V    +  LE   +G V  V+L+ GS I  
Sbjct: 217 EMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALE--ENGAV--VRLKSGSVIQT 271

Query: 297 DTVIL 301
           D +IL
Sbjct: 272 DMLIL 276

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score =  125 bits (316), Expect = 7e-33
 Identities = 46/185 (24%), Positives = 90/185 (48%), Gaps = 13/185 (7%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
           +  + +++K GI+   +  VT +D EK+        T       Y  L++ATG       
Sbjct: 97  RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPE 156

Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
            + G  L GVH ++ + DA+ ++ +LE  K + V ++GGG IG+E+A   V       +I
Sbjct: 157 WE-GRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMI 215

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              +H+   ++   +A+   +   ++ ++ +   ++K  +   + RV AV+  D  T  A
Sbjct: 216 ERNDHIG-TIYDGDMAEYIYKEADKHHIEILTNENVKAFK--GNERVEAVET-DKGTYKA 271

Query: 297 DTVIL 301
           D V++
Sbjct: 272 DLVLV 276

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score =  119 bits (302), Expect = 4e-31
 Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 19/185 (10%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
            TPE + ++  I +     V +I+ E+QT       TN      Y  LI++ G +     
Sbjct: 62  YTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGAS----A 117

Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
             +G        +R++ D DA+   ++  +  KV+VVG GY+ +EV        L  T+I
Sbjct: 118 NSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              + +  +L    + Q       +  + +     I  +  G++     +  + G     
Sbjct: 178 HRSDKIN-KLMDADMNQPILDELDKREIPYRLNEEINAIN-GNE-----ITFKSGKVEHY 230

Query: 297 DTVIL 301
           D +I 
Sbjct: 231 DMIIE 235

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score =  118 bits (299), Expect = 3e-30
 Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 31/204 (15%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
           QTPE +K +  +E+  +  V +ID   +      L+  S     Y +L+++ G      P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP 121

Query: 179 EKIGGY-LPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTI 235
             I G   P  H +R++ D D ++ +++    +   VVGGG+IG+E+  +     + TT+
Sbjct: 122 --IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTL 179

Query: 236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE------------------A 277
           +   + ++       +A    Q  +  GV    G ++  +                    
Sbjct: 180 LELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQ 238

Query: 278 GSDGRVAAVKLEDGSTIDADTVIL 301
              G ++   L +G  ++ D +I+
Sbjct: 239 HIKGHLSLT-LSNGELLETDLLIM 261

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 79.5 bits (197), Expect = 8e-17
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 23/153 (15%)

Query: 154 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 207
           ++ +G+ +    +++ATG             + G             ++S     LEK  
Sbjct: 146 LSVTGERISAEKILIATGAKIVSNSA-----IKGSDLC---------LTSNEIFDLEKLP 191

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           K +V+VGGGYIG+E A    G  + TT++   + +L R F   L Q         G+  +
Sbjct: 192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISII 250

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300
             A++  +++  +     V L +G TI AD V+
Sbjct: 251 YEATVSQVQSTENCYN--VVLTNGQTICADRVM 281

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 79.1 bits (196), Expect = 1e-16
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 23/140 (16%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG   S  P+     +PGV Y          I S     L    ++V VVG GYIG+
Sbjct: 136 LIATGGRPSH-PD-----IPGVEYG---------IDSDGFFALPALPERVAVVGAGYIGV 180

Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280
           E+     G    T +    +  L   F P +++   ++    G +    A  K +   +D
Sbjct: 181 ELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTD 239

Query: 281 GRVAAVKLEDGSTIDADTVI 300
           G +  ++LEDG +   D +I
Sbjct: 240 GSL-TLELEDGRSETVDCLI 258

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 78.2 bits (193), Expect = 2e-16
 Identities = 52/287 (18%), Positives = 91/287 (31%), Gaps = 63/287 (21%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           +++GG   A  AA T      +   + +++K  ++ Y RPAL                  
Sbjct: 5   LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS-YFRPALP-------------HVAI 50

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT----NSGKLLKYGSLIVAT 170
                   +    E   EKGI+   +  V  ID +   +       S    +Y  +IV  
Sbjct: 51  GVRDVDELKVDLSEALPEKGIQFQ-EGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGI 109

Query: 171 GCTASRFPEKIGGYLPGVHYIRDVADADAL---ISSLEKAKKVV--------------VV 213
           G       E + G+    + + +   A  L   + S +     +              V 
Sbjct: 110 GAHL--ATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVP 167

Query: 214 GGGYIGMEVAAAAVGWKL---------------DTTIIF--PENHLLQRLFTPSLAQRYE 256
                  + A     +++                  +    P  +L     +P+  +   
Sbjct: 168 ENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSD--LSPNSRKAVA 225

Query: 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP 303
            +Y Q G+K V    IK +          +  E G+TI AD  ILLP
Sbjct: 226 SIYNQLGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLP 266

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 19/79 (24%)

Query: 208 KKVVVVGGGYIGMEVAAAA---VGWKLDTTIIFPENHLLQRLFTPSL------------- 251
            KV+V+GG +  +  A      VG K D  +I          F P+L             
Sbjct: 2   TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS---YFRPALPHVAIGVRDVDEL 58

Query: 252 AQRYEQLYQQNGVKFVKGA 270
                +   + G++F +G 
Sbjct: 59  KVDLSEALPEKGIQFQEGT 77

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 23/140 (16%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKAKKVVVVGGGYIGME 221
           ++A G      P      + G+            ISS     ++++KK+ +VG GYI +E
Sbjct: 146 LIAVGNKPVFPP------VKGIENT---------ISSDEFFNIKESKKIGIVGSGYIAVE 190

Query: 222 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 281
           +        +D+ I    N +L R F  S+    E   ++N +  V  A +  ++  SD 
Sbjct: 191 LINVIKRLGIDSYIFARGNRIL-RKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDK 249

Query: 282 RVAAVKLEDGSTI-DADTVI 300
            + ++ L DG      D VI
Sbjct: 250 NL-SIHLSDGRIYEHFDHVI 268

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 78.0 bits (193), Expect = 3e-16
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 26/143 (18%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG      P      +PG+ +          ISS     L +  ++V+ VGGG+I +
Sbjct: 160 LLATGSWPQM-PA-----IPGIEHC---------ISSNEAFYLPEPPRRVLTVGGGFISV 204

Query: 221 EVA---AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277
           E A    A        T+ +  N +L R F  ++ +   +    NG++ +   +   +  
Sbjct: 205 EFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGIEIMTNENPAKVSL 263

Query: 278 GSDGRVAAVKLEDGSTIDADTVI 300
            +DG    V  E G T+D D V+
Sbjct: 264 NTDGSK-HVTFESGKTLDVDVVM 285

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 76.8 bits (190), Expect = 7e-16
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 26/143 (18%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG             + G             I+S     L++A K+ + VGGGYI +
Sbjct: 156 LLATGSWPQH-LG-----IEGDDLC---------ITSNEAFYLDEAPKRALCVGGGYISI 200

Query: 221 EVA---AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277
           E A    A         + +  + +L R F   L ++  +  + NG+      +   +  
Sbjct: 201 EFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGINVRTHENPAKVTK 259

Query: 278 GSDGRVAAVKLEDGSTIDADTVI 300
            +DG    V  E G+  D D V+
Sbjct: 260 NADGTR-HVVFESGAEADYDVVM 281

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 76.4 bits (189), Expect = 8e-16
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 22/153 (14%)

Query: 154 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 207
           +  SGK +    +++A G   S   + +    PG             I+S     L    
Sbjct: 125 LLASGKTVTAERIVIAVGGHPSP-HDAL----PGHELC---------ITSNEAFDLPALP 170

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           + +++ GGGYI +E A    G  + TT+I+    +L   F   + +      ++ G++ +
Sbjct: 171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRIL 229

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300
               I+++ A +DGR           I AD V+
Sbjct: 230 CEDIIQSVSADADGRR-VATTMKHGEIVADQVM 261

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 75.6 bits (186), Expect = 1e-15
 Identities = 46/280 (16%), Positives = 79/280 (28%), Gaps = 57/280 (20%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           VI+G G     AA    E   +   + ++S   Y     P+                   
Sbjct: 8   VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF-QFVPSNPW---------------- 50

Query: 115 HTCVGSGG------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
              VG G             + + KGI  I       ID E Q +    G  + Y  L++
Sbjct: 51  ---VGVGWKERDDIAFPIRHYVERKGIHFI-AQSAEQIDAEAQNITLADGNTVHYDYLMI 106

Query: 169 ATGCTASRFPEKIGG---YLPGVHYIRDVADADALISSLEKAKK----VVVVGGGYIGME 221
           ATG   +   E + G   +   V  I  V  A+   +  +   +    +V+         
Sbjct: 107 ATGPKLA--FENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCF 164

Query: 222 VAAAAVGWKLDT--------------TIIFPENHLLQRL--FTPSLAQRYEQLYQQNGVK 265
             A      + +              T I  E ++                +  ++ G++
Sbjct: 165 GPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE 224

Query: 266 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305
                 +  +E   +        E G TI       LP  
Sbjct: 225 AYTNCKVTKVED--NKMYVTQVDEKGETIKEMV---LPVK 259

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 24/114 (21%)

Query: 204 LEKAKKVVVVGGGYIGMEVAAA---AVGWKLDTTIIFPENHLLQRLFTPSL--------- 251
           +  +  VV++G G  GM  A     A+G   + T+I   ++     F PS          
Sbjct: 1   MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF---QFVPSNPWVGVGWKE 57

Query: 252 ----AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
               A       ++ G+ F+   S + ++A  + +   + L DG+T+  D +++
Sbjct: 58  RDDIAFPIRHYVERKGIHFIA-QSAEQIDA--EAQ--NITLADGNTVHYDYLMI 106

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 22/141 (15%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           +VATG  A   PE I    PG               S     LE+  KKVVVVG GYIG+
Sbjct: 153 LVATGGKAIF-PENI----PGFELG---------TDSDGFFRLEEQPKKVVVVGAGYIGI 198

Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280
           E+A    G   +T ++     +L R F   +       Y + G+   K + I  +E   +
Sbjct: 199 ELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVE 257

Query: 281 GRVAAVKLEDGSTI-DADTVI 300
                + + D  +I D D +I
Sbjct: 258 TDKLKIHMNDSKSIDDVDELI 278

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 71.4 bits (176), Expect = 3e-14
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 23/140 (16%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG      P      LPG             I+S     L++  K+V ++G GYIG+
Sbjct: 135 VIATGGRPIV-PR-----LPGAELG---------ITSDGFFALQQQPKRVAIIGAGYIGI 179

Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280
           E+A     +  + T++  E+ LL   F P L+    +     G++     ++  LE  + 
Sbjct: 180 ELAGLLRSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQ 238

Query: 281 GRVAAVKLEDGSTIDADTVI 300
           G    V  +       D+VI
Sbjct: 239 GTT-LVAQDGTRLEGFDSVI 257

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 66.8 bits (164), Expect = 1e-12
 Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 30/162 (18%)

Query: 154 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 207
           I  SGK      +++ATG   S  P +    +PG             I+S     LE+  
Sbjct: 140 IEVSGKKYTAPHILIATGGMPST-PHESQ--IPGASLG---------ITSDGFFQLEELP 187

Query: 208 KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265
            + V+VG GYI +E+A   +A+G    T+++   + +L R F   ++    +  +  GV+
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVE 244

Query: 266 FVKGASIKNLEAGSDGRVAAV-------KLEDGSTIDADTVI 300
            +K + +K ++    G   ++               D D ++
Sbjct: 245 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL 286

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 66.8 bits (164), Expect = 1e-12
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 27/145 (18%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG       +     + G          +  I+S     L+++  K +VVG  Y+ +
Sbjct: 152 VIATGGRPRYPTQ-----VKG--------ALEYGITSDDIFWLKESPGKTLVVGASYVAL 198

Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280
           E A    G  LDTT++     L  R F   ++    +  + +G +F+KG    +++    
Sbjct: 199 ECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT 256

Query: 281 GRVAAVKLEDGS-----TIDADTVI 300
            ++  V  ED +     T   DTV+
Sbjct: 257 NQL-QVTWEDHASGKEDTGTFDTVL 280

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 64.5 bits (158), Expect = 8e-12
 Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 30/146 (20%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++A G    R+P+  G    G             I+S     L++   K +VVG GYIG+
Sbjct: 155 VIAVGGRP-RYPDIPGAVEYG-------------ITSDDLFSLDREPGKTLVVGAGYIGL 200

Query: 221 EVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278
           E A     +G   + T++   + +L R F   +A+      ++ G+ F++     ++E  
Sbjct: 201 ECAGFLKGLG--YEPTVMV-RSIVL-RGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQ 256

Query: 279 SDGRVAA----VKLEDGSTIDADTVI 300
            DG++      V+  + S    DTV+
Sbjct: 257 DDGKLLVKYKNVETGEESEDVYDTVL 282

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 50/280 (17%), Positives = 84/280 (30%), Gaps = 62/280 (22%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           V+VGGG     AA+           + ++                              +
Sbjct: 6   VVVGGGTGGATAAKYIKLAD-PSIEVTLIEPNTD-------------------------Y 39

Query: 115 HTCVGS----GGERQTPEWYKE------KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 164
           +TC  S    GG+R+              GI+++  D  T ID +K+ + T  G    Y 
Sbjct: 40  YTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVV-HDSATGIDPDKKLVKTAGGAEFGYD 98

Query: 165 SLIVATGCTASRFPEKIGGYLP-----GVHYIRDVADADAL---ISSLEKAKKVVVV--- 213
             +VA G       +KI GY         H  +       L   +  +     VV+    
Sbjct: 99  RCVVAPGIELI--YDKIEGYSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPA 156

Query: 214 ------GGGYIGMEVAAAAV---GWKLDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNG 263
                  G Y      A  +          I+        Q  F+    + Y    +   
Sbjct: 157 APFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAM 216

Query: 264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP 303
           +++  G     ++   DG    V+   G    AD + L+P
Sbjct: 217 IEWHPGPDSAVVKV--DGGEMMVETAFGDEFKADVINLIP 254

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 17/151 (11%)

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK--AKKVVVVG 214
           +GK+ K  +LI+A G             +PGV+       A  +   L+      VVVVG
Sbjct: 169 AGKVFKAKNLILAVGAGPGTLD------VPGVNAKGVFDHATLVEE-LDYEPGSTVVVVG 221

Query: 215 GGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 272
           G    +E      A G +  T ++     L   +             ++ G++ + G+++
Sbjct: 222 GSKTAVEYGCFFNATGRR--TVMLVRTEPLK-LIKDNETRAYVLDRMKEQGMEIISGSNV 278

Query: 273 KNLEAGSDGRVAAVKLEDG---STIDADTVI 300
             +E  ++GRV AV          I+ D V 
Sbjct: 279 TRIEEDANGRVQAVVAMTPNGEMRIETDFVF 309

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 42/170 (24%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
            T+ D        +         ++VATG +           LP         D + +++
Sbjct: 133 ATAADGSTSEHEADV--------VLVATGASPRI--------LPSAQP-----DGERILT 171

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPS---- 250
                 L+     ++VVG G  G E       +G  +  T++  ++H+L     P     
Sbjct: 172 WRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELG--VPVTVVASQDHVL-----PYEDAD 224

Query: 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300
            A   E+ + + GV+  K A   ++     G    V + DG T++    +
Sbjct: 225 AALVLEESFAERGVRLFKNARAASVTRTGAG--VLVTMTDGRTVEGSHAL 272

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 24/189 (12%)

Query: 124 RQTPEWY-----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT--ASR 176
            +  E+      +   +E+  + P+T  DI +            +  +I ATG T     
Sbjct: 443 GRVKEYREAVLAELPNVEIYRESPMTGDDIVE----------FGFEHVITATGATWRTDG 492

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG--YIGMEVAAAAVGWKLDTT 234
                   LP    ++ +   D     L   KKVVV      Y+G  VA        + +
Sbjct: 493 VARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVS 552

Query: 235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--S 292
           I+ P   +           R ++   +NGV  V   +   + A   G V           
Sbjct: 553 IVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHA---VVAVGAGGVTVRDTYASIER 609

Query: 293 TIDADTVIL 301
            ++ D V++
Sbjct: 610 ELECDAVVM 618

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 35/150 (23%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG             +PG        D +  ISS     L     K +VVG  Y+ +
Sbjct: 178 LIATGERPRY-LG-----IPG--------DKEYCISSDDLFSLPYCPGKTLVVGASYVAL 223

Query: 221 EVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA---SIKNL 275
           E A   A +G  LD T++   + LL R F   +A +  +  +++G+KF++      ++ +
Sbjct: 224 ECAGFLAGIG--LDVTVMV-RSILL-RGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQI 279

Query: 276 EAGSDGRVAAVKLEDGST-----IDADTVI 300
           EAG+ GR+  V  +  ++      + +TV+
Sbjct: 280 EAGTPGRL-RVVAQSTNSEEIIEGEYNTVM 308

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 14/110 (12%)

Query: 203 SLEKA-KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261
           SL     K +V+G  Y+ +E A        D T++   + LL R F   +A++     + 
Sbjct: 281 SLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMV-RSILL-RGFDQQMAEKVGDYMEN 338

Query: 262 NGVKFVKGASIKN--------LEAGSDGR-VAAVKLEDGST--IDADTVI 300
           +GVKF K               E    G  +      DG     + +TVI
Sbjct: 339 HGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVI 388

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 54.5 bits (132), Expect = 8e-09
 Identities = 40/266 (15%), Positives = 75/266 (28%), Gaps = 68/266 (25%)

Query: 55  VIVGGG----NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
            ++G G    NA+    R       A  ++ +          R  +T+            
Sbjct: 10  AVIGAGPAGLNASLVLGR-------ARKQIALFDNNTN----RNRVTQNS---------- 48

Query: 111 LPGFHTCVG-SGGE-----RQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLL 161
             GF T  G    E           Y        Y+  V  I  +      ++T      
Sbjct: 49  -HGFITRDGIKPEEFKEIGLNEVMKY---PSVHYYEKTVVMITKQSTGLFEIVTKDHTKY 104

Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGV--HYIRDVA-----DADALISSLEKAKKVVVVG 214
               +++ATG     FP      +P V  +Y + +      D         K + ++++ 
Sbjct: 105 LAERVLLATGMQE-EFPS-----IPNVREYYGKSLFSCPYCDGW-----ELKDQPLIIIS 153

Query: 215 GGYIG-MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 273
                 + +      W  D  I               L+Q          +  +  + I+
Sbjct: 154 ENEDHTLHMTKLVYNWSTDLVIATN---------GNELSQTIMDELSNKNIPVITES-IR 203

Query: 274 NLEAGSDGRVAAVKLEDGSTIDADTV 299
            L+ G  G +  V+   G  I+    
Sbjct: 204 TLQ-GEGGYLKKVEFHSGLRIERAGG 228

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 33/164 (20%), Positives = 74/164 (45%), Gaps = 26/164 (15%)

Query: 145 SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS- 203
               E++ L+  +G+ L+   +++ATG              P         D + +++S 
Sbjct: 112 RFLSERKVLVEETGEELEARYILIATGSAPLI--------PPWAQV-----DYERVVTST 158

Query: 204 ----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256
                 +  K+++VVGGG IG+E+      +G +    ++   + +L       +++  E
Sbjct: 159 EALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAE--VIVLEYMDRILP-TMDLEVSRAAE 215

Query: 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300
           +++++ G+    G  +  +   + G  A V+LE G  ++AD V+
Sbjct: 216 RVFKKQGLTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVL 257

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 25/164 (15%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           V + + ++    T          +I+A+G   ++        LPGV Y     D     +
Sbjct: 121 VKTDEGKEIEAETRY--------MIIASGAETAKLR------LPGVEYCLTSDDIFGYKT 166

Query: 203 SLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 259
           S  K  + +V++G GYIG+E+A+    +G +    II   +  L  L    +      L 
Sbjct: 167 SFRKLPQDMVIIGAGYIGLEIASIFRLMGVQT--HIIEMLDRALITLEDQDIVN---TLL 221

Query: 260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTVI 300
               +     + +  ++   D     +         +I  ++V+
Sbjct: 222 SILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVV 265

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 34/165 (20%), Positives = 67/165 (40%), Gaps = 30/165 (18%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           V   D   +++  ++         I+ATG +           +PG     +V   +  I 
Sbjct: 123 VDLNDGGTESVTFDN--------AIIATGSSTRL--------VPGTSLSANVVTYEEQIL 166

Query: 203 SLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPS----LAQRYE 256
           S E  K +++ G G IGME        G  +D TI+  E   L R   P+    +++  E
Sbjct: 167 SRELPKSIIIAGAGAIGMEFGYVLKNYG--VDVTIV--E--FLPR-ALPNEDADVSKEIE 219

Query: 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTVI 300
           + +++ GV  +    ++++  G       V  +  +  + A+ V+
Sbjct: 220 KQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVL 264

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 49.4 bits (119), Expect = 6e-07
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 37/171 (21%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
            T  D   Q + T +        +++ATG   +          PG+       D D ++S
Sbjct: 129 ATKADGGTQVIDTKN--------ILIATGSEVTP--------FPGITI-----DEDTIVS 167

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
           S     L+K  +K+VV+G G IG+E+ +    +G  +  T +    H+        +++ 
Sbjct: 168 STGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADV--TAVEFLGHVGGVGIDMEISKN 225

Query: 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTVI 300
           ++++ Q+ G KF     +      SDG++  V +E  S      I  D ++
Sbjct: 226 FQRILQKQGFKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLL 275

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 49.0 bits (118), Expect = 9e-07
 Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 30/156 (19%)

Query: 156 NSGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA-KK 209
           +S +   + + I+ATG      P      +I            +    AL  +L +  K 
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELPNFKFSNRI------------LDSTGAL--NLGEVPKS 172

Query: 210 VVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           +VV+GGGYIG+E+    A  G K+  TI+     +L   F   +A   ++  ++ GV+ V
Sbjct: 173 LVVIGGGYIGIELGTAYANFGTKV--TILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVV 229

Query: 268 KGASIKNLEAGSDGRVAAVKLEDG---STIDADTVI 300
             A  K  E   DG    V  E      TIDAD V+
Sbjct: 230 TNALAKGAEEREDG--VTVTYEANGETKTIDADYVL 263

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 27/170 (15%), Positives = 67/170 (39%), Gaps = 29/170 (17%)

Query: 143 VTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVA 195
           V+    +       +G+  ++ + + I+A G   ++ P      +I            + 
Sbjct: 127 VSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDPRI------------ID 174

Query: 196 DADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLA 252
            + AL  +L++   K++++GGG IG+E+    + +G +L   ++   + L+Q      L 
Sbjct: 175 SSGAL--ALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRL--DVVEMMDGLMQ-GADRDLV 229

Query: 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTVI 300
           + +++  +      +       +E   DG     +  +        D V+
Sbjct: 230 KVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVL 279

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 29/156 (18%)

Query: 157 SGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA--KK 209
            G+     SLI+ATG            E +                 AL   +E+   K+
Sbjct: 126 GGERYGAKSLILATGSEPLELKGFPFGEDV------------WDSTRAL--KVEEGLPKR 171

Query: 210 VVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           ++V+GGG +G+E+      +G ++  T+I     +L     P  A    +  ++ G++  
Sbjct: 172 LLVIGGGAVGLELGQVYRRLGAEV--TLIEYMPEILP-QGDPETAALLRRALEKEGIRVR 228

Query: 268 KGASIKNLEAGSDGRVAAVKLEDG---STIDADTVI 300
                   E   DG    ++  +G     +  D V+
Sbjct: 229 TKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVL 264

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 31/168 (18%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD----VADAD 198
           VT+   E+Q L   +        +++ATG   +         +PGV    D    V+   
Sbjct: 147 VTNEKGEEQVLEAKN--------VVIATGSDVAG--------IPGVEVAFDEKTIVSSTG 190

Query: 199 ALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255
           AL  +LEK    ++VVGGG IG+E+ +  A +G K+  T++   + +L       +A++ 
Sbjct: 191 AL--ALEKVPASMIVVGGGVIGLELGSVWARLGAKV--TVVEFLDTILG-GMDGEVAKQL 245

Query: 256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTVI 300
           +++  + G+ F  GA +       DG     +   G    T+DA+ V+
Sbjct: 246 QRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVL 293

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 34/174 (19%)

Query: 146 IDIEKQ-----TLITNSGKLLKYGSLIVATGCTA--SRFPEKIGGY----LPGVHYIRDV 194
               K         TN+G + +  ++++A G  A   R   ++G         V+Y   V
Sbjct: 98  TKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA--V 155

Query: 195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--LFT--PS 250
              +       K K+VV+VGGG        +A+ W +          L+ R   F     
Sbjct: 156 KSVEDF-----KGKRVVIVGGG-------DSALDWTVGLIKNAASVTLVHRGHEFQGHGK 203

Query: 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS----TIDADTVI 300
            A   E+      +       + ++E  S+G +  V L        T++AD ++
Sbjct: 204 TAHEVERARANGTIDVYLETEVASIE-ESNGVLTRVHLRSSDGSKWTVEADRLL 256

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 27/154 (17%), Positives = 65/154 (42%), Gaps = 20/154 (12%)

Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKV 210
            L     +++ +   +VATG + +  P      +PG+         +AL  + +   +++
Sbjct: 128 RLNEGGERVVMFDRCLVATGASPAVPP------IPGLKESPYWTSTEAL--ASDTIPERL 179

Query: 211 VVVGGGYIGMEVAA--AAVGWKLDTTIIFPE-NHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
            V+G   + +E+A   A +G K+  T++    N L  R   P++ +     ++  G++ +
Sbjct: 180 AVIGSSVVALELAQAFARLGSKV--TVL--ARNTLFFR-EDPAIGEAVTAAFRAEGIEVL 234

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
           +      +       V  +    G  + AD +++
Sbjct: 235 EHTQASQVAHMDGEFV--LTTTHG-ELRADKLLV 265

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 35/169 (20%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           V +I+ E   +            +I+ATG             LPGV       D   ++S
Sbjct: 128 VDTIEGENTVVKGKH--------IIIATGSDVKS--------LPGVTI-----DEKKIVS 166

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
           S     L +  KK+VV+G GYIG+E+ +    +G +   T++   + ++       + ++
Sbjct: 167 STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSE--VTVVEFASEIVP-TMDAEIRKQ 223

Query: 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTVI 300
           +++  ++ G+KF     +  ++   DG    V+   G   + I+AD V+
Sbjct: 224 FQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVL 272

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 33/172 (19%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP------EKIGGYLPGVHYIRDVAD 196
           VT +D  + T       +L   ++IVATG   + FP      EKI            V+ 
Sbjct: 128 VTPVDGLEGT--VKEDHILDVKNIIVATGSEVTPFPGIEIDEEKI------------VSS 173

Query: 197 ADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253
             AL  SL++  K++ ++GGG IG+E+ +  + +G K+  T++  +  +        +A+
Sbjct: 174 TGAL--SLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKV--TVVEFQPQIGA-SMDGEVAK 228

Query: 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTVI 300
             ++  ++ G+ F     + + +   D  V  + +ED        ++A+ ++
Sbjct: 229 ATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL 280

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 29/164 (17%)

Query: 148 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS---- 203
           +++ TL  +    +    +++ATG   +        Y   +           L+++    
Sbjct: 122 LDEHTLQVDDHSQVIAKRIVIATGSRPN--------YPEFLAA-----AGSRLLTNDNLF 168

Query: 204 -LEKA-KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQL 258
            L    K V V G G IG+E+  A        +   +      +   L    + +  E+ 
Sbjct: 169 ELNDLPKSVAVFGPGVIGLELGQA---LSRLGVIVKVFGRSGSVAN-LQDEEMKRYAEKT 224

Query: 259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTVI 300
           + +    F   A + +     D        + G   T     V+
Sbjct: 225 FNEEF-YFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVL 267

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 45/301 (14%), Positives = 90/301 (29%), Gaps = 95/301 (31%)

Query: 48  ANENREFVIVGGGNAAGYAARTFVEHGM------ADGRLCIVSKEAYAPYERPALTKGYL 101
           A + +   +VG G A    A      G       A   +                  G  
Sbjct: 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI------------------GGQ 411

Query: 102 FPLDKKPARLPGFHTCVGSGGERQTPEWY----KEKGIEMIYQDPVTSIDIEKQTLITNS 157
           F + K+      F+         +T  +Y    +  G+ +     VT+  ++        
Sbjct: 412 FNIAKQIPGKEEFY---------ETLRYYRRMIEVTGVTLKLNHTVTADQLQA------- 455

Query: 158 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 217
                +   I+A+G      P      + G+ + + ++  D L        KV ++G G 
Sbjct: 456 -----FDETILASGIVPRTPP------IDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGG 504

Query: 218 IGMEVA---------------AAAVGWKLDTTIIFP---------------ENHLLQRLF 247
           IG + A                    W +D+++                  +  +LQR  
Sbjct: 505 IGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKA 564

Query: 248 T-------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300
           +        +    +       GVK + G S + ++   D  +  V   +   +  D V+
Sbjct: 565 SKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID---DDGLHVVINGETQVLAVDNVV 621

Query: 301 L 301
           +
Sbjct: 622 I 622

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 38/186 (20%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG---- 187
                  +   +++ E     + T+ G      ++I+A G  A   P +IG   PG    
Sbjct: 79  NPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFE-PRRIG--APGEREF 135

Query: 188 ----VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243
               V+Y   V           + K+V++VGGG        +AV W L+         L+
Sbjct: 136 EGRGVYYA--VKSKAEF-----QGKRVLIVGGG-------DSAVDWALNLLDTARRITLI 181

Query: 244 QR--LF--TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----I 294
            R   F    +  +   + +++  ++ +    ++ +E   D RV    +    T     +
Sbjct: 182 HRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEG--DERVRWAVVFHNQTQEELAL 239

Query: 295 DADTVI 300
           + D V+
Sbjct: 240 EVDAVL 245

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 33/167 (19%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           VT+ D   Q L T +        +I+A+G             +P         D D ++ 
Sbjct: 131 VTAADGSSQVLDTEN--------VILASGSKPVE--------IPPAPV-----DQDVIVD 169

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
           S      +    K+ V+G G IG+E+ +  A +G ++  T++   +  L       +A+ 
Sbjct: 170 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEV--TVLEAMDKFLP-AVDEQVAKE 226

Query: 255 YEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTVI 300
            +++  + G+K + GA +   E  +    V  V  E   +   D +I
Sbjct: 227 AQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLI 273

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 23/158 (14%), Positives = 49/158 (31%), Gaps = 24/158 (15%)

Query: 167 IVATGCTASRFPEKIGGY--LPGV-HYIRDVADA-DALISSLEKAKKVVVVGGG--YIGM 220
           I+ATG   +        +  +PG    + D       +    +  K+VV++     ++  
Sbjct: 484 IIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAP 543

Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS- 279
            +A        + TI+   +      FT        +L+ +  V+ +       +E G  
Sbjct: 544 SLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLH-ELHVEELGDHFCSRIEPGRM 602

Query: 280 ----------------DGRVAAVKLEDGSTIDADTVIL 301
                            G            I+ D+++L
Sbjct: 603 EIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVL 640

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 21/149 (14%)

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DALISSLEKA-KKVVVVG 214
            G+ ++   L++ATG ++          LP +     V  + +AL  + +   + +VVVG
Sbjct: 129 DGQRIQCEHLLLATGSSSVE--------LPMLPLGGPVISSTEAL--APKALPQHLVVVG 178

Query: 215 GGYIGMEVAAAAVGW-KL--DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 271
           GGYIG+E+  A   + KL    +++     +L   +   L     +  ++ G+    G S
Sbjct: 179 GGYIGLELGIA---YRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLGIALHLGHS 234

Query: 272 IKNLEAGSDGRVAAVKLEDGSTIDADTVI 300
           ++  E G    +A         ++AD V+
Sbjct: 235 VEGYENG--CLLANDGKGGQLRLEADRVL 261

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 34/204 (16%), Positives = 71/204 (34%), Gaps = 43/204 (21%)

Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF------PEKI 181
           E  K+ G+++I    ++  +I   TL         Y +  +  G    +         + 
Sbjct: 246 ELMKDLGVKIICGKSLSENEITLNTLKEEG-----YKAAFIGIGLPEPKTDDIFQGLTQD 300

Query: 182 GGYLPGVHYIRDVADADALISSLEKA------KKVVVVGGGYIGMEVAAAAV--GWKLDT 233
            G+     ++  VA +         +        V+V+G G    + A +A+  G +   
Sbjct: 301 QGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGAR-RV 359

Query: 234 TIIFPENHLLQRLFTPSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--- 289
            ++F      ++ F    A   E +L ++   +F+   S + +     GR+ AV+     
Sbjct: 360 FLVF------RKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVI-VKGGRIVAVQFVRTE 412

Query: 290 ----------DGS--TIDADTVIL 301
                     +     + AD VI 
Sbjct: 413 QDETGKWNEDEDQIVHLKADVVIS 436

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 35/169 (20%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           V  +D +++ L T           I+ATG   +         LP + +     D   ++S
Sbjct: 125 VNGLDGKQEMLETKK--------TIIATGSEPTE--------LPFLPF-----DEKVVLS 163

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
           S     L +  K +VV+GGG IG+E+ +  A +G ++  T++              +   
Sbjct: 164 STGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEV--TVVEFAPRCAP-TLDEDVTNA 220

Query: 255 YE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTVI 300
               L +   +KF+    +       D     V+ ++G   T+  + ++
Sbjct: 221 LVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALL 269

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 143 VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS-RFPEKIGGYLPGVHYI--RDVADA 197
           V  +    +   ++   G+     ++I ATG       PE  G        +     +  
Sbjct: 99  VQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTP 158

Query: 198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF-PENHLLQRLFTPSLAQRYE 256
                      +V ++GGG  G ++ A        T I       L   +    L +R  
Sbjct: 159 APF-----AGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERAT 213

Query: 257 QLYQQN--------GVKFVKGASIKN--LEAGSDGRVAA-----------VKLEDGSTID 295
           + ++                   +    L+A + G +AA           ++  DG+   
Sbjct: 214 ERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERA 273

Query: 296 ADTVIL 301
            D VI 
Sbjct: 274 FDAVIW 279

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 33/180 (18%), Positives = 50/180 (27%), Gaps = 46/180 (25%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP----G 187
            I  +    VT          +  + G+    G LI+A G T    PE I G        
Sbjct: 71  TIHWVEGR-VTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTD-ELPE-IAGLRERWGSA 127

Query: 188 VHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239
           V +        +                 K+ V+    + +  A     W   T      
Sbjct: 128 VFHCPYCHGYELDQ--------------GKIGVIAASPMAIHHALMLPDWGETTFFT--- 170

Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTV 299
                 +  P   Q    L    GV  V+   I+ +  G       V L DG +I    +
Sbjct: 171 ----NGIVEPDADQH-ALL-AARGV-RVETTRIREIA-GHAD----VVLADGRSIALAGL 218

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 32/173 (18%)

Query: 134 GIEMIYQDPVTSIDIEKQ-----TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-- 186
            +++I     + +           + T SG +LK  S+I+ATG         +   +P  
Sbjct: 281 DVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK----WRNMN--VPGE 334

Query: 187 ------GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
                 GV Y       D     L K K+V V+GGG  G+E A    G     T++    
Sbjct: 335 DQYRTKGVTY---CPHCDG---PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL---- 384

Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293
                +    + Q  +++     V  +  A    ++ G   +V  ++  D  +
Sbjct: 385 EFAPEMKADQVLQ--DKVRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVS 434

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	306
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.98
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.98
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.97
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.97
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.97
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.97
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.97
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.97
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.97
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.97
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.97
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.97
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.97
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.96
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.95
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.95
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.95
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.95
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.95
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.95
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.95
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.94
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.94
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.94
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.94
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.94
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.94
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.94
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.94
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.94
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.94
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.94
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.94
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.94
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.94
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.94
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.94
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.94
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.94
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.94
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.94
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.94
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.93
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.93
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.93
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.93
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.93
4dna_A	463	Probable glutathione reductase; structural genomic	99.93
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.93
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.93
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.93
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.93
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.93
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.93
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.93
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.93
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.93
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.93
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.93
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.93
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.93
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.93
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.93
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.93
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.93
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.92
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.92
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.92
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.92
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.92
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.92
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.92
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.92
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.92
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.91
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.91
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.9
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.9
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.9
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.89
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.89
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.89
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.88
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.88
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.87
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.86
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.85
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.42
3dme_A	369	Conserved exported protein; structural genomics, P	99.41
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.32
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.29
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.26
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.24
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.22
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.22
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.22
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.22
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.22
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.21
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.21
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.21
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.18
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.16
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.15
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.15
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.14
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.14
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.12
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.12
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.11
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.1
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.09
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.08
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.07
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.06
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.05
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.05
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.04
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.02
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.01
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.01
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.99
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.99
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.99
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.99
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.99
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.98
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.98
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.98
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.98
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.97
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.94
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.94
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.94
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.93
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.92
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.92
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.91
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.91
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.9
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.9
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.88
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.88
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.87
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.87
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.87
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.86
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.85
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.83
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.81
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.81
3atr_A	453	Conserved archaeal protein; saturating double bond	98.8
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.8
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.8
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.8
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.78
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.76
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.74
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.74
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.73
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.71
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.71
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.7
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.7
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.69
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.68
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.67
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.67
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.66
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.66
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.65
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.64
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.64
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.64
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.64
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.63
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.62
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.62
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.61
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.61
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.6
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.6
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.59
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.59
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.59
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.59
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.59
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.59
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.58
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.58
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.58
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.58
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.57
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.56
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.56
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.55
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.55
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.54
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.54
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.54
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.54
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.52
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.52
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.52
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.52
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.52
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.51
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.51
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.5
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.5
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.5
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.5
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.49
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.48
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.48
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.48
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.48
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.48
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.46
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.46
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.46
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.46
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.45
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.44
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.43
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.42
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.42
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.41
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.41
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.41
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.41
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.41
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.41
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.41
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.4
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.39
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.39
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.38
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.37
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.37
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.36
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.36
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.36
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.35
4dna_A	463	Probable glutathione reductase; structural genomic	98.34
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.34
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.34
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.34
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.34
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.32
3atr_A	453	Conserved archaeal protein; saturating double bond	98.31
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.29
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.29
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.29
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.28
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.28
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.28
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.27
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.27
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.27
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.27
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.27
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.27
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.26
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.25
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.24
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.24
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.23
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.22
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.22
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.2
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.19
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.19
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.18
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.15
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.15
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.15
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.14
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.13
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.13
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.09
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.09
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.09
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.08
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.08
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.07
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.05
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.05
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.03
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.03
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.03
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.03
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.03
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.01
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.0
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.0
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.0
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.99
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.99
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.97
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.95
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.95
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.94
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.93
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.93
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.91
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.9
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.84
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.82
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.78
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.77
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.76
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.76
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.75
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.74
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.73
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.7
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.67
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.67
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.66
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.63
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.61
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.59
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.59
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.57
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.53
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.43
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.42
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.42
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.39
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.39
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.31
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.31
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.3
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.27
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.25
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.25
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.17
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.14
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.11
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.98
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.91
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.91
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.75
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.72
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.71
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	96.61
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.45
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.43
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.41
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.37
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.21
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	96.14
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.13
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	96.01
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.85
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	95.85
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.64
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.57
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.53
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.45
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.44
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.41
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.33
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.16
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.9
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.89
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.81
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.8
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	94.69
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	94.69
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.68
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.67
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	94.62
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.61
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.59
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.58
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.56
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.54
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.53
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.47
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.4
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.34
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.33
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.25
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.12
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.11
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.08
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.07
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.06
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.04
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	93.99
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.98
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	93.98
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.95
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	93.91
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.88
3tl2_A	315	Malate dehydrogenase; center for structural genomi	93.84
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.83
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.8
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.79
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.79
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	93.78
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.77
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	93.73
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	93.72
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	93.71
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	93.7
3qha_A	296	Putative oxidoreductase; seattle structural genomi	93.68
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	93.65
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.59
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	93.58
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	93.52
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	93.52
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	93.45
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	93.44
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.42
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	93.4
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	93.36
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.33
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	93.32
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	93.32
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	93.31
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.29
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	93.26
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.23
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	93.22
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.21
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	93.19
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.17
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.17
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	93.15
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	93.14
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.11
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.1
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.07
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	93.07
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.05
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	93.05
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.04
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	93.01
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	92.99
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	92.99
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	92.97
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	92.95
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.93
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	92.92
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	92.91
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	92.89
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	92.87
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	92.85
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	92.85
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.83
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.76
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	92.75
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	92.74
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	92.74
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	92.7
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	92.63
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	92.62
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.58
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.55
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	92.52
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	92.52
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	92.5
4ezb_A	317	Uncharacterized conserved protein; structural geno	92.44
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	92.43
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	92.39
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	92.37
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	92.34
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	92.33
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.29
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	92.27
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	92.23
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	92.23
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	92.21
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	92.14
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	92.13
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	92.13
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	92.12
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	92.09
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	92.09
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	92.09
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	92.08
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	92.01
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	92.01
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	91.99
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	91.99
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	91.97
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	91.96
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	91.95
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.95
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	91.91

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=3.1e-33  Score=249.13  Aligned_cols=241  Identities=34%  Similarity=0.541  Sum_probs=206.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +++||+|||||++|+++|.+|+++|+ +.+|+|+|+++...|.++.+...++..... ..           ........+
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~~~~~~~-~~-----------~~~~~~~~~   74 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYLAREKT-FE-----------RICIRPAQF   74 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC-CSCEEEEESSSSCCBCSGGGGTTTTTTSSC-SG-----------GGBSSCHHH
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCc-CCCEEEEecCCCCCcCcccCCHHHHcCCCC-HH-----------HhccCCHHH
Confidence            45799999999999999999999997 456999999998888766655433322110 10           112456778


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhc-CC
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AK  208 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~  208 (306)
                      +.+.+++++.++++..++...+.+.+.++..+.||+|++|||+.+.. |++++.+.+++..++...+...+...+.. ++
T Consensus        75 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~-~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~  153 (415)
T 3lxd_A           75 WEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRR-LSCVGADLAGVHAVRTKEDADRLMAELDAGAK  153 (415)
T ss_dssp             HHHTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCC-CBTTSSCCBTEECCCSHHHHHHHHHHHHTTCC
T ss_pred             HHHCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCC-CCCCCccccCEEEEcCHHHHHHHHHHhhhcCC
Confidence            88999999999999999999999999999999999999999998874 56777667788888788888887777777 89


Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  288 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~  288 (306)
                      +++|||+|.+++|+|..+...+.+|+++.+.+.++++..++.+.+.+.+.++++||++++++.|++++. +++.+.+|++
T Consensus       154 ~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~v~l  232 (415)
T 3lxd_A          154 NAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVRM  232 (415)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEE-SSSBEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEe-cCCcEEEEEe
Confidence            999999999999999999999999999999999998778999999999999999999999999999996 5677778999


Q ss_pred             CCCCEEecCEEEEecCC
Q 021871          289 EDGSTIDADTVILLPYD  305 (306)
Q Consensus       289 ~~G~~i~~d~vv~a~g~  305 (306)
                      .+|+++++|.||+|+|.
T Consensus       233 ~dG~~i~aD~Vv~a~G~  249 (415)
T 3lxd_A          233 QDGSVIPADIVIVGIGI  249 (415)
T ss_dssp             SSSCEEECSEEEECSCC
T ss_pred             CCCCEEEcCEEEECCCC
Confidence            99999999999999996

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=8e-33  Score=245.58  Aligned_cols=238  Identities=29%  Similarity=0.495  Sum_probs=206.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHh
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (306)
                      +||+|||||++|+++|.+|+++|+ +.+|+|+|+++...|.++.+...++.... ...           ........++.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~l~~~~-~~~-----------~~~~~~~~~~~   68 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKY-PGRIALINDEKHLPYQRPPLSKAYLKSGG-DPN-----------SLMFRPEKFFQ   68 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CSCEEEECCSSSSSBCSGGGGTGGGGSCC-CTT-----------SSBSSCHHHHH
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCCCCccCCHHHHCCCC-CHH-----------HccCCCHHHHH
Confidence            689999999999999999999996 56899999999888887766654443221 111           11345678888


Q ss_pred             hcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEE
Q 021871          132 EKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV  211 (306)
Q Consensus       132 ~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~  211 (306)
                      +.+++++. .++..++...+.+.+.++..+.||++++|||+.+.. |++++.+.+++..++...+...+......+++++
T Consensus        69 ~~~i~~~~-~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~-~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vv  146 (404)
T 3fg2_P           69 DQAIELIS-DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRM-LDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVV  146 (404)
T ss_dssp             HTTEEEEC-CCEEEEETTTTEEEESSSCEEECSEEEECCCEEECC-CCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEEE
T ss_pred             hCCCEEEE-EEEEEEECCCCEEEECCCCEEECCEEEEeeCCCccC-CCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeEE
Confidence            99999998 899999999999999999999999999999998774 5677777788888888888888888777899999


Q ss_pred             EEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC
Q 021871          212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG  291 (306)
Q Consensus       212 viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G  291 (306)
                      |+|+|.+|+|+|..+.+.+.+|+++.+.+.++++..++.+.+.+.+.++++||++++++.|++++. +++.+.+|.+.+|
T Consensus       147 ViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~V~~~dG  225 (404)
T 3fg2_P          147 VIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLSDG  225 (404)
T ss_dssp             EECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTS
T ss_pred             EECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEe-cCCcEEEEEeCCC
Confidence            999999999999999999999999999999998778999999999999999999999999999986 4567778999999


Q ss_pred             CEEecCEEEEecCC
Q 021871          292 STIDADTVILLPYD  305 (306)
Q Consensus       292 ~~i~~d~vv~a~g~  305 (306)
                      +++++|.||+|+|.
T Consensus       226 ~~i~aD~Vv~a~G~  239 (404)
T 3fg2_P          226 NTLPCDLVVVGVGV  239 (404)
T ss_dssp             CEEECSEEEECCCE
T ss_pred             CEEEcCEEEECcCC
Confidence            99999999999985

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=2.9e-33  Score=248.70  Aligned_cols=238  Identities=28%  Similarity=0.464  Sum_probs=202.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +++|+|||||++|+++|.+|+++|+ +.+|+|+|+++...|.++.+...++..... ..           .. .....++
T Consensus         2 ~~~vvIIGaG~AGl~aA~~L~~~g~-~~~V~li~~~~~~~y~~~~l~~~~~~g~~~-~~-----------~~-~~~~~~~   67 (410)
T 3ef6_A            2 ATHVAIIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLE-RP-----------PI-LAEADWY   67 (410)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEEECSSSSSBCSGGGGTHHHHTSSS-SC-----------CB-SSCTTHH
T ss_pred             CCCEEEEcccHHHHHHHHHHHccCc-CCeEEEEECCCCCCcCCccccHHHhCCCCC-HH-----------Hh-cCCHHHH
Confidence            3599999999999999999999996 456999999998888877665544322111 10           11 2345678


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeE
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  210 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v  210 (306)
                      .+.+++++.+++|..++...+.+.+.++..+.||+||+|||+.+.. |++|+.+.+++.+++...+...+.+.+..++++
T Consensus        68 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~-~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~v  146 (410)
T 3ef6_A           68 GEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRART-MALPGSQLPGVVTLRTYGDVQVLRDSWTSATRL  146 (410)
T ss_dssp             HHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEE
T ss_pred             HHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccC-CCCCCccccceEEeccHHHHHHHHHHhccCCeE
Confidence            8899999999999999999999999999899999999999999874 567777778888888888888887777778999


Q ss_pred             EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC
Q 021871          211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  290 (306)
Q Consensus       211 ~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~  290 (306)
                      +|||+|.+|+|+|..+.+.+.+|+++.+.+.++++.+++.+.+.+.+.++++||++++++.|++++.  ++.+.+|++.+
T Consensus       147 vViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~~d  224 (410)
T 3ef6_A          147 LIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASD  224 (410)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCEEEETT
T ss_pred             EEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEEEEECC
Confidence            9999999999999999999999999999999988778999999999999999999999999999995  33555799999


Q ss_pred             CCEEecCEEEEecCC
Q 021871          291 GSTIDADTVILLPYD  305 (306)
Q Consensus       291 G~~i~~d~vv~a~g~  305 (306)
                      |+++++|.||+|+|.
T Consensus       225 g~~i~aD~Vv~a~G~  239 (410)
T 3ef6_A          225 GRSFVADSALICVGA  239 (410)
T ss_dssp             SCEEECSEEEECSCE
T ss_pred             CCEEEcCEEEEeeCC
Confidence            999999999999985

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=5.9e-32  Score=241.67  Aligned_cols=242  Identities=30%  Similarity=0.462  Sum_probs=196.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +.+||+|||||++|+++|..|++.|+ +.+|+|+|+++...|.++.....++.... .      ..     .......++
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~-~------~~-----~~~~~~~~~   69 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKA-T------AE-----SLYLRTPDA   69 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCS-C------SG-----GGBSSCHHH
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCc-CCCEEEEECCCCCCCcCCCCcHHHhCCCC-C------hH-----HhcccCHHH
Confidence            35899999999999999999999986 55799999998776665444332221100 0      00     011234577


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCC---EEEEccHHHHHHHHHhhhc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG---VHYIRDVADADALISSLEK  206 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~  206 (306)
                      +++.+++++.+++|..++...+.+.++++..+.||+||+|+|+.+.. |++++.+.++   +.+++...+...+.+.+..
T Consensus        70 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~-~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~  148 (431)
T 1q1r_A           70 YAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRP-LPVASGAVGKANNFRYLRTLEDAECIRRQLIA  148 (431)
T ss_dssp             HHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CGGGTTHHHHSTTEEESSSHHHHHHHHHTCCT
T ss_pred             HHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccC-CCCCCcccCCCceEEEECCHHHHHHHHHHhhc
Confidence            88899999999999999998888999888889999999999998874 5566654445   7777777777777666667


Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC-CCCcEEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAA  285 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~v~~  285 (306)
                      +++++|||+|.+|+|+|..+.+.+.+|+++.+.+.++++.+++.+.+.+.+.+++.||++++++.|++++.. +++.+..
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~  228 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA  228 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEE
Confidence            899999999999999999999999999999999998887678999999999999999999999999999852 3456667


Q ss_pred             EEeCCCCEEecCEEEEecCC
Q 021871          286 VKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       286 v~~~~G~~i~~d~vv~a~g~  305 (306)
                      |.+.+|+++++|.||+|+|.
T Consensus       229 v~~~~G~~i~~D~Vv~a~G~  248 (431)
T 1q1r_A          229 VLCEDGTRLPADLVIAGIGL  248 (431)
T ss_dssp             EEETTSCEEECSEEEECCCE
T ss_pred             EEeCCCCEEEcCEEEECCCC
Confidence            88999999999999999985

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=2.2e-31  Score=236.47  Aligned_cols=231  Identities=26%  Similarity=0.394  Sum_probs=190.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +++||+|||||++|+++|.+|++.|+ +.+|+|+|+++...|.++.....++....  ...             ..+. +
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~-------------~~~~-~   68 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGD--AEK-------------IRLD-C   68 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTHHHHHCC--GGG-------------SBCC-C
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCC-CCeEEEEECCCCCcccCCCCCHHHhCCCc--hhh-------------hhHH-H
Confidence            45899999999999999999999996 45699999998777765544432221110  000             0111 4


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCC-CCCCCCCEEEEccHHHHHHHHHhhhcCC
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK-IGGYLPGVHYIRDVADADALISSLEKAK  208 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~  208 (306)
                      +++.+++++.+++|..++.+.+.+.++++..+.||+||+|||+.+.. |++ ++.+ +++.+++...+...+.+.+..++
T Consensus        69 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~-~~i~~G~~-~~v~~~~~~~~~~~l~~~~~~~~  146 (408)
T 2gqw_A           69 KRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA-LPTLQGAT-MPVHTLRTLEDARRIQAGLRPQS  146 (408)
T ss_dssp             TTSCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CGGGTTCS-SCEEECCSHHHHHHHHTTCCTTC
T ss_pred             HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCC-CCccCCCC-CcEEEECCHHHHHHHHHHhhcCC
Confidence            56789999999889999998889999888889999999999998874 556 7755 77777777777766665556689


Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  288 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~  288 (306)
                      +++|||+|.+|+|+|..+.+.+.+|+++.+.+.++++.+++.+.+.+.+.++++||+++++++|++++ + +    .|++
T Consensus       147 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~-~----~v~~  220 (408)
T 2gqw_A          147 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D-G----VVLL  220 (408)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T-T----EEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C-C----EEEE
Confidence            99999999999999999999999999999999998866799999999999999999999999999998 2 2    4778


Q ss_pred             CCCCEEecCEEEEecCC
Q 021871          289 EDGSTIDADTVILLPYD  305 (306)
Q Consensus       289 ~~G~~i~~d~vv~a~g~  305 (306)
                      .+|+++++|.||+|+|.
T Consensus       221 ~~g~~i~~D~vi~a~G~  237 (408)
T 2gqw_A          221 DDGTRIAADMVVVGIGV  237 (408)
T ss_dssp             TTSCEEECSEEEECSCE
T ss_pred             CCCCEEEcCEEEECcCC
Confidence            89999999999999985

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=4.7e-31  Score=237.46  Aligned_cols=238  Identities=20%  Similarity=0.265  Sum_probs=186.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHh
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (306)
                      +||+|||||++|+++|++|++++ +..+|+|+|+++..+|..+.... +.........           ........++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~-~g~~V~vie~~~~~g~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~   69 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKY-PQAEISLIDKQATVGYLSGGLSA-YFNHTINELH-----------EARYITEEELR   69 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC-SSSEEEEECSSSCCSSCCC----------------------------CCCCHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhhC-cCCcEEEEECCCCCcccCccchh-hhcCCCCCHH-----------HhhcCCHHHHH
Confidence            69999999999999999999983 23399999999887765443322 1111000001           11234667788


Q ss_pred             hcCeEEEeCCcEEEEeCCCCEEEc---CCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCC
Q 021871          132 EKGIEMIYQDPVTSIDIEKQTLIT---NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  208 (306)
Q Consensus       132 ~~~v~~~~~~~v~~v~~~~~~v~~---~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  208 (306)
                      +.+++++++++|.+++...+.+.+   .++..+.||++|+|||+.+.. |++++.+.+++...+.+.+...+.+....++
T Consensus        70 ~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~-p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~  148 (452)
T 3oc4_A           70 RQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFS-TQIRGSQTEKLLKYKFLSGALAAVPLLENSQ  148 (452)
T ss_dssp             HTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCC-CCCBTTTCTTEEEGGGCC----CCHHHHTCS
T ss_pred             HCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCC-CCCCCCCCCCEEEeCCHHHHHHHHHHHhcCC
Confidence            899999999999999998887655   245589999999999998874 6677776777777766666666666666789


Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  288 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~  288 (306)
                      +++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++..+++.+.+.+.+.++++||+++++++|++++. +++.+ .|.+
T Consensus       149 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v-~v~~  226 (452)
T 3oc4_A          149 TVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEE-TANGI-VLET  226 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEE-CSSCE-EEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEc-cCCeE-EEEE
Confidence            999999999999999999999999999999999998767999999999999999999999999999996 45555 6888


Q ss_pred             CCCCEEecCEEEEecCCC
Q 021871          289 EDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       289 ~~G~~i~~d~vv~a~g~~  306 (306)
                      ++| ++++|.||+|+|..
T Consensus       227 ~~g-~i~aD~Vv~A~G~~  243 (452)
T 3oc4_A          227 SEQ-EISCDSGIFALNLH  243 (452)
T ss_dssp             SSC-EEEESEEEECSCCB
T ss_pred             CCC-EEEeCEEEECcCCC
Confidence            877 99999999999963

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.98  E-value=1e-31  Score=236.36  Aligned_cols=223  Identities=22%  Similarity=0.332  Sum_probs=186.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      .++.+|+|||||+||+++|..|...+.   +|+|+|+++..+|.++.+.. ++... ....           .......+
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~---~itlie~~~~~~y~~~~l~~-~l~g~-~~~~-----------~l~~~~~~   70 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCD---DITMINSEKYLPYYRPRLNE-IIAKN-KSID-----------DILIKKND   70 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCS---CEEEECSSSSCCBCGGGHHH-HHHSC-CCGG-----------GTBSSCHH
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCC---EEEEEECCCCCCcccChhhH-HHcCC-CCHH-----------HccCCCHH
Confidence            346799999999999999999955554   99999999988887666554 22111 1111           11356778


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCC
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  208 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  208 (306)
                      ++++.+++++++++|.+++.+.+.+.+++++.+.||+||+|||+.+.. |++++.+  ++..++...+...+.+.+..++
T Consensus        71 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~-p~i~G~~--~v~~~~~~~d~~~l~~~l~~~~  147 (385)
T 3klj_A           71 WYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANK-IKVPHAD--EIFSLYSYDDALKIKDECKNKG  147 (385)
T ss_dssp             HHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CCCTTCS--CEECCSSHHHHHHHHHHHHHHS
T ss_pred             HHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCC-CCCCCCC--CeEEeCCHHHHHHHHHHhhcCC
Confidence            889999999999999999999999999999999999999999998874 5566654  7777777888877777777789


Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  288 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~  288 (306)
                      +++|||+|.+|+|+|..+.+.+.+|+++.+.+.++++.+++.+.+.+.+.++++||++++++.|+++             
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i-------------  214 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM-------------  214 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-------------
Confidence            9999999999999999999999999999999999988789999999999999999999999888666             


Q ss_pred             CCCCEEecCEEEEecCC
Q 021871          289 EDGSTIDADTVILLPYD  305 (306)
Q Consensus       289 ~~G~~i~~d~vv~a~g~  305 (306)
                        |+++++|.||+|+|.
T Consensus       215 --g~~~~~D~vv~a~G~  229 (385)
T 3klj_A          215 --GDLIRSSCVITAVGV  229 (385)
T ss_dssp             --HHHHHHSEEEECCCE
T ss_pred             --CeEEecCeEEECcCc
Confidence              567899999999985

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.97  E-value=1.6e-30  Score=229.29  Aligned_cols=239  Identities=21%  Similarity=0.304  Sum_probs=189.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +++||+|||||++|+++|.+|++.|. +.+|+++|++....|.++.+...+  ...      .....+.    ...+..+
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~g~~~~~~~l~~~~--~~~------~~~~~~~----~~~~~~~   69 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDG-ETPLLMITADDGRSYSKPMLSTGF--SKN------KDADGLA----MAEPGAM   69 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCS-SSCEEEECSSCCCEECGGGGGGTT--TTT------CCHHHHE----EECHHHH
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCC-CCCEEEEECCCCCccCcccccHHH--hCC------CCHHHhh----ccCHHHH
Confidence            35899999999999999999999985 457999999875544433322211  000      0000100    1133455


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCe
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  209 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  209 (306)
                      +++.+++++.++++..++...+.+.+.+ ..+.||++|+|||+.+.. |++++.+.+++...+++.+...+...+..+++
T Consensus        70 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~~-p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  147 (384)
T 2v3a_A           70 AEQLNARILTHTRVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPIR-VPVEGDAQDALYPINDLEDYARFRQAAAGKRR  147 (384)
T ss_dssp             HHHTTCEEECSCCCCEEEGGGTEEEETT-EEEECSEEEECCCEEECC-CCCBSTTTTCEEECSSHHHHHHHHHHHTTCCE
T ss_pred             HHhCCcEEEeCCEEEEEECCCCEEEECC-cEEECCEEEEeCCCCcCC-CCCCCcCcCCEEEECCHHHHHHHHHhhccCCe
Confidence            6788999998888999998778888765 469999999999998874 56777555677777778877777777777999


Q ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC
Q 021871          210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  289 (306)
Q Consensus       210 v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~  289 (306)
                      ++|+|+|.+|+|+|..+.+.+.+|+++.+.+.+++...++.+.+.+.+.+++.||+++++++|++++.+ ++.+ .|.+.
T Consensus       148 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~  225 (384)
T 2v3a_A          148 VLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKA-GEGL-EAHLS  225 (384)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEE-TTEE-EEEET
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEec-CCEE-EEEEC
Confidence            999999999999999999999999999999998887668999999999999999999999999999863 3333 68888


Q ss_pred             CCCEEecCEEEEecCC
Q 021871          290 DGSTIDADTVILLPYD  305 (306)
Q Consensus       290 ~G~~i~~d~vv~a~g~  305 (306)
                      +|+++++|.||+|+|.
T Consensus       226 ~g~~i~~d~vv~a~G~  241 (384)
T 2v3a_A          226 DGEVIPCDLVVSAVGL  241 (384)
T ss_dssp             TSCEEEESEEEECSCE
T ss_pred             CCCEEECCEEEECcCC
Confidence            9989999999999985

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.97  E-value=2.6e-30  Score=233.94  Aligned_cols=246  Identities=24%  Similarity=0.360  Sum_probs=174.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ++||+|||||++||++|++|++++ +..+|+|+|+++...|..+.++. ++.........+..+.    .....+...+.
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~-~g~~Vtvie~~~~~~~~~~gl~~-~~~g~~~~~~~~~~~~----~~~~~~~~~~~   76 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLD-PEAHVTMIDQASRISYGGCGIPY-YVSGEVSNIESLQATP----YNVVRDPEFFR   76 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHC-TTSEEEEECCC--------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhC-cCCCEEEEECCCcccccccccch-hhcCCCCchHHhcccc----chhccCHHHHh
Confidence            479999999999999999999993 23399999999887766544332 1111000000000000    00012233333


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCC---Cc--EEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhh
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  205 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~---g~--~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  205 (306)
                      ++.+++++++++|..++...+.+.+.+   +.  .+.||++|+|||+.+. .|++++.+.+++..+....+...+.+.+.
T Consensus        77 ~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~l~  155 (472)
T 3iwa_A           77 INKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKAN-RPPVEGMDLAGVTPVTNLDEAEFVQHAIS  155 (472)
T ss_dssp             ----CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCSCTTTTSBTEEECCSHHHHHHHHHHCC
T ss_pred             hhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHhh
Confidence            457899999999999999888776654   55  7899999999999877 46677766777877777777766665553


Q ss_pred             --cCCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCc
Q 021871          206 --KAKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  282 (306)
Q Consensus       206 --~~~~v~viG~g~~a~e~a~~l~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~  282 (306)
                        .+++++|+|+|.+++|+|..+... +.+|+++.+.+.++++.+++.+.+.+.+.+++.||+++++++|++++. +++.
T Consensus       156 ~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~  234 (472)
T 3iwa_A          156 AGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEG-ENGK  234 (472)
T ss_dssp             TTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSB
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEc-cCCe
Confidence              478999999999999999999999 999999999999988558999999999999999999999999999996 4566


Q ss_pred             EEEEEeCCCCEEecCEEEEecCC
Q 021871          283 VAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       283 v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      + .+.+.+|+++++|.||+|+|.
T Consensus       235 v-~v~~~~g~~i~aD~Vv~a~G~  256 (472)
T 3iwa_A          235 V-ARVITDKRTLDADLVILAAGV  256 (472)
T ss_dssp             E-EEEEESSCEEECSEEEECSCE
T ss_pred             E-EEEEeCCCEEEcCEEEECCCC
Confidence            5 377888989999999999985

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.97  E-value=2e-30  Score=226.96  Aligned_cols=225  Identities=23%  Similarity=0.394  Sum_probs=181.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..||+|||||++|+++|..|++.|    +|+|+|+++...|.++.+.. ++.. .   .   .+..     .......++
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g----~V~lie~~~~~~~~~~~l~~-~~~g-~---~---~~~~-----~~~~~~~~~   70 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY----EVTVIDKEPVPYYSKPMLSH-YIAG-F---I---PRNR-----LFPYSLDWY   70 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS----EEEEECSSSSCCCCSTTHHH-HHTT-S---S---CGGG-----GCSSCHHHH
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC----CEEEEECCCCCccccchhHH-HHhC-C---C---CHHH-----hccCCHHHH
Confidence            359999999999999999998876    89999999876665444332 1110 0   0   0111     123456778


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeE
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  210 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v  210 (306)
                      ++.+++++.+++|..++...+.+. .++..+.||+||+|||+.+.. |++++  .+++..++...+...+.+.+..++++
T Consensus        71 ~~~~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~~-p~i~G--~~~v~~~~~~~~~~~l~~~~~~~~~v  146 (367)
T 1xhc_A           71 RKRGIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARARE-PQIKG--KEYLLTLRTIFDADRIKESIENSGEA  146 (367)
T ss_dssp             HHHTEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEECC-CCSBT--GGGEECCCSHHHHHHHHHHHHHHSEE
T ss_pred             HhCCcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCCC-CCCCC--cCCEEEEcCHHHHHHHHHHhhcCCcE
Confidence            889999999988999999888887 677789999999999998874 55565  45666666666666665555556899


Q ss_pred             EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC
Q 021871          211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  290 (306)
Q Consensus       211 ~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~  290 (306)
                      +|||+|.+|+|+|..+.+.+.+|+++.+.+.+++  +++.+.+.+.+.++++||+++++++|++++.  +    +|++++
T Consensus       147 vViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~----~v~~~~  218 (367)
T 1xhc_A          147 IIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEANE--E----GVLTNS  218 (367)
T ss_dssp             EEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEECS--S----EEEETT
T ss_pred             EEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--e----EEEECC
Confidence            9999999999999999999999999999999888  7999999999999999999999999999983  2    477888


Q ss_pred             CCEEecCEEEEecCC
Q 021871          291 GSTIDADTVILLPYD  305 (306)
Q Consensus       291 G~~i~~d~vv~a~g~  305 (306)
                      |+ +++|.||+|+|.
T Consensus       219 g~-i~~D~vi~a~G~  232 (367)
T 1xhc_A          219 GF-IEGKVKICAIGI  232 (367)
T ss_dssp             EE-EECSCEEEECCE
T ss_pred             CE-EEcCEEEECcCC
Confidence            87 999999999985

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.97  E-value=4.3e-30  Score=231.27  Aligned_cols=238  Identities=23%  Similarity=0.318  Sum_probs=189.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           52 REFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +||+|||||++|+++|.+|++.  |.   +|+|+|+++...|..+.+.. ++..... ..   .+..     ....+...
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~---~V~lie~~~~~~~~~~~~~~-~~~g~~~-~~---~~~~-----~~~~~~~~   67 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDA---DVTAYEMNDNISFLSCGIAL-YLGKEIK-NN---DPRG-----LFYSSPEE   67 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTC---EEEEEESSSCCCBCGGGHHH-HHTTCBG-GG---CGGG-----GBSCCHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCC---cEEEEECCCCCCcccccchh-hhcCCcc-cC---CHHH-----hhhcCHHH
Confidence            5899999999999999999998  65   99999998866553322110 0000000 00   0000     12345667


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCC-----CcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhh
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNS-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  204 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~-----g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  204 (306)
                      +++.+++++.++++..++.+...+.+.+     +..+.||++|+|+|+.+.. |++++.+.+++..++.+.+...+.+..
T Consensus        68 ~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~-p~i~g~~~~~v~~~~~~~~~~~~~~~~  146 (452)
T 2cdu_A           68 LSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTV-PPIPGIDSSRVYLCKNYNDAKKLFEEA  146 (452)
T ss_dssp             HHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECC-CCCTTTTSTTEEECSSHHHHHHHHHHG
T ss_pred             HHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCC-CCCCCCCCCCEEEeCcHHHHHHHHHHh
Confidence            8889999988988999998777776643     4579999999999998874 567776667788888888888888877


Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEE
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~  284 (306)
                      ..+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.++++.+++.+.+.+.+.++++||+++++++|++++. +++++.
T Consensus       147 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~v~  225 (452)
T 2cdu_A          147 PKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEE-VDDEII  225 (452)
T ss_dssp             GGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEE-ETTEEE
T ss_pred             ccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEc-CCCeEE
Confidence            8899999999999999999999999999999999999988668999999999999999999999999999985 356554


Q ss_pred             EEEeCCCCEEecCEEEEecCC
Q 021871          285 AVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       285 ~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .+.+ +|+++++|.||+|+|.
T Consensus       226 ~v~~-~g~~i~~D~vv~a~G~  245 (452)
T 2cdu_A          226 TKTL-DGKEIKSDIAILCIGF  245 (452)
T ss_dssp             EEET-TSCEEEESEEEECCCE
T ss_pred             EEEe-CCCEEECCEEEECcCC
Confidence            5655 6789999999999985

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.97  E-value=1.6e-29  Score=234.65  Aligned_cols=258  Identities=19%  Similarity=0.283  Sum_probs=189.4

Q ss_pred             ccCccccccccceeeecccCCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCC
Q 021871           29 HSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP  108 (306)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~  108 (306)
                      -..||...++....... ..++++||+|||||++||++|++|++++ +..+|+|+|+++..+|..+.++. ++.......
T Consensus        15 ~~~np~~g~e~~~~~~~-~~~~~~~VvIIGgG~AGl~aA~~L~~~~-~g~~V~vie~~~~~~~~~~~lp~-~~~g~~~~~   91 (588)
T 3ics_A           15 MTGGQQMGRTLYDDDDK-DRWGSRKIVVVGGVAGGASVAARLRRLS-EEDEIIMVERGEYISFANCGLPY-YIGGVITER   91 (588)
T ss_dssp             --------------------CCCCEEEEECCSHHHHHHHHHHHHHC-SSSEEEEECSSSCSSBCGGGHHH-HHTTSSCCG
T ss_pred             cccchhcCccccCcccC-CcccCCCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEECCCCccccCCCCch-hhcCcCCCh
Confidence            45677766665543222 2356689999999999999999999993 23399999999887766543322 111100000


Q ss_pred             CCCCCcccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcC---CCc--EEecCcEEEeeCCCCccCCCCCCC
Q 021871          109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN---SGK--LLKYGSLIVATGCTASRFPEKIGG  183 (306)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~---~g~--~~~~~~lila~G~~~~~~~~~~~~  183 (306)
                      .          .....++..+.++.+++++++++|.+++.+...+.+.   ++.  .+.||++|+|||+.+.. |++++.
T Consensus        92 ~----------~~~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~-p~i~G~  160 (588)
T 3ics_A           92 Q----------KLLVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIV-PSIPGI  160 (588)
T ss_dssp             G----------GGBSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC-CCCTTT
T ss_pred             H----------HhhccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCC-CCCCCc
Confidence            0          0012345556678899999999999999988876653   455  78999999999998774 567775


Q ss_pred             -CCCCEEEEccHHHHHHHHHhh--hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH
Q 021871          184 -YLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  260 (306)
Q Consensus       184 -~~~g~~~~~~~~~~~~~~~~~--~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (306)
                       +.+++...+.+.+...+...+  ..+++++|||+|.+|+|+|..+...+.+|+++.+.+.+++. +++.+.+.+.+.++
T Consensus       161 ~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~  239 (588)
T 3ics_A          161 EEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMK  239 (588)
T ss_dssp             TTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHH
T ss_pred             ccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHHHHHH
Confidence             567777777777776665544  35899999999999999999999999999999999999887 78999999999999


Q ss_pred             HcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          261 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       261 ~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.||++++++.|++++.. ++   +|.+.+|+++++|.||+|+|.
T Consensus       240 ~~GV~i~~~~~v~~i~~~-~~---~v~~~~g~~i~~D~Vi~a~G~  280 (588)
T 3ics_A          240 NHDVELVFEDGVDALEEN-GA---VVRLKSGSVIQTDMLILAIGV  280 (588)
T ss_dssp             HTTCEEECSCCEEEEEGG-GT---EEEETTSCEEECSEEEECSCE
T ss_pred             HcCCEEEECCeEEEEecC-CC---EEEECCCCEEEcCEEEEccCC
Confidence            999999999999999853 22   477889999999999999985

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.97  E-value=2.3e-29  Score=232.76  Aligned_cols=239  Identities=18%  Similarity=0.309  Sum_probs=186.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHh
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (306)
                      +||+|||||++||++|++|++++ +..+|+|+|+++..+|..+.++. ++........          .........+.+
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~-~~~~V~lie~~~~~~~~~~~l~~-~~~~~~~~~~----------~~~~~~~~~~~~   69 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLS-ETAEIIMFERGEYVSFANCGLPY-HISGEIAQRS----------ALVLQTPESFKA   69 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHC-SSSEEEEECSSSCSSBCGGGHHH-HHTSSSCCGG----------GGBCCCHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhhC-cCCCEEEEECCCCccccccCchH-HhcCCcCChH----------HhhccCHHHHHH
Confidence            69999999999999999999994 24499999999887765443332 1111000000          000123344445


Q ss_pred             hcCeEEEeCCcEEEEeCCCCEEEcCC---Cc--EEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhh--
Q 021871          132 EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--  204 (306)
Q Consensus       132 ~~~v~~~~~~~v~~v~~~~~~v~~~~---g~--~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--  204 (306)
                      +.+++++++++|.+++...+.+.+.+   +.  .+.||+||+|||+.+.. |++++.+.+++...+.+.+.+.+.+.+  
T Consensus        70 ~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~-p~ipG~~~~~v~~~~~~~~~~~l~~~~~~  148 (565)
T 3ntd_A           70 RFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIV-PPIPGVDNPLTHSLRNIPDMDRILQTIQM  148 (565)
T ss_dssp             HHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC-CCCTTCCSTTEECCSSHHHHHHHHHHHHH
T ss_pred             hcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCC-CCCCCCCCCCEEEeCCHHHHHHHHHHHhh
Confidence            58999999999999999888766543   43  78999999999998774 567776667777777777776666543  


Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC------
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG------  278 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~------  278 (306)
                      ..+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.++++||++++++.|++++.+      
T Consensus       149 ~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~  227 (565)
T 3ntd_A          149 NNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVA  227 (565)
T ss_dssp             TTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-cCHHHHHHHHHHHHHCCCEEEeCCeEEEEecccccccc
Confidence            34789999999999999999999999999999999998884 78999999999999999999999999999862      


Q ss_pred             ------------CCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          279 ------------SDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       279 ------------~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                  +++.+ .+.+.+|+++++|.||+|+|.
T Consensus       228 ~~~~~~~~~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~  265 (565)
T 3ntd_A          228 SDAAGEDTAHQHIKGHL-SLTLSNGELLETDLLIMAIGV  265 (565)
T ss_dssp             CGGGTCCCTTCCTTCEE-EEEETTSCEEEESEEEECSCE
T ss_pred             ccccccccccccCCCcE-EEEEcCCCEEEcCEEEECcCC
Confidence                        24444 577788989999999999985

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.97  E-value=3e-29  Score=225.53  Aligned_cols=237  Identities=25%  Similarity=0.351  Sum_probs=179.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +++||+|||||++|+++|++|++.+ +..+|+|+|+++...+....++. ++... ....           .......+.
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~-~~~~V~vie~~~~~~~~~~~~p~-~~~~~-~~~~-----------~~~~~~~~~   67 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLK-PEWDVKVFEATEWVSHAPCGIPY-VVEGL-STPD-----------KLMYYPPEV   67 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHC-TTSEEEEECSSSCCC-------------------------------------CT
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhC-cCCCEEEEECCCccccCCcCCcc-ccCCC-CCHH-----------HhhhcCHHH
Confidence            3579999999999999999999984 23499999999876554322221 11000 0000           001222233


Q ss_pred             H-hhcCeEEEeCCcEEEEeCCCCEEEcCCC-cEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhh--
Q 021871          130 Y-KEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--  205 (306)
Q Consensus       130 ~-~~~~v~~~~~~~v~~v~~~~~~v~~~~g-~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--  205 (306)
                      + ++.+++++++++|..++.....+.++++ ..+.||+||+|||+.+. .|++++.+.+++...+...+...+.+...  
T Consensus        68 ~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~  146 (449)
T 3kd9_A           68 FIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQ-VPAIEGVNLKGVFTADLPPDALAIREYMEKY  146 (449)
T ss_dssp             HHHHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEEC-CCSCBTTTSTTEECSCSTHHHHHHHHHHSSS
T ss_pred             HHHhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhc
Confidence            4 6789999999999999988888888777 48999999999999887 46677776777776666666666665554  


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~  285 (306)
                      .+++++|||+|.+|+|+|..+.+.+.+|+++.+.+++++..+++.+.+.+.+.++++ |+++.++.|.+++. ++ .+..
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~-~~-~v~~  223 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEG-EE-RVEK  223 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEEC-SS-SCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEec-cC-cEEE
Confidence            678999999999999999999999999999999999998767999999999999998 99999999999985 23 4433


Q ss_pred             EEeCCCCEEecCEEEEecCC
Q 021871          286 VKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       286 v~~~~G~~i~~d~vv~a~g~  305 (306)
                      + ..+|+++++|.||+|+|.
T Consensus       224 v-~~~g~~i~~D~Vv~a~G~  242 (449)
T 3kd9_A          224 V-VTDAGEYKAELVILATGI  242 (449)
T ss_dssp             E-EETTEEEECSEEEECSCE
T ss_pred             E-EeCCCEEECCEEEEeeCC
Confidence            4 445678999999999985

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.97  E-value=7e-30  Score=231.83  Aligned_cols=253  Identities=23%  Similarity=0.391  Sum_probs=187.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCC------CCCCCccc---ccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP------ARLPGFHT---CVG  119 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~~~  119 (306)
                      +..+||+|||||++|+++|..|++.+. ..+|+|||+++..+|.++...+.++.......      ..++....   ...
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~-g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQP   87 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccc
Confidence            445799999999999999999998842 44999999998877776544333322211000      00000000   000


Q ss_pred             CCCCcCChhH--HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC----CCCEEEEcc
Q 021871          120 SGGERQTPEW--YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIRD  193 (306)
Q Consensus       120 ~~~~~~~~~~--~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~----~~g~~~~~~  193 (306)
                      ...+.....+  +.+.+++++++++|..++...+.+.+++|..+.||+||+|||+.+..+| .++..    .+++..++.
T Consensus        88 ~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~-~~~~~~~~~~~~v~~~~~  166 (493)
T 1m6i_A           88 PSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLS-AIDRAGAEVKSRTTLFRK  166 (493)
T ss_dssp             GGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCH-HHHTSCHHHHHTEEECCS
T ss_pred             hHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCC-CcccccccccCceEEEcC
Confidence            0000000011  2356899999999999999888999999989999999999999887533 33311    346777777


Q ss_pred             HHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHh----CCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcC
Q 021871          194 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  269 (306)
Q Consensus       194 ~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~  269 (306)
                      ..+...+......+++++|||+|.+|+|+|..+.+    .+.+|+++.+.+.++++.+++.+.+.+.+.++++||+++++
T Consensus       167 ~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~  246 (493)
T 1m6i_A          167 IGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPN  246 (493)
T ss_dssp             HHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECS
T ss_pred             HHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeC
Confidence            77777777766779999999999999999999987    46789999998887777678899999999999999999999


Q ss_pred             ceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          270 ASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       270 ~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.|++++. +++.+ .|++.+|+++++|.||+|+|.
T Consensus       247 ~~V~~i~~-~~~~~-~v~l~dG~~i~aD~Vv~a~G~  280 (493)
T 1m6i_A          247 AIVQSVGV-SSGKL-LIKLKDGRKVETDHIVAAVGL  280 (493)
T ss_dssp             CCEEEEEE-ETTEE-EEEETTSCEEEESEEEECCCE
T ss_pred             CEEEEEEe-cCCeE-EEEECCCCEEECCEEEECCCC
Confidence            99999985 34444 688999999999999999985

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.97  E-value=4.2e-29  Score=224.44  Aligned_cols=235  Identities=20%  Similarity=0.284  Sum_probs=183.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           52 REFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +||+|||||++|+++|..|++.  |.   +|+|+|+++..+|..+.+.. ++...      ......     .......+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~---~V~lie~~~~~~~~~~~~~~-~~~~~------~~~~~~-----~~~~~~~~   65 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDA---EIQWYEKGDFISFLSAGMQL-YLEGK------VKDVNS-----VRYMTGEK   65 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTS---EEEEEESSSSSSBCGGGHHH-HHTTS------SCCGGG-----SBSCCHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCC---eEEEEECCCccCcccccchh-hhcCc------cCCHHH-----hhcCCHHH
Confidence            4899999999999999999998  55   99999998876543222111 11000      001111     12345677


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCC---Cc--EEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhh
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  204 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~---g~--~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  204 (306)
                      +++.+++++.+..+..++.+.+.+.+.+   |+  .+.||++|+|||+.+.. |++|+.+.+++.+.++..+...+.+.+
T Consensus        66 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~-p~i~G~~~~~v~~~~~~~~~~~l~~~~  144 (447)
T 1nhp_A           66 MESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE-LDIPGKDLDNIYLMRGRQWAIKLKQKT  144 (447)
T ss_dssp             HHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC-CCSTTTTSBSEECCCHHHHHHHHHHHH
T ss_pred             HHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCC-CCCCCCCCCCeEEECCHHHHHHHHHHh
Confidence            8888999988999999998887776643   54  48999999999998874 567776566776666666666666655


Q ss_pred             h--cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCc
Q 021871          205 E--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  282 (306)
Q Consensus       205 ~--~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~  282 (306)
                      .  .+++++|||+|.+|+++|..+.+.+.+|+++.+.+.+++..+++.+.+.+.+.+++.||+++++++|++++. + +.
T Consensus       145 ~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~-~~  222 (447)
T 1nhp_A          145 VDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEG-D-GR  222 (447)
T ss_dssp             TCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEEC-S-SB
T ss_pred             hhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEc-c-Cc
Confidence            5  689999999999999999999999999999999999888557899999999999999999999999999995 3 44


Q ss_pred             EEEEEeCCCCEEecCEEEEecCC
Q 021871          283 VAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       283 v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+.+ +|+++++|.||+|+|.
T Consensus       223 v~~v~~-~~~~i~~d~vi~a~G~  244 (447)
T 1nhp_A          223 VQKVVT-DKNAYDADLVVVAVGV  244 (447)
T ss_dssp             CCEEEE-SSCEEECSEEEECSCE
T ss_pred             EEEEEE-CCCEEECCEEEECcCC
Confidence            434666 4568999999999985

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.97  E-value=3.7e-29  Score=226.64  Aligned_cols=256  Identities=22%  Similarity=0.343  Sum_probs=181.0

Q ss_pred             ccCccccccccceeeecccCCCCCcEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCCCCCCCCCccccccccCCCC
Q 021871           29 HSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAPYERPALTKGYLFPLDK  106 (306)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~  106 (306)
                      -..||...++..... ......++||+|||||++|+++|.+|++.  |.   +|+|+|+++...|..+.++. ++...  
T Consensus        15 ~~~np~~g~~~~~~~-~~~~~~~~dvvIIG~G~aGl~aA~~l~~~~~g~---~V~lie~~~~~~~~~~~~~~-~~~~~--   87 (480)
T 3cgb_A           15 MTGGQQMGRTLYDDD-DKDRWGSMNYVIIGGDAAGMSAAMQIVRNDENA---NVVTLEKGEIYSYAQCGLPY-VISGA--   87 (480)
T ss_dssp             -----------------------CEEEEECCSHHHHHHHHHHHHHCTTC---EEEEECSSSCCSBCGGGHHH-HHTTS--
T ss_pred             ccchhhhcccccCCC-CcCccccceEEEECCCHHHHHHHHHHHhhCcCC---cEEEEECCCCCCCCCCCcch-hhcCC--
Confidence            455666655543221 11122347999999999999999999997  55   99999998876554332221 11110  


Q ss_pred             CCCCCCCcccccCCCCCcCChhHH-hhcCeEEEeCCcEEEEeCCCCEEEcC---CCc--EEecCcEEEeeCCCCccCCCC
Q 021871          107 KPARLPGFHTCVGSGGERQTPEWY-KEKGIEMIYQDPVTSIDIEKQTLITN---SGK--LLKYGSLIVATGCTASRFPEK  180 (306)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~v~~v~~~~~~v~~~---~g~--~~~~~~lila~G~~~~~~~~~  180 (306)
                          ...+..+     .......+ ++.+++++.+.+|..++.+.+.+.+.   +|+  .+.||++|+|+|+.+.. |++
T Consensus        88 ----~~~~~~l-----~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~-p~i  157 (480)
T 3cgb_A           88 ----IASTEKL-----IARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVM-PEW  157 (480)
T ss_dssp             ----SSCGGGG-----BSSCHHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC-CCC
T ss_pred             ----cCCHHHh-----hhcCHHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccC-CCC
Confidence                0011111     12344555 44599999888999999887776654   365  79999999999998874 567


Q ss_pred             CCCCCCCEEEEccHHHHHHHHHhhh--cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHH
Q 021871          181 IGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL  258 (306)
Q Consensus       181 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  258 (306)
                      ++.+.+++.++....+...+.+.+.  .+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.
T Consensus       158 ~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~  236 (480)
T 3cgb_A          158 EGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-YDGDMAEYIYKE  236 (480)
T ss_dssp             BTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-SCHHHHHHHHHH
T ss_pred             CCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-CCHHHHHHHHHH
Confidence            7765567776666666666655554  6899999999999999999999999999999999988874 789999999999


Q ss_pred             HHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       259 ~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +++.||+++++++|++++.  ++.+..+.+++ +++++|.||+|+|.
T Consensus       237 l~~~Gv~i~~~~~v~~i~~--~~~v~~v~~~~-~~i~~D~vi~a~G~  280 (480)
T 3cgb_A          237 ADKHHIEILTNENVKAFKG--NERVEAVETDK-GTYKADLVLVSVGV  280 (480)
T ss_dssp             HHHTTCEEECSCCEEEEEE--SSBEEEEEETT-EEEECSEEEECSCE
T ss_pred             HHHcCcEEEcCCEEEEEEc--CCcEEEEEECC-CEEEcCEEEECcCC
Confidence            9999999999999999985  34454566654 58999999999985

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.97  E-value=2.2e-29  Score=225.28  Aligned_cols=230  Identities=18%  Similarity=0.237  Sum_probs=180.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhh
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (306)
                      +|+|||||+||++||.+|+++|. +.+|+|+|+++...|.++.++. ++........          .........++++
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~-~~~~~~~~~~----------~~~~~~~~~~~~~   69 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPY-VIGEVVEDRR----------YALAYTPEKFYDR   69 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCS-SSCEEEEESSSCSSBCGGGHHH-HHTTSSCCGG----------GTBCCCHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CCcEEEEeCCCCCCCCcchhHH-HHcCCccchh----------hhhhcCHHHHHHh
Confidence            69999999999999999999984 6689999999887776544332 1111000000          0001233466788


Q ss_pred             cCeEEEeCCcEEEEeCCCCEEEcCC-----CcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhh--h
Q 021871          133 KGIEMIYQDPVTSIDIEKQTLITNS-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--E  205 (306)
Q Consensus       133 ~~v~~~~~~~v~~v~~~~~~v~~~~-----g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~  205 (306)
                      .+++++.+++|..++...+.+.+.+     +..+.||+||+|||+.++. |.+++   ++.+.++.+.++..+...+  .
T Consensus        70 ~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~-p~i~g---~~~~~~~~~~~~~~l~~~~~~~  145 (437)
T 4eqs_A           70 KQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANS-LGFES---DITFTLRNLEDTDAIDQFIKAN  145 (437)
T ss_dssp             HCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECC-CCCCC---TTEECCSSHHHHHHHHHHHHHH
T ss_pred             cCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccc-ccccC---ceEEeeccHHHHHHHHHhhhcc
Confidence            8999999999999999887665432     2368999999999998874 33332   4556666677776665543  3


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~  285 (306)
                      .+++++|+|+|.+|+|+|..+.+.+.+|+++.+.+++++. +++.+.+.+.+.++++||++++++.|++++..      .
T Consensus       146 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~------~  218 (437)
T 4eqs_A          146 QVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEINAINGN------E  218 (437)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGGGHHHHHHHHHTTCCEEESCCEEEEETT------E
T ss_pred             CCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchhHHHHHHHhhccceEEEeccEEEEecCC------e
Confidence            4789999999999999999999999999999999999886 78889999999999999999999999998842      5


Q ss_pred             EEeCCCCEEecCEEEEecCC
Q 021871          286 VKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       286 v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.+++|+++++|.||+|+|.
T Consensus       219 v~~~~g~~~~~D~vl~a~G~  238 (437)
T 4eqs_A          219 ITFKSGKVEHYDMIIEGVGT  238 (437)
T ss_dssp             EEETTSCEEECSEEEECCCE
T ss_pred             eeecCCeEEeeeeEEEEece
Confidence            78899999999999999985

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.96  E-value=2.9e-28  Score=221.06  Aligned_cols=231  Identities=21%  Similarity=0.330  Sum_probs=170.4

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCCh
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (306)
                      ..++++|||||||+||+++|++|.+.++   +|+|||+++.+.|. |.++. ....  .    +. ...+     ...+.
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~~~~---~VtLId~~~~~~~~-PlL~~-va~G--~----l~-~~~i-----~~p~~  101 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDTKKY---NVSIISPRSYFLFT-PLLPS-APVG--T----VD-EKSI-----IEPIV  101 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCTTTC---EEEEEESSSEEECG-GGGGG-TTTT--S----SC-GGGG-----EEEHH
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhhCCC---cEEEECCCCCcccc-cchhH-Hhhc--c----cc-HHHh-----hhhHH
Confidence            3456799999999999999999988776   99999999876553 22211 0000  0    00 0000     01122


Q ss_pred             hHH--hhcCeEEEeCCcEEEEeCCCCEEEcC--------------------CCcEEecCcEEEeeCCCCccCCCCCCCCC
Q 021871          128 EWY--KEKGIEMIYQDPVTSIDIEKQTLITN--------------------SGKLLKYGSLIVATGCTASRFPEKIGGYL  185 (306)
Q Consensus       128 ~~~--~~~~v~~~~~~~v~~v~~~~~~v~~~--------------------~g~~~~~~~lila~G~~~~~~~~~~~~~~  185 (306)
                      ...  .+.+++++.. +|++||.+.+.+.+.                    ++..+.||+||+|+|+.+..++      +
T Consensus       102 ~~~~~~~~~v~~~~~-~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~------i  174 (502)
T 4g6h_A          102 NFALKKKGNVTYYEA-EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFG------I  174 (502)
T ss_dssp             HHHTTCSSCEEEEEE-EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTT------C
T ss_pred             HHHHhhcCCeEEEEE-EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCC------c
Confidence            222  2346887755 899999988877642                    3568999999999999988644      4


Q ss_pred             CCE----EEEccHHHHHHHHHhhh-----------------cCCeEEEEcCCHHHHHHHHHHHhCC--------------
Q 021871          186 PGV----HYIRDVADADALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGWK--------------  230 (306)
Q Consensus       186 ~g~----~~~~~~~~~~~~~~~~~-----------------~~~~v~viG~g~~a~e~a~~l~~~~--------------  230 (306)
                      ||+    ..++.+.++..+.+.+.                 ...+++|+|+|++|+|+|.++.+..              
T Consensus       175 pG~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~  254 (502)
T 4g6h_A          175 PGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEE  254 (502)
T ss_dssp             TTHHHHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHH
T ss_pred             cCcccccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhccccccc
Confidence            553    45666777665544331                 1347999999999999999987642              


Q ss_pred             CcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC----EEecCEEEEecCC
Q 021871          231 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS----TIDADTVILLPYD  305 (306)
Q Consensus       231 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~----~i~~d~vv~a~g~  305 (306)
                      .+|+++.+.+++++. +++.+.+.+.+.|+++||++++++.|++++  +++.+..+...+|+    ++++|.||||+|.
T Consensus       255 ~~V~lve~~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~--~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv  330 (502)
T 4g6h_A          255 VQIHLVEALPIVLNM-FEKKLSSYAQSHLENTSIKVHLRTAVAKVE--EKQLLAKTKHEDGKITEETIPYGTLIWATGN  330 (502)
T ss_dssp             CEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEEC--SSEEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred             ceeEEeccccccccC-CCHHHHHHHHHHHHhcceeeecCceEEEEe--CCceEEEEEecCcccceeeeccCEEEEccCC
Confidence            579999999999986 899999999999999999999999999998  56666566777774    6999999999985

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.95  E-value=5e-28  Score=209.52  Aligned_cols=233  Identities=17%  Similarity=0.238  Sum_probs=161.2

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCCh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP  127 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  127 (306)
                      .+++||+|||||++||++|+.|++.|+   +|+|+|+.+.....    .+|.+... .....+|++.. ........++.
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~vie~~~~~~~~----~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   91 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEI---KPILYEGMMANGIA----AGGQLTTT-TEIENFPGFPDGLTGSELMDRMR   91 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTBC----TTCGGGGS-SEECCSTTCTTCEEHHHHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCCCCCCC----cCcccccc-hhhcccCCCcccCCHHHHHHHHH
Confidence            456899999999999999999999998   99999997622111    12222111 01111222221 11112234556


Q ss_pred             hHHhhcCeEEEeCCcEEEEeCCCCEEE--c---CCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHH
Q 021871          128 EWYKEKGIEMIYQDPVTSIDIEKQTLI--T---NSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADA  199 (306)
Q Consensus       128 ~~~~~~~v~~~~~~~v~~v~~~~~~v~--~---~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~  199 (306)
                      ..+++.+++++.++ |..++.+...+.  +   .++..+.||++|+|+|..+.. |.+++..   ..++..      ...
T Consensus        92 ~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~-~~~~g~~~~~~~~~~~------~~~  163 (338)
T 3itj_A           92 EQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKR-MHLPGEETYWQKGISA------CAV  163 (338)
T ss_dssp             HHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECC-CCCTTHHHHBTTTEES------CHH
T ss_pred             HHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCC-CCCCCchhccCccEEE------chh
Confidence            66777899999886 999988765443  3   356689999999999998763 4444321   122222      122


Q ss_pred             HHHh--hhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHc-CCEEEcCceEEEEE
Q 021871          200 LISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLE  276 (306)
Q Consensus       200 ~~~~--~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~  276 (306)
                      ....  ...+++++|+|+|.+++|+|..|.+.+.+|+++.+.+.+.+       ...+.+.+.+. ||++++++.|++++
T Consensus       164 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~~~~~l~~~~gv~i~~~~~v~~i~  236 (338)
T 3itj_A          164 CDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STIMQKRAEKNEKIEILYNTVALEAK  236 (338)
T ss_dssp             HHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHHHCTTEEEECSEEEEEEE
T ss_pred             cccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHHHHHHHHhcCCeEEeecceeEEEE
Confidence            2222  34688999999999999999999999999999999988765       23455566555 99999999999999


Q ss_pred             eCCCCcEEEEEeCC-----CCEEecCEEEEecCC
Q 021871          277 AGSDGRVAAVKLED-----GSTIDADTVILLPYD  305 (306)
Q Consensus       277 ~~~~~~v~~v~~~~-----G~~i~~d~vv~a~g~  305 (306)
                      . +++.+.+|.+.+     ++++++|.||+|+|.
T Consensus       237 ~-~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~  269 (338)
T 3itj_A          237 G-DGKLLNALRIKNTKKNEETDLPVSGLFYAIGH  269 (338)
T ss_dssp             E-SSSSEEEEEEEETTTTEEEEEECSEEEECSCE
T ss_pred             c-ccCcEEEEEEEECCCCceEEEEeCEEEEEeCC
Confidence            7 455555677665     457999999999985

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.95  E-value=3.7e-27  Score=203.99  Aligned_cols=234  Identities=18%  Similarity=0.217  Sum_probs=164.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +++||+|||||++|+++|++|++.|+   +|+|+|+++..+.....     .++ .....+.+.+..........++...
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~l~~~   74 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGL---SFRFVDPLPEPGGQLTA-----LYP-EKYIYDVAGFPKVYAKDLVKGLVEQ   74 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSCHHHHH-----TCT-TSEECCSTTCSSEEHHHHHHHHHHH
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCeeec-----cCC-CceeeccCCCCCCCHHHHHHHHHHH
Confidence            45799999999999999999999998   99999998764311000     000 0000111222111111112344455


Q ss_pred             HhhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCC---CccCCCCCCCC-CC--CEEEEccHHHHHHHH
Q 021871          130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCT---ASRFPEKIGGY-LP--GVHYIRDVADADALI  201 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~---~~~~~~~~~~~-~~--g~~~~~~~~~~~~~~  201 (306)
                      +.+.+++++++++|..++...  ..+.+.++..+.||+||+|+|..   +. .+.+++.. ..  ++.+.  +.+.    
T Consensus        75 ~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~-~~~i~g~~~~~~~~~~~~--~~~~----  147 (335)
T 2zbw_A           75 VAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPR-RIGAPGEREFEGRGVYYA--VKSK----  147 (335)
T ss_dssp             HGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEEC-CCCCTTTTTTBTTTEESS--CSCG----
T ss_pred             HHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCC-CCCCCChhhccCcEEEEe--cCch----
Confidence            666789998899999988754  35677777789999999999985   43 33444422 11  22211  1111    


Q ss_pred             HhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCC
Q 021871          202 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  281 (306)
Q Consensus       202 ~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~  281 (306)
                       ....+++++|+|+|.+|+|+|..|.+.+.+|+++.+.+.+.+   .+...+.+.+.+++.||+++.++.|++++.  ++
T Consensus       148 -~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~--~~  221 (335)
T 2zbw_A          148 -AEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLTPYELRRVEG--DE  221 (335)
T ss_dssp             -GGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEETTEEEEEEEE--SS
T ss_pred             -hhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEecCCcceeEcc--CC
Confidence             112478999999999999999999999999999999988765   456777888888999999999999999996  34


Q ss_pred             cEEEEEeC---CC--CEEecCEEEEecCC
Q 021871          282 RVAAVKLE---DG--STIDADTVILLPYD  305 (306)
Q Consensus       282 ~v~~v~~~---~G--~~i~~d~vv~a~g~  305 (306)
                      .+.+|.+.   +|  +++++|.||+|+|.
T Consensus       222 ~~~~v~~~~~~~g~~~~i~~D~vi~a~G~  250 (335)
T 2zbw_A          222 RVRWAVVFHNQTQEELALEVDAVLILAGY  250 (335)
T ss_dssp             SEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             CeeEEEEEECCCCceEEEecCEEEEeecC
Confidence            44456665   67  57999999999985

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.95  E-value=6.6e-27  Score=201.11  Aligned_cols=226  Identities=20%  Similarity=0.213  Sum_probs=160.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +++||+|||||++||++|++|+++|+   +|+|+|++ . +        |.+.. ......++.+..........++...
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~-~-g--------g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   79 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYML---KTLVIGET-P-G--------GQLTE-AGIVDDYLGLIEIQASDMIKVFNKH   79 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESS-T-T--------GGGGG-CCEECCSTTSTTEEHHHHHHHHHHH
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCC---cEEEEecc-C-C--------Ceecc-cccccccCCCCCCCHHHHHHHHHHH
Confidence            35799999999999999999999998   89999997 1 1        11100 0111112222211111222345566


Q ss_pred             HhhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCC---CCEEEEccHHHHHHHHHhh
Q 021871          130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL  204 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~  204 (306)
                      +.+.+++++. .+|.+++.+.  ..+.+.++..+.||+||+|+|..+.. |.+++...   +++.+.      .......
T Consensus        80 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~-~~i~g~~~~~~~~~~~~------~~~~~~~  151 (323)
T 3f8d_A           80 IEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRK-LGVPGEQEFAGRGISYC------SVADAPL  151 (323)
T ss_dssp             HHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECC-CCCTTTTTTBTTTEESC------HHHHGGG
T ss_pred             HHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCcc-CCCCchhhhcCCceEEe------ccCCHhH
Confidence            6778899888 7999998764  36777787889999999999999764 55555432   444332      1122234


Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEE
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~  284 (306)
                      ..+++++|+|+|.+++|+|..+.+.+.+|+++.+.+.+.+   .+.   .+.+.+++.||+++.++.|++++. + +.+.
T Consensus       152 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~~~~v~~i~~-~-~~~~  223 (323)
T 3f8d_A          152 FKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QPI---YVETVKKKPNVEFVLNSVVKEIKG-D-KVVK  223 (323)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEE-S-SSEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHH---HHHHHHhCCCcEEEeCCEEEEEec-c-Ccee
Confidence            5689999999999999999999999999999999988776   332   223333445999999999999995 3 4454


Q ss_pred             EEEeCC---CC--EEecCEEEEecCC
Q 021871          285 AVKLED---GS--TIDADTVILLPYD  305 (306)
Q Consensus       285 ~v~~~~---G~--~i~~d~vv~a~g~  305 (306)
                      +|.+.+   |+  ++++|.||+|+|.
T Consensus       224 ~v~~~~~~~g~~~~~~~D~vv~a~G~  249 (323)
T 3f8d_A          224 QVVVENLKTGEIKELNVNGVFIEIGF  249 (323)
T ss_dssp             EEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             EEEEEECCCCceEEEEcCEEEEEECC
Confidence            677765   76  7999999999985

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.95  E-value=2.1e-27  Score=204.26  Aligned_cols=231  Identities=16%  Similarity=0.194  Sum_probs=162.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccc-cCCCCCcCChh
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQTPE  128 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  128 (306)
                      +++||+|||||++|+++|+.|++.|+   +|+|+|+....+        .+....  ....+|.+... .......++..
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   70 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGG--------QLTTTT--EVENWPGDPNDLTGPLLMERMHE   70 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC---CCEEECCSSTTG--------GGGGCS--BCCCSTTCCSSCBHHHHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEccCCCCc--------eEecch--hhhhCCCCCCCCCHHHHHHHHHH
Confidence            45799999999999999999999998   899999652211        000000  00111222110 00111233445


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEE-cCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHHhh
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLI-TNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL  204 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~-~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~  204 (306)
                      .+.+.+++++.+ .+..++.....+. +.++..+.||+||+|+|..+.. |.+++..   .+++...      .......
T Consensus        71 ~~~~~~~~~~~~-~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~-~~~~g~~~~~~~~~~~~------~~~~~~~  142 (320)
T 1trb_A           71 HATKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASARY-LGLPSEEAFKGRGVSAC------ATSDGFF  142 (320)
T ss_dssp             HHHHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECC-CCCHHHHHTBTTTEESC------HHHHGGG
T ss_pred             HHHHCCCEEEEe-eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCC-CCCCChHHhCCceeEec------ccCCccc
Confidence            566789999887 4888887654333 5567789999999999998763 4443321   1223221      1222234


Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEE
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~  284 (306)
                      ..+++++|||+|.+|+|+|..|.+.+.+|+++.+.+.+..   ++.+.+.+.+.+++.||+++++++|++++. +++.+.
T Consensus       143 ~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~~~~v~  218 (320)
T 1trb_A          143 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA---EKILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGVT  218 (320)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC---CHHHHHHHHHHHHTSSEEEECSCEEEEEEE-CSSSEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc---CHHHHHHHHHhcccCCeEEEcCceeEEEEc-CCCceE
Confidence            5689999999999999999999999999999999887653   677888888889999999999999999996 444555


Q ss_pred             EEEeCC----C--CEEecCEEEEecCC
Q 021871          285 AVKLED----G--STIDADTVILLPYD  305 (306)
Q Consensus       285 ~v~~~~----G--~~i~~d~vv~a~g~  305 (306)
                      +|.+.+    |  +++++|.||+|+|.
T Consensus       219 ~v~~~~~~~~g~~~~i~~D~vv~a~G~  245 (320)
T 1trb_A          219 GVRLRDTQNSDNIESLDVAGLFVAIGH  245 (320)
T ss_dssp             EEEEECCTTCCCCEEEECSEEEECSCE
T ss_pred             EEEEEeccCCCceEEEEcCEEEEEeCC
Confidence            676654    4  47999999999985

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.95  E-value=2.9e-27  Score=206.71  Aligned_cols=237  Identities=21%  Similarity=0.277  Sum_probs=165.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ++.+||+|||||++|+++|+.|++.|+   +|+|+|+.+..+....     ...+ .......+++...........+..
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~   82 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNI---SCRIIESMPQLGGQLA-----ALYP-EKHIYDVAGFPEVPAIDLVESLWA   82 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHH-----HTCT-TSEECCSTTCSSEEHHHHHHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCCCccc-----ccCC-CcccccCCCCCCCCHHHHHHHHHH
Confidence            346899999999999999999999998   9999999866421000     0000 001111222211111111234445


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCC---CEEEcCCCcEEecCcEEEeeCCCCc--cCCCCCC-C-CCCC--EEEEccHHHHHH
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS--RFPEKIG-G-YLPG--VHYIRDVADADA  199 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~---~~v~~~~g~~~~~~~lila~G~~~~--~~~~~~~-~-~~~g--~~~~~~~~~~~~  199 (306)
                      .+++.+++++++++|..++...   ..+.+.++..+.||+||+|+|....  ..+.+++ . ...+  +.+.  +.+.  
T Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~--~~~~--  158 (360)
T 3ab1_A           83 QAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA--VKSV--  158 (360)
T ss_dssp             HHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESS--CSCG--
T ss_pred             HHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEe--cCCH--
Confidence            5666789999899999998753   3677888888999999999998432  1234444 2 2222  3221  1111  


Q ss_pred             HHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC
Q 021871          200 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  279 (306)
Q Consensus       200 ~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  279 (306)
                         ....+++++|||+|.+++|+|..|.+.+.+|+++.+.+.+.+   .+.+.+.+.+.+++.||+++.+++|++++. +
T Consensus       159 ---~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~-~  231 (360)
T 3ab1_A          159 ---EDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG---HGKTAHEVERARANGTIDVYLETEVASIEE-S  231 (360)
T ss_dssp             ---GGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS---CSHHHHSSHHHHHHTSEEEESSEEEEEEEE-E
T ss_pred             ---HHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC---CHHHHHHHHHHhhcCceEEEcCcCHHHhcc-C
Confidence               112478999999999999999999999999999999988765   245667788888899999999999999996 4


Q ss_pred             CCcEEEEEeC--CC--CEEecCEEEEecCC
Q 021871          280 DGRVAAVKLE--DG--STIDADTVILLPYD  305 (306)
Q Consensus       280 ~~~v~~v~~~--~G--~~i~~d~vv~a~g~  305 (306)
                      ++++.+|.+.  +|  +.+++|.||+|+|.
T Consensus       232 ~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~  261 (360)
T 3ab1_A          232 NGVLTRVHLRSSDGSKWTVEADRLLILIGF  261 (360)
T ss_dssp             TTEEEEEEEEETTCCEEEEECSEEEECCCB
T ss_pred             CCceEEEEEEecCCCeEEEeCCEEEECCCC
Confidence            5655556664  77  57999999999985

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.8e-27  Score=215.50  Aligned_cols=240  Identities=19%  Similarity=0.268  Sum_probs=167.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcccccccc-----------C--CCCCCCCC-----
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF-----------P--LDKKPARL-----  111 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~-----  111 (306)
                      ..+||+|||||++|+++|++|++.|+   +|+|+|++..-+-  + .+.|++.           .  .......+     
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~--~-~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~   83 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGA---KTLLVEAKALGGT--C-VNVGCVPKKVMWYASDLATRVSHANEYGLYQNLP   83 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSC---CEEEEESSCTTHH--H-HHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCC---cEEEEeCCCcCCc--C-cccCcHHHHHHHHHHHHHHHHHhHHhcCcccccc
Confidence            35799999999999999999999998   9999999742110  0 0000000           0  00000000     


Q ss_pred             -------CCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCcc
Q 021871          112 -------PGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASR  176 (306)
Q Consensus       112 -------~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~  176 (306)
                             ..+.....      ......+...+++.+++++.+ .+..++.....+.+.++.  .+.||+||+|||+.+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~  162 (479)
T 2hqm_A           84 LDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFG-WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIF  162 (479)
T ss_dssp             CSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE-EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECC
T ss_pred             cccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC
Confidence                   00000000      000001223355678998877 466666555566666665  79999999999998874


Q ss_pred             CCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHH
Q 021871          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  256 (306)
Q Consensus       177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (306)
                      ++++++     ...   ..+++.+......+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.
T Consensus       163 p~~i~g-----~~~---~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~  233 (479)
T 2hqm_A          163 PENIPG-----FEL---GTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-FDECIQNTIT  233 (479)
T ss_dssp             CTTSTT-----GGG---SBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHH
T ss_pred             CCCCCC-----ccc---ccchHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-cCHHHHHHHH
Confidence            314443     211   1234455544456899999999999999999999999999999999998876 7999999999


Q ss_pred             HHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-CEEecCEEEEecCC
Q 021871          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTVILLPYD  305 (306)
Q Consensus       257 ~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~i~~d~vv~a~g~  305 (306)
                      +.+++.||+++++++|++++..+++.+..|.+.+| +++++|.||+|+|.
T Consensus       234 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~  283 (479)
T 2hqm_A          234 DHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR  283 (479)
T ss_dssp             HHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCE
T ss_pred             HHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC
Confidence            99999999999999999998644553346888898 78999999999985

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.95  E-value=2e-25  Score=204.06  Aligned_cols=240  Identities=20%  Similarity=0.250  Sum_probs=170.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc--------------------cC-CCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL--------------------FP-LDKK  107 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~--------------------~~-~~~~  107 (306)
                      +.++||+|||||++|+++|++|++.|+   +|+|+|+++..+-. + ...+++                    +. +...
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~-~-~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~  115 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGG---RQLIVDRWPFLGGS-C-PHNACVPHHLFSDCAAELMLARTFSGQYWFPDM  115 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSCH-H-HHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCc-c-cccCcCchHHHHHHHHHHHHHhhhhhcCcHHHH
Confidence            456899999999999999999999998   99999998743210 0 000000                    00 0000


Q ss_pred             CCCCCCcccccCCCCCcCCh---hHH-----hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCC
Q 021871          108 PARLPGFHTCVGSGGERQTP---EWY-----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE  179 (306)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~  179 (306)
                      ...++...... ........   .++     ++.+++++++.++..++.  ..+.+. +..+.||++|+|||+.+.. |+
T Consensus       116 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~~-p~  190 (523)
T 1mo9_A          116 TEKVVGIKEVV-DLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPGT-LD  190 (523)
T ss_dssp             TTCCCCHHHHH-HHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECCC-CC
T ss_pred             HhhhhhHHHHH-HHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCCC-CC
Confidence            00000000000 00000122   445     677899885668877775  466665 6689999999999998874 55


Q ss_pred             CCCCCCCCEEEEccHHHHHHHH-HhhhcC-CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHH
Q 021871          180 KIGGYLPGVHYIRDVADADALI-SSLEKA-KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ  257 (306)
Q Consensus       180 ~~~~~~~g~~~~~~~~~~~~~~-~~~~~~-~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (306)
                      +++.+.+++.      +...+. +....+ ++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+
T Consensus       191 i~G~~~~~v~------~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~  263 (523)
T 1mo9_A          191 VPGVNAKGVF------DHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLD  263 (523)
T ss_dssp             STTTTSBTEE------EHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHH
T ss_pred             CCCcccCcEe------eHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHHHH
Confidence            6664444443      233333 222345 89999999999999999999999999999999998886 78999999999


Q ss_pred             HHHHcCCEEEcCceEEEEEeCCCCcE--EEEEeCCCC-EEecCEEEEecCC
Q 021871          258 LYQQNGVKFVKGASIKNLEAGSDGRV--AAVKLEDGS-TIDADTVILLPYD  305 (306)
Q Consensus       258 ~~~~~gv~i~~~~~v~~i~~~~~~~v--~~v~~~~G~-~i~~d~vv~a~g~  305 (306)
                      .+++.||+++++++|++++..+++++  ..|++.+|+ ++++|.||+|+|.
T Consensus       264 ~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~  314 (523)
T 1mo9_A          264 RMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGE  314 (523)
T ss_dssp             HHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCC
T ss_pred             HHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCC
Confidence            99999999999999999996445543  368888887 8999999999996

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.94  E-value=9e-26  Score=203.89  Aligned_cols=234  Identities=15%  Similarity=0.228  Sum_probs=166.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc-----------------cCC------CC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL-----------------FPL------DK  106 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~-----------------~~~------~~  106 (306)
                      .++||+|||||++|+++|++|++.|+   +|+|+|++. .+-.  ....|++                 .+.      ..
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~-~GG~--~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~   76 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGA---QVTLIERGT-IGGT--CVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATV   76 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSS-TTHH--HHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCC-CCcc--ccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCC
Confidence            46899999999999999999999998   999999983 2100  0000000                 000      00


Q ss_pred             CCCCCCCcccccCC------CCC-cCChhHHhhc-CeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeCCCCcc
Q 021871          107 KPARLPGFHTCVGS------GGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       107 ~~~~~~~~~~~~~~------~~~-~~~~~~~~~~-~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G~~~~~  176 (306)
                      ...+   +..+...      ... .....++++. +++++.+ ++..++.....+.+.+|  ..++||++|+|||+.+..
T Consensus        77 ~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~  152 (467)
T 1zk7_A           77 PTID---RSKLLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAV  152 (467)
T ss_dssp             CCCC---HHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECC
T ss_pred             CccC---HHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCC
Confidence            0000   1000000      000 0123445566 8998876 57777766566777777  679999999999998874


Q ss_pred             CCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHH
Q 021871          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  256 (306)
Q Consensus       177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (306)
                       |++++.+...+      .+...+.+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++  +++.+.+.+.
T Consensus       153 -p~i~G~~~~~~------~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~  223 (467)
T 1zk7_A          153 -PPIPGLKESPY------WTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVT  223 (467)
T ss_dssp             -CCCTTTTTSCC------BCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHH
T ss_pred             -CCCCCCCcCce------ecHHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHH
Confidence             55555322221      23444444444689999999999999999999999999999999999888  6899999999


Q ss_pred             HHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       257 ~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.++++||+++++++|++++. +++.+ .|.++ ++++++|.||+|+|.
T Consensus       224 ~~l~~~Gv~i~~~~~v~~i~~-~~~~~-~v~~~-~~~i~aD~Vv~a~G~  269 (467)
T 1zk7_A          224 AAFRAEGIEVLEHTQASQVAH-MDGEF-VLTTT-HGELRADKLLVATGR  269 (467)
T ss_dssp             HHHHHTTCEEETTCCEEEEEE-ETTEE-EEEET-TEEEEESEEEECSCE
T ss_pred             HHHHhCCCEEEcCCEEEEEEE-eCCEE-EEEEC-CcEEEcCEEEECCCC
Confidence            999999999999999999986 33333 57776 458999999999985

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.94  E-value=6.3e-27  Score=212.02  Aligned_cols=243  Identities=19%  Similarity=0.237  Sum_probs=165.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC--CCCccc-----------------cccccCCCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPALT-----------------KGYLFPLDKKPA  109 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~~~-----------------~~~~~~~~~~~~  109 (306)
                      +.++||+|||||++|+++|++|++.|+   +|+|+|++..-+-  .....+                 ..+.+.......
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~---~V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~   94 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGA---RAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKF   94 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence            345899999999999999999999998   9999998743110  000000                 000000000000


Q ss_pred             CCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCC--CCCCCC
Q 021871          110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGY  184 (306)
Q Consensus       110 ~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~--~~~~~~  184 (306)
                      ++..+....   .......+...+++.++++..+ .+..++.....+. .++..+.||+||+|||+.+..++  +     
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~-----  167 (478)
T 3dk9_A           95 NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG-HAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQ-----  167 (478)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTT-----
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCC-----
Confidence            000000000   0000011223345568888876 5555666556666 45667999999999999877431  3     


Q ss_pred             CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCC
Q 021871          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  264 (306)
Q Consensus       185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  264 (306)
                      ++|..+   ..+++.++.....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.++++||
T Consensus       168 i~G~~~---~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~gv  243 (478)
T 3dk9_A          168 IPGASL---GITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGV  243 (478)
T ss_dssp             STTGGG---SBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTC
T ss_pred             CCCCce---eEchHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc-cCHHHHHHHHHHHHHCCC
Confidence            344321   2244555444445799999999999999999999999999999999998875 799999999999999999


Q ss_pred             EEEcCceEEEEEeCCCCcEEEEEeCC---C----CEEecCEEEEecCC
Q 021871          265 KFVKGASIKNLEAGSDGRVAAVKLED---G----STIDADTVILLPYD  305 (306)
Q Consensus       265 ~i~~~~~v~~i~~~~~~~v~~v~~~~---G----~~i~~d~vv~a~g~  305 (306)
                      ++++++.|++++..+++....+.+.+   |    +.+++|.||+|+|.
T Consensus       244 ~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~  291 (478)
T 3dk9_A          244 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR  291 (478)
T ss_dssp             EEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCE
T ss_pred             EEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecc
Confidence            99999999999975566233577765   2    57999999999985

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.94  E-value=9.7e-27  Score=211.71  Aligned_cols=238  Identities=19%  Similarity=0.286  Sum_probs=155.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-CC-CCccccc----------c-----ccCCCC-CCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YE-RPALTKG----------Y-----LFPLDK-KPARLP  112 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~-~~~~~~~----------~-----~~~~~~-~~~~~~  112 (306)
                      ++||+|||||++|+++|++|++.|+   +|+|+|++...+ +. ....+..          .     .+.... ...+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNA---KVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLP   78 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHH
Confidence            4799999999999999999999998   999999985211 00 0000000          0     000000 001110


Q ss_pred             CcccccC---CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCC-------------CcEEecCcEEEeeCCCCcc
Q 021871          113 GFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-------------GKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       113 ~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~-------------g~~~~~~~lila~G~~~~~  176 (306)
                      .+.....   ......+...+++.+++++.+. +..++.  +.+.+.+             +..+.||+||+|||+.+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~  155 (500)
T 1onf_A           79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGT-ASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVF  155 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CCCC----------------------------CBSSEEECCCCCBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCC
Confidence            0000000   0000112234566789988774 333333  3444433             5579999999999998874


Q ss_pred             CCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHH
Q 021871          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  256 (306)
Q Consensus       177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (306)
                       |++++.  +.+      .+++.+.+... +++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.
T Consensus       156 -p~i~G~--~~~------~~~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~  224 (500)
T 1onf_A          156 -PPVKGI--ENT------ISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLE  224 (500)
T ss_dssp             -CSCTTG--GGC------EEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHHHH
T ss_pred             -CCCCCC--Ccc------cCHHHHhccCC-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-cchhhHHHHH
Confidence             444442  111      12333333222 789999999999999999999999999999999998875 7999999999


Q ss_pred             HHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCE-EecCEEEEecCCC
Q 021871          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTVILLPYDQ  306 (306)
Q Consensus       257 ~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~-i~~d~vv~a~g~~  306 (306)
                      +.++++||+++++++|++++..+++.+ .|.+.+|++ +++|.||+|+|..
T Consensus       225 ~~l~~~gv~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~D~vi~a~G~~  274 (500)
T 1onf_A          225 NDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEHFDHVIYCVGRS  274 (500)
T ss_dssp             HHHHHTTCEEECSCCEEEEEESSTTCE-EEEETTSCEEEEESEEEECCCBC
T ss_pred             HHHHhCCCEEEECCEEEEEEEcCCceE-EEEECCCcEEEECCEEEECCCCC
Confidence            999999999999999999986444443 688889987 9999999999963

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.94  E-value=3.6e-27  Score=211.89  Aligned_cols=235  Identities=19%  Similarity=0.306  Sum_probs=164.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc---------------------cCC--CC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL---------------------FPL--DK  106 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~---------------------~~~--~~  106 (306)
                      +++||+|||||++|+++|++|++.|+   +|+|+|++..-+-  +. +.+++                     +..  ..
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~--~~-~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~   76 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQ---KCALIEAKELGGT--CV-NVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTI   76 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCTTHH--HH-HHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC---eEEEEcCCCCCCc--cc-ccCccChHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence            35799999999999999999999998   9999999742110  00 00000                     000  00


Q ss_pred             CCCCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCC
Q 021871          107 KPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG  183 (306)
Q Consensus       107 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~  183 (306)
                      ...++..+....   .......+...+++.+++++.+ ++..++.  +.+.+ ++..+.||++|+|||+.+.. |+++  
T Consensus        77 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~-p~i~--  149 (450)
T 1ges_A           77 NKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG-FARFVDA--KTLEV-NGETITADHILIATGGRPSH-PDIP--  149 (450)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CCEEEET--TEEEE-TTEEEEEEEEEECCCEEECC-CCST--
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecC--CEEEE-CCEEEEeCEEEECCCCCCCC-CCCC--
Confidence            000000000000   0000011123346678999877 4455654  46666 66789999999999998874 4444  


Q ss_pred             CCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcC
Q 021871          184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  263 (306)
Q Consensus       184 ~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  263 (306)
                         |...   ..+++.+......+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.+++.|
T Consensus       150 ---g~~~---~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~G  222 (450)
T 1ges_A          150 ---GVEY---GIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNAEG  222 (450)
T ss_dssp             ---TGGG---SBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHS
T ss_pred             ---Cccc---eecHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-hhHHHHHHHHHHHHHCC
Confidence               3211   2234444444446889999999999999999999999999999999988875 78999999999999999


Q ss_pred             CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       264 v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      |+++++++|++++.++++.+ .|.+.+|+++++|.||+|+|.
T Consensus       223 v~i~~~~~v~~i~~~~~~~~-~v~~~~g~~i~~D~vv~a~G~  263 (450)
T 1ges_A          223 PQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIGR  263 (450)
T ss_dssp             CEEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSCE
T ss_pred             CEEEeCCEEEEEEEeCCcEE-EEEECCCcEEEcCEEEECCCC
Confidence            99999999999996444434 688889989999999999985

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.94  E-value=1.3e-26  Score=198.63  Aligned_cols=226  Identities=20%  Similarity=0.222  Sum_probs=157.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEE-eccCCCCCCCCCccccccccCCCCCCCCCCCcc-cccCCCCCcCCh
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCI-VSKEAYAPYERPALTKGYLFPLDKKPARLPGFH-TCVGSGGERQTP  127 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~v-ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  127 (306)
                      +++||+|||||++||++|++|++.|+   +|+| +|+. ..+        |.+.. ......+|++. .........++.
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~li~e~~-~~g--------G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   69 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGL---KNVVMFEKG-MPG--------GQITS-SSEIENYPGVAQVMDGISFMAPWS   69 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTC---SCEEEECSS-STT--------GGGGG-CSCBCCSTTCCSCBCHHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC---CeEEEEeCC-CCC--------ceeee-eceeccCCCCCCCCCHHHHHHHHH
Confidence            46899999999999999999999998   8999 9994 221        11100 00011122221 001111123455


Q ss_pred             hHHhhcCeEEEeCCcEEEEeCCC----CEE-EcCCCcEEecCcEEEeeCCCCccCCCCCCCCC---CCEEEEccHHHHHH
Q 021871          128 EWYKEKGIEMIYQDPVTSIDIEK----QTL-ITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADA  199 (306)
Q Consensus       128 ~~~~~~~v~~~~~~~v~~v~~~~----~~v-~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~---~g~~~~~~~~~~~~  199 (306)
                      ..+++.+++++.+ +|..+ .+.    ..+ ...++ .+.||++|+|+|..+. .|.+++...   +++...      ..
T Consensus        70 ~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~-~~~~~g~~~~~~~~~~~~------~~  139 (315)
T 3r9u_A           70 EQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPK-KAGFKGEDEFFGKGVSTC------AT  139 (315)
T ss_dssp             HHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESC------HH
T ss_pred             HHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCC-CCCCCChhhcCCCeEEee------ec
Confidence            6667789999877 88888 443    342 22334 8999999999999776 355555432   333322      22


Q ss_pred             HHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC
Q 021871          200 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  279 (306)
Q Consensus       200 ~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  279 (306)
                      .......+++++|+|+|.+++++|..+.+.+.+|+++.+.+.+..   .+.+   +.+.+++.||++++++.|.++.. +
T Consensus       140 ~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~~---~~~~~~~~gv~~~~~~~v~~i~~-~  212 (315)
T 3r9u_A          140 CDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA---APST---VEKVKKNEKIELITSASVDEVYG-D  212 (315)
T ss_dssp             HHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS---CHHH---HHHHHHCTTEEEECSCEEEEEEE-E
T ss_pred             ccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC---CHHH---HHHHHhcCCeEEEeCcEEEEEEc-C
Confidence            233445689999999999999999999999999999999988743   4333   34555788999999999999986 4


Q ss_pred             CCcEEEEEeC--CCC--EEecCEEEEecCC
Q 021871          280 DGRVAAVKLE--DGS--TIDADTVILLPYD  305 (306)
Q Consensus       280 ~~~v~~v~~~--~G~--~i~~d~vv~a~g~  305 (306)
                      ++.+.+|.+.  +|+  ++++|.||+|+|.
T Consensus       213 ~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~  242 (315)
T 3r9u_A          213 KMGVAGVKVKLKDGSIRDLNVPGIFTFVGL  242 (315)
T ss_dssp             TTEEEEEEEECTTSCEEEECCSCEEECSCE
T ss_pred             CCcEEEEEEEcCCCCeEEeecCeEEEEEcC
Confidence            5555566665  786  7999999999985

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.94  E-value=2e-26  Score=197.24  Aligned_cols=225  Identities=21%  Similarity=0.240  Sum_probs=157.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHh
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (306)
                      +||+|||||++|+++|..|++.|+   +|+|+|+...          |.+..... ...++............++...++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~li~~~~g----------G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   67 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGI---RTGLMGERFG----------GQILDTVD-IENYISVPKTEGQKLAGALKVHVD   67 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSTT----------GGGGGCCE-ECCBTTBSSEEHHHHHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCC----------ceeccccc-cccccCcCCCCHHHHHHHHHHHHH
Confidence            699999999999999999999998   9999986421          11100000 000011000000111234455567


Q ss_pred             hcCeEEEeCCcEEEEeCC-----CCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHHh
Q 021871          132 EKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS  203 (306)
Q Consensus       132 ~~~v~~~~~~~v~~v~~~-----~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~  203 (306)
                      +.+++++.+++|..++.+     ...+.++++..+.||++|+|+|+.+.. |.+++..   .+.+.++      ..+...
T Consensus        68 ~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~-~~~~g~~~~~~~~~~~~------~~~~~~  140 (310)
T 1fl2_A           68 EYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN-MNVPGEDQYRTKGVTYC------PHCDGP  140 (310)
T ss_dssp             TSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESC------HHHHGG
T ss_pred             HcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCC-CCCCChhhcccceeEEe------ccCcHh
Confidence            789999999899999764     346778888889999999999998763 4455432   1223222      222234


Q ss_pred             hhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCc
Q 021871          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGR  282 (306)
Q Consensus       204 ~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~  282 (306)
                      ...+++++|+|+|.+|+|+|..|...+.+|+++.+.+.+.   .++    .+.+.+++ .||+++++++|+++.. ++++
T Consensus       141 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~----~~~~~l~~~~gv~v~~~~~v~~i~~-~~~~  212 (310)
T 1fl2_A          141 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQ----VLQDKLRSLKNVDIILNAQTTEVKG-DGSK  212 (310)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCH----HHHHHHHTCTTEEEESSEEEEEEEE-SSSS
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccH----HHHHHHhhCCCeEEecCCceEEEEc-CCCc
Confidence            4568999999999999999999999999999999998763   233    34556666 6999999999999986 4555


Q ss_pred             EEEEEeCC---CC--EEecCEEEEecCC
Q 021871          283 VAAVKLED---GS--TIDADTVILLPYD  305 (306)
Q Consensus       283 v~~v~~~~---G~--~i~~d~vv~a~g~  305 (306)
                      +.+|++.+   |+  ++++|.||+|+|.
T Consensus       213 v~~v~~~~~~~g~~~~i~~D~vi~a~G~  240 (310)
T 1fl2_A          213 VVGLEYRDRVSGDIHNIELAGIFVQIGL  240 (310)
T ss_dssp             EEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             EEEEEEEECCCCcEEEEEcCEEEEeeCC
Confidence            55566643   54  6899999999985

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.94  E-value=3.9e-26  Score=205.79  Aligned_cols=237  Identities=19%  Similarity=0.314  Sum_probs=164.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-CCCCc-cc-----------------cccccCCCCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERPA-LT-----------------KGYLFPLDKKPAR  110 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~~-~~-----------------~~~~~~~~~~~~~  110 (306)
                      +++||+|||||++|+++|++|++.|+   +|+|+|++...+ +.... .+                 ..+-+.......+
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~   79 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGK---RVALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLD   79 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCC---cEEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence            45899999999999999999999998   999999974211 00000 00                 0000000000011


Q ss_pred             CCCcccccC---CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCC
Q 021871          111 LPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG  187 (306)
Q Consensus       111 ~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g  187 (306)
                      ++.+.....   ......+...+++.+++++.+ .+..++.  +.+.+ ++..+.||++|+|||+.+.. |+++     |
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~-p~i~-----G  149 (463)
T 2r9z_A           80 WPRLVAGRDRYIGAINSFWDGYVERLGITRVDG-HARFVDA--HTIEV-EGQRLSADHIVIATGGRPIV-PRLP-----G  149 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEET--TEEEE-TTEEEEEEEEEECCCEEECC-CSCT-----T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEe-EEEEccC--CEEEE-CCEEEEcCEEEECCCCCCCC-CCCC-----C
Confidence            000000000   000001223346678998877 4555553  56666 66789999999999998774 4443     3


Q ss_pred             EEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEE
Q 021871          188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  267 (306)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~  267 (306)
                      ...   ..+++.+.+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.++++||+++
T Consensus       150 ~~~---~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i~  225 (463)
T 2r9z_A          150 AEL---GITSDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHAQGIETH  225 (463)
T ss_dssp             GGG---SBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEE
T ss_pred             ccc---eecHHHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEEE
Confidence            211   2234444444445789999999999999999999999999999999988875 789999999999999999999


Q ss_pred             cCceEEEEEeCCCCcEEEEEeCCCC-EEecCEEEEecCC
Q 021871          268 KGASIKNLEAGSDGRVAAVKLEDGS-TIDADTVILLPYD  305 (306)
Q Consensus       268 ~~~~v~~i~~~~~~~v~~v~~~~G~-~i~~d~vv~a~g~  305 (306)
                      ++++|++++.++++ + .|++.+|+ ++++|.||+|+|.
T Consensus       226 ~~~~v~~i~~~~~~-~-~v~~~~G~~~i~~D~vv~a~G~  262 (463)
T 2r9z_A          226 LEFAVAALERDAQG-T-TLVAQDGTRLEGFDSVIWAVGR  262 (463)
T ss_dssp             SSCCEEEEEEETTE-E-EEEETTCCEEEEESEEEECSCE
T ss_pred             eCCEEEEEEEeCCe-E-EEEEeCCcEEEEcCEEEECCCC
Confidence            99999999864343 3 68889998 8999999999985

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.94  E-value=1e-26  Score=200.79  Aligned_cols=228  Identities=17%  Similarity=0.167  Sum_probs=160.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ++||+|||||++||++|+.|++.|+   +|+|+|+.+..+-...     ..++ .....+++++..........++...+
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gG~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQA---SVKIIESLPQLGGQLS-----ALYP-EKYIYDVAGFPKIRAQELINNLKEQM   77 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHH-----HHCT-TSEECCSTTCSSEEHHHHHHHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCCCCceeh-----hcCC-CceEeccCCCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999999998   9999999876431000     0000 01111222222211122234555666


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCcEEEeeCC---CCccCCCCCCCCC---CCEEEEccHHHHHHHH
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC---TASRFPEKIGGYL---PGVHYIRDVADADALI  201 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~lila~G~---~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~  201 (306)
                      ++.+++++++++|.+++....   .+.+.+++ +.||+||+|+|.   .+. .|.+++...   ..+.+  .+.+.    
T Consensus        78 ~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~-~~~~~g~~~~~g~~~~~--~~~~~----  149 (332)
T 3lzw_A           78 AKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPR-KLELENAEQYEGKNLHY--FVDDL----  149 (332)
T ss_dssp             TTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEEC-CCCCTTGGGGBTTTEES--SCSCG----
T ss_pred             HHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCC-CCCCCChhhccCceEEE--ecCCH----
Confidence            678999999999999988654   77777776 999999999999   555 344444321   22222  12221    


Q ss_pred             HhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCC
Q 021871          202 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  281 (306)
Q Consensus       202 ~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~  281 (306)
                       ....+++++|+|+|.+++++|..+.+.+.+|+++.+.+.+.+.  .     ...+.++++||+++.++.|++++.+ ++
T Consensus       150 -~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~--~-----~~~~~l~~~gv~~~~~~~v~~i~~~-~~  220 (332)
T 3lzw_A          150 -QKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH--E-----HSVENLHASKVNVLTPFVPAELIGE-DK  220 (332)
T ss_dssp             -GGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC--H-----HHHHHHHHSSCEEETTEEEEEEECS-SS
T ss_pred             -HHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc--H-----HHHHHHhcCCeEEEeCceeeEEecC-Cc
Confidence             1224789999999999999999999999999999999887542  2     2234578899999999999999963 33


Q ss_pred             cEEEEEeCC-----CCEEecCEEEEecCC
Q 021871          282 RVAAVKLED-----GSTIDADTVILLPYD  305 (306)
Q Consensus       282 ~v~~v~~~~-----G~~i~~d~vv~a~g~  305 (306)
                       +..|.+.+     ++++++|.||+|+|.
T Consensus       221 -~~~v~~~~~~~g~~~~~~~D~vv~a~G~  248 (332)
T 3lzw_A          221 -IEQLVLEEVKGDRKEILEIDDLIVNYGF  248 (332)
T ss_dssp             -CCEEEEEETTSCCEEEEECSEEEECCCE
T ss_pred             -eEEEEEEecCCCceEEEECCEEEEeecc
Confidence             33566655     357999999999985

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.94  E-value=1.3e-25  Score=192.94  Aligned_cols=226  Identities=22%  Similarity=0.227  Sum_probs=156.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +.+||+|||||++|+++|+.|++.|+   +|+|+|+....+         .+... .....+|++...........+...
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg---------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   81 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGF---SVAILDKAVAGG---------LTAEA-PLVENYLGFKSIVGSELAKLFADH   81 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSTTG---------GGGGC-SCBCCBTTBSSBCHHHHHHHHHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCCCc---------ccccc-chhhhcCCCcccCHHHHHHHHHHH
Confidence            35799999999999999999999998   999999953211         11000 000111222000001112334455


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCC---CCEEEEccHHHHHHHHHhh
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL  204 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~  204 (306)
                      +++.+++++. .++..++....  .+.+ ++..+.||++|+|+|..+.. |.+++.+.   +++.+..   .   .....
T Consensus        82 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~-~~i~g~~~~~~~~~~~~~---~---~~~~~  152 (319)
T 3cty_A           82 AANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKH-LGVKGESEYFGKGTSYCS---T---CDGYL  152 (319)
T ss_dssp             HHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECC-CCCBTTTTTBTTTEESCH---H---HHGGG
T ss_pred             HHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCccc-CCCCChHHhCCceEEEEE---e---cchhh
Confidence            6677899887 68988886554  4555 55679999999999988764 44554321   3343321   1   12234


Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEE
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~  284 (306)
                      ..+++++|+|+|.+++|+|..+.+.+.+|+++.+.+.+..   .+    .+.+.+++.||+++++++|+++.. +++++.
T Consensus       153 ~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~----~l~~~l~~~gv~i~~~~~v~~i~~-~~~~v~  224 (319)
T 3cty_A          153 FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---EN----AYVQEIKKRNIPYIMNAQVTEIVG-DGKKVT  224 (319)
T ss_dssp             GBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CH----HHHHHHHHTTCCEECSEEEEEEEE-SSSSEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CH----HHHHHHhcCCcEEEcCCeEEEEec-CCceEE
Confidence            5678999999999999999999999999999999887643   33    345566789999999999999996 445455


Q ss_pred             EEEeC---CCC--EEecCEEEEecCC
Q 021871          285 AVKLE---DGS--TIDADTVILLPYD  305 (306)
Q Consensus       285 ~v~~~---~G~--~i~~d~vv~a~g~  305 (306)
                      +|.+.   +|+  .+++|.||+|+|.
T Consensus       225 ~v~~~~~~~g~~~~i~~D~vi~a~G~  250 (319)
T 3cty_A          225 GVKYKDRTTGEEKLIETDGVFIYVGL  250 (319)
T ss_dssp             EEEEEETTTCCEEEECCSEEEECCCE
T ss_pred             EEEEEEcCCCceEEEecCEEEEeeCC
Confidence            66664   675  6899999999985

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.94  E-value=5.1e-27  Score=213.12  Aligned_cols=236  Identities=17%  Similarity=0.290  Sum_probs=162.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-cCCCCCcEEEecc--------CCCCCCCCCccccccc--------------------
Q 021871           51 NREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSK--------EAYAPYERPALTKGYL--------------------  101 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~-~g~~~~~V~vie~--------~~~~~~~~~~~~~~~~--------------------  101 (306)
                      ++||+|||||++|+++|++|++ .|+   +|+|+|+        ....+-  .....+++                    
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~---~V~liE~~~~~~~~~~~~~GG--~~~~~gciP~k~l~~~a~~~~~~~~~~~   81 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGK---RVAVVDVQTSHGPPFYAALGG--TCVNVGCVPKKLMVTGAQYMDHLRESAG   81 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCC---CEEEEESCSSSBTTTBCBTTH--HHHHHSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCC---eEEEEecccccccccCCCCCC--eeecCCcchHHHHHHHHHHHHHHhHHHh
Confidence            5899999999999999999999 998   9999992        222110  00000000                    


Q ss_pred             cCCCCCCCC-CCCcccccC------CCCCcCChhHHhhc-CeEEEeCCcEEEEeCCCCEEEcC---C-----CcEEecCc
Q 021871          102 FPLDKKPAR-LPGFHTCVG------SGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITN---S-----GKLLKYGS  165 (306)
Q Consensus       102 ~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~-~v~~~~~~~v~~v~~~~~~v~~~---~-----g~~~~~~~  165 (306)
                      +........ ...+..+..      ......+...+++. +++++.+ .+..++.  +.+.+.   +     +..+.||+
T Consensus        82 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~~~~~~~~~~d~  158 (495)
T 2wpf_A           82 FGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLG-WGSLESK--NVVVVRETADPKSAVKERLQADH  158 (495)
T ss_dssp             TTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEE
T ss_pred             cCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-EEEEeeC--CEEEEeecCCccCCCCeEEEcCE
Confidence            000000000 000000000      00000112234566 8999877 4666653  556654   3     56799999


Q ss_pred             EEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCcc
Q 021871          166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL  242 (306)
Q Consensus       166 lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~---~~~v~~~~~~~~~  242 (306)
                      ||+|||+.+.. |++++.  +.      ..+++.+.+....+++++|||+|.+|+|+|..+.+.   +.+|+++.+.+.+
T Consensus       159 lViATGs~p~~-p~i~G~--~~------~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  229 (495)
T 2wpf_A          159 ILLATGSWPQM-PAIPGI--EH------CISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI  229 (495)
T ss_dssp             EEECCCEEECC-CCCTTG--GG------CEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             EEEeCCCCcCC-CCCCCc--cc------cccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc
Confidence            99999998874 444432  11      123344443334578999999999999999999999   9999999999998


Q ss_pred             cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          243 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++. +++.+.+.+.+.++++||+++++++|++++..+++.+ .|++.+|+++++|.||+|+|.
T Consensus       230 l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-~v~~~~G~~i~~D~vv~a~G~  290 (495)
T 2wpf_A          230 LRG-FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSK-HVTFESGKTLDVDVVMMAIGR  290 (495)
T ss_dssp             CTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSCE
T ss_pred             ccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceE-EEEECCCcEEEcCEEEECCCC
Confidence            876 7899999999999999999999999999986434443 688899989999999999985

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.94  E-value=2.8e-26  Score=197.74  Aligned_cols=226  Identities=21%  Similarity=0.259  Sum_probs=156.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCChh
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  128 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  128 (306)
                      +++||+|||||++|+++|..|++.|+   +|+|+|+... +        |.+.. ......++++.. ........++..
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~-g--------g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~   73 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQL---STLILEKGMP-G--------GQIAW-SEEVENFPGFPEPIAGMELAQRMHQ   73 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT-T--------GGGGG-CSCBCCSTTCSSCBCHHHHHHHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCC---cEEEEeCCCC-C--------ccccc-ccccccCCCCCCCCCHHHHHHHHHH
Confidence            35799999999999999999999998   9999999832 1        01100 000011111110 000111234455


Q ss_pred             HHhhcCeEEEeCCcEEEEeCC--C---CEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC-C--CCEEEEccHHHHHHH
Q 021871          129 WYKEKGIEMIYQDPVTSIDIE--K---QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY-L--PGVHYIRDVADADAL  200 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~--~---~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~-~--~g~~~~~~~~~~~~~  200 (306)
                      .+++.+++++. .++..++..  .   ..+.+.++..+.||++|+|+|..+.. |.+++.+ .  +++.++.      ..
T Consensus        74 ~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~-~~i~g~~~~~~~~~~~~~------~~  145 (325)
T 2q7v_A           74 QAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK-LGIPGEDNFWGKGVSTCA------TC  145 (325)
T ss_dssp             HHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESCH------HH
T ss_pred             HHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC-CCCCChhhccCceEEEec------cC
Confidence            56778999887 589888865  3   46767777889999999999998764 4455532 1  2333221      11


Q ss_pred             HHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH-HcCCEEEcCceEEEEEeCC
Q 021871          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGS  279 (306)
Q Consensus       201 ~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~  279 (306)
                      ......+++++|+|+|.+|+|+|..|.+.+.+|+++.+.+.+..   .+.    +.+.+. +.||+++++++|+++..  
T Consensus       146 ~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~----~~~~l~~~~gv~i~~~~~v~~i~~--  216 (325)
T 2q7v_A          146 DGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA---NKV----AQARAFANPKMKFIWDTAVEEIQG--  216 (325)
T ss_dssp             HGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS---CHH----HHHHHHTCTTEEEECSEEEEEEEE--
T ss_pred             CHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc---chH----HHHHHHhcCCceEecCCceEEEcc--
Confidence            22344679999999999999999999999999999999887643   333    333444 46999999999999985  


Q ss_pred             CCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871          280 DGRVAAVKLE---DGS--TIDADTVILLPYD  305 (306)
Q Consensus       280 ~~~v~~v~~~---~G~--~i~~d~vv~a~g~  305 (306)
                      ++.+.+|.+.   +|+  ++++|.||+|+|.
T Consensus       217 ~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  247 (325)
T 2q7v_A          217 ADSVSGVKLRNLKTGEVSELATDGVFIFIGH  247 (325)
T ss_dssp             SSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             CCcEEEEEEEECCCCcEEEEEcCEEEEccCC
Confidence            3444466664   675  7899999999985

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.94  E-value=4.3e-25  Score=199.78  Aligned_cols=242  Identities=16%  Similarity=0.195  Sum_probs=166.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc------------------------cCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL------------------------FPLD  105 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~------------------------~~~~  105 (306)
                      +++||+|||||++|+++|.+|++.|+   +|+|+|+++..+-..  ...++.                        .+..
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~~GG~~--~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~   79 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGF---KTVCIEKNETLGGTC--LNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMS   79 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSSSSSHHH--HHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEES
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCcCCcc--cccCccchHHHHHHHHHHHHhhhhhHhhCccccC
Confidence            35799999999999999999999998   999999986532100  000000                        0000


Q ss_pred             CCCCCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCC-C-cEEecCcEEEeeCCCCccCCCC
Q 021871          106 KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-G-KLLKYGSLIVATGCTASRFPEK  180 (306)
Q Consensus       106 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~-g-~~~~~~~lila~G~~~~~~~~~  180 (306)
                      ....+++.+....   .......+..++++.+++++.+. +..++.....+.+.+ + ..+.||+||+|||+.+.. |++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~-p~i  157 (474)
T 1zmd_A           80 EVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGY-GKITGKNQVTATKADGGTQVIDTKNILIATGSEVTP-FPG  157 (474)
T ss_dssp             CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECC-CTT
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCC-CCC
Confidence            0000000000000   00000112345667899998874 445665555666666 4 579999999999998874 445


Q ss_pred             CCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH
Q 021871          181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  260 (306)
Q Consensus       181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (306)
                      ++.+.+++.      ++....+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.++++.+++.+.+.+.+.++
T Consensus       158 ~g~~~~~v~------t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~  231 (474)
T 1zmd_A          158 ITIDEDTIV------SSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQ  231 (474)
T ss_dssp             CCCCSSSEE------CHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHH
T ss_pred             CCCCcCcEE------cHHHHhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHH
Confidence            553322322      23333332335789999999999999999999999999999999999884479999999999999


Q ss_pred             HcCCEEEcCceEEEEEeCCCCcEEEEE-----eCCCCEEecCEEEEecCC
Q 021871          261 QNGVKFVKGASIKNLEAGSDGRVAAVK-----LEDGSTIDADTVILLPYD  305 (306)
Q Consensus       261 ~~gv~i~~~~~v~~i~~~~~~~v~~v~-----~~~G~~i~~d~vv~a~g~  305 (306)
                      +.||+++++++|++++.++++.+ .++     ..+|+++++|.||+|+|.
T Consensus       232 ~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~  280 (474)
T 1zmd_A          232 KQGFKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGR  280 (474)
T ss_dssp             HTTCEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCE
T ss_pred             HCCCEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCC
Confidence            99999999999999997444423 455     356678999999999985

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.94  E-value=4.8e-25  Score=199.17  Aligned_cols=239  Identities=15%  Similarity=0.186  Sum_probs=164.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc-----------------------cCC-CC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL-----------------------FPL-DK  106 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~-----------------------~~~-~~  106 (306)
                      ++||+|||||++|+++|++|++.|+   +|+|+|+++..+-..  ...+++                       .+. ..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~~~GG~~--~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~   76 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGM---KTACVEKRGALGGTC--LNVGCIPSKALLHATHLYHDAHANFARYGLMGGEG   76 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHH--HHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCcCCcC--CCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            4799999999999999999999998   999999986542100  000000                       000 00


Q ss_pred             CCCCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeCCCCccCCCCC
Q 021871          107 KPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKI  181 (306)
Q Consensus       107 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G~~~~~~~~~~  181 (306)
                      ...++..+....   .......+...+++.+++++.++.+ .++.....+.+.+|  ..+.||++|+|||+.+.. |+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~-p~~~  154 (468)
T 2qae_A           77 VTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGS-FETAHSIRVNGLDGKQEMLETKKTIIATGSEPTE-LPFL  154 (468)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-EEETTEEEEEETTSCEEEEEEEEEEECCCEEECC-BTTB
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EeeCCEEEEEecCCceEEEEcCEEEECCCCCcCC-CCCC
Confidence            000000000000   0000011234556678998877544 46665556666677  689999999999998874 4445


Q ss_pred             CCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHH-H
Q 021871          182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-Q  260 (306)
Q Consensus       182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~  260 (306)
                      +.+.+++.      +...+.+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.+ +
T Consensus       155 g~~~~~v~------t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~  227 (468)
T 2qae_A          155 PFDEKVVL------SSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGALAK  227 (468)
T ss_dssp             CCCSSSEE------CHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred             CCCcCcee------chHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-CCHHHHHHHHHHHhh
Confidence            53333332      23333333345789999999999999999999999999999999999885 7999999999999 9


Q ss_pred             HcCCEEEcCceEEEEEeCCCCcEEEEEeC--CC--CEEecCEEEEecCC
Q 021871          261 QNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTVILLPYD  305 (306)
Q Consensus       261 ~~gv~i~~~~~v~~i~~~~~~~v~~v~~~--~G--~~i~~d~vv~a~g~  305 (306)
                      ++||+++++++|++++.++++ + .+.+.  +|  +++++|.||+|+|.
T Consensus       228 ~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~~~g~~~~i~~D~vv~a~G~  274 (468)
T 2qae_A          228 NEKMKFMTSTKVVGGTNNGDS-V-SLEVEGKNGKRETVTCEALLVSVGR  274 (468)
T ss_dssp             HTCCEEECSCEEEEEEECSSS-E-EEEEECC---EEEEEESEEEECSCE
T ss_pred             cCCcEEEeCCEEEEEEEcCCe-E-EEEEEcCCCceEEEECCEEEECCCc
Confidence            999999999999999964333 3 45554  66  57999999999985

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.94  E-value=5.9e-26  Score=206.27  Aligned_cols=243  Identities=17%  Similarity=0.267  Sum_probs=161.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCC---CCccc------------------cccccCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPALT------------------KGYLFPLDKK  107 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~~~------------------~~~~~~~~~~  107 (306)
                      |+++||+|||||++|+++|++|+++|+   +|+|+|+++..+-.   ....+                  ..+-......
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~   99 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGM---KVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANP   99 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCC
Confidence            456899999999999999999999998   99999987654210   00000                  0000000000


Q ss_pred             CCCCCCcccc---cCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeCCCCccCCCCCC
Q 021871          108 PARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIG  182 (306)
Q Consensus       108 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G~~~~~~~~~~~  182 (306)
                      ..++..+...   ........+...+++.+++++.+ ....++.....+...+|  ..+.||+||+|||+.+.   .+|+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~---~ipg  175 (491)
T 3urh_A          100 KLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQG-TGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA---GIPG  175 (491)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECSSSEEEEECTTSCEEEEECSEEEECCCEECC---CBTT
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCC---CCCC
Confidence            0000000000   00000011233456678888866 44445544456666666  47999999999998753   2333


Q ss_pred             CC--CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH
Q 021871          183 GY--LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  260 (306)
Q Consensus       183 ~~--~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (306)
                      ..  .++...    .++.........+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.++
T Consensus       176 ~~~~~~~~~~----~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~  250 (491)
T 3urh_A          176 VEVAFDEKTI----VSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQRMLT  250 (491)
T ss_dssp             BCCCCCSSSE----ECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHHHHH
T ss_pred             cccccCCeeE----EehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHHHHH
Confidence            21  222222    234444444456899999999999999999999999999999999999886 79999999999999


Q ss_pred             HcCCEEEcCceEEEEEeCCCCcEEEEEeCC---C--CEEecCEEEEecCC
Q 021871          261 QNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTVILLPYD  305 (306)
Q Consensus       261 ~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---G--~~i~~d~vv~a~g~  305 (306)
                      +.||+++++++|++++..+++.  .+.+.+   |  +++++|.||+|+|.
T Consensus       251 ~~gV~v~~~~~v~~i~~~~~~~--~v~~~~~~~g~~~~i~~D~Vi~a~G~  298 (491)
T 3urh_A          251 KQGIDFKLGAKVTGAVKSGDGA--KVTFEPVKGGEATTLDAEVVLIATGR  298 (491)
T ss_dssp             HTTCEEECSEEEEEEEEETTEE--EEEEEETTSCCCEEEEESEEEECCCC
T ss_pred             hCCCEEEECCeEEEEEEeCCEE--EEEEEecCCCceEEEEcCEEEEeeCC
Confidence            9999999999999999643333  344442   4  57999999999996

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.94  E-value=2.2e-26  Score=195.58  Aligned_cols=217  Identities=18%  Similarity=0.131  Sum_probs=153.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ++||+|||||++||++|+.|++.|+   +|+|+|++...... +...           ..++.+..........++...+
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~   66 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARK---NILLVDAGERRNRF-ASHS-----------HGFLGQDGKAPGEIIAEARRQI   66 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECCCCGGGG-CSCC-----------CSSTTCTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCccccc-chhh-----------cCCcCCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999999998   99999987532110 0000           0011110000001123344445


Q ss_pred             hhc-CeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCC---CCEEEEccHHHHHHHHHhh
Q 021871          131 KEK-GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL  204 (306)
Q Consensus       131 ~~~-~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~  204 (306)
                      .+. ++.++. .+|..++.+.  +.+.+.++..+.||++|+|+|..+.. |.+++...   .++...      .......
T Consensus        67 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~-~~~~g~~~~~~~~~~~~------~~~~~~~  138 (297)
T 3fbs_A           67 ERYPTIHWVE-GRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDEL-PEIAGLRERWGSAVFHC------PYCHGYE  138 (297)
T ss_dssp             TTCTTEEEEE-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEEC-CCCBTTGGGBTTTEESC------HHHHTGG
T ss_pred             HhcCCeEEEE-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCC-CCCCCchhhcCCeeEEc------ccCcchh
Confidence            555 677764 4899998764  47788888889999999999998763 55555321   222221      1122233


Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEE
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~  284 (306)
                      ..+++++|+|+|.+++|+|..|.+.+ +|+++.+.+..    +.    +.+.+.+++.||+++. ++|++++.  ++   
T Consensus       139 ~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~----~~~~~~l~~~gv~i~~-~~v~~i~~--~~---  203 (297)
T 3fbs_A          139 LDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE----PD----ADQHALLAARGVRVET-TRIREIAG--HA---  203 (297)
T ss_dssp             GTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC----CC----HHHHHHHHHTTCEEEC-SCEEEEET--TE---
T ss_pred             hcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC----CC----HHHHHHHHHCCcEEEc-ceeeeeec--CC---
Confidence            45899999999999999999999998 99999988652    22    3466788899999996 89999984  33   


Q ss_pred             EEEeCCCCEEecCEEEEecCC
Q 021871          285 AVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       285 ~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .|.+.+|+++++|.||+|+|.
T Consensus       204 ~v~~~~g~~~~~D~vi~a~G~  224 (297)
T 3fbs_A          204 DVVLADGRSIALAGLFTQPKL  224 (297)
T ss_dssp             EEEETTSCEEEESEEEECCEE
T ss_pred             eEEeCCCCEEEEEEEEEccCc
Confidence            588899999999999999985

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.94  E-value=1e-26  Score=210.94  Aligned_cols=236  Identities=18%  Similarity=0.259  Sum_probs=163.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-cCCCCCcEEEecc--------CCCCCCCCCccccccc--------------------
Q 021871           51 NREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSK--------EAYAPYERPALTKGYL--------------------  101 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~-~g~~~~~V~vie~--------~~~~~~~~~~~~~~~~--------------------  101 (306)
                      ++||+|||||++|+++|++|++ .|+   +|+|+|+        ....+-  .....|++                    
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~---~V~liE~~~~~~~~~~~~~GG--~c~~~gciPsk~l~~~a~~~~~~~~~~~   77 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKK---RVAVIDLQKHHGPPHYAALGG--TCVNVGCVPKKLMVTGANYMDTIRESAG   77 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCC---CEEEEESCSSSBTTTBSCTTC--HHHHHSHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCC---EEEEEecccccccccCCCcCc--cccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence            5799999999999999999999 998   9999992        222110  00000110                    


Q ss_pred             cCCCC--C--CCCCCCcccccC---CCCCcCChhHHhhc-CeEEEeCCcEEEEeCCCCEEEc-----CCC---cEEecCc
Q 021871          102 FPLDK--K--PARLPGFHTCVG---SGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLIT-----NSG---KLLKYGS  165 (306)
Q Consensus       102 ~~~~~--~--~~~~~~~~~~~~---~~~~~~~~~~~~~~-~v~~~~~~~v~~v~~~~~~v~~-----~~g---~~~~~~~  165 (306)
                      +....  .  ..++..+.....   ......+...+++. +++++.+ .+..++..  .+.+     .++   ..+.||+
T Consensus        78 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~~~--~v~v~~~~~~~g~~~~~~~~d~  154 (490)
T 1fec_A           78 FGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQG-FGALQDNH--TVLVRESADPNSAVLETLDTEY  154 (490)
T ss_dssp             GTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEES-EEEEEETT--EEEEESSSSTTSCEEEEEEEEE
T ss_pred             cCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEe-EEEEeeCC--EEEEEeeccCCCCceEEEEcCE
Confidence            00000  0  000000000000   00001122334567 9999877 46667653  4444     256   6899999


Q ss_pred             EEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCcc
Q 021871          166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL  242 (306)
Q Consensus       166 lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~---~~~v~~~~~~~~~  242 (306)
                      ||+|||+.+.. |++++.  +.      ..+++.+......+++++|||+|.+|+|+|..+.+.   +.+|+++.+.+.+
T Consensus       155 lviAtGs~p~~-p~i~g~--~~------~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  225 (490)
T 1fec_A          155 ILLATGSWPQH-LGIEGD--DL------CITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI  225 (490)
T ss_dssp             EEECCCEEECC-CCSBTG--GG------CBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             EEEeCCCCCCC-CCCCCc--cc------eecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCc
Confidence            99999998874 444432  11      223444444334578999999999999999999999   9999999999998


Q ss_pred             cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          243 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++. +++.+.+.+.+.++++||+++++++|++++.++++.+ .|++.+|+++++|.||+|+|.
T Consensus       226 l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-~v~~~~G~~i~~D~vv~a~G~  286 (490)
T 1fec_A          226 LRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTR-HVVFESGAEADYDVVMLAIGR  286 (490)
T ss_dssp             STT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSCE
T ss_pred             ccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEE-EEEECCCcEEEcCEEEEccCC
Confidence            885 7899999999999999999999999999996444444 688899989999999999985

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.94  E-value=2.9e-26  Score=206.99  Aligned_cols=250  Identities=16%  Similarity=0.124  Sum_probs=153.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcC-----CCCCcEEEeccCCCCCCCCCccccccccCCC--------CCCCCCCCccc
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHG-----MADGRLCIVSKEAYAPYERPALTKGYLFPLD--------KKPARLPGFHT  116 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g-----~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~  116 (306)
                      ..+||+|||||++||++|..|++.|     .   +|+|+|+.+..+|.......+......        ..+.....|..
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~---~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~  105 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGAL---EVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVN  105 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCC---CEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcc---cEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhH
Confidence            3579999999999999999999999     6   999999998876543222111111000        00000000000


Q ss_pred             c-c-----------------CCCCCcCChhHHhhcCeEEEeCCcEEEEeCC---CC----EEEcCCCc----EEecCcEE
Q 021871          117 C-V-----------------GSGGERQTPEWYKEKGIEMIYQDPVTSIDIE---KQ----TLITNSGK----LLKYGSLI  167 (306)
Q Consensus       117 ~-~-----------------~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~---~~----~v~~~~g~----~~~~~~li  167 (306)
                      . .                 ......++....+++++.++++++|.+++..   ..    .+.+.++.    .+.||+||
T Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lV  185 (463)
T 3s5w_A          106 YLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALV  185 (463)
T ss_dssp             HHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEE
T ss_pred             hhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEE
Confidence            0 0                 0000012223334567788889899999875   33    56665654    79999999


Q ss_pred             EeeCCCCccCCC-CCCCCCC-CEEEEccHHH-HHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCcc
Q 021871          168 VATGCTASRFPE-KIGGYLP-GVHYIRDVAD-ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL  242 (306)
Q Consensus       168 la~G~~~~~~~~-~~~~~~~-g~~~~~~~~~-~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~--~~~v~~~~~~~~~  242 (306)
                      +|+|..+.. |. +++.... .+.+.....+ ...+......+++|+|||+|.+|+|+|..|.+.  +.+|+++.|.+.+
T Consensus       186 lAtG~~p~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          186 VSPGGTPRI-PQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             ECCCCEECC-CGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             ECCCCCCCC-cchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            999997663 43 2221111 2333322222 111111112578999999999999999999998  8899999999876


Q ss_pred             cccc--------c-----------CHHHHHHHHHHHHH--------------------------cCCEEEcCceEEEEEe
Q 021871          243 LQRL--------F-----------TPSLAQRYEQLYQQ--------------------------NGVKFVKGASIKNLEA  277 (306)
Q Consensus       243 ~~~~--------~-----------~~~~~~~~~~~~~~--------------------------~gv~i~~~~~v~~i~~  277 (306)
                      .+..        +           ++.....+.+.+..                          .||+++.++.|++++.
T Consensus       265 ~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~  344 (463)
T 3s5w_A          265 KPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATA  344 (463)
T ss_dssp             CBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEE
T ss_pred             cCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEe
Confidence            5421        1           11111222222111                          5999999999999986


Q ss_pred             CCCCcEEEEEeC---CCCE--EecCEEEEecCC
Q 021871          278 GSDGRVAAVKLE---DGST--IDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~---~G~~--i~~d~vv~a~g~  305 (306)
                      . ++.+ .|.+.   +|+.  +++|.||+|||.
T Consensus       345 ~-~~~~-~v~~~~~~~g~~~~~~~D~Vv~AtG~  375 (463)
T 3s5w_A          345 T-AQGI-ELALRDAGSGELSVETYDAVILATGY  375 (463)
T ss_dssp             E-TTEE-EEEEEETTTCCEEEEEESEEEECCCE
T ss_pred             c-CCEE-EEEEEEcCCCCeEEEECCEEEEeeCC
Confidence            4 3443 46655   6754  999999999995

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.94  E-value=3.3e-26  Score=209.21  Aligned_cols=183  Identities=16%  Similarity=0.142  Sum_probs=120.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHH-HcCCCCCcEEEeccCCCCCC-----CCCcc---ccccccCCCCC-----CCCCCCccc
Q 021871           51 NREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPY-----ERPAL---TKGYLFPLDKK-----PARLPGFHT  116 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~-~~g~~~~~V~vie~~~~~~~-----~~~~~---~~~~~~~~~~~-----~~~~~~~~~  116 (306)
                      .+||+|||||++|+++|+.|+ +.|+   +|+|+|+++..+-     ..+..   .....+.....     ...+... .
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~---~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~-~   83 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGL---TTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTT-Y   83 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---CEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBS-E
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCC---CEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCccc-C
Confidence            479999999999999999999 8887   9999999865430     11111   00001100000     0000000 0


Q ss_pred             ccCCCCCcCChhHHhhcCe--EEEeCCcEEEEeCCCC----EEEcCCCcEEecCcEEEeeCC--CCccCCCCCCCC-CCC
Q 021871          117 CVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LPG  187 (306)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~v~~~~~----~v~~~~g~~~~~~~lila~G~--~~~~~~~~~~~~-~~g  187 (306)
                      ....+...++...+++.++  +++++++|.+++.+..    .+.+++|..+.||+||+|+|.  .+. .|.++|.+ ..+
T Consensus        84 ~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~g  162 (540)
T 3gwf_A           84 ITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAIN-FPNLPGLDTFEG  162 (540)
T ss_dssp             EEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBC-CCCCTTGGGCCS
T ss_pred             CCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCC-CCCCCCccccCC
Confidence            0001112344555667787  7888999999987554    788888888999999999995  555 45555532 334


Q ss_pred             EEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      .......+    .......+++|+|||+|.+|+|+|..|++.+.+|++++|.+.+
T Consensus       163 ~~~~~~~~----~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  213 (540)
T 3gwf_A          163 ETIHTAAW----PEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQY  213 (540)
T ss_dssp             EEEEGGGC----CSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCC
T ss_pred             CEEEeecC----CCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            32221111    1112245899999999999999999999999999999999884

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.94  E-value=2.4e-25  Score=197.85  Aligned_cols=226  Identities=22%  Similarity=0.233  Sum_probs=164.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHH---cCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           52 REFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~---~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      +||+|||||++||++|.+|++   .|+   +|+|+|+++...+.. ....  .......           ..+....+..
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~---~V~vie~~~~~~~~~-~~~~--~~~~~~~-----------~~~~~~~~~~   64 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKA---DVKVINKSRFSYFRP-ALPH--VAIGVRD-----------VDELKVDLSE   64 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGS---EEEEEESSSEEEECC-SSCC--CCSSCCC-----------CCCEEEEHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCC---eEEEEeCCCCceecc-chhh--cccCCcC-----------HHHHHHHHHH
Confidence            689999999999999999999   777   999999998654331 1110  0000000           0111345666


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcE----EecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhh
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL----LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  204 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~----~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  204 (306)
                      .+++.+++++.+ +|..++.+.+.+.+.++..    +.||+||+|+|..+.. |.+++... ....+....+...+.+.+
T Consensus        65 ~~~~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~-~~ipG~~~-~~~~~~~~~~~~~~~~~l  141 (409)
T 3h8l_A           65 ALPEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLAT-ELVKGWDK-YGYSVCEPEFATKLREKL  141 (409)
T ss_dssp             HTGGGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECG-GGSBTHHH-HCEESSSTTHHHHHHHHH
T ss_pred             HHhhCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCc-cCCCChhh-cCcCcCCHHHHHHHHHHH
Confidence            777889999877 9999999888888877653    9999999999998764 44443211 223344455555555544


Q ss_pred             hc-CCeEEEEcCCH-------------------------HHHHHHH----HHHhCC----CcEEEEecCCcccccccCHH
Q 021871          205 EK-AKKVVVVGGGY-------------------------IGMEVAA----AAVGWK----LDTTIIFPENHLLQRLFTPS  250 (306)
Q Consensus       205 ~~-~~~v~viG~g~-------------------------~a~e~a~----~l~~~~----~~v~~~~~~~~~~~~~~~~~  250 (306)
                      .. .++++|||+|.                         .++|+|.    .+.+.+    .+|+++.+.+ .++. +++.
T Consensus       142 ~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~-~~~~  219 (409)
T 3h8l_A          142 ESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSD-LSPN  219 (409)
T ss_dssp             HHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTT-BCHH
T ss_pred             HHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccc-cCHH
Confidence            43 25677999991                         3566664    455666    3899999988 5554 6889


Q ss_pred             HHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       251 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.+.+.+.++++||+++++++|++++.  +    +|.+++|+++++|.+|+|+|.
T Consensus       220 ~~~~~~~~l~~~gV~~~~~~~v~~i~~--~----~v~~~~g~~~~~D~vi~a~G~  268 (409)
T 3h8l_A          220 SRKAVASIYNQLGIKLVHNFKIKEIRE--H----EIVDEKGNTIPADITILLPPY  268 (409)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEECS--S----EEEETTSCEEECSEEEEECCE
T ss_pred             HHHHHHHHHHHCCCEEEcCCceEEECC--C----eEEECCCCEEeeeEEEECCCC
Confidence            999999999999999999999999984  2    477889999999999999985

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.94  E-value=4.6e-25  Score=200.76  Aligned_cols=240  Identities=16%  Similarity=0.189  Sum_probs=167.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc---CCCCCcEEEeccCCCCCCC---CCccccccccC--------CCCCCCCCC----
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYE---RPALTKGYLFP--------LDKKPARLP----  112 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~---g~~~~~V~vie~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~~----  112 (306)
                      ++||+|||||++|+++|++|+++   |+   +|+|+|+++ .+-.   ....+...+..        .......++    
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~---~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~   77 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETT---QVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFD   77 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTE---EEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC----
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcC---EEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccC
Confidence            47999999999999999999999   87   999999986 2200   00000000000        000000000    


Q ss_pred             ----CcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeC------CCCEEEcCCCc--EEecCcEEEeeCCCC
Q 021871          113 ----GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDI------EKQTLITNSGK--LLKYGSLIVATGCTA  174 (306)
Q Consensus       113 ----~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~------~~~~v~~~~g~--~~~~~~lila~G~~~  174 (306)
                          .+.....      ......+..++++.+++++.+ .+..++.      ....+..+++.  .+.||++|+|||+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p  156 (499)
T 1xdi_A           78 DAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAG-RGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASP  156 (499)
T ss_dssp             --CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence                0000000      000011345566789999887 4666776      22345556665  799999999999988


Q ss_pred             ccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHH
Q 021871          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  254 (306)
Q Consensus       175 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~  254 (306)
                      .. |++++.+..++....+.      .+....+++++|||+|.+|+|+|..+...+.+|+++.+.+.+++. +++.+.+.
T Consensus       157 ~~-p~i~g~~~~~v~~~~~~------~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~  228 (499)
T 1xdi_A          157 RI-LPSAQPDGERILTWRQL------YDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADAALV  228 (499)
T ss_dssp             CC-CGGGCCCSSSEEEGGGG------GGCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHHHHH
T ss_pred             CC-CCCCCCCcCcEEehhHh------hhhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHH
Confidence            74 55565444444332222      222235789999999999999999999999999999999999886 79999999


Q ss_pred             HHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       255 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.+.+++.||+++++++|++++.+ ++.+ .|++.+|+++++|.||+|+|.
T Consensus       229 l~~~l~~~GV~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~aD~Vv~a~G~  277 (499)
T 1xdi_A          229 LEESFAERGVRLFKNARAASVTRT-GAGV-LVTMTDGRTVEGSHALMTIGS  277 (499)
T ss_dssp             HHHHHHHTTCEEETTCCEEEEEEC-SSSE-EEEETTSCEEEESEEEECCCE
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEe-CCEE-EEEECCCcEEEcCEEEECCCC
Confidence            999999999999999999999963 4444 577888889999999999985

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.94  E-value=1.4e-25  Score=203.18  Aligned_cols=240  Identities=16%  Similarity=0.233  Sum_probs=164.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc----------------------------
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL----------------------------  101 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~----------------------------  101 (306)
                      +.+||+|||||++|+++|++|++.|+   +|+|+|+++..+-.  ...+|.+                            
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~gG~--~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~   76 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGL---KTALIEKYKGKEGK--TALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLH   76 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEECCBCTTSS--BCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCC---EEEEEeCCCccCCC--CCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45899999999999999999999998   99999998632100  0000000                            


Q ss_pred             -cCCCCCCCCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeCCCCc
Q 021871          102 -FPLDKKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTAS  175 (306)
Q Consensus       102 -~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G~~~~  175 (306)
                       ........+++......   .......+...+++.+++++.+ .+..++.....+...++  ..+.||++|+|||+.+.
T Consensus        77 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~  155 (476)
T 3lad_A           77 GISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEG-HGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPV  155 (476)
T ss_dssp             TEECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-EEEECSTTCEEEECTTSCEEEECCSCEEECCCEEEC
T ss_pred             CcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCC
Confidence             00000000000000000   0000011223455678998876 44445655556776676  47999999999999877


Q ss_pred             cCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHH
Q 021871          176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY  255 (306)
Q Consensus       176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  255 (306)
                      .+| .++.+.+.+.      ++..+.+....+++++|||+|.+++|+|..+...+.+|+++.+.+.+++. +++.+.+.+
T Consensus       156 ~~~-~~~~~~~~v~------~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l  227 (476)
T 3lad_A          156 EIP-PAPVDQDVIV------DSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEA  227 (476)
T ss_dssp             CCT-TSCCCSSSEE------EHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHH
T ss_pred             CCC-CCCCCcccEE------echhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-cCHHHHHHH
Confidence            443 2222223332      23333333446789999999999999999999999999999999999885 799999999


Q ss_pred             HHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC---CEEecCEEEEecCC
Q 021871          256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTVILLPYD  305 (306)
Q Consensus       256 ~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G---~~i~~d~vv~a~g~  305 (306)
                      .+.++++||++++++.|++++.+ ++.+ .+.+.++   +++++|.||+|+|.
T Consensus       228 ~~~l~~~Gv~v~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~~~D~vi~a~G~  278 (476)
T 3lad_A          228 QKILTKQGLKILLGARVTGTEVK-NKQV-TVKFVDAEGEKSQAFDKLIVAVGR  278 (476)
T ss_dssp             HHHHHHTTEEEEETCEEEEEEEC-SSCE-EEEEESSSEEEEEEESEEEECSCE
T ss_pred             HHHHHhCCCEEEECCEEEEEEEc-CCEE-EEEEEeCCCcEEEECCEEEEeeCC
Confidence            99999999999999999999974 4333 3555544   57999999999985

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.93  E-value=1e-25  Score=192.99  Aligned_cols=226  Identities=17%  Similarity=0.194  Sum_probs=155.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCChhHH
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY  130 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  130 (306)
                      +||+|||||++|+++|..|++.|+.  +|+|+|++...+         .+... .....++++.. ........++...+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~--~v~lie~~~~gg---------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~   69 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVK--NAVLFEKGMPGG---------QITGS-SEIENYPGVKEVVSGLDFMQPWQEQC   69 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCS--SEEEECSSSTTC---------GGGGC-SCBCCSTTCCSCBCHHHHHHHHHHHH
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCC--cEEEEcCCCCCc---------ccccc-cccccCCCCcccCCHHHHHHHHHHHH
Confidence            6999999999999999999999863  799999963211         11000 00011121111 00011123344556


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHHhhh
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLE  205 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~  205 (306)
                      .+.+++++. .+|..++.+..  .+.+.++..+.||++|+|+|..+.. |.+++..   .+++.++.      .......
T Consensus        70 ~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~-~~~~g~~~~~~~~~~~~~------~~~~~~~  141 (311)
T 2q0l_A           70 FRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKR-TGIKGESEYWGKGVSTCA------TCDGFFY  141 (311)
T ss_dssp             HTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECC-CCCBTHHHHBTTTEESCH------HHHGGGG
T ss_pred             HHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCC-CCCCChhhccCCcEEEee------cCChhhc
Confidence            677899887 68999887655  6667778889999999999988763 4444421   12333221      1222345


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH-HcCCEEEcCceEEEEEeCCCCcEE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVA  284 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~v~  284 (306)
                      .+++++|+|+|.+++|+|..+.+.+.+|+++.+.+.+..   ++.    +.+.+. +.||++++++.|+++.. +++.+.
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~----~~~~l~~~~gv~v~~~~~v~~i~~-~~~~v~  213 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRC---API----TLEHAKNNDKIEFLTPYVVEEIKG-DASGVS  213 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCS---CHH----HHHHHHTCTTEEEETTEEEEEEEE-ETTEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCC---CHH----HHHHHhhCCCeEEEeCCEEEEEEC-CCCcEe
Confidence            679999999999999999999999999999999887632   433    344454 47999999999999986 334444


Q ss_pred             EEEeC---CCC--EEecCEEEEecCC
Q 021871          285 AVKLE---DGS--TIDADTVILLPYD  305 (306)
Q Consensus       285 ~v~~~---~G~--~i~~d~vv~a~g~  305 (306)
                      +|.+.   +|+  ++++|.||+|+|.
T Consensus       214 ~v~~~~~~~g~~~~i~~D~vi~a~G~  239 (311)
T 2q0l_A          214 SLSIKNTATNEKRELVVPGFFIFVGY  239 (311)
T ss_dssp             EEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             EEEEEecCCCceEEEecCEEEEEecC
Confidence            56665   675  6899999999985

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.93  E-value=5.7e-26  Score=196.63  Aligned_cols=228  Identities=17%  Similarity=0.268  Sum_probs=154.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccc-cCCCCCcCCh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQTP  127 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  127 (306)
                      ++.+||+|||||++|+++|+.|++.|+   +|+|+|+....+         .+.. ......+|++... .......++.
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg---------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~   78 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQL---APLVFEGTSFGG---------ALMT-TTDVENYPGFRNGITGPELMDEMR   78 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTC---CCEEECCSSCSC---------GGGS-CSCBCCSTTCTTCBCHHHHHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC---------ceec-cchhhhcCCCCCCCCHHHHHHHHH
Confidence            456899999999999999999999998   999999752211         1100 0001112222110 0011123445


Q ss_pred             hHHhhcCeEEEeCCcEEEEeCC-CCEE-EcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHH
Q 021871          128 EWYKEKGIEMIYQDPVTSIDIE-KQTL-ITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS  202 (306)
Q Consensus       128 ~~~~~~~v~~~~~~~v~~v~~~-~~~v-~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~  202 (306)
                      ..+.+.+++++.+. +..++.. ...+ .+.++..+.||+||+|+|..+.. |.+++..   .+++..+      .....
T Consensus        79 ~~~~~~~v~~~~~~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~-~~i~g~~~~~~~~~~~~------~~~~~  150 (335)
T 2a87_A           79 EQALRFGADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARY-LQVPGEQELLGRGVSSC------ATCDG  150 (335)
T ss_dssp             HHHHHTTCEEECCC-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECC-CCCTHHHHTBTTTEESC------HHHHG
T ss_pred             HHHHHcCCEEEEee-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccC-CCCCchHhccCCceEEe------eccch
Confidence            55677899998875 8888873 3467 77778889999999999998764 4444321   1222221      12223


Q ss_pred             hhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCc
Q 021871          203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  282 (306)
Q Consensus       203 ~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~  282 (306)
                      ....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+..   ...+   ..+.+++.||++++++.|++++.+ + .
T Consensus       151 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~---~~~~~~~~gV~v~~~~~v~~i~~~-~-~  222 (335)
T 2a87_A          151 FFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SKIM---LDRARNNDKIRFLTNHTVVAVDGD-T-T  222 (335)
T ss_dssp             GGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTH---HHHHHHCTTEEEECSEEEEEEECS-S-S
T ss_pred             hhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHH---HHHHhccCCcEEEeCceeEEEecC-C-c
Confidence            345689999999999999999999999999999999887643   2111   123456789999999999999953 3 3


Q ss_pred             EEEEEeC---CC--CEEecCEEEEecCC
Q 021871          283 VAAVKLE---DG--STIDADTVILLPYD  305 (306)
Q Consensus       283 v~~v~~~---~G--~~i~~d~vv~a~g~  305 (306)
                      +.+|.+.   +|  +.+++|.||+|+|.
T Consensus       223 ~~~v~~~~~~~g~~~~i~~D~vi~a~G~  250 (335)
T 2a87_A          223 VTGLRVRDTNTGAETTLPVTGVFVAIGH  250 (335)
T ss_dssp             CCEEEEEEETTSCCEEECCSCEEECSCE
T ss_pred             EeEEEEEEcCCCceEEeecCEEEEccCC
Confidence            3244443   45  47999999999985

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.93  E-value=4.8e-26  Score=205.49  Aligned_cols=240  Identities=20%  Similarity=0.260  Sum_probs=161.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC--CCCccccc-ccc-----CC---CCCCCCCC-----Cc
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPALTKG-YLF-----PL---DKKPARLP-----GF  114 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~~~~~-~~~-----~~---~~~~~~~~-----~~  114 (306)
                      ++||+|||||++|+++|..|++.|+   +|+|+|++...+.  .....+.. ++.     ..   ......++     .+
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~---~V~liE~~~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGL---STAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDY   79 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCH
Confidence            4799999999999999999999998   9999999732100  00000000 000     00   00000000     00


Q ss_pred             ccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeCCCCccCCCCCCCCCC
Q 021871          115 HTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLP  186 (306)
Q Consensus       115 ~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G~~~~~~~~~~~~~~~  186 (306)
                      .....      ......+...+++.+++++.++.+. ++.+...+.+.+|  ..+.||++|+|+|+.+.. |+.++.+..
T Consensus        80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~-~~~~g~~~~  157 (464)
T 2a8x_A           80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-ADANTLLVDLNDGGTESVTFDNAIIATGSSTRL-VPGTSLSAN  157 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-SSSSEEEEEETTSCCEEEEEEEEEECCCEEECC-CTTCCCBTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCCCCce
Confidence            00000      0000112345666789998775443 4433345666667  689999999999998864 444442211


Q ss_pred             CEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEE
Q 021871          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (306)
Q Consensus       187 g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  266 (306)
                       +  +    +..........+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.++++||++
T Consensus       158 -~--~----~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i  229 (464)
T 2a8x_A          158 -V--V----TYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-EDADVSKEIEKQFKKLGVTI  229 (464)
T ss_dssp             -E--E----CHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEE
T ss_pred             -E--E----ecHHHhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHcCCEE
Confidence             1  1    23333332335789999999999999999999999999999999999885 79999999999999999999


Q ss_pred             EcCceEEEEEeCCCCcEEEEEeC-CC--CEEecCEEEEecCC
Q 021871          267 VKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTVILLPYD  305 (306)
Q Consensus       267 ~~~~~v~~i~~~~~~~v~~v~~~-~G--~~i~~d~vv~a~g~  305 (306)
                      ++++.|++++.+ ++.+ .+.+. +|  +++++|.||+|+|.
T Consensus       230 ~~~~~v~~i~~~-~~~~-~v~~~~~g~~~~~~~D~vv~a~G~  269 (464)
T 2a8x_A          230 LTATKVESIADG-GSQV-TVTVTKDGVAQELKAEKVLQAIGF  269 (464)
T ss_dssp             ECSCEEEEEEEC-SSCE-EEEEESSSCEEEEEESEEEECSCE
T ss_pred             EeCcEEEEEEEc-CCeE-EEEEEcCCceEEEEcCEEEECCCC
Confidence            999999999963 3333 45554 56  57999999999985

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.93  E-value=9.9e-26  Score=203.45  Aligned_cols=236  Identities=18%  Similarity=0.210  Sum_probs=165.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc-----------------cCCCCCCCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL-----------------FPLDKKPARLPG  113 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~  113 (306)
                      .+||+|||||++|+++|++|++.|+   +|+|+|+++..+-..  ...+++                 ........+++.
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~---~V~liEk~~~~GG~~--~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~   78 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKY---NVLMADPKGELGGNC--LYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFST   78 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECTTSSSSHHH--HHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCC---eEEEEECCCCCCCcc--cccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHH
Confidence            4799999999999999999999998   999999776543100  000010                 000011111111


Q ss_pred             cccccCC--CCC--cCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcE--EecCcEEEeeCCCCccCCCCCCCCCCC
Q 021871          114 FHTCVGS--GGE--RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL--LKYGSLIVATGCTASRFPEKIGGYLPG  187 (306)
Q Consensus       114 ~~~~~~~--~~~--~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~--~~~~~lila~G~~~~~~~~~~~~~~~g  187 (306)
                      +......  ...  ..+...+++.+++++.+ ++..++.....+...++..  +.||++|+|||+.+.. |++++     
T Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~-p~i~G-----  151 (466)
T 3l8k_A           79 VQDRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAK-LRLPG-----  151 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECC-CCCTT-----
T ss_pred             HHHHHHhheeccccchHHHHHHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccC-CCCCC-----
Confidence            0000000  000  12233445578998876 7888887767788888877  9999999999998774 44444     


Q ss_pred             EEEEccHHHHHHHH----HhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcC
Q 021871          188 VHYIRDVADADALI----SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  263 (306)
Q Consensus       188 ~~~~~~~~~~~~~~----~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  263 (306)
                      ..   .+.+.+.+.    .....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+++++..+++.+.+.+.+.++   
T Consensus       152 ~~---~~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---  225 (466)
T 3l8k_A          152 VE---YCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---  225 (466)
T ss_dssp             GG---GSBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---
T ss_pred             cc---ceEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---
Confidence            22   123344444    22235789999999999999999999999999999999999987448888888888776   


Q ss_pred             CEEEcCceEEEEEeCCCCcEEEEEeC--CCC--EEecCEEEEecCC
Q 021871          264 VKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTVILLPYD  305 (306)
Q Consensus       264 v~i~~~~~v~~i~~~~~~~v~~v~~~--~G~--~i~~d~vv~a~g~  305 (306)
                      |+++.++.|++++..+++.+ .+.+.  +|+  ++++|.||+|+|.
T Consensus       226 v~i~~~~~v~~i~~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G~  270 (466)
T 3l8k_A          226 LNIKFNSPVTEVKKIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAGR  270 (466)
T ss_dssp             CCEECSCCEEEEEEEETTEE-EEEECCTTSCCEEEEESCEEECCCE
T ss_pred             EEEEECCEEEEEEEcCCCcE-EEEEEecCCceEEEEcCEEEECcCC
Confidence            99999999999986431444 47776  676  7999999999985

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.93  E-value=2e-25  Score=191.31  Aligned_cols=230  Identities=20%  Similarity=0.241  Sum_probs=154.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..|||+|||||||||+||.+|+++|+   +|+|+|+...-+   ...+.+++       .++|++......+........
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~---~V~liE~~~~gG---~~~~~~~i-------~~~p~~~~~~~~~~~~~~~~~   71 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANL---KTVMIERGIPGG---QMANTEEV-------ENFPGFEMITGPDLSTKMFEH   71 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTG---GGGGCSCB-------CCSTTCSSBCHHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCC---eeeccccc-------CCcCCccccchHHHHHHHHHH
Confidence            45899999999999999999999998   999999864311   00011111       223333222211222233444


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCC---CCEEEEccHHHHHHHHHhhhc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLEK  206 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~  206 (306)
                      ..+....+.....+...+.........++..+.||++|+|||+.+.. |++|+.+.   .++.++      .........
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~-~~ipG~~~~~~~~v~~~------~~~~~~~~~  144 (312)
T 4gcm_A           72 AKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKK-IGVPGEQELGGRGVSYC------AVCDGAFFK  144 (312)
T ss_dssp             HHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESC------HHHHGGGGT
T ss_pred             HhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCc-CCCCChhhhCCccEEee------eccCccccC
Confidence            55667777767666666666667777788899999999999999874 55665332   233322      222233456


Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCc--EE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR--VA  284 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~--v~  284 (306)
                      +++++|||+|++|+|+|..+++.+.+|+++.+.+.+.+.   .   ....+.+++.++.......+..+...+...  ..
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQ---R---ILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVT  218 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSC---H---HHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcc---h---hHHHHHHHhcCcceeeecceeeeeccccccccce
Confidence            899999999999999999999999999999999887763   1   223456677889988888777766432211  11


Q ss_pred             EEEeCC--CCEEecCEEEEecCC
Q 021871          285 AVKLED--GSTIDADTVILLPYD  305 (306)
Q Consensus       285 ~v~~~~--G~~i~~d~vv~a~g~  305 (306)
                      .....+  +..+++|.|++++|.
T Consensus       219 ~~~~~~~~~~~~~~d~v~~~~g~  241 (312)
T 4gcm_A          219 LTSTKDGSEETHEADGVFIYIGM  241 (312)
T ss_dssp             EEETTTCCEEEEECSEEEECSCE
T ss_pred             eeeecCCceeEEeeeeEEeecCC
Confidence            122222  347899999999874

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.93  E-value=2.1e-26  Score=207.73  Aligned_cols=238  Identities=19%  Similarity=0.323  Sum_probs=164.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-CCC-Ccc-----------------ccccccCCCCCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YER-PAL-----------------TKGYLFPLDKKPARL  111 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~-~~~-----------------~~~~~~~~~~~~~~~  111 (306)
                      .+||+|||||++|+++|++|+++|+   +|+|+|+...-+ +.. ...                 ...+.+.......++
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~---~V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGK---KVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDW   81 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCC---EEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCH
Confidence            5899999999999999999999998   999999943211 000 000                 000000000000111


Q ss_pred             CCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEc-CCCcEEecCcEEEeeCCCCccCCCCCCCCCCC
Q 021871          112 PGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPG  187 (306)
Q Consensus       112 ~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~-~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g  187 (306)
                      +.+....   .......+..++++.++++..+ .+..++  ...+.+ .++..+.||++|+|||+.+...|++     +|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i-----~G  153 (463)
T 4dna_A           82 AKLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELAG--PNTVKLLASGKTVTAERIVIAVGGHPSPHDAL-----PG  153 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEESS--SSEEEETTTTEEEEEEEEEECCCEEECCCTTS-----TT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEee--CCEEEEecCCeEEEeCEEEEecCCCcccCCCC-----CC
Confidence            0000000   0000112233455568888876 554443  456666 5677899999999999987623443     33


Q ss_pred             EEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEE
Q 021871          188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  267 (306)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~  267 (306)
                      ...   ..+++.++.....+++++|+|+|.+++|+|..+...+.+|+++.+.+.+++. +++.+.+.+.+.++++||+++
T Consensus       154 ~~~---~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~  229 (463)
T 4dna_A          154 HEL---CITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDMRRGLHAAMEEKGIRIL  229 (463)
T ss_dssp             GGG---CBCHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEE
T ss_pred             ccc---cccHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEEE
Confidence            321   2234444444445889999999999999999999999999999999998875 799999999999999999999


Q ss_pred             cCceEEEEEeCCCCcEEEEE-eCCCCEEecCEEEEecCC
Q 021871          268 KGASIKNLEAGSDGRVAAVK-LEDGSTIDADTVILLPYD  305 (306)
Q Consensus       268 ~~~~v~~i~~~~~~~v~~v~-~~~G~~i~~d~vv~a~g~  305 (306)
                      ++++|++++.++++.+ .|. +.+|+ +++|.||+|+|.
T Consensus       230 ~~~~v~~i~~~~~~~~-~v~~~~~g~-i~aD~Vv~a~G~  266 (463)
T 4dna_A          230 CEDIIQSVSADADGRR-VATTMKHGE-IVADQVMLALGR  266 (463)
T ss_dssp             CSCCEEEEEECTTSCE-EEEESSSCE-EEESEEEECSCE
T ss_pred             CCCEEEEEEEcCCCEE-EEEEcCCCe-EEeCEEEEeeCc
Confidence            9999999997545544 688 88887 999999999985

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.93  E-value=6.5e-26  Score=194.36  Aligned_cols=238  Identities=19%  Similarity=0.223  Sum_probs=156.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccccc-CCCCCcCChh
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV-GSGGERQTPE  128 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  128 (306)
                      +.+||+|||||||||+||.+|+++|+   +|+|+|+....+..    .+|++.. .....++|+|+... ..++...+..
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~---~v~liE~~~~gg~~----~~G~~~~-~~~i~~~~g~~~~i~~~~l~~~~~~   74 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSL---KPVMYEGFMAGGVA----AGGQLTT-TTIIENFPGFPNGIDGNELMMNMRT   74 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSGGGCC----TTCGGGG-SSEECCSTTCTTCEEHHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCCcc----cCCCcCC-hHHhhhccCCcccCCHHHHHHHHHH
Confidence            46899999999999999999999998   99999987543211    1233322 11122344443211 1112234445


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhc
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  206 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  206 (306)
                      .+++.+..+... .+.......  ..+.+.++..+.||++|+|||+.++. |++|+.+.............+. ......
T Consensus        75 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~-~~ipG~~~~~~~~~~~~~~~~~-~~~~~~  151 (314)
T 4a5l_A           75 QSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKR-MHVPGEDKYWQNGVSACAICDG-AVPIFR  151 (314)
T ss_dssp             HHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECC-CCCTTHHHHBTTTEESCHHHHT-TSGGGT
T ss_pred             HHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccccc-cCCCccccccccceeeehhhhh-hhhhcC
Confidence            566778887754 566655543  35667778899999999999998874 4444422111000111112221 122345


Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  286 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v  286 (306)
                      +++++|||+|.+|+|+|..+++++.+|+++.|.+....   ..   ....+.....+++.+..+.+..+... +....++
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~  224 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SK---TMQERVLNHPKIEVIWNSELVELEGD-GDLLNGA  224 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CH---HHHHHHHTCTTEEEECSEEEEEEEES-SSSEEEE
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cc---hhhhhhhcccceeeEeeeeeEEEEee-eecccee
Confidence            78999999999999999999999999999998876544   22   22345556678999999999888863 3333334


Q ss_pred             Ee-----CCCCEEecCEEEEecCC
Q 021871          287 KL-----EDGSTIDADTVILLPYD  305 (306)
Q Consensus       287 ~~-----~~G~~i~~d~vv~a~g~  305 (306)
                      ..     .+++++++|.|++|+|.
T Consensus       225 ~~~~~~~~~~~~i~~d~vi~a~G~  248 (314)
T 4a5l_A          225 KIHNLVSGEYKVVPVAGLFYAIGH  248 (314)
T ss_dssp             EEEETTTCCEEEEECSEEEECSCE
T ss_pred             EEeecccccceeeccccceEeccc
Confidence            33     33457999999999985

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.93  E-value=7.8e-25  Score=197.12  Aligned_cols=236  Identities=19%  Similarity=0.274  Sum_probs=161.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcccccccc-----------CC-CCCCCCCC------C
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF-----------PL-DKKPARLP------G  113 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~------~  113 (306)
                      +||+|||||++|+++|.+|++.|+   +|+|+|+++..+-.  ....++..           .. ......++      .
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~---~V~lie~~~~~GG~--~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~   76 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGM---KVGVVEKEKALGGT--CLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELD   76 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHH--HHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEEC
T ss_pred             CCEEEECCChhHHHHHHHHHHCCC---eEEEEeCCCCCCCc--cceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccC
Confidence            699999999999999999999998   99999998643210  00000000           00 00000000      0


Q ss_pred             cccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcC-CCcEEecCcEEEeeCCCCccCCCCCCCCCC
Q 021871          114 FHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLP  186 (306)
Q Consensus       114 ~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~-~g~~~~~~~lila~G~~~~~~~~~~~~~~~  186 (306)
                      +..+..      ......+..++++.+++++.+..+ .++  ...+.+. ++..+.||++|+|||+.+.. |+.++.+.+
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~--~~~~~v~~~g~~~~~d~lviAtG~~p~~-~~~~g~~~~  152 (455)
T 2yqu_A           77 LPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTAR-FLS--ERKVLVEETGEELEARYILIATGSAPLI-PPWAQVDYE  152 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE-ESS--SSEEEETTTCCEEEEEEEEECCCEEECC-CTTBCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Eec--CCeEEEeeCCEEEEecEEEECCCCCCCC-CCCCCCCcC
Confidence            000000      000011234456678999877543 333  3333333 56789999999999998774 444443222


Q ss_pred             CEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEE
Q 021871          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (306)
Q Consensus       187 g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  266 (306)
                      ++.      +.....+....+++++|||+|.+|+++|..+.+.+.+|+++.+.+.+++. .++.+.+.+.+.+++.||++
T Consensus       153 ~v~------~~~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i  225 (455)
T 2yqu_A          153 RVV------TSTEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEVSRAAERVFKKQGLTI  225 (455)
T ss_dssp             SEE------CHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHHTCEE
T ss_pred             cEe------chHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-cCHHHHHHHHHHHHHCCCEE
Confidence            322      23333322235789999999999999999999999999999999998875 78899999999999999999


Q ss_pred             EcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          267 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       267 ~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +++++|++++.+ ++.+ .+++.+|+++++|.||+|+|.
T Consensus       226 ~~~~~V~~i~~~-~~~v-~v~~~~g~~i~~D~vv~A~G~  262 (455)
T 2yqu_A          226 RTGVRVTAVVPE-AKGA-RVELEGGEVLEADRVLVAVGR  262 (455)
T ss_dssp             ECSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECSCE
T ss_pred             EECCEEEEEEEe-CCEE-EEEECCCeEEEcCEEEECcCC
Confidence            999999999963 3333 577778889999999999985

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.93  E-value=3.5e-26  Score=207.39  Aligned_cols=238  Identities=21%  Similarity=0.279  Sum_probs=164.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-CCC-Ccc-----------------ccccccCCCCCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YER-PAL-----------------TKGYLFPLDKKPARL  111 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~-~~~-----------------~~~~~~~~~~~~~~~  111 (306)
                      .+||+|||||++||++|++|+++|+   +|+|+|+...-+ +.. ...                 ..++.+.......++
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~  102 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGK---RVAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNW  102 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcC---EEEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence            5799999999999999999999998   999999943211 000 000                 000001100000110


Q ss_pred             CCcccc---cCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcC-CCcEEecCcEEEeeCCCCccCCCCCCCCCCC
Q 021871          112 PGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPG  187 (306)
Q Consensus       112 ~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~-~g~~~~~~~lila~G~~~~~~~~~~~~~~~g  187 (306)
                      +.+...   ........+...+++.++++..+ .+..++.  ..+.+. ++..+.||++++|+|+.+...|.+++     
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G-----  174 (484)
T 3o0h_A          103 EKLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVDE--HTLELSVTGERISAEKILIATGAKIVSNSAIKG-----  174 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEET--TEEEETTTCCEEEEEEEEECCCEEECCC--CBT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeC--CEEEEecCCeEEEeCEEEEccCCCcccCCCCCC-----
Confidence            000000   00000112234455678998876 5656653  456665 67789999999999998762344443     


Q ss_pred             EEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEE
Q 021871          188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  267 (306)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~  267 (306)
                      ...+   .+++.+......+++++|+|+|.+++++|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.+++.||+++
T Consensus       175 ~~~~---~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~  250 (484)
T 3o0h_A          175 SDLC---LTSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN-FDYDLRQLLNDAMVAKGISII  250 (484)
T ss_dssp             GGGS---BCTTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEE
T ss_pred             cccc---ccHHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-cCHHHHHHHHHHHHHCCCEEE
Confidence            2111   122222223345889999999999999999999999999999999998876 789999999999999999999


Q ss_pred             cCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       268 ~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++++|++++.+ ++.+ .|.+.+|+++++|.||+|+|.
T Consensus       251 ~~~~V~~i~~~-~~~v-~v~~~~g~~i~aD~Vi~A~G~  286 (484)
T 3o0h_A          251 YEATVSQVQST-ENCY-NVVLTNGQTICADRVMLATGR  286 (484)
T ss_dssp             SSCCEEEEEEC-SSSE-EEEETTSCEEEESEEEECCCE
T ss_pred             eCCEEEEEEee-CCEE-EEEECCCcEEEcCEEEEeeCC
Confidence            99999999974 4444 688999989999999999985

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.93  E-value=1.3e-25  Score=194.10  Aligned_cols=239  Identities=18%  Similarity=0.233  Sum_probs=155.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCChh
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  128 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  128 (306)
                      +++||+|||||++|+++|+.|++.|+   +|+|+|+.....    ....+.+... .....+|.+.. .........+..
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~---~v~lie~~~~~~----~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~   78 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAEL---KPLLFEGWMAND----IAPGGQLTTT-TDVENFPGFPEGILGVELTDKFRK   78 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTT----BCTTCGGGGC-SEECCSTTCTTCEEHHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeccCccc----cCCCceeeec-cccccCCCCccCCCHHHHHHHHHH
Confidence            34799999999999999999999998   999999821110    0011111100 00111222211 000111234445


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCC-CCEEEEccHHHHHHHHHhh-
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL-PGVHYIRDVADADALISSL-  204 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~-  204 (306)
                      .+.+.+++++.++ +..++....  .+.+ ++..++||++|+|+|..+.. |.+++... .+.+..+.+..+....... 
T Consensus        79 ~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  155 (333)
T 1vdc_A           79 QSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKR-LSFVGSGEVLGGFWNRGISACAVCDGAAP  155 (333)
T ss_dssp             HHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECC-CCCBTCSSSSSCCBTTTEESCHHHHTTSG
T ss_pred             HHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCC-CCCCCccccccccccCcEEEeccCccchh
Confidence            5667899998875 888887544  6666 67789999999999998764 44555322 1101001111111222222 


Q ss_pred             -hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCC-c
Q 021871          205 -EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-R  282 (306)
Q Consensus       205 -~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~  282 (306)
                       ..+++++|+|+|.+++|+|..|.+.+.+|+++.+.+.+..   .+.+   ..+.+++.||++++++.|++++.++++ .
T Consensus       156 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~---~~~~~~~~gv~i~~~~~v~~i~~~~~~~~  229 (333)
T 1vdc_A          156 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIM---QQRALSNPKIDVIWNSSVVEAYGDGERDV  229 (333)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEESSSSSS
T ss_pred             hcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHH---HHHHHhCCCeeEecCCceEEEeCCCCccc
Confidence             5688999999999999999999999999999999987643   2222   224456789999999999999963321 4


Q ss_pred             EEEEEeC---CC--CEEecCEEEEecCC
Q 021871          283 VAAVKLE---DG--STIDADTVILLPYD  305 (306)
Q Consensus       283 v~~v~~~---~G--~~i~~d~vv~a~g~  305 (306)
                      +.+|.+.   +|  +++++|.||+|+|.
T Consensus       230 v~~v~~~~~~~g~~~~i~~D~vi~a~G~  257 (333)
T 1vdc_A          230 LGGLKVKNVVTGDVSDLKVSGLFFAIGH  257 (333)
T ss_dssp             EEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             eeeEEEEecCCCceEEEecCEEEEEeCC
Confidence            4445554   45  47999999999985

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.93  E-value=1.9e-25  Score=195.78  Aligned_cols=241  Identities=18%  Similarity=0.224  Sum_probs=155.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-----CCCC-c-ccccc---ccCCCC---CCCC-CCCcc
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-----YERP-A-LTKGY---LFPLDK---KPAR-LPGFH  115 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-----~~~~-~-~~~~~---~~~~~~---~~~~-~~~~~  115 (306)
                      +.+||+|||||++|+++|++|++.|+.  +|+|+|+++ .+     +... . ....+   .+....   .... .+.+.
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~--~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   79 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDFGIT--DVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFT   79 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC--CEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHH
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHcCCC--cEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhcccccccccc
Confidence            347999999999999999999999863  799999986 22     1000 0 00000   000000   0000 00000


Q ss_pred             c----ccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCC--CCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEE
Q 021871          116 T----CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVH  189 (306)
Q Consensus       116 ~----~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~--~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~  189 (306)
                      .    ........++...+++.+++++++++|.+++.+  ...+.+.++ .+.||+||+|+|..+.  |.+|+   ....
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~--p~ip~---~~~~  153 (369)
T 3d1c_A           80 FNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF--PKKPF---KYGI  153 (369)
T ss_dssp             HCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS--BCCCS---SSCE
T ss_pred             ccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc--cCCCC---Ccee
Confidence            0    000000122344456689999999999999875  346776666 5899999999999865  33333   1222


Q ss_pred             EEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------ccCHHHHHHHHHHHHHcC
Q 021871          190 YIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSLAQRYEQLYQQNG  263 (306)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g  263 (306)
                      +...+.+.     ....+++|+|||+|.+|+|+|..|.+.+.+|+++.+.+.+.+.      .+++.+.+.+.+.+++.|
T Consensus       154 ~~~~~~~~-----~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g  228 (369)
T 3d1c_A          154 HYSEIEDF-----DNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGA  228 (369)
T ss_dssp             EGGGCSCG-----GGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTC
T ss_pred             chhhcCCh-----hhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCC
Confidence            22111111     1124679999999999999999999999999999999877632      145677788889999997


Q ss_pred             -CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEe-cCEEEEecCCC
Q 021871          264 -VKFVKGASIKNLEAGSDGRVAAVKLEDGSTID-ADTVILLPYDQ  306 (306)
Q Consensus       264 -v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~-~d~vv~a~g~~  306 (306)
                       |+++.++.|.+++.. ++.+ .|.+.+|+.+. +|.||+|+|..
T Consensus       229 ~v~~~~~~~v~~i~~~-~~~~-~v~~~~g~~~~~~d~vi~a~G~~  271 (369)
T 3d1c_A          229 RIEMNVHYTVKDIDFN-NGQY-HISFDSGQSVHTPHEPILATGFD  271 (369)
T ss_dssp             CEEEECSCCEEEEEEE-TTEE-EEEESSSCCEEESSCCEECCCBC
T ss_pred             cEEEecCcEEEEEEec-CCce-EEEecCCeEeccCCceEEeeccC
Confidence             999999999999752 3333 57788897775 59999999963

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.93  E-value=1.1e-24  Score=196.89  Aligned_cols=241  Identities=19%  Similarity=0.288  Sum_probs=164.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc-----------------------cCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL-----------------------FPLD  105 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~-----------------------~~~~  105 (306)
                      +.++||+|||||++|+++|.+|++.|+   +|+|+|+++..+-..  ...++.                       ....
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~---~V~liE~~~~~GG~~--~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~   78 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGF---KTTCIEKRGALGGTC--LNVGCIPSKALLHSSHMYHEAKHSFANHGVKVS   78 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSSCCSH--HHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEES
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCccccc--cCcCccchHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            346899999999999999999999998   999999986542110  000000                       0000


Q ss_pred             CCCCCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeCCCCccCCCC
Q 021871          106 KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEK  180 (306)
Q Consensus       106 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G~~~~~~~~~  180 (306)
                      ....++..+....   .......+...+++.+++++.++.+. ++.....+.+.+|  ..++||++|+|+|+.+.. |++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~-p~~  156 (470)
T 1dxl_A           79 NVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VSPSEISVDTIEGENTVVKGKHIIIATGSDVKS-LPG  156 (470)
T ss_dssp             CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EETTEEEECCSSSCCEEEECSEEEECCCEEECC-BTT
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCEEEEEeCCCceEEEEcCEEEECCCCCCCC-CCC
Confidence            0000000000000   00000112344566789999886553 6654445555566  689999999999998874 444


Q ss_pred             CCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH
Q 021871          181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  260 (306)
Q Consensus       181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (306)
                      ++.+.+++.      +.....+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.++
T Consensus       157 ~g~~~~~v~------~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~  229 (470)
T 1dxl_A          157 VTIDEKKIV------SSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLE  229 (470)
T ss_dssp             BCCCSSSEE------CHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHH
T ss_pred             CCCCcccEE------eHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-ccHHHHHHHHHHHH
Confidence            443333332      23333332235789999999999999999999999999999999999885 78999999999999


Q ss_pred             HcCCEEEcCceEEEEEeCCCCcEEEEEeC---CC--CEEecCEEEEecCC
Q 021871          261 QNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTVILLPYD  305 (306)
Q Consensus       261 ~~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G--~~i~~d~vv~a~g~  305 (306)
                      +.||+++++++|.+++.++++ + .+.+.   +|  +++++|.||+|+|.
T Consensus       230 ~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~~~~g~~~~~~~D~vv~a~G~  277 (470)
T 1dxl_A          230 KQGMKFKLKTKVVGVDTSGDG-V-KLTVEPSAGGEQTIIEADVVLVSAGR  277 (470)
T ss_dssp             HSSCCEECSEEEEEEECSSSS-E-EEEEEESSSCCCEEEEESEEECCCCE
T ss_pred             HcCCEEEeCCEEEEEEEcCCe-E-EEEEEecCCCcceEEECCEEEECCCC
Confidence            999999999999999964333 3 35543   44  57999999999985

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.93  E-value=2.3e-25  Score=200.61  Aligned_cols=234  Identities=23%  Similarity=0.311  Sum_probs=161.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc----------------------cCCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL----------------------FPLDKKP  108 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~----------------------~~~~~~~  108 (306)
                      ++||+|||||++|+++|.+|++.|+   +|+|+|++. .+-  .....+++                      .......
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~-~gG--~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~   76 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQ---KVTIVEKGN-LGG--VCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVT   76 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC-TTH--HHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEECCC-CCC--cCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCc
Confidence            4799999999999999999999998   999999973 210  00000000                      0000000


Q ss_pred             CCCCCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC-cEEecCcEEEeeCCCCccCCCCC
Q 021871          109 ARLPGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKI  181 (306)
Q Consensus       109 ~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g-~~~~~~~lila~G~~~~~~~~~~  181 (306)
                      .+   +..+..      ......+...+++.+++++.++.+ .++.....+.+.++ ..+.||++|+|||+.+.. |+++
T Consensus        77 ~~---~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~-~~~~  151 (455)
T 1ebd_A           77 ID---FAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAY-FVDANTVRVVNGDSAQTYTFKNAIIATGSRPIE-LPNF  151 (455)
T ss_dssp             EC---HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEE-EEETTEEEEEETTEEEEEECSEEEECCCEEECC-BTTB
T ss_pred             cC---HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EccCCeEEEEeCCCcEEEEeCEEEEecCCCCCC-CCCC
Confidence            00   000000      000011234556678999888544 46655556666666 679999999999998874 3344


Q ss_pred             CCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH
Q 021871          182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  261 (306)
Q Consensus       182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (306)
                      +.+.. +  +    +.....+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.+++
T Consensus       152 g~~~~-v--~----~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~  223 (455)
T 1ebd_A          152 KFSNR-I--L----DSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKK  223 (455)
T ss_dssp             CCCSS-E--E----CHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred             Cccce-E--e----cHHHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHHHHHHHHHHHH
Confidence            42211 1  1    23333333335789999999999999999999999999999999998885 789999999999999


Q ss_pred             cCCEEEcCceEEEEEeCCCCcEEEEEeC---CCCEEecCEEEEecCC
Q 021871          262 NGVKFVKGASIKNLEAGSDGRVAAVKLE---DGSTIDADTVILLPYD  305 (306)
Q Consensus       262 ~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G~~i~~d~vv~a~g~  305 (306)
                      .||++++++.|++++.+ ++.+ .+.+.   +|+++++|.||+|+|.
T Consensus       224 ~gv~i~~~~~v~~i~~~-~~~~-~v~~~~~g~~~~~~~D~vv~a~G~  268 (455)
T 1ebd_A          224 KGVEVVTNALAKGAEER-EDGV-TVTYEANGETKTIDADYVLVTVGR  268 (455)
T ss_dssp             TTCEEEESEEEEEEEEE-TTEE-EEEEEETTEEEEEEESEEEECSCE
T ss_pred             CCCEEEeCCEEEEEEEe-CCeE-EEEEEeCCceeEEEcCEEEECcCC
Confidence            99999999999999863 3333 35543   4567999999999985

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.93  E-value=2.6e-25  Score=201.45  Aligned_cols=241  Identities=18%  Similarity=0.259  Sum_probs=160.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc-----------cCC---CCCCCCCC----
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL-----------FPL---DKKPARLP----  112 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~~----  112 (306)
                      .+||+|||||++|+++|..|++.|+   +|+|+|+++..+-.  ....+++           +..   ......++    
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~--~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~   79 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGF---NTACVEKRGKLGGT--CLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGD   79 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHH--HHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCcCCc--cceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            4799999999999999999999998   99999996543200  0000000           000   00000000    


Q ss_pred             ---CcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cE------EecCcEEEeeCCCCc
Q 021871          113 ---GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KL------LKYGSLIVATGCTAS  175 (306)
Q Consensus       113 ---~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~------~~~~~lila~G~~~~  175 (306)
                         .+.....      ......+...+++.+++++.++.+. .+.....+.+.+|  ..      +.||+||+|+|+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~  158 (478)
T 1v59_A           80 IKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF-EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT  158 (478)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCC
Confidence               0000000      0000012344567899998886554 2333335555566  46      999999999998874


Q ss_pred             cCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHH
Q 021871          176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY  255 (306)
Q Consensus       176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  255 (306)
                      .+   |+...++.    .+.+++...+....+++++|||+|.+|+|+|..+++.+.+|+++.+.+.+++. +++.+.+.+
T Consensus       159 ~~---~g~~~~~~----~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l  230 (478)
T 1v59_A          159 PF---PGIEIDEE----KIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKAT  230 (478)
T ss_dssp             CC---TTCCCCSS----SEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHH
T ss_pred             CC---CCCCCCCc----eEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-cCHHHHHHH
Confidence            32   33223331    12233333332235789999999999999999999999999999999999884 799999999


Q ss_pred             HHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-----CCCEEecCEEEEecCC
Q 021871          256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----DGSTIDADTVILLPYD  305 (306)
Q Consensus       256 ~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-----~G~~i~~d~vv~a~g~  305 (306)
                      .+.+++.||+++++++|++++..+++....|.+.     +|+++++|.||+|+|.
T Consensus       231 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~  285 (478)
T 1v59_A          231 QKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR  285 (478)
T ss_dssp             HHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred             HHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCC
Confidence            9999999999999999999985112322356654     3567999999999985

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.93  E-value=2.9e-25  Score=200.29  Aligned_cols=234  Identities=19%  Similarity=0.248  Sum_probs=161.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-C-CCCcccccc-c--------------cCC-CCCCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-Y-ERPALTKGY-L--------------FPL-DKKPARLP  112 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~-~~~~~~~~~-~--------------~~~-~~~~~~~~  112 (306)
                      .+||+|||||++|+++|.+|++.|+   +|+|+|+++.-+ + .....+... +              +.. .....+  
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~---~V~lie~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~--   80 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGL---KVLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELD--   80 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEEC--
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcC--
Confidence            5899999999999999999999998   999999986210 0 000000000 0              000 000000  


Q ss_pred             CcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCC
Q 021871          113 GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP  186 (306)
Q Consensus       113 ~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~  186 (306)
                       +.....      ......+..++++.+++++.+..+ .++  .+.+.+. +..+.||+||+|||+.+..+|.+++.  .
T Consensus        81 -~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~--~~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~--~  153 (464)
T 2eq6_A           81 -LKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFAR-LVG--PKEVEVG-GERYGAKSLILATGSEPLELKGFPFG--E  153 (464)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEE-EEE--TTEEEET-TEEEEEEEEEECCCEEECCBTTBCCS--S
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEE-Ecc--CCEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCC--C
Confidence             000000      000001233456689999887544 354  3566666 66899999999999988754423331  1


Q ss_pred             CEEEEccHHHHHHHHHhhh-cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCE
Q 021871          187 GVHYIRDVADADALISSLE-KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  265 (306)
Q Consensus       187 g~~~~~~~~~~~~~~~~~~-~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  265 (306)
                      .+  +    +.+.+.+... .+++++|||+|.+|+|+|..+++.+.+|+++.+.+.+++. +++.+.+.+.+.++++||+
T Consensus       154 ~v--~----~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gV~  226 (464)
T 2eq6_A          154 DV--W----DSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-GDPETAALLRRALEKEGIR  226 (464)
T ss_dssp             SE--E----CHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCE
T ss_pred             cE--E----cHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhcCCE
Confidence            22  1    3333333233 5789999999999999999999999999999999998885 7899999999999999999


Q ss_pred             EEcCceEEEEEeCCCCcEEEEEeC-C--CC--EEecCEEEEecCC
Q 021871          266 FVKGASIKNLEAGSDGRVAAVKLE-D--GS--TIDADTVILLPYD  305 (306)
Q Consensus       266 i~~~~~v~~i~~~~~~~v~~v~~~-~--G~--~i~~d~vv~a~g~  305 (306)
                      ++++++|++++.+ ++.+ .|++. +  |+  ++++|.||+|+|.
T Consensus       227 i~~~~~v~~i~~~-~~~~-~v~~~~~~~g~~~~i~~D~vv~a~G~  269 (464)
T 2eq6_A          227 VRTKTKAVGYEKK-KDGL-HVRLEPAEGGEGEEVVVDKVLVAVGR  269 (464)
T ss_dssp             EECSEEEEEEEEE-TTEE-EEEEEETTCCSCEEEEESEEEECSCE
T ss_pred             EEcCCEEEEEEEe-CCEE-EEEEeecCCCceeEEEcCEEEECCCc
Confidence            9999999999863 3333 46665 6  76  8999999999985

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.93  E-value=6.9e-26  Score=206.84  Aligned_cols=243  Identities=19%  Similarity=0.250  Sum_probs=159.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccc------cc--------------------c
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------YL--------------------F  102 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~------~~--------------------~  102 (306)
                      +..+||+|||||++|+++|.+|++.|+   +|+|+|+.+...+......+|      ++                    +
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~  106 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGK---KVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNY  106 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhc
Confidence            346899999999999999999999998   999999865221111000111      00                    0


Q ss_pred             CCCCCCCCCCCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCC
Q 021871          103 PLDKKPARLPGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTA  174 (306)
Q Consensus       103 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~  174 (306)
                      ...........+.....      ......+...+++.+++++.+ .+..++.....+...+|.  .+.||+||+|||+.+
T Consensus       107 g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g-~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p  185 (519)
T 3qfa_A          107 GWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENA-YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP  185 (519)
T ss_dssp             TBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEE
T ss_pred             CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCc
Confidence            00000000001110000      000001112345578888765 566677666667666664  799999999999988


Q ss_pred             ccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHH
Q 021871          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  254 (306)
Q Consensus       175 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~  254 (306)
                      .. |+     ++|...  ...+++.+.+....+++++|||+|.+|+|+|..+.+.+.+|+++.+. .+++. +++++.+.
T Consensus       186 ~~-p~-----i~G~~~--~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~  255 (519)
T 3qfa_A          186 RY-LG-----IPGDKE--YCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDMANK  255 (519)
T ss_dssp             CC-CC-----CTTHHH--HCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHHHHH
T ss_pred             CC-CC-----CCCccC--ceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccccc-CCHHHHHH
Confidence            74 44     444210  01234444443445788999999999999999999999999999985 55554 68999999


Q ss_pred             HHHHHHHcCCEEEcCceEEEEEeCCC---Cc-EEEEEeCCCC---EEecCEEEEecCC
Q 021871          255 YEQLYQQNGVKFVKGASIKNLEAGSD---GR-VAAVKLEDGS---TIDADTVILLPYD  305 (306)
Q Consensus       255 ~~~~~~~~gv~i~~~~~v~~i~~~~~---~~-v~~v~~~~G~---~i~~d~vv~a~g~  305 (306)
                      +.+.++++||++++++.+++++..++   +. ...+...+|+   .+++|.||+|+|.
T Consensus       256 ~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~  313 (519)
T 3qfa_A          256 IGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGR  313 (519)
T ss_dssp             HHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCE
T ss_pred             HHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCC
Confidence            99999999999999988888765322   32 2234445553   5689999999985

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.93  E-value=4e-25  Score=202.45  Aligned_cols=185  Identities=17%  Similarity=0.138  Sum_probs=120.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC-----CCCcc---ccccccCCCCC-----CCCCCCccc
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-----ERPAL---TKGYLFPLDKK-----PARLPGFHT  116 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-----~~~~~---~~~~~~~~~~~-----~~~~~~~~~  116 (306)
                      +.+||+|||||++|+++|.+|++.|+   +|+|+|+++..+-     ..+..   .....+...-.     ...+... .
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~---~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~-~   95 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGL---TVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEK-Y   95 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSS-S
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCC---CEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccC-C
Confidence            45799999999999999999999998   9999999875430     00110   00000000000     0000000 0


Q ss_pred             ccCCCCCcCChhHHhhcCe--EEEeCCcEEEEeCCCC----EEEcCCCcEEecCcEEEeeC--CCCccCCCCCCCC-CCC
Q 021871          117 CVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LPG  187 (306)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~v~~~~~----~v~~~~g~~~~~~~lila~G--~~~~~~~~~~~~~-~~g  187 (306)
                      ....+...++...+++.++  +++++++|.+++.+..    .+.+.+|..+.||+||+|+|  +.+. .|.++|.+ ..+
T Consensus        96 ~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~g  174 (549)
T 4ap3_A           96 ATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN-TPAFDGLDRFTG  174 (549)
T ss_dssp             CBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC-CCCCTTGGGCCS
T ss_pred             CCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCCC
Confidence            0001112344455667777  7888999999986554    78888888899999999999  5555 45555533 334


Q ss_pred             EEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      .......+..+   .....+++|+|||+|.+|+|+|..|++.+.+|++++|.+.+
T Consensus       175 ~~~~~~~~~~~---~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          175 DIVHTARWPHD---GVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             EEEEGGGCCTT---CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             ceEEecccccc---ccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            33221111100   11225899999999999999999999999999999999875

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.93  E-value=2.9e-26  Score=209.80  Aligned_cols=189  Identities=15%  Similarity=0.144  Sum_probs=118.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC-----CCCcc----c---cccccCCCC-CCCCCCCcc
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-----ERPAL----T---KGYLFPLDK-KPARLPGFH  115 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-----~~~~~----~---~~~~~~~~~-~~~~~~~~~  115 (306)
                      +..+||+|||||++|+++|++|++.|+   +|+|+|+++..+-     ..+..    .   .++.+.... ....+....
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~---~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~   83 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGM---KVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENF   83 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccC
Confidence            345799999999999999999999998   8999999876431     00100    0   000000000 000010000


Q ss_pred             cccCCCCCcCChhHHhhcCe--EEEeCCcEEEEeCCCC----EEEcCCCcEEecCcEEEeeC--CCCccCCCCCCCC-CC
Q 021871          116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LP  186 (306)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~v~~~~~----~v~~~~g~~~~~~~lila~G--~~~~~~~~~~~~~-~~  186 (306)
                       ....+...++...+++.++  +++++++|.+++.+..    .|.+++|..+.||+||+|+|  +.+. .|.++|.+ ..
T Consensus        84 -~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~-~p~ipG~~~f~  161 (545)
T 3uox_A           84 -ASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR-MPDIKGIDSFK  161 (545)
T ss_dssp             -CBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC----CCCTTGGGCC
T ss_pred             -CCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc-CCCCCCccccC
Confidence             0001112344455666676  6788999999986543    78888998999999999999  5555 35555532 33


Q ss_pred             CEEEEccHHHHH--HHH-HhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          187 GVHYIRDVADAD--ALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       187 g~~~~~~~~~~~--~~~-~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      +.......+..+  ... .....+++|+|||+|.+|+|+|..|++.+.+|++++|.+.+
T Consensus       162 g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          162 GESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             SEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            332221111100  000 01235789999999999999999999999999999999874

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.93  E-value=4e-25  Score=200.43  Aligned_cols=242  Identities=22%  Similarity=0.324  Sum_probs=160.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-------CCCCccccccc--------------------
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTKGYL--------------------  101 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~~~~~~~~~~--------------------  101 (306)
                      +..+||+|||||++|+++|++|++.|+   +|+|+|+.....       +.....+.++.                    
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~   83 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGA---RVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAA   83 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---EEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHh
Confidence            346899999999999999999999998   999999532110       11000000100                    


Q ss_pred             cCCCCCCCCCCCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc-EEecCcEEEeeCCCC
Q 021871          102 FPLDKKPARLPGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTA  174 (306)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~-~~~~~~lila~G~~~  174 (306)
                      +...........+.....      ..........+++.++++..+ ....++.....+.+.++. .+.||++|+|||+.+
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p  162 (483)
T 3dgh_A           84 YGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYING-LGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRP  162 (483)
T ss_dssp             TTBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEECCCEEE
T ss_pred             cCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCc
Confidence            000000000001100000      000001112345568888755 555566555566666664 799999999999988


Q ss_pred             ccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHH
Q 021871          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  254 (306)
Q Consensus       175 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~  254 (306)
                      .. |+     ++|....  ..+++.+......+++++|||+|.+|+|+|..+.+.+.+|+++.+. .+++. +++++.+.
T Consensus       163 ~~-p~-----i~G~~~~--~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~~~~  232 (483)
T 3dgh_A          163 RY-PD-----IPGAVEY--GITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLRG-FDQQMAEL  232 (483)
T ss_dssp             CC-CS-----STTHHHH--CBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSSTT-SCHHHHHH
T ss_pred             CC-CC-----CCCcccc--cCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCCcc-cCHHHHHH
Confidence            74 44     4443100  1133444443345789999999999999999999999999999984 45554 68999999


Q ss_pred             HHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC-----EEecCEEEEecCC
Q 021871          255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTVILLPYD  305 (306)
Q Consensus       255 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~-----~i~~d~vv~a~g~  305 (306)
                      +.+.++++||++++++.|.+++..+++.+ .|.+.+++     ++++|.||+|+|.
T Consensus       233 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~  287 (483)
T 3dgh_A          233 VAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGR  287 (483)
T ss_dssp             HHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCE
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECccc
Confidence            99999999999999999999997555544 46666553     7999999999985

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.93  E-value=4.1e-26  Score=206.82  Aligned_cols=237  Identities=16%  Similarity=0.216  Sum_probs=161.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCC---CCccc-----------------cccccCCCCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPALT-----------------KGYLFPLDKKPAR  110 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~~~-----------------~~~~~~~~~~~~~  110 (306)
                      .+||+|||||++|+++|++|++.|+   +|+|+|+++..+-.   ....+                 ..+-........+
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~   82 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGL---KVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELD   82 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccC
Confidence            4799999999999999999999998   99999996553200   00000                 0000000000000


Q ss_pred             CCCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC------------cEEecCcEEEeeCC
Q 021871          111 LPGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG------------KLLKYGSLIVATGC  172 (306)
Q Consensus       111 ~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g------------~~~~~~~lila~G~  172 (306)
                         +.....      ......+...+++.+++++.++.+. ++.....+.+.++            ..++||++|+|+|+
T Consensus        83 ---~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs  158 (482)
T 1ojt_A           83 ---IDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGS  158 (482)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCE
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCC
Confidence               000000      0000012244566789988775443 4433233443444            57999999999999


Q ss_pred             CCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHH
Q 021871          173 TASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA  252 (306)
Q Consensus       173 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~  252 (306)
                      .+..+|.++. + ..+.      +.....+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+++++. +++.+.
T Consensus       159 ~p~~~~~i~~-~-~~v~------~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~  229 (482)
T 1ojt_A          159 RVTKLPFIPE-D-PRII------DSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLV  229 (482)
T ss_dssp             EECCCSSCCC-C-TTEE------CHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHH
T ss_pred             CCCCCCCCCc-c-CcEE------cHHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-cCHHHH
Confidence            9875442331 1 1221      33333332335789999999999999999999999999999999999886 799999


Q ss_pred             HHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC----CCEEecCEEEEecCC
Q 021871          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED----GSTIDADTVILLPYD  305 (306)
Q Consensus       253 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~----G~~i~~d~vv~a~g~  305 (306)
                      +.+.+.++++||++++++.|++++.+ ++.+ .|.+.+    |+++++|.||+|+|.
T Consensus       230 ~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~~~g~~~~~D~vv~a~G~  284 (482)
T 1ojt_A          230 KVWQKQNEYRFDNIMVNTKTVAVEPK-EDGV-YVTFEGANAPKEPQRYDAVLVAAGR  284 (482)
T ss_dssp             HHHHHHHGGGEEEEECSCEEEEEEEE-TTEE-EEEEESSSCCSSCEEESCEEECCCE
T ss_pred             HHHHHHHHhcCCEEEECCEEEEEEEc-CCeE-EEEEeccCCCceEEEcCEEEECcCC
Confidence            99999999999999999999999863 3332 566666    778999999999985

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.93  E-value=2.2e-25  Score=190.30  Aligned_cols=221  Identities=13%  Similarity=0.124  Sum_probs=144.7

Q ss_pred             cCCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc---ccCCCCC
Q 021871           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT---CVGSGGE  123 (306)
Q Consensus        47 ~~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  123 (306)
                      ++|+.+||+|||||||||+||.+|+++|+   +|+|+|++...+         .+..      .+++|..   ....+..
T Consensus         2 n~M~~yDVvIIGaGpAGlsAA~~lar~g~---~v~lie~~~~gg---------~~~~------~~~~~~~~~~~~~~~~~   63 (304)
T 4fk1_A            2 NAMKYIDCAVIGAGPAGLNASLVLGRARK---QIALFDNNTNRN---------RVTQ------NSHGFITRDGIKPEEFK   63 (304)
T ss_dssp             ----CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSCCGG---------GGSS------CBCCSTTCTTBCHHHHH
T ss_pred             CCCCCcCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCC---------eeee------ecCCccCCCCCCHHHHH
Confidence            35778999999999999999999999998   999999874321         1100      0011100   0000000


Q ss_pred             cCChhHHhhcC-eEEEeCCcEEEEeCC---CCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHH
Q 021871          124 RQTPEWYKEKG-IEMIYQDPVTSIDIE---KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVAD  196 (306)
Q Consensus       124 ~~~~~~~~~~~-v~~~~~~~v~~v~~~---~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~  196 (306)
                      ......+.+++ +.+... .+..+...   ...+.+.+++.+.||+||+|||+.++. |++|+.+   ..++.+      
T Consensus        64 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~-p~i~G~~~~~~~~v~~------  135 (304)
T 4fk1_A           64 EIGLNEVMKYPSVHYYEK-TVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEF-PSIPNVREYYGKSLFS------  135 (304)
T ss_dssp             HHHHHHHTTSTTEEEEEC-CEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEEC-CSCTTHHHHBTTTEES------
T ss_pred             HHHHHHHHhcCCEEEEee-EEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCcccc-ccccCccccccceeee------
Confidence            11122233333 455443 55555432   347888889999999999999999874 5544421   122222      


Q ss_pred             HHHHHHhhhcCCeEEEEcCCHH-HHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          197 ADALISSLEKAKKVVVVGGGYI-GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       197 ~~~~~~~~~~~~~v~viG~g~~-a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      +.........+++++|||+|.. +.++|..+...+.+|+++.+.+.+..         .+.+.+++.|++++.++ ++.+
T Consensus       136 ~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~---------~~~~~l~~~g~~~~~~~-v~~~  205 (304)
T 4fk1_A          136 CPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQ---------TIMDELSNKNIPVITES-IRTL  205 (304)
T ss_dssp             CHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCCH---------HHHHHHHTTTCCEECSC-EEEE
T ss_pred             ccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccchh---------hhhhhhhccceeEeeee-EEEe
Confidence            2222333445778888888865 67888888889999999988765432         35667888999999874 7777


Q ss_pred             EeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          276 EAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      .. +++++..|++.+|+++++|.+|+++|
T Consensus       206 ~~-~~~~~~~v~~~~g~~i~~~~~vi~~g  233 (304)
T 4fk1_A          206 QG-EGGYLKKVEFHSGLRIERAGGFIVPT  233 (304)
T ss_dssp             ES-GGGCCCEEEETTSCEECCCEEEECCE
T ss_pred             ec-CCCeeeeeeccccceeeecceeeeec
Confidence            74 56677789999999999998888765

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.93  E-value=2.2e-24  Score=196.95  Aligned_cols=228  Identities=20%  Similarity=0.246  Sum_probs=161.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...+||+|||||++|+++|.+|++.|+   +|+++|+...          |.+.... ....++.+...........+..
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~---~v~lie~~~G----------G~~~~~~-~~~~~~~~~~~~~~~l~~~l~~  275 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGI---RTGLMGERFG----------GQVLDTV-DIENYISVPKTEGQKLAGALKA  275 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSTT----------GGGTTCS-CBCCBTTBSSBCHHHHHHHHHH
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCC---eEEEEECCCC----------Ccccccc-cccccCCCCCCCHHHHHHHHHH
Confidence            346899999999999999999999998   9999986421          1110000 0001111110000111234455


Q ss_pred             HHhhcCeEEEeCCcEEEEeCC-----CCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHH
Q 021871          129 WYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADAL  200 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~-----~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~  200 (306)
                      .+++.+++++.+++|..++.+     ...+.+++|..+.||++|+|+|..+.. +.+|+..   ..++.++...      
T Consensus       276 ~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~-~~ipG~~~~~~~~v~~~~~~------  348 (521)
T 1hyu_A          276 HVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN-MNVPGEDQYRTKGVTYCPHC------  348 (521)
T ss_dssp             HHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTTTTTEECCTTC------
T ss_pred             HHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC-CCCCChhhhcCceEEEeecC------
Confidence            667789999999999999753     346788888889999999999988764 4455532   2334433211      


Q ss_pred             HHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCC
Q 021871          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGS  279 (306)
Q Consensus       201 ~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~  279 (306)
                      ......+++|+|||+|.+|+|+|..|+..+.+|+++.+.+.+..   +    ..+.+.+++ .||++++++.|+++.. +
T Consensus       349 ~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~~~~v~~i~~-~  420 (521)
T 1hyu_A          349 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIILNAQTTEVKG-D  420 (521)
T ss_dssp             CGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEECSEEEEEEEE-C
T ss_pred             chhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEeCCEEEEEEc-C
Confidence            12234689999999999999999999999999999999987764   2    235566766 6999999999999986 4


Q ss_pred             CCcEEEEEeCC---CC--EEecCEEEEecCC
Q 021871          280 DGRVAAVKLED---GS--TIDADTVILLPYD  305 (306)
Q Consensus       280 ~~~v~~v~~~~---G~--~i~~d~vv~a~g~  305 (306)
                      ++++.++.+.+   |+  .+++|.||+|+|.
T Consensus       421 ~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  451 (521)
T 1hyu_A          421 GSKVVGLEYRDRVSGDIHSVALAGIFVQIGL  451 (521)
T ss_dssp             SSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             CCcEEEEEEEeCCCCceEEEEcCEEEECcCC
Confidence            55665666643   54  6899999999985

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=3e-25  Score=193.33  Aligned_cols=239  Identities=16%  Similarity=0.175  Sum_probs=149.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccC-------CCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG-------SGGE  123 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  123 (306)
                      ++||+|||||++|+++|+.|+++|+   +|+|+|+.+..+-...................++++.....       ....
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~---~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGL---SYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVL   79 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSC---CEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHH
Confidence            4799999999999999999999998   99999998764310000000000000000001111110000       0112


Q ss_pred             cCChhHHhhcCeEEEeCCcEEEEeCCCCE---EEcCCCcEEecCcEEEeeCCCCc-cCCCCCCCC-CCCEEEE-ccHHHH
Q 021871          124 RQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTAS-RFPEKIGGY-LPGVHYI-RDVADA  197 (306)
Q Consensus       124 ~~~~~~~~~~~v~~~~~~~v~~v~~~~~~---v~~~~g~~~~~~~lila~G~~~~-~~~~~~~~~-~~g~~~~-~~~~~~  197 (306)
                      .++...+++.+++++++++|.+++.+...   +.++++ .+.||+||+|+|.... ..|.+++.. ..+.... ..+.+ 
T Consensus        80 ~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~-  157 (357)
T 4a9w_A           80 AYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYST-  157 (357)
T ss_dssp             HHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCC-
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCC-
Confidence            34445566789999999999999886654   777777 8999999999996433 135554422 2222221 11111 


Q ss_pred             HHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Cccccccc-CHHHHHHHHHHHH---------------
Q 021871          198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQRLF-TPSLAQRYEQLYQ---------------  260 (306)
Q Consensus       198 ~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~-~~~~~~~~-~~~~~~~~~~~~~---------------  260 (306)
                          .....+++++|+|+|.+|+|+|..|.+.+ +|+++.+. +.+.+... ...+.+.+.+.+.               
T Consensus       158 ----~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (357)
T 4a9w_A          158 ----PAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGF  232 (357)
T ss_dssp             ----SGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC---------------------
T ss_pred             ----hhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccc
Confidence                12235789999999999999999999998 69999888 45555422 2333333333322               


Q ss_pred             -------------HcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          261 -------------QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       261 -------------~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                                   +.|+ +.....+.+++..      ++.+.+|+++++|.||+|+|..
T Consensus       233 ~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~------~v~~~~g~~i~~D~vi~a~G~~  284 (357)
T 4a9w_A          233 GDIVMVPPVLDARARGV-LAAVPPPARFSPT------GMQWADGTERAFDAVIWCTGFR  284 (357)
T ss_dssp             -CBCCCHHHHHHHHTTC-CCEECCCSEEETT------EEECTTSCEEECSEEEECCCBC
T ss_pred             cCcccChhHHHHHhcCc-eEEecCcceEeCC------eeEECCCCEecCCEEEECCCcC
Confidence                         3444 5556677777742      5888999999999999999963

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.92  E-value=8.8e-25  Score=198.36  Aligned_cols=242  Identities=18%  Similarity=0.255  Sum_probs=159.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccc------cc--------------------cC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------YL--------------------FP  103 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~------~~--------------------~~  103 (306)
                      ..+||+|||||++|+++|.+|++.|+   +|+|+|+.+...+......+|      ++                    +.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g   81 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGK---KVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYG   81 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcC
Confidence            45899999999999999999999998   999999843221111000111      00                    00


Q ss_pred             CCCCCCCCCCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeCCCCc
Q 021871          104 LDKKPARLPGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTAS  175 (306)
Q Consensus       104 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G~~~~  175 (306)
                      ..........+.....      ......+...+++.++++..+ .+..++.....+...+|  ..+.||+||+|||+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~  160 (488)
T 3dgz_A           82 WEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI-KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPR  160 (488)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECC-EEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEEC
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCC
Confidence            0000000011110000      000001222345578888754 55555555455666666  47999999999999887


Q ss_pred             cCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHH
Q 021871          176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY  255 (306)
Q Consensus       176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  255 (306)
                      .++.+|+....       ..+++.+......+++++|||+|.+|+|+|..+.+.+.+|+++.+.. +++. +++.+.+.+
T Consensus       161 ~p~~i~G~~~~-------~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~l~~-~d~~~~~~l  231 (488)
T 3dgz_A          161 YPTQVKGALEY-------GITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-PLRG-FDQQMSSLV  231 (488)
T ss_dssp             CCSSCBTHHHH-------CBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SSTT-SCHHHHHHH
T ss_pred             CCCCCCCcccc-------cCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-cccc-CCHHHHHHH
Confidence            43324442110       11334444434457899999999999999999999999999999874 4444 689999999


Q ss_pred             HHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC---CC--EEecCEEEEecCC
Q 021871          256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTVILLPYD  305 (306)
Q Consensus       256 ~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---G~--~i~~d~vv~a~g~  305 (306)
                      .+.++++||++++++.|.+++..+++.+ .+.+.+   |+  ++++|.||+|+|.
T Consensus       232 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~  285 (488)
T 3dgz_A          232 TEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGR  285 (488)
T ss_dssp             HHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCE
T ss_pred             HHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccC
Confidence            9999999999999999999986445543 354443   54  4789999999985

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.92  E-value=1.4e-24  Score=194.40  Aligned_cols=234  Identities=18%  Similarity=0.175  Sum_probs=163.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH---cCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCCh
Q 021871           51 NREFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~---~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (306)
                      ++||+|||||++|+++|.+|++   .++   +|+|+|+++.+.|.. .... ..... .      ..     ......+.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~---~Vtlie~~~~~~~~~-~~~~-~~~g~-~------~~-----~~~~~~l~   66 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVP-SNPW-VGVGW-K------ER-----DDIAFPIR   66 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGS---EEEEECSSSEEECGG-GHHH-HHHTS-S------CH-----HHHEEECH
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcC---EEEEEeCCCCCcccC-Cccc-cccCc-c------CH-----HHHHHHHH
Confidence            5799999999999999999999   676   999999998754431 1100 00000 0      00     01124567


Q ss_pred             hHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCC--CCEEEEccHHHHHHHHHhhh
Q 021871          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL--PGVHYIRDVADADALISSLE  205 (306)
Q Consensus       128 ~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~  205 (306)
                      ..+++.+++++. .+|..++.+.+.+.++++..+.||+||+|+|+.+.. +.+|+...  .....+....+...+.+.+.
T Consensus        67 ~~~~~~gv~~~~-~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~-~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~  144 (437)
T 3sx6_A           67 HYVERKGIHFIA-QSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAF-ENVPGSDPHEGPVQSICTVDHAERAFAEYQ  144 (437)
T ss_dssp             HHHHTTTCEEEC-SCEEEEETTTTEEEETTSCEEECSEEEECCCCEECG-GGSTTCSTTTSSEECCSSHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEE-eEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCc-ccCCCCCcccCcceecccccHHHHHHHHHH
Confidence            778889999974 599999999889999999889999999999998774 55565432  23334445555555443322


Q ss_pred             ---cCCeEEEEcCCHHH------HHHH----HHHHhCCCc-----EEEEecCCccccccc--CHHHHHHHHHHHHHcCCE
Q 021871          206 ---KAKKVVVVGGGYIG------MEVA----AAAVGWKLD-----TTIIFPENHLLQRLF--TPSLAQRYEQLYQQNGVK  265 (306)
Q Consensus       206 ---~~~~v~viG~g~~a------~e~a----~~l~~~~~~-----v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gv~  265 (306)
                         .+.+++|||+|+.+      +|+|    ..+.+.+.+     |+++.+.+.+.....  .+.....+.+.++++||+
T Consensus       145 ~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~  224 (437)
T 3sx6_A          145 ALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE  224 (437)
T ss_dssp             HHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCE
T ss_pred             HHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCE
Confidence               25567899986653      7777    455566654     999999987633111  234778889999999999


Q ss_pred             EEcCceEEEEEeCCCCcEEEEEeCC-----CCEEecCEEEEecCC
Q 021871          266 FVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTVILLPYD  305 (306)
Q Consensus       266 i~~~~~v~~i~~~~~~~v~~v~~~~-----G~~i~~d~vv~a~g~  305 (306)
                      +++++.|++|+.  ++........+     |+++++|.+++|+|+
T Consensus       225 ~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          225 AYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             EECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred             EEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCC
Confidence            999999999983  43322222233     457999999999874

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.92  E-value=2.9e-24  Score=193.39  Aligned_cols=233  Identities=17%  Similarity=0.258  Sum_probs=159.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--C-CCCccccc-c---------c--------cCCCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--Y-ERPALTKG-Y---------L--------FPLDKKPA  109 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~-~~~~~~~~-~---------~--------~~~~~~~~  109 (306)
                      ++||+|||||++|+++|.+|++.|+   +|+|+|++. .+  + .....+.. +         +        +.......
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~---~V~lie~~~-~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~   80 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGI---PTVLVEGQA-LGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASP   80 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---EEEEEccCC-CCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCC
Confidence            4899999999999999999999998   999999943 21  0 00000000 0         0        00000000


Q ss_pred             CCCCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCC
Q 021871          110 RLPGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG  183 (306)
Q Consensus       110 ~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~  183 (306)
                       ...+..+..      .........++++.+++++.+..+. ++  .+.+.+++ ..+.||+||+|||+.+..+|.++. 
T Consensus        81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~~--~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~-  154 (458)
T 1lvl_A           81 -RLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD--GKQVEVDG-QRIQCEHLLLATGSSSVELPMLPL-  154 (458)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE--TTEEEETT-EEEECSEEEECCCEEECCBTTBCC-
T ss_pred             -ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-cc--CCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCc-
Confidence             000100000      0000012245667899998875443 44  45677765 679999999999998875442331 


Q ss_pred             CCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcC
Q 021871          184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  263 (306)
Q Consensus       184 ~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  263 (306)
                      + ..+      .+.....+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.++++|
T Consensus       155 ~-~~v------~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~g  226 (458)
T 1lvl_A          155 G-GPV------ISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLG  226 (458)
T ss_dssp             B-TTE------ECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHT
T ss_pred             c-CcE------ecHHHHhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHCC
Confidence            1 122      133333332335789999999999999999999999999999999999884 78999999999999999


Q ss_pred             CEEEcCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCC
Q 021871          264 VKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILLPYD  305 (306)
Q Consensus       264 v~i~~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~  305 (306)
                      |+++++++|++++.  ++ + .+...+|  +++++|.||+|+|.
T Consensus       227 v~i~~~~~v~~i~~--~~-v-~v~~~~G~~~~i~~D~vv~a~G~  266 (458)
T 1lvl_A          227 IALHLGHSVEGYEN--GC-L-LANDGKGGQLRLEADRVLVAVGR  266 (458)
T ss_dssp             CEEETTCEEEEEET--TE-E-EEECSSSCCCEECCSCEEECCCE
T ss_pred             CEEEECCEEEEEEe--CC-E-EEEECCCceEEEECCEEEECcCC
Confidence            99999999999984  33 3 4554456  58999999999985

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.92  E-value=1.6e-25  Score=203.82  Aligned_cols=239  Identities=19%  Similarity=0.225  Sum_probs=161.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcc------ccccccC--------------CCCCCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL------TKGYLFP--------------LDKKPARL  111 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~------~~~~~~~--------------~~~~~~~~  111 (306)
                      |||+|||||++|+++|.+++++|.   +|.|||+...........      +.||+-+              .......+
T Consensus        43 YDviVIG~GpaG~~aA~~aa~~G~---kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi  119 (542)
T 4b1b_A           43 YDYVVIGGGPGGMASAKEAAAHGA---RVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGW  119 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC---CEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCc
Confidence            799999999999999999999998   999999865432211111      1111100              00000000


Q ss_pred             --C----CcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcC----CCcEEecCcEEEeeCCCCc
Q 021871          112 --P----GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN----SGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       112 --~----~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~----~g~~~~~~~lila~G~~~~  175 (306)
                        .    .+..+..      ..........+++.+++++.+ ...-++...-.+...    +++.++++++|+|||+.|.
T Consensus       120 ~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G-~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~  198 (542)
T 4b1b_A          120 KFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYING-LAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPH  198 (542)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECE-EEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEEC
T ss_pred             ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEee-eEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCC
Confidence              0    0000000      000011222355678887754 333333332233322    3347999999999999998


Q ss_pred             cCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHH
Q 021871          176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY  255 (306)
Q Consensus       176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  255 (306)
                      .+|.++.. .+      ...+++.+++....|++++|||+|++|+|+|..++..|.+||++.+. .+++. +++++...+
T Consensus       199 ~P~~~~~~-~~------~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~-~~L~~-~D~ei~~~l  269 (542)
T 4b1b_A          199 IPDDVEGA-KE------LSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS-IVLRG-FDQQCAVKV  269 (542)
T ss_dssp             CCSSSBTH-HH------HCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS-CSSTT-SCHHHHHHH
T ss_pred             CCCcccCC-Cc------cccCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccc-ccccc-cchhHHHHH
Confidence            54432211 00      02356666665667899999999999999999999999999999875 55665 799999999


Q ss_pred             HHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       256 ~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .+.++++||++++++.+.+++.. ++.+ .|.+.+++.+.+|.|++|+|.
T Consensus       270 ~~~l~~~gi~~~~~~~v~~~~~~-~~~~-~v~~~~~~~~~~D~vLvAvGR  317 (542)
T 4b1b_A          270 KLYMEEQGVMFKNGILPKKLTKM-DDKI-LVEFSDKTSELYDTVLYAIGR  317 (542)
T ss_dssp             HHHHHHTTCEEEETCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECSCE
T ss_pred             HHHHHhhcceeecceEEEEEEec-CCeE-EEEEcCCCeEEEEEEEEcccc
Confidence            99999999999999999999963 4444 588888889999999999985

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.92  E-value=2e-25  Score=210.26  Aligned_cols=245  Identities=18%  Similarity=0.168  Sum_probs=167.7

Q ss_pred             ccCCccCcccccccccee---eecccCCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc
Q 021871           25 HRIRHSSAKNFQRRGFVV---AYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL  101 (306)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~  101 (306)
                      ....|..||...++....   ........++||+|||||++||++|+.|+++|+   +|+|+|+++..+..        +
T Consensus       362 ~~~~C~vnp~~g~e~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~La~~G~---~V~liE~~~~~GG~--------~  430 (690)
T 3k30_A          362 SPIRCTQNPSMGEEWRRGWHPERIRAKESDARVLVVGAGPSGLEAARALGVRGY---DVVLAEAGRDLGGR--------V  430 (690)
T ss_dssp             SCCCCSSCTTTTTTTTTCCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSCTH--------H
T ss_pred             CcccCCcCcccCcccccccCccccCcccccceEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCCCE--------e
Confidence            356799999987775421   112223456899999999999999999999998   99999998754311        1


Q ss_pred             cCCCCCCCCCCCcccccCCCCCcCChhHHhhc-CeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCcc----
Q 021871          102 FPLDKKPARLPGFHTCVGSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR----  176 (306)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~----  176 (306)
                      ...    ..+|++...  .....++...+.+. ++++++++.+.          ..++..+.||+||+|+|+.+..    
T Consensus       431 ~~~----~~~p~~~~~--~~~~~~~~~~~~~~~gv~~~~~~~v~----------~~~~~~~~~d~lvlAtG~~~~~~~~~  494 (690)
T 3k30_A          431 TQE----SALPGLSAW--GRVKEYREAVLAELPNVEIYRESPMT----------GDDIVEFGFEHVITATGATWRTDGVA  494 (690)
T ss_dssp             HHH----HTSTTCGGG--GHHHHHHHHHHHTCTTEEEESSCCCC----------HHHHHHTTCCEEEECCCEEECSSCCS
T ss_pred             eec----cCCCchhHH--HHHHHHHHHHHHHcCCCEEEECCeec----------HHHHhhcCCCEEEEcCCCcccccccc
Confidence            000    001111100  00012344455565 88888775542          1223457899999999988541    


Q ss_pred             ---CCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEc--CCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHH
Q 021871          177 ---FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG--GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL  251 (306)
Q Consensus       177 ---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG--~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~  251 (306)
                         .|++++.+.+.+..     ..+.+......+++++|||  +|.+|+|+|..|.+.+.+|+++.+.+.+.+...++..
T Consensus       495 ~~~~~~i~G~~~~~v~~-----~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~  569 (690)
T 3k30_A          495 RFHTTALPIAEGMQVLG-----PDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFE  569 (690)
T ss_dssp             SSCSSCCCBCTTSEEEC-----HHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTC
T ss_pred             ccCCCCCCCCCCCcEEc-----HHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchh
Confidence               34445543333221     1222222344577899999  9999999999999999999999999988776444566


Q ss_pred             HHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEE---eCCCCEEecCEEEEecCC
Q 021871          252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGSTIDADTVILLPYD  305 (306)
Q Consensus       252 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~---~~~G~~i~~d~vv~a~g~  305 (306)
                      ...+.+.++++||+++++++|++++.  ++.  .+.   +.+++++++|.||+|+|.
T Consensus       570 ~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~--~v~~~~~~~~~~i~aD~VV~A~G~  622 (690)
T 3k30_A          570 VNRIQRRLIENGVARVTDHAVVAVGA--GGV--TVRDTYASIERELECDAVVMVTAR  622 (690)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEET--TEE--EEEETTTCCEEEEECSEEEEESCE
T ss_pred             HHHHHHHHHHCCCEEEcCcEEEEEEC--CeE--EEEEccCCeEEEEECCEEEECCCC
Confidence            77888999999999999999999984  332  233   234567999999999985

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.92  E-value=3e-24  Score=193.42  Aligned_cols=225  Identities=17%  Similarity=0.205  Sum_probs=148.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHH---cCCCCCc---EEEeccCCCCC--CCCCcccc----c-----cccCC-----CCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVE---HGMADGR---LCIVSKEAYAP--YERPALTK----G-----YLFPL-----DKKPA  109 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~---~g~~~~~---V~vie~~~~~~--~~~~~~~~----~-----~~~~~-----~~~~~  109 (306)
                      +||+|||||++||++|+.|++   .|+   +   |+|+|+.+..+  +......+    +     .++..     .....
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~---~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~   79 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGA---EIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECL   79 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTC---CCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCC---CCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhc
Confidence            699999999999999999999   898   6   99999986543  11100000    0     00000     00000


Q ss_pred             CCCCcccc-----------cCCCCCcCChhHHhhcCeE--EEeCCcEEEEeCCCC----EEEcCC---C--cEEecCcEE
Q 021871          110 RLPGFHTC-----------VGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ----TLITNS---G--KLLKYGSLI  167 (306)
Q Consensus       110 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~--~~~~~~v~~v~~~~~----~v~~~~---g--~~~~~~~li  167 (306)
                      .++.+...           .......++..++++.++.  ++++++|..++....    .|.+.+   +  ..+.||+||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VV  159 (464)
T 2xve_A           80 EFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVV  159 (464)
T ss_dssp             CBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred             ccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEE
Confidence            01111000           0001112334445667877  888999999986543    666644   3  478999999


Q ss_pred             EeeC--CCCccCCCCCCCC-CCCE-EEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc
Q 021871          168 VATG--CTASRFPEKIGGY-LPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (306)
Q Consensus       168 la~G--~~~~~~~~~~~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~  243 (306)
                      +|+|  +.|+ .|.++|.+ .++. .+..++.+.     ....+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.++
T Consensus       160 vAtG~~s~p~-~p~ipG~~~~~g~~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~  233 (464)
T 2xve_A          160 CCTGHFSTPY-VPEFEGFEKFGGRILHAHDFRDA-----LEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM  233 (464)
T ss_dssp             ECCCSSSSBC-CCCCBTTTTCCSEEEEGGGCCCG-----GGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC
T ss_pred             ECCCCCCCCc-cCCCCCcccCCceEEehhhhCCH-----hHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC
Confidence            9999  5665 45666643 3442 222222211     12358999999999999999999999999999999988776


Q ss_pred             ccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          244 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      +..+             ..||+++  ..|++++.  +    +|.+.+|+++++|.||+|||..
T Consensus       234 ~~~~-------------~~~V~~~--~~V~~i~~--~----~V~~~dG~~i~~D~Vi~atG~~  275 (464)
T 2xve_A          234 GYKW-------------PENWDER--PNLVRVDT--E----NAYFADGSSEKVDAIILCTGYI  275 (464)
T ss_dssp             CCCC-------------CTTEEEC--SCEEEECS--S----EEEETTSCEEECSEEEECCCBC
T ss_pred             CCCC-------------CCceEEc--CCeEEEeC--C----EEEECCCCEEeCCEEEECCCCC
Confidence            5422             2588887  67888873  2    4778899999999999999963

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.92  E-value=1.6e-24  Score=203.72  Aligned_cols=250  Identities=17%  Similarity=0.172  Sum_probs=168.6

Q ss_pred             cccccccCCC-CCccCCccCccccccccceeeecccCCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC
Q 021871           13 GLSLWCPQSP-SLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (306)
Q Consensus        13 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (306)
                      .|+..|.... ......|..||...++.....  .+...++||+|||||++|+++|..|+++|+   +|+|+|+++..+.
T Consensus       336 ~c~~~C~~~~~~~~~~~C~~np~~~~e~~~~~--~~~~~~~~vvIIGgG~AGl~aA~~l~~~g~---~V~lie~~~~~gg  410 (671)
T 1ps9_A          336 GCNQACLDQIFVGKVTSCLVNPRACHETKMPI--LPAVQKKNLAVVGAGPAGLAFAINAAARGH---QVTLFDAHSEIGG  410 (671)
T ss_dssp             CCCTTTHHHHHTTCCCCCSSCTTTTCTTTSCC--CSCSSCCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSCT
T ss_pred             ccccccchhccCCCceEEEeCcccccccccCC--CCCCCCCeEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCC
Confidence            4555554322 233556999998777654332  123456899999999999999999999998   9999999876532


Q ss_pred             CCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEE-ecCcEEEee
Q 021871           92 ERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLL-KYGSLIVAT  170 (306)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~-~~~~lila~  170 (306)
                      ... . ... .+      ....+...     ..++...+++.++++++++.+..   .          .+ .||+||+||
T Consensus       411 ~~~-~-~~~-~~------~~~~~~~~-----~~~~~~~~~~~gv~~~~~~~v~~---~----------~~~~~d~lviAt  463 (671)
T 1ps9_A          411 QFN-I-AKQ-IP------GKEEFYET-----LRYYRRMIEVTGVTLKLNHTVTA---D----------QLQAFDETILAS  463 (671)
T ss_dssp             THH-H-HTT-ST------TCTTHHHH-----HHHHHHHHHHHTCEEEESCCCCS---S----------SSCCSSEEEECC
T ss_pred             eee-c-ccc-CC------CHHHHHHH-----HHHHHHHHHHcCCEEEeCcEecH---H----------HhhcCCEEEEcc
Confidence            210 0 000 00      00011110     12344556778999988876531   1          24 899999999


Q ss_pred             CCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCC-------------------
Q 021871          171 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-------------------  231 (306)
Q Consensus       171 G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~-------------------  231 (306)
                      |+.+.. |++++.+.+++...     .+.+......+++|+|||+|.+|+|+|..|++.+.                   
T Consensus       464 G~~p~~-~~i~G~~~~~v~~~-----~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~  537 (671)
T 1ps9_A          464 GIVPRT-PPIDGIDHPKVLSY-----LDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSL  537 (671)
T ss_dssp             CEEECC-CCCBTTTSTTEEEH-----HHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTC
T ss_pred             CCCcCC-CCCCCCCCCcEeeH-----HHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccc
Confidence            998874 55666554555432     12222223457899999999999999999987663                   


Q ss_pred             ------------------cEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC--
Q 021871          232 ------------------DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--  291 (306)
Q Consensus       232 ------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G--  291 (306)
                                        +|+++.+.+..+...+++.....+.+.++++||+++++++|++++  +++.  .++ .+|  
T Consensus       538 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~--~~~v--~~~-~~G~~  612 (671)
T 1ps9_A          538 QQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGL--HVV-INGET  612 (671)
T ss_dssp             CSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEE--EEE-ETTEE
T ss_pred             cccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEe--CCeE--EEe-cCCeE
Confidence                              456666666555444566666777888999999999999999998  3432  233 567  


Q ss_pred             CEEecCEEEEecCC
Q 021871          292 STIDADTVILLPYD  305 (306)
Q Consensus       292 ~~i~~d~vv~a~g~  305 (306)
                      +++++|.||+|+|.
T Consensus       613 ~~i~~D~Vi~a~G~  626 (671)
T 1ps9_A          613 QVLAVDNVVICAGQ  626 (671)
T ss_dssp             EEECCSEEEECCCE
T ss_pred             EEEeCCEEEECCCc
Confidence            57999999999985

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.92  E-value=1.6e-24  Score=193.49  Aligned_cols=231  Identities=21%  Similarity=0.237  Sum_probs=155.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHh
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (306)
                      ++|||||||+||+++|++|++.+ ++.+|+|||+++.+.|. +.++. ..... ....           +....+...++
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~-~~~~VtlI~~~~~~~~~-p~l~~-v~~g~-~~~~-----------~i~~~~~~~~~   67 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLM-PDLKITLISDRPYFGFT-PAFPH-LAMGW-RKFE-----------DISVPLAPLLP   67 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHC-TTCEEEEECSSSEEECG-GGHHH-HHHTC-SCGG-----------GSEEESTTTGG
T ss_pred             CcEEEECCCHHHHHHHHHHhccC-cCCeEEEEcCCCCCccC-ccHHH-HhcCC-CCHH-----------HhhhcHHHHHH
Confidence            68999999999999999999987 46799999999876553 22211 00000 0000           11234556677


Q ss_pred             hcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhh---hcCC
Q 021871          132 EKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---EKAK  208 (306)
Q Consensus       132 ~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~  208 (306)
                      +.+++++.+ +|+++|++.++|.+++|+.+.||+||+|||+.+. + .+++.. +....++.+.+...+.+.+   ....
T Consensus        68 ~~gv~~i~~-~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~-~i~G~~-e~~~~~~~~~~a~~~~~~l~~~~~~~  143 (430)
T 3hyw_A           68 KFNIEFINE-KAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-F-GAEGQE-ENSTSICTAEHALETQKKLQELYANP  143 (430)
T ss_dssp             GGTEEEECS-CEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-C-CSBTHH-HHSCCCSSHHHHHHHHHHHHHHHHSC
T ss_pred             HCCcEEEEe-EEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-C-CccCcc-cCcCCcccHHHHHHHHHHHHhhccCC
Confidence            889999865 8999999999999999999999999999998754 2 233311 1223344455555544433   2344


Q ss_pred             eEEEEcCCH------HHHHHHH----HHHhCC----CcEEEEecCCcccc--cccCHHHHHHHHHHHHHcCCEEEcCceE
Q 021871          209 KVVVVGGGY------IGMEVAA----AAVGWK----LDTTIIFPENHLLQ--RLFTPSLAQRYEQLYQQNGVKFVKGASI  272 (306)
Q Consensus       209 ~v~viG~g~------~a~e~a~----~l~~~~----~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gv~i~~~~~v  272 (306)
                      .++|+|++.      .+.|++.    .+.+.+    .+++++...+.+..  ....+...+.+.+.++++||++++++.|
T Consensus       144 ~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v  223 (430)
T 3hyw_A          144 GPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAV  223 (430)
T ss_dssp             CCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEE
T ss_pred             ceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceE
Confidence            555666542      2334443    344443    46788877765532  1134566778889999999999999999


Q ss_pred             EEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCC
Q 021871          273 KNLEAGSDGRVAAVKLEDG--STIDADTVILLPYD  305 (306)
Q Consensus       273 ~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~  305 (306)
                      ++++.  ++.  .++..+|  +++++|.+||++|+
T Consensus       224 ~~v~~--~~~--~~~~~~g~~~~i~~d~vi~~~G~  254 (430)
T 3hyw_A          224 KAIEP--DKV--IYEDLNGNTHEVPAKFTMFMPSF  254 (430)
T ss_dssp             EEECS--SEE--EEECTTSCEEEEECSEEEEECEE
T ss_pred             EEEeC--Cce--EEEeeCCCceEeecceEEEeccC
Confidence            99983  433  2444444  47999999999985

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.92  E-value=7.8e-26  Score=205.29  Aligned_cols=235  Identities=17%  Similarity=0.184  Sum_probs=154.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC-----C---CCCCCCCCCc--c----c
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP-----L---DKKPARLPGF--H----T  116 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~--~----~  116 (306)
                      .+||+|||||++|+++|++|++.|+   +|+|+|++..-+   ...+.|++..     .   ......++.|  .    .
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~---~V~liE~~~~GG---tc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   81 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTD---KVVLIEGGAYGT---TCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRIS   81 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCS---CEEEEESSCSSC---HHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCCCC---cccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCc
Confidence            4799999999999999999999998   999999975211   0000000000     0   0000000000  0    0


Q ss_pred             ccCCCCCcCChhH-----------Hhhc-CeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC
Q 021871          117 CVGSGGERQTPEW-----------YKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY  184 (306)
Q Consensus       117 ~~~~~~~~~~~~~-----------~~~~-~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~  184 (306)
                      ........++...           +... ++++..+ ...-.  +.+.+.+.++..+.||++|+|||+.+.. |++++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g-~a~~~--~~~~v~~~~~~~~~~d~lViATGs~p~~-p~~~~~~  157 (492)
T 3ic9_A           82 VNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRG-FAKFL--DEHTLQVDDHSQVIAKRIVIATGSRPNY-PEFLAAA  157 (492)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEES-CEEEE--ETTEEEETTTEEEEEEEEEECCCEECCC-CHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEE-EEEEe--cCCEEEEcCCcEEEeCEEEEccCCCCcC-CCCCCcc
Confidence            0000000011111           1111 2223322 22112  3457777778899999999999998874 4433322


Q ss_pred             CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCC
Q 021871          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  264 (306)
Q Consensus       185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  264 (306)
                      .+.+      .+++.+......+++++|||+|.+|+|+|..+.+.+.+|+++.+.+++++. +++.+.+.+.+.++++ |
T Consensus       158 ~~~v------~t~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~-V  229 (492)
T 3ic9_A          158 GSRL------LTNDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-QDEEMKRYAEKTFNEE-F  229 (492)
T ss_dssp             GGGE------ECHHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-CCHHHHHHHHHHHHTT-S
T ss_pred             CCcE------EcHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-CCHHHHHHHHHHHhhC-c
Confidence            2222      234444444446899999999999999999999999999999999998875 7899999999999988 9


Q ss_pred             EEEcCceEEEEEeCCCCcEEEEEeC--CC--CEEecCEEEEecCC
Q 021871          265 KFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTVILLPYD  305 (306)
Q Consensus       265 ~i~~~~~v~~i~~~~~~~v~~v~~~--~G--~~i~~d~vv~a~g~  305 (306)
                      ++++++.|++++.+ ++.+ .+.+.  +|  +++++|.||+|+|.
T Consensus       230 ~i~~~~~v~~i~~~-~~~v-~v~~~~~~G~~~~i~~D~Vi~a~G~  272 (492)
T 3ic9_A          230 YFDAKARVISTIEK-EDAV-EVIYFDKSGQKTTESFQYVLAATGR  272 (492)
T ss_dssp             EEETTCEEEEEEEC-SSSE-EEEEECTTCCEEEEEESEEEECSCC
T ss_pred             EEEECCEEEEEEEc-CCEE-EEEEEeCCCceEEEECCEEEEeeCC
Confidence            99999999999974 4444 35553  67  57999999999996

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.91  E-value=2.1e-23  Score=193.86  Aligned_cols=243  Identities=19%  Similarity=0.254  Sum_probs=153.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccc------cc--------------------c
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------YL--------------------F  102 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~------~~--------------------~  102 (306)
                      ...+||+|||||+|||++|.+|+++|+   +|+|+|+............+|      ++                    +
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~---~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~  181 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGA---KTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHF  181 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCC---eEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhC
Confidence            346899999999999999999999998   999999742211000000111      00                    0


Q ss_pred             CCCCCCC-CCCCcccccCC------CCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeCCC
Q 021871          103 PLDKKPA-RLPGFHTCVGS------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCT  173 (306)
Q Consensus       103 ~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G~~  173 (306)
                      ....... ....+..+...      .........+...+++++.+ ....++.....+...+|  ..+.||+||+|||+.
T Consensus       182 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~  260 (598)
T 2x8g_A          182 GWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLISPHEVQITDKNQKVSTITGNKIILATGER  260 (598)
T ss_dssp             TCCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEEECCCEE
T ss_pred             CccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCC
Confidence            0000000 00000000000      00000111234567887754 45555554444555556  468999999999998


Q ss_pred             CccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHH
Q 021871          174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ  253 (306)
Q Consensus       174 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~  253 (306)
                      +.. |+     ++|...+  ..+.+.+.+....+++++|||+|.+|+|+|..+++.+.+|+++.+. .+++. +++.+.+
T Consensus       261 p~~-p~-----i~G~~~~--~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~~~  330 (598)
T 2x8g_A          261 PKY-PE-----IPGAVEY--GITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRG-FDQQMAE  330 (598)
T ss_dssp             ECC-CS-----STTHHHH--CEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHHHH
T ss_pred             CCC-CC-----CCCcccc--eEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCc-CCHHHHH
Confidence            774 44     3442100  0123333332345789999999999999999999999999999998 55554 6889999


Q ss_pred             HHHHHHHHcCCEEEcCceEEEEEeC------C--CCcE-EEEEeCCCCEEe--cCEEEEecCC
Q 021871          254 RYEQLYQQNGVKFVKGASIKNLEAG------S--DGRV-AAVKLEDGSTID--ADTVILLPYD  305 (306)
Q Consensus       254 ~~~~~~~~~gv~i~~~~~v~~i~~~------~--~~~v-~~v~~~~G~~i~--~d~vv~a~g~  305 (306)
                      .+.+.+++.||++++++.+.+++..      +  ++.+ ..+...+|+.++  +|.||+|+|.
T Consensus       331 ~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~  393 (598)
T 2x8g_A          331 KVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGR  393 (598)
T ss_dssp             HHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCE
T ss_pred             HHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCC
Confidence            9999999999999999988888531      1  1333 233456787665  9999999985

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.90  E-value=1.1e-23  Score=188.62  Aligned_cols=223  Identities=19%  Similarity=0.182  Sum_probs=149.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ...+||+|||||++||++|++|++.|+   +|+|+|+.+..+        |.+.. .-+...++  ..     .......
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~---~V~v~e~~~~~G--------G~l~~-gip~~~~~--~~-----~~~~~~~  180 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGY---EVHVYDRYDRMG--------GLLVY-GIPGFKLE--KS-----VVERRVK  180 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTC---CEEEECSSSSCS--------THHHH-TSCTTTSC--HH-----HHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCC--------Ceeee-cCCCccCC--HH-----HHHHHHH
Confidence            356899999999999999999999998   999999986542        11110 00001111  00     1123456


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHH--H----
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI--S----  202 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~----  202 (306)
                      ++++.++++++++.+.      ..+.++++ .+.||+|++|+|+.....+.+++.+.+++....++.......  .    
T Consensus       181 ~l~~~gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~  253 (456)
T 2vdc_G          181 LLADAGVIYHPNFEVG------RDASLPEL-RRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVE  253 (456)
T ss_dssp             HHHHTTCEEETTCCBT------TTBCHHHH-HSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCS
T ss_pred             HHHHCCcEEEeCCEec------cEEEhhHh-HhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccc
Confidence            6778899999886642      12222222 357999999999974435667777777876543333221111  0    


Q ss_pred             ------hhhcCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcc-cccccCHHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          203 ------SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       203 ------~~~~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                            ....+++|+|||+|.+|+|+|..+.+.+. +|++++|.+.. ++.  .+.   . .+.+++.||++++++.+++
T Consensus       254 ~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~--~~~---e-~~~~~~~Gv~~~~~~~~~~  327 (456)
T 2vdc_G          254 AYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPG--SQR---E-VAHAEEEGVEFIWQAAPEG  327 (456)
T ss_dssp             SCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSS--CHH---H-HHHHHHTTCEEECCSSSCC
T ss_pred             cccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCC--CHH---H-HHHHHHCCCEEEeCCCceE
Confidence                  01357899999999999999999999886 59999998875 443  221   1 3457788999999999998


Q ss_pred             EEeCCCCcEEEEEe---------C---------CC--CEEecCEEEEecCC
Q 021871          275 LEAGSDGRVAAVKL---------E---------DG--STIDADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~~---------~---------~G--~~i~~d~vv~a~g~  305 (306)
                      +..  ++++.+|++         .         +|  .++++|.||+|+|+
T Consensus       328 i~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~  376 (456)
T 2vdc_G          328 FTG--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGF  376 (456)
T ss_dssp             EEE--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EeC--CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCC
Confidence            873  343322222         1         23  36899999999985

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.90  E-value=6.3e-24  Score=190.55  Aligned_cols=229  Identities=17%  Similarity=0.165  Sum_probs=148.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHH-c------CCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVE-H------GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGG  122 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~-~------g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (306)
                      +++||+|||||++|+++|..|++ .      +.   +|+|+|+.+.. +...  ..+. .+      +.+..+.     .
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~---~V~lie~~~~~-gg~~--~~gv-~p------~~~~~~~-----~   63 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDM---AVDMLEMLPTP-WGLV--RSGV-AP------DHPKIKS-----I   63 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCE---EEEEEESSSSC-STHH--HHTS-CT------TCTGGGG-----G
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCC---eEEEEecCCCC-CCcc--cccc-CC------CCCCHHH-----H
Confidence            45799999999999999999999 7      76   99999998653 2110  1111 01      0011111     1


Q ss_pred             CcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHH----
Q 021871          123 ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD----  198 (306)
Q Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~----  198 (306)
                      ..++..++++.+++++.+..+      ...+.++++ .+.||+||+|||+.+...+.+|+.+.+++....++....    
T Consensus        64 ~~~~~~~~~~~~v~~~~~v~v------~~~v~~~~~-~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~  136 (456)
T 1lqt_A           64 SKQFEKTAEDPRFRFFGNVVV------GEHVQPGEL-SERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHP  136 (456)
T ss_dssp             HHHHHHHHTSTTEEEEESCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCG
T ss_pred             HHHHHHHHhcCCCEEEeeEEE------CCEEEECCC-eEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCc
Confidence            234455666788998877543      223444444 479999999999974334567776677766543221100    


Q ss_pred             HHHHhh--hcCCeEEEEcCCHHHHHHHHHHHhC--------------------C-CcEEEEecCCcccccccCH------
Q 021871          199 ALISSL--EKAKKVVVVGGGYIGMEVAAAAVGW--------------------K-LDTTIIFPENHLLQRLFTP------  249 (306)
Q Consensus       199 ~~~~~~--~~~~~v~viG~g~~a~e~a~~l~~~--------------------~-~~v~~~~~~~~~~~~~~~~------  249 (306)
                      .+....  ..+++++|||+|++|+|+|..|++.                    + .+|+++.|.+.+...+.+.      
T Consensus       137 d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~  216 (456)
T 1lqt_A          137 HFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELA  216 (456)
T ss_dssp             GGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGG
T ss_pred             ccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhh
Confidence            000011  1478999999999999999999974                    3 5899999987654321110      


Q ss_pred             ------------H------------------HHHHHHHHHHH------cCCEEEcCceEEEEEeCCCCcEEEEEeC----
Q 021871          250 ------------S------------------LAQRYEQLYQQ------NGVKFVKGASIKNLEAGSDGRVAAVKLE----  289 (306)
Q Consensus       250 ------------~------------------~~~~~~~~~~~------~gv~i~~~~~v~~i~~~~~~~v~~v~~~----  289 (306)
                                  +                  +.+.+.+.+++      +||++++++.+++|..  ++.+.+|++.    
T Consensus       217 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~--~~~v~~v~~~~~~~  294 (456)
T 1lqt_A          217 DLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKG--KRKVERIVLGRNEL  294 (456)
T ss_dssp             GCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEEC--SSSCCEEEEEEEEE
T ss_pred             cCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEec--CCcEeEEEEEEEEe
Confidence                        1                  12344444555      7999999999999984  3444345443    


Q ss_pred             ------------CC--CEEecCEEEEecCC
Q 021871          290 ------------DG--STIDADTVILLPYD  305 (306)
Q Consensus       290 ------------~G--~~i~~d~vv~a~g~  305 (306)
                                  +|  +++++|.||+|+|.
T Consensus       295 ~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~  324 (456)
T 1lqt_A          295 VSDGSGRVAAKDTGEREELPAQLVVRSVGY  324 (456)
T ss_dssp             EECSSSSEEEEEEEEEEEEECSEEEECSCE
T ss_pred             cCCCcccccccCCCceEEEEcCEEEEcccc
Confidence                        34  46999999999985

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.90  E-value=7.3e-24  Score=190.30  Aligned_cols=230  Identities=16%  Similarity=0.173  Sum_probs=151.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      .++||+|||||++|+++|..|++.| ++.+|+|+|+.+.. +.       .+....     .|.+...  ......+..+
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g-~~~~V~vie~~~~~-gg-------~~~~g~-----~p~~~~~--~~~~~~~~~~   68 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHH-SRAHVDIYEKQLVP-FG-------LVRFGV-----APDHPEV--KNVINTFTQT   68 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHC-SSCEEEEECSSSSS-CT-------HHHHTS-----CTTCGGG--GGHHHHHHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcC-CCCCEEEEeCCCcC-Cc-------eeeccc-----CCCCccH--HHHHHHHHHH
Confidence            4579999999999999999999998 23499999998654 21       111000     0111100  0012344566


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHh------
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS------  203 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------  203 (306)
                      +++.+++++.+..+.      ..+.+.+ ..+.||+||+|||+.+...|++|+.+.+++....++.   .+.+.      
T Consensus        69 ~~~~gv~~~~~~~v~------~~V~~~~-~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~---~~~~~~~d~~~  138 (460)
T 1cjc_A           69 ARSDRCAFYGNVEVG------RDVTVQE-LQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFV---GWYNGLPENRE  138 (460)
T ss_dssp             HTSTTEEEEBSCCBT------TTBCHHH-HHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHH---HHHTTCGGGTT
T ss_pred             HHhCCcEEEeeeEEe------eEEEecc-ceEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHH---HHhhcCccccc
Confidence            677899998876551      2233333 2468999999999996445677887777876654331   11110      


Q ss_pred             ---hhcCCeEEEEcCCHHHHHHHHHHH--------------------hCCC-cEEEEecCCccc--------------cc
Q 021871          204 ---LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL-DTTIIFPENHLL--------------QR  245 (306)
Q Consensus       204 ---~~~~~~v~viG~g~~a~e~a~~l~--------------------~~~~-~v~~~~~~~~~~--------------~~  245 (306)
                         ...+++++|||+|++|+|+|..|.                    ..+. +|+++.|.+.+.              +.
T Consensus       139 ~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~  218 (460)
T 1cjc_A          139 LAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPG  218 (460)
T ss_dssp             CCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTT
T ss_pred             cccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCC
Confidence               114789999999999999999999                    4565 799999987642              10


Q ss_pred             --------cc----------CH---HHHHHHHHHHHH--------------cCCEEEcCceEEEEEeCCCC-cEEEEEeC
Q 021871          246 --------LF----------TP---SLAQRYEQLYQQ--------------NGVKFVKGASIKNLEAGSDG-RVAAVKLE  289 (306)
Q Consensus       246 --------~~----------~~---~~~~~~~~~~~~--------------~gv~i~~~~~v~~i~~~~~~-~v~~v~~~  289 (306)
                              .+          +.   .+.+.+.+.+++              +||++++++.+++|..++++ ++.+|++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~  298 (460)
T 1cjc_A          219 TRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLA  298 (460)
T ss_dssp             EEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEE
T ss_pred             ceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEE
Confidence                    00          01   023344445555              89999999999999864335 55555543


Q ss_pred             ---------------CC--CEEecCEEEEecCC
Q 021871          290 ---------------DG--STIDADTVILLPYD  305 (306)
Q Consensus       290 ---------------~G--~~i~~d~vv~a~g~  305 (306)
                                     +|  +.+++|.||+|+|.
T Consensus       299 ~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~  331 (460)
T 1cjc_A          299 VTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  331 (460)
T ss_dssp             EEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             EEEEccccCCCcccCCCceEEEEcCEEEECCCC
Confidence                           34  47999999999985

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.89  E-value=5.7e-23  Score=182.10  Aligned_cols=235  Identities=17%  Similarity=0.166  Sum_probs=157.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++|||||||+||+++|.+|++.+. +.+|+|||+++.+.+. +.... ..... ....      .      .....+.+
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~-~~~Vtlie~~~~~~~~-p~~~~-v~~g~-~~~~------~------~~~~~~~~   65 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNETYYTC-YMSNE-VIGGD-RELA------S------LRVGYDGL   65 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSSEECS-TTHHH-HHHTS-SCGG------G------GEECSHHH
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCc-CCeEEEEeCCCCCCCc-cCHHH-HhcCC-CCHH------H------HhhCHHHH
Confidence            3689999999999999999999874 6799999998765333 21110 11100 0000      0      11223446


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC----CCCEEEEccHHHHHHHHHhhh-
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIRDVADADALISSLE-  205 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~-  205 (306)
                      .+.+++++.+ +|..+|++.+.+.+.++..+.||+||+|+|+.+.. +.+++..    ......++...+...+.+.+. 
T Consensus        66 ~~~gv~~i~~-~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~-~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~  143 (401)
T 3vrd_B           66 RAHGIQVVHD-SALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLY-DKIEGYSEALAAKLPHAWKAGEQTALLRRQLES  143 (401)
T ss_dssp             HHTTCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCEEECG-GGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHH
T ss_pred             HHCCCEEEEe-EEEEEEccCcEEEecccceeecceeeeccCCcccc-CCccCchhhcccCccceeccHHHHHHHHHHHHh
Confidence            6789998865 89999999999999999999999999999998764 4444421    112223333445555444433 


Q ss_pred             --cCCeEEEEcCC------H----HHHHHHHHHHhC--CCcEEEEecCCccccc-ccCHHHHHHHHHHHHHcCCEEEcCc
Q 021871          206 --KAKKVVVVGGG------Y----IGMEVAAAAVGW--KLDTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKGA  270 (306)
Q Consensus       206 --~~~~v~viG~g------~----~a~e~a~~l~~~--~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~  270 (306)
                        .+..+++.++.      .    .+.+++..+...  ..+|+++.+.+.+... .+++.+.+.+.+.++++||++++++
T Consensus       144 ~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~  223 (401)
T 3vrd_B          144 MDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGP  223 (401)
T ss_dssp             SCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTT
T ss_pred             cccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCc
Confidence              23344333221      1    334555555544  3678999888776431 2455566666667788999999999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          271 SIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       271 ~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .+..++.+.+..  .+++++|+++++|.+++++|+
T Consensus       224 ~v~~v~~~~~~~--~v~~~~g~~i~~D~vi~~~g~  256 (401)
T 3vrd_B          224 DAAVVKTDTEAM--TVETSFGETFKAAVINLIPPQ  256 (401)
T ss_dssp             TTCEEEEETTTT--EEEETTSCEEECSEEEECCCE
T ss_pred             eEEEEEecccce--EEEcCCCcEEEeeEEEEecCc
Confidence            999988644443  588999999999999999986

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.89  E-value=1.2e-22  Score=182.48  Aligned_cols=229  Identities=12%  Similarity=0.095  Sum_probs=144.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--CCCCcccc---------------------------c
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPALTK---------------------------G   99 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~~~~---------------------------~   99 (306)
                      ++.+||+|||||++||++|+.|++.|. ..+|+|+|+.+..+  +.......                           .
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~-~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~   82 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS   82 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCC-CCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence            346899999999999999999999985 34799999986542  11111000                           0


Q ss_pred             cccCCCCCC-----CCCCCcccccC-------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCC---Cc---
Q 021871          100 YLFPLDKKP-----ARLPGFHTCVG-------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS---GK---  159 (306)
Q Consensus       100 ~~~~~~~~~-----~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~---g~---  159 (306)
                      .++......     ..++.+.....       .....++..++++.+..++++++|.+++....  .+.+.+   |.   
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred             chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence            000000000     00000000000       00011223334445666788999999976543  566554   55   


Q ss_pred             EEecCcEEEeeCC--CCccCCCCCCCC-----CCC-EEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCC
Q 021871          160 LLKYGSLIVATGC--TASRFPEKIGGY-----LPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL  231 (306)
Q Consensus       160 ~~~~~~lila~G~--~~~~~~~~~~~~-----~~g-~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~  231 (306)
                      .+.||+||+|+|.  .+. .|.+++.+     .++ +.+..++.+.     ....+++|+|||+|.+|+|+|..|++.+.
T Consensus       163 ~~~~d~VVvAtG~~s~p~-~p~i~G~~~~~~~~~g~v~~~~~~~~~-----~~~~~k~VvVvG~G~sg~e~A~~l~~~~~  236 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPY-IPNIKGLDEYAKAVPGSVLHSSLFREP-----ELFVGESVLVVGGASSANDLVRHLTPVAK  236 (447)
T ss_dssp             EEEESEEEECCCSSSSBC-BCCCBTHHHHHHHSTTSEEEGGGCCCG-----GGGTTCCEEEECSSHHHHHHHHHHTTTSC
T ss_pred             EEEeCEEEECCCCCCCCC-CCCCCChhhhhccCCccEEEecccCCh-----hhcCCCEEEEEccCcCHHHHHHHHHHHhC
Confidence            7999999999998  444 35544421     122 3332222221     12258999999999999999999999999


Q ss_pred             c-EEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCE-EecCEEEEecCCC
Q 021871          232 D-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTVILLPYDQ  306 (306)
Q Consensus       232 ~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~-i~~d~vv~a~g~~  306 (306)
                      + |+++.|.+.+                ++..||++  ...|++++. +++   +|.+.+|+. +++|.||+|||..
T Consensus       237 ~~V~l~~r~~~~----------------l~~~~i~~--~~~v~~~~~-~~~---~v~~~dG~~~~~~D~vi~atG~~  291 (447)
T 2gv8_A          237 HPIYQSLLGGGD----------------IQNESLQQ--VPEITKFDP-TTR---EIYLKGGKVLSNIDRVIYCTGYL  291 (447)
T ss_dssp             SSEEEECTTCCS----------------CBCSSEEE--ECCEEEEET-TTT---EEEETTTEEECCCSEEEECCCBC
T ss_pred             CcEEEEeCCCCc----------------CCCCCeEE--ecCeEEEec-CCC---EEEECCCCEeccCCEEEECCCCC
Confidence            9 9999998765                34457764  467888873 222   577889976 6899999999963

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.89  E-value=1.3e-23  Score=198.82  Aligned_cols=256  Identities=15%  Similarity=0.112  Sum_probs=158.1

Q ss_pred             cccccccCC--CCCccCCccCcccccccccee---eecccCCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           13 GLSLWCPQS--PSLHRIRHSSAKNFQRRGFVV---AYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        13 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|+. |...  .......|..||...++....   ....+...++||+|||||++||++|+.|+++|+   +|+|+|+++
T Consensus       347 ~Cn~-C~~~~~~~~~~~~C~~n~~~g~e~~~~~~~~~~~~~~~~~~VvIIGgGpAGl~aA~~L~~~G~---~Vtlie~~~  422 (729)
T 1o94_A          347 GCNV-CISRWEIGGPPMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGY---TVHLTDTAE  422 (729)
T ss_dssp             CCCH-HHHHHHHSSSCCCCSSCTTTTTHHHHCCCTTCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSS
T ss_pred             ccch-hcccccccCCceeeccCccccccccccccccccccccCCceEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            4553 5533  123356699999877654211   111223456899999999999999999999998   999999987


Q ss_pred             CCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhhc------CeEEEeCCcEEEEeCCCCEEEcCCCcEE
Q 021871           88 YAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK------GIEMIYQDPVTSIDIEKQTLITNSGKLL  161 (306)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~v~~v~~~~~~v~~~~g~~~  161 (306)
                      ..+-        .+....    .+|++....  ....++...++..      ++++..+          ..+.++++..+
T Consensus       423 ~~GG--------~~~~~~----~~pg~~~~~--~~~~~~~~~i~~~~~~~~~~v~i~~~----------~~v~~~~~~~~  478 (729)
T 1o94_A          423 KIGG--------HLNQVA----ALPGLGEWS--YHRDYRETQITKLLKKNKESQLALGQ----------KPMTADDVLQY  478 (729)
T ss_dssp             STTT--------THHHHT----TSTTCGGGH--HHHHHHHHHHHHHHHHSTTCEEECSC----------CCCCHHHHHTS
T ss_pred             CcCC--------eeeecc----cCCChHHHH--HHHHHHHHHHHHhhcccCCceEEEeC----------eEEehhhcccc
Confidence            6421        111000    111111100  0001111112221      3343322          22333344468


Q ss_pred             ecCcEEEeeCCCCc-------cCCCCCCCC--CCCEEEEccHHHHHHHHHhhhcCCeEEEEc--CCHHHHHHHHHHHhCC
Q 021871          162 KYGSLIVATGCTAS-------RFPEKIGGY--LPGVHYIRDVADADALISSLEKAKKVVVVG--GGYIGMEVAAAAVGWK  230 (306)
Q Consensus       162 ~~~~lila~G~~~~-------~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~v~viG--~g~~a~e~a~~l~~~~  230 (306)
                      .||+||+|||+.+.       ..|++++.+  .+++...   .  +.+......+++|+|||  +|.+|+|+|..|.+.+
T Consensus       479 ~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~---~--~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G  553 (729)
T 1o94_A          479 GADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTP---E--QVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAG  553 (729)
T ss_dssp             CCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECH---H--HHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEH---H--HHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcC
Confidence            99999999998843       234455543  3444322   1  22222334578999999  9999999999999999


Q ss_pred             CcEEEEecCCccccc-ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-CE---------------
Q 021871          231 LDTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-ST---------------  293 (306)
Q Consensus       231 ~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~---------------  293 (306)
                      .+|+++.+.+ +.+. ..+.. ...+.+.++++||++++++.|++|+.  ++........++ +.               
T Consensus       554 ~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (729)
T 1o94_A          554 HEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTS  629 (729)
T ss_dssp             CEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCC
T ss_pred             CEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccccccCCc
Confidence            9999999998 5542 12222 45677888999999999999999983  332211111233 23               


Q ss_pred             ---EecCEEEEecCC
Q 021871          294 ---IDADTVILLPYD  305 (306)
Q Consensus       294 ---i~~d~vv~a~g~  305 (306)
                         +++|.||+|+|+
T Consensus       630 ~~~i~aD~Vv~a~G~  644 (729)
T 1o94_A          630 HRWIEFDSLVLVTGR  644 (729)
T ss_dssp             CEEEECSEEEEESCE
T ss_pred             ceeeeCCEEEECCCC
Confidence               999999999985

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.88  E-value=1.7e-22  Score=196.16  Aligned_cols=225  Identities=16%  Similarity=0.176  Sum_probs=156.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .+||+|||||++|+++|.+|++.|+   +|+|+|+++..+-        .+...  ....+++...   .+....+...+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~---~V~lie~~~~~GG--------~~~~~--~k~~i~~~~~---~~~~~~~~~~l  191 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGA---RVMLLDERAEAGG--------TLLDT--AGEQIDGMDS---SAWIEQVTSEL  191 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSSG--------GGGGS--SCCEETTEEH---HHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCCCCc--------eeccC--CccccCCCCH---HHHHHHHHHHH
Confidence            4799999999999999999999998   9999999866431        11100  0000111000   00011222334


Q ss_pred             hhc-CeEEEeCCcEEEEeCCCCEEE---------c--------CCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEc
Q 021871          131 KEK-GIEMIYQDPVTSIDIEKQTLI---------T--------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR  192 (306)
Q Consensus       131 ~~~-~v~~~~~~~v~~v~~~~~~v~---------~--------~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~  192 (306)
                      .+. +++++.+++|..++.......         +        .++..+.||+||+|||+.+.. |++++.+.+++....
T Consensus       192 ~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~-~~ipG~~~~gv~~~~  270 (965)
T 2gag_A          192 AEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP-IVFENNDRPGIMLAG  270 (965)
T ss_dssp             HHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC-CCCBTCCSTTEEEHH
T ss_pred             hhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC-CCCCCCCCCCEEEhH
Confidence            443 899998888988876443111         1        011368999999999998774 567877778876543


Q ss_pred             cHHHHHHHHHh--hhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCc
Q 021871          193 DVADADALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA  270 (306)
Q Consensus       193 ~~~~~~~~~~~--~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~  270 (306)
                         +...+.+.  ...+++++|||+|.+|+|+|..|.+.+.+|+++.+.+.+.+.          .+.+++.||++++++
T Consensus       271 ---~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~----------~~~l~~~GV~v~~~~  337 (965)
T 2gag_A          271 ---AVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISAA----------AAQAVADGVQVISGS  337 (965)
T ss_dssp             ---HHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHH----------HHHHHHTTCCEEETE
T ss_pred             ---HHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchh----------HHHHHhCCeEEEeCC
Confidence               22233332  123589999999999999999999999999999998876531          466788999999999


Q ss_pred             eEEEEEeCCCCcEEEEEeCC-------C--CEEecCEEEEecCC
Q 021871          271 SIKNLEAGSDGRVAAVKLED-------G--STIDADTVILLPYD  305 (306)
Q Consensus       271 ~v~~i~~~~~~~v~~v~~~~-------G--~~i~~d~vv~a~g~  305 (306)
                      .|++|+..+++++.+|++.+       |  +++++|.||+|+|.
T Consensus       338 ~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~  381 (965)
T 2gag_A          338 VVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGF  381 (965)
T ss_dssp             EEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCE
T ss_pred             EeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCc
Confidence            99999852255555666653       5  57999999999985

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.88  E-value=1.4e-21  Score=179.39  Aligned_cols=185  Identities=17%  Similarity=0.168  Sum_probs=116.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-------CCCCccc-cccccCCCCCC-----CCCCCccc
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALT-KGYLFPLDKKP-----ARLPGFHT  116 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~~~~~~-~~~~~~~~~~~-----~~~~~~~~  116 (306)
                      ..+||+|||||++|+++|+.|++.|+   +|+|+|+++..+       |...... ....+...-.+     ..++.. .
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~---~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~-~   90 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGR---SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTER-Y   90 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBS-S
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccc-c
Confidence            35799999999999999999999998   999999987643       1110000 00000000000     000000 0


Q ss_pred             ccCCCCCcCChhHHhhcC--eEEEeCCcEEEEeCCC----CEEEcCCCcEEecCcEEEeeCCC--CccCCCCCCCC-CCC
Q 021871          117 CVGSGGERQTPEWYKEKG--IEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCT--ASRFPEKIGGY-LPG  187 (306)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~--v~~~~~~~v~~v~~~~----~~v~~~~g~~~~~~~lila~G~~--~~~~~~~~~~~-~~g  187 (306)
                      ....+...++....++.+  .+++++++|.+++.++    ..+.+++|..++||+||+|+|..  +. .|.++|.+ .+|
T Consensus        91 ~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~-~p~i~G~~~f~G  169 (542)
T 1w4x_A           91 ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQ-LPNFPGLKDFAG  169 (542)
T ss_dssp             CBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCC-CCCCTTGGGCCS
T ss_pred             CCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCCC
Confidence            000001122333344555  4678899999987643    36788888889999999999964  43 45555532 445


Q ss_pred             EEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      .......+..+   .....+++|+|||+|.+|+|++..++..+.+|+++.|.+.+
T Consensus       170 ~~~hs~~~~~~---~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          170 NLYHTGNWPHE---PVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             EEEEGGGCCSS---CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             ceEECCCCCCc---hhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            33322111100   01135899999999999999999999999999999998876

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.87  E-value=6.1e-21  Score=173.28  Aligned_cols=192  Identities=17%  Similarity=0.176  Sum_probs=118.2

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCC-----------CCcEEEeccCCCCCCCCCccccccccC---------CCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMA-----------DGRLCIVSKEAYAPYERPALTKGYLFP---------LDKKP  108 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~-----------~~~V~vie~~~~~~~~~~~~~~~~~~~---------~~~~~  108 (306)
                      ...+||||||+||+||++|..|.+.+.+           ....+.+|+.+.+.|+...+..+.-..         ...+.
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~  116 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPR  116 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTT
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCC
Confidence            4468999999999999999999987542           235788999888776543322221100         00000


Q ss_pred             CCCCCccc------------------ccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCC----------CEEEcCCC--
Q 021871          109 ARLPGFHT------------------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK----------QTLITNSG--  158 (306)
Q Consensus       109 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~----------~~v~~~~g--  158 (306)
                      ..+ .|..                  ....+...|+..+.++++..++++++|+++....          +.|.+.++  
T Consensus       117 s~~-sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~  195 (501)
T 4b63_A          117 SSF-TFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVET  195 (501)
T ss_dssp             CTT-SHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTT
T ss_pred             Ccc-chHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCC
Confidence            000 0000                  0001112234444455666788899999986422          35555433  


Q ss_pred             ---cEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHH-HHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhC--CCc
Q 021871          159 ---KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLD  232 (306)
Q Consensus       159 ---~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~--~~~  232 (306)
                         ..+.+++||+|+|..|. +|..++. .+.+.+-.++.+. +.+......+|+|+|||+|.||+|++..|++.  +.+
T Consensus       196 g~~~~~~ar~vVlatG~~P~-iP~~~~~-~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~  273 (501)
T 4b63_A          196 GEISARRTRKVVIAIGGTAK-MPSGLPQ-DPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSR  273 (501)
T ss_dssp             CCEEEEEEEEEEECCCCEEC-CCTTSCC-CTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCE
T ss_pred             ceEEEEEeCEEEECcCCCCC-CCCCCCC-CcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCce
Confidence               36899999999998766 3443332 2334443333322 22222234689999999999999999999864  678


Q ss_pred             EEEEecCCccc
Q 021871          233 TTIIFPENHLL  243 (306)
Q Consensus       233 v~~~~~~~~~~  243 (306)
                      |+++.|.+.+.
T Consensus       274 v~~~~R~~~~~  284 (501)
T 4b63_A          274 TTLIMRDSAMR  284 (501)
T ss_dssp             EEEECSSSSCC
T ss_pred             EEEEeCCCccc
Confidence            99999987654

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.86  E-value=1.7e-21  Score=190.34  Aligned_cols=226  Identities=19%  Similarity=0.213  Sum_probs=148.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..+||+|||||+|||++|.+|+++|+.  +|+|+|+.+..+.        .+.. ..+...++  ..     .......+
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~--~Vtv~E~~~~~GG--------~~~~-~ip~~~~~--~~-----~~~~~~~~  247 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYS--DITIFEKQEYVGG--------LSTS-EIPQFRLP--YD-----VVNFEIEL  247 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSSCST--------HHHH-TSCTTTSC--HH-----HHHHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCC--cEEEEeCCCCCCc--------cccc-cCCcccCC--HH-----HHHHHHHH
Confidence            357999999999999999999999973  5999999765421        1100 00001111  00     01223456


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCC-CccCCCCCCCC-CCCEEEEccHHHHHHHHHh----
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGY-LPGVHYIRDVADADALISS----  203 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~-~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~----  203 (306)
                      +++.++++++++.+.   .  +.+.++++..+.||+|++|||+. ++.+|..++.. .+++....++.........    
T Consensus       248 ~~~~gv~~~~~~~v~---~--~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~  322 (1025)
T 1gte_A          248 MKDLGVKIICGKSLS---E--NEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMC  322 (1025)
T ss_dssp             HHTTTCEEEESCCBS---T--TSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTB
T ss_pred             HHHCCcEEEcccEec---c--ceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccc
Confidence            778899999887652   1  23444444457899999999984 66544333322 3555543222211110000    


Q ss_pred             ------hhcCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          204 ------LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       204 ------~~~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                            ...+++|+|||+|.+|+|+|..+.+.+. +|++++|.+. .++. .+..+     +.+++.||+++.++.++++
T Consensus       323 ~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~-~~~e~-----~~~~~~Gv~~~~~~~~~~i  396 (1025)
T 1gte_A          323 ACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRA-VPEEV-----ELAKEEKCEFLPFLSPRKV  396 (1025)
T ss_dssp             SCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCS-CHHHH-----HHHHHTTCEEECSEEEEEE
T ss_pred             cccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCC-CHHHH-----HHHHHcCCEEEeCCCceEE
Confidence                  1235699999999999999999999985 8999999873 4443 23222     4577889999999999999


Q ss_pred             EeCCCCcEEEEEeC------CC---------CEEecCEEEEecCC
Q 021871          276 EAGSDGRVAAVKLE------DG---------STIDADTVILLPYD  305 (306)
Q Consensus       276 ~~~~~~~v~~v~~~------~G---------~~i~~d~vv~a~g~  305 (306)
                      .. +++++.+|++.      +|         .++++|.||+|+|+
T Consensus       397 ~~-~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~  440 (1025)
T 1gte_A          397 IV-KGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  440 (1025)
T ss_dssp             EE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             Ec-cCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCC
Confidence            85 46666556542      22         36899999999986

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.85  E-value=3.3e-21  Score=174.83  Aligned_cols=194  Identities=16%  Similarity=0.169  Sum_probs=135.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .+||+|||||++|+++|++|++. +   +|+|+|+++..+........        ....++.  .      ...+...+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~---~V~vie~~~~~GG~~~~~~~--------~~~g~~~--~------~~~~~~~l  167 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-L---TVALIEERGWLGGDMWLKGI--------KQEGFNK--D------SRKVVEEL  167 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-C---CEEEECTTSSSSCSGGGTCS--------EETTTTE--E------HHHHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-C---CEEEEeCCCCCCCeeecccc--------ccCCCCC--C------HHHHHHHH
Confidence            46999999999999999999998 6   99999998765432111000        0000010  0      01111111


Q ss_pred             -h--hcCeEEEeCCcEEEEeCCCCEE--Ec-CCCc--EEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHH
Q 021871          131 -K--EKGIEMIYQDPVTSIDIEKQTL--IT-NSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS  202 (306)
Q Consensus       131 -~--~~~v~~~~~~~v~~v~~~~~~v--~~-~~g~--~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  202 (306)
                       +  +.++++++++++..++.+...+  .. +++.  .+.||++|+|+|+.+.. |++++.+.+++....   +...+.+
T Consensus       168 ~~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~-~~~~g~~~~gv~~~~---~~~~~~~  243 (493)
T 1y56_A          168 VGKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDST-MLFENNDMPGVFRRD---FALEVMN  243 (493)
T ss_dssp             HHTCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECC-CCCTTTTSTTEEEHH---HHHHHHH
T ss_pred             HHHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccC-CCCCCCCCCCEEEcH---HHHHHHH
Confidence             1  4588888888888877665432  22 3443  68999999999998874 567777778876532   3333333


Q ss_pred             h--hhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCC
Q 021871          203 S--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  280 (306)
Q Consensus       203 ~--~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~  280 (306)
                      .  ...+++++|+|+|.++++                                   +.+++.||++++++.|++++.  +
T Consensus       244 ~~~~~~~~~vvViGgG~~gle-----------------------------------~~l~~~GV~v~~~~~v~~i~~--~  286 (493)
T 1y56_A          244 VWEVAPGRKVAVTGSKADEVI-----------------------------------QELERWGIDYVHIPNVKRVEG--N  286 (493)
T ss_dssp             TSCBCSCSEEEEESTTHHHHH-----------------------------------HHHHHHTCEEEECSSEEEEEC--S
T ss_pred             hcccCCCCEEEEECCCHHHHH-----------------------------------HHHHhCCcEEEeCCeeEEEec--C
Confidence            2  224589999999999987                                   456778999999999999984  3


Q ss_pred             CcEEEEEeCCCCEEecCEEEEecCC
Q 021871          281 GRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       281 ~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.+..+.+.+|+++++|.||+|+|.
T Consensus       287 ~~v~~v~~~~g~~i~aD~Vv~a~G~  311 (493)
T 1y56_A          287 EKVERVIDMNNHEYKVDALIFADGR  311 (493)
T ss_dssp             SSCCEEEETTCCEEECSEEEECCCE
T ss_pred             CceEEEEeCCCeEEEeCEEEECCCc
Confidence            4455688888989999999999985

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.42  E-value=1.2e-12  Score=118.91  Aligned_cols=56  Identities=29%  Similarity=0.375  Sum_probs=50.8

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ...+.+.+.+.+++.|++|+++++|++|.. +++++.+|++++|+++.+|.||++++
T Consensus       220 ~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~-~~~~~~gV~~~~g~~~~ad~VV~~a~  275 (501)
T 4dgk_A          220 TGALVQGMIKLFQDLGGEVVLNARVSHMET-TGNKIEAVHLEDGRRFLTQAVASNAD  275 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSCEEECCC
T ss_pred             CcchHHHHHHHHHHhCCceeeecceeEEEe-eCCeEEEEEecCCcEEEcCEEEECCC
Confidence            557888999999999999999999999997 67888899999999999999998764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.41  E-value=8.3e-13  Score=115.03  Aligned_cols=57  Identities=12%  Similarity=0.162  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~--~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++++++|++++.++++.+ .|.+.+|+  ++.+|.||+|+|.
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~a~~VV~A~G~  207 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGF-ELDFGGAEPMTLSCRVLINAAGL  207 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSE-EEEECTTSCEEEEEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceE-EEEECCCceeEEEeCEEEECCCc
Confidence            457888899999999999999999999997545545 58888884  7999999999984

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.32  E-value=3.4e-12  Score=99.84  Aligned_cols=107  Identities=18%  Similarity=0.191  Sum_probs=75.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcc-cccCCCCCcCChhHH
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFH-TCVGSGGERQTPEWY  130 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  130 (306)
                      +||+|||||++|+.+|..|++.|.   +|+++|+.+........            ...+++++ ..........+.+.+
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~---~v~lie~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~   66 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL---KVLVLDGGRSKVKGVSR------------VPNYPGLLDEPSGEELLRRLEAHA   66 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSCCTTTTCSC------------CCCSTTCTTCCCHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCcccCchh------------hhccCCCcCCCCHHHHHHHHHHHH
Confidence            699999999999999999999998   99999998642211100            01112220 000111124455667


Q ss_pred             hhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.+++++.+ +|.+++.++  ..+.++++ .+.+|.+|+|+|..+.
T Consensus        67 ~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~  111 (180)
T 2ywl_A           67 RRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT  111 (180)
T ss_dssp             HHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH
T ss_pred             HHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC
Confidence            7789999999 999987643  36777777 8999999999998874

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.29  E-value=1.7e-10  Score=108.81  Aligned_cols=56  Identities=21%  Similarity=0.217  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC-EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~-~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++++++|+++..+ ++.+ .|++.+|+ ++.+|.||+|+|.
T Consensus       411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~v-~V~t~~G~~~i~Ad~VVlAtG~  467 (689)
T 3pvc_A          411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRI-DSQW-QLTFGQSQAAKHHATVILATGH  467 (689)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEC-SSSE-EEEEC-CCCCEEESEEEECCGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEe-CCeE-EEEeCCCcEEEECCEEEECCCc
Confidence            4678888999999999999999999999974 4445 68888887 8999999999984

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.26  E-value=7e-13  Score=116.92  Aligned_cols=122  Identities=16%  Similarity=0.156  Sum_probs=73.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC-------CCCcccc-ccc----cCCCCCCC--------
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK-GYL----FPLDKKPA--------  109 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-------~~~~~~~-~~~----~~~~~~~~--------  109 (306)
                      +.+||+|||||++|+++|+.|+++|.   +|+|+|+.+..+.       ..+.+.+ +..    +.......        
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~---~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~   79 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGK---SVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYT   79 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCC---CEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCC
Confidence            35899999999999999999999998   9999999875420       0000000 000    00000000        


Q ss_pred             -----------CCC----Ccccc----cCCCCCcCChhHHhhcCeEEEeCCcEEEEeCC----C--CEEEcCCCcEEecC
Q 021871          110 -----------RLP----GFHTC----VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE----K--QTLITNSGKLLKYG  164 (306)
Q Consensus       110 -----------~~~----~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~----~--~~v~~~~g~~~~~~  164 (306)
                                 .++    .....    ........+...+++.+++++++++|.++..+    .  ..+.++++ .+++|
T Consensus        80 ~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad  158 (401)
T 2gqf_A           80 NWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCK  158 (401)
T ss_dssp             HHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEES
T ss_pred             HHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECC
Confidence                       000    00000    00001122344456679999999999988743    2  35666655 79999


Q ss_pred             cEEEeeCCCCc
Q 021871          165 SLIVATGCTAS  175 (306)
Q Consensus       165 ~lila~G~~~~  175 (306)
                      +||+|+|..+.
T Consensus       159 ~VVlAtG~~s~  169 (401)
T 2gqf_A          159 NLIVATGGLSM  169 (401)
T ss_dssp             EEEECCCCSSC
T ss_pred             EEEECCCCccC
Confidence            99999998874

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.24  E-value=2.8e-10  Score=107.06  Aligned_cols=56  Identities=16%  Similarity=0.201  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++++++|+++..+ ++.+ .|++.+|+++.+|.||+|+|.
T Consensus       416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~v-~V~t~~G~~i~Ad~VVlAtG~  471 (676)
T 3ps9_A          416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRK-DDCW-LLNFAGDQQATHSVVVLANGH  471 (676)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEe-CCeE-EEEECCCCEEECCEEEECCCc
Confidence            4678888899999999999999999999974 4555 789988889999999999984

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.22  E-value=2.9e-11  Score=106.71  Aligned_cols=56  Identities=21%  Similarity=0.309  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|+++.. +++.+.+|++.+| ++.+|.||+|+|.
T Consensus       173 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~  228 (405)
T 2gag_B          173 HDHVAWAFARKANEMGVDIIQNCEVTGFIK-DGEKVTGVKTTRG-TIHAGKVALAGAG  228 (405)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTC-CEEEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE-eCCEEEEEEeCCc-eEECCEEEECCch
Confidence            446778888999999999999999999997 4566667888888 8999999999984

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.22  E-value=3.2e-11  Score=107.14  Aligned_cols=53  Identities=13%  Similarity=0.167  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ...+.+.+.+.+++.|++|+++++|++|+. +++++  | +.+|+++.+|.||+|+|
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~v--V-~~~g~~~~ad~Vv~a~~  240 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINI-EEKKV--Y-TRDNEEYSFDVAISNVG  240 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEET-TTTEE--E-ETTCCEEECSEEEECSC
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE-ECCEE--E-EeCCcEEEeCEEEECCC
Confidence            467888999999999999999999999996 45665  5 46678999999999987

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.22  E-value=1.5e-10  Score=90.34  Aligned_cols=94  Identities=21%  Similarity=0.273  Sum_probs=79.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      +++|||+|.+|+++|..|++.+.+|+++.+.+..+..             ..++.+.+.+.+.+++.|++++.+ +|+++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            6899999999999999999999999999998765521             114678888999999999999999 99999


Q ss_pred             EeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871          276 EAGSDGRVAAVKLEDGSTIDADTVILLPYDQ  306 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~  306 (306)
                      +..++ .+ .|++++| ++++|.||+|+|..
T Consensus        82 ~~~~~-~~-~v~~~~g-~i~ad~vI~A~G~~  109 (180)
T 2ywl_A           82 RDMGG-VF-EVETEEG-VEKAERLLLCTHKD  109 (180)
T ss_dssp             EECSS-SE-EEECSSC-EEEEEEEEECCTTC
T ss_pred             EEcCC-EE-EEEECCC-EEEECEEEECCCCC
Confidence            97433 33 6888888 99999999999963

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.22  E-value=2.2e-10  Score=101.59  Aligned_cols=57  Identities=12%  Similarity=0.134  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC--EEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~--~i~~d~vv~a~g~  305 (306)
                      ..+...+.+.+++.|++++.+++|++++..+++.+..+.+.+|+  ++.+|.||.|+|.
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~  164 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGY  164 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGG
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCC
Confidence            45566777788888999999999999987556665678888997  6999999999984

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.22  E-value=3.3e-11  Score=107.95  Aligned_cols=57  Identities=21%  Similarity=0.329  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeC--------------CCCcEEEEEeCCCCEE--ecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAG--------------SDGRVAAVKLEDGSTI--DADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--------------~~~~v~~v~~~~G~~i--~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|+++...              +++.+.+|.+.+| ++  .+|.||+|+|.
T Consensus       180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~  252 (448)
T 3axb_A          180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGV  252 (448)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCc
Confidence            4478888999999999999999999999851              3455557888888 78  99999999984

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.21  E-value=4.4e-11  Score=104.82  Aligned_cols=56  Identities=14%  Similarity=0.226  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|++++. +++.+.+|++.+| ++.+|.||+|+|.
T Consensus       148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~-~~~~v~gv~~~~g-~i~a~~VV~A~G~  203 (382)
T 1y56_B          148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLI-ENNEIKGVKTNKG-IIKTGIVVNATNA  203 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTE-EEECSEEEECCGG
T ss_pred             HHHHHHHHHHHHHHCCCEEECCceEEEEEE-ECCEEEEEEECCc-EEECCEEEECcch
Confidence            456778888899999999999999999997 4566666888887 8999999999984

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.21  E-value=6.9e-11  Score=105.54  Aligned_cols=57  Identities=23%  Similarity=0.237  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCc---eEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGA---SIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~---~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|+++++++   +|+++.. +++.+.+|++.+|+++.+|.||+|+|.
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~-~~~~v~gV~t~~G~~i~Ad~VV~AtG~  219 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFLCAGA  219 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEE-ETTEEEEEEETTTEEEECSEEEECCGG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEe-cCCeEEEEEECCCCEEECCEEEECCCC
Confidence            45778888999999999999999   9999987 566777899999989999999999984

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.21  E-value=1.8e-10  Score=101.09  Aligned_cols=68  Identities=18%  Similarity=0.330  Sum_probs=53.0

Q ss_pred             cEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          232 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       232 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ...++.+......   +..+...+.+.+++.|++++.+++|++++.+ ++.+ .|++.+| ++.+|.||+|+|.
T Consensus       136 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~  203 (389)
T 2gf3_A          136 YNAIFEPNSGVLF---SENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDSV-KIETANG-SYTADKLIVSMGA  203 (389)
T ss_dssp             EEEEEETTCEEEE---HHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSCE-EEEETTE-EEEEEEEEECCGG
T ss_pred             ceEEEeCCCcEEe---HHHHHHHHHHHHHHCCCEEEcCcEEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCc
Confidence            4556666554443   5678888999999999999999999999974 4444 5777776 8999999999984

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.18  E-value=6.2e-11  Score=103.66  Aligned_cols=55  Identities=18%  Similarity=0.186  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|+++..+ ++.+ .|++.+| ++.+|.||+|+|.
T Consensus       153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~~-~V~t~~g-~i~a~~VV~A~G~  207 (381)
T 3nyc_A          153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRV-DGAW-EVRCDAG-SYRAAVLVNAAGA  207 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSCCCCEEEEE-TTEE-EEECSSE-EEEESEEEECCGG
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe-CCeE-EEEeCCC-EEEcCEEEECCCh
Confidence            4678888999999999999999999999874 4444 7888887 8999999999984

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.16  E-value=4.3e-11  Score=109.26  Aligned_cols=51  Identities=14%  Similarity=0.078  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .+.+.+.+   +.|++|+++++|++|+.+ ++.+ .|.+.+|+++.+|.||+|+|.
T Consensus       216 ~l~~~l~~---~lg~~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~VI~a~p~  266 (520)
T 1s3e_A          216 QVSERIMD---LLGDRVKLERPVIYIDQT-RENV-LVETLNHEMYEAKYVISAIPP  266 (520)
T ss_dssp             HHHHHHHH---HHGGGEESSCCEEEEECS-SSSE-EEEETTSCEEEESEEEECSCG
T ss_pred             HHHHHHHH---HcCCcEEcCCeeEEEEEC-CCeE-EEEECCCeEEEeCEEEECCCH
Confidence            44444443   347899999999999974 4555 488999989999999999874

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.15  E-value=3.5e-10  Score=100.49  Aligned_cols=55  Identities=22%  Similarity=0.282  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ...+.+.+.+.+++.|++|+++++|++|.. +++++.+|.+. |+++.+|.||+|+|
T Consensus       195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~gv~~~-g~~~~ad~VV~a~~  249 (425)
T 3ka7_A          195 CKGIIDALETVISANGGKIHTGQEVSKILI-ENGKAAGIIAD-DRIHDADLVISNLG  249 (425)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEET-TEEEECSEEEECSC
T ss_pred             HHHHHHHHHHHHHHcCCEEEECCceeEEEE-ECCEEEEEEEC-CEEEECCEEEECCC
Confidence            456888899999999999999999999997 46677678776 77999999999987

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.15  E-value=8.2e-11  Score=95.89  Aligned_cols=114  Identities=15%  Similarity=0.138  Sum_probs=72.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccC----C---CC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG----S---GG  122 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~  122 (306)
                      +.+||+|||||++|+.+|..|++.|.   +|+|+|+.....- .. ... .+..     .....+..-..    .   ..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~---~v~lie~~~~~~G-~~-~~~-~~~~-----~~~~~~~~~~~d~~g~~~~~~   70 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGV---RVGLLTQSLDAVM-MP-FLP-PKPP-----FPPGSLLERAYDPKDERVWAF   70 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTT-CC-SSC-CCSC-----CCTTCHHHHHCCTTCCCHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCCCcCC-cc-cCc-cccc-----cchhhHHhhhccCCCCCHHHH
Confidence            45899999999999999999999998   9999999732110 00 000 0000     00000000000    0   01


Q ss_pred             CcCChhHHhhc-CeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          123 ERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       123 ~~~~~~~~~~~-~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ...+.+.+++. +++++ +++|.++..++.   .+.+.++..+++|++|+|+|....
T Consensus        71 ~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           71 HARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             HHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            12334555665 89988 568998876543   366777878999999999998754

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.14  E-value=1.4e-10  Score=107.01  Aligned_cols=56  Identities=13%  Similarity=0.204  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-CC--CEEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-~G--~~i~~d~vv~a~g~  305 (306)
                      ..+...+.+.+++.|++++.+++|+++... ++.+..|.+. +|  .++.+|.||.|+|.
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV~AdG~  186 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVIDAGGS  186 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEEECCGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEEECCCC
Confidence            456667778888899999999999999963 4444478777 66  47999999999984

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.14  E-value=4.9e-11  Score=104.51  Aligned_cols=123  Identities=17%  Similarity=0.209  Sum_probs=76.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccc--c---------ccc---cCCCCCCCC----
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT--K---------GYL---FPLDKKPAR----  110 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~--~---------~~~---~~~~~~~~~----  110 (306)
                      ++.+||+|||||++|+++|..|++.|+   +|+|+|+.+..........  .         |..   .........    
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   85 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGW---DVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETW   85 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEE
Confidence            446899999999999999999999998   9999999865421100000  0         000   000000000    


Q ss_pred             --------CC--C--cccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871          111 --------LP--G--FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       111 --------~~--~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                              ++  +  ...+........+.+.+.+.+++++++++|.+++.++ .+.+.+|..+++|+||.|+|....
T Consensus        86 ~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A           86 MHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             ETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCH
T ss_pred             eCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHH
Confidence                    00  0  0000000011233344566789999999999998755 888888888999999999998754

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.12  E-value=1.8e-10  Score=100.83  Aligned_cols=55  Identities=13%  Similarity=0.176  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|+++.. +++.+ .|++.+| ++.+|.||+|+|.
T Consensus       163 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~-~~~~~-~v~~~~g-~~~a~~vV~A~G~  217 (382)
T 1ryi_A          163 PYFVCKAYVKAAKMLGAEIFEHTPVLHVER-DGEAL-FIKTPSG-DVWANHVVVASGV  217 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCCCEEEC-SSSSE-EEEETTE-EEEEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCcEEEEEE-ECCEE-EEEcCCc-eEEcCEEEECCCh
Confidence            457788888999999999999999999996 45555 7888877 8999999999984

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.12  E-value=4.6e-11  Score=105.71  Aligned_cols=122  Identities=20%  Similarity=0.292  Sum_probs=74.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCC-------CCcc------ccccccCCCCCCC------
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------RPAL------TKGYLFPLDKKPA------  109 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-------~~~~------~~~~~~~~~~~~~------  109 (306)
                      ++.+||+|||||++|+++|+.|+++|.   +|+|+|+.+..+..       .+.+      ...++ .......      
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~---~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~-~~~~~~~~~~l~~  100 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGR---RVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFL-SGNPHFCKSALAR  100 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEE-ESSTTTTHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHh-hcCHHHHHHHHHh
Confidence            456899999999999999999999998   99999998764210       0000      00000 0000000      


Q ss_pred             -------------CC------CC--cccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcE
Q 021871          110 -------------RL------PG--FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL  166 (306)
Q Consensus       110 -------------~~------~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~l  166 (306)
                                   .+      .+  |...........+...+++.+++++++++|.++..++.  .+.+.++ .+++|+|
T Consensus       101 ~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~V  179 (417)
T 3v76_A          101 YRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASL  179 (417)
T ss_dssp             SCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEE
T ss_pred             cCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEE
Confidence                         00      00  00000001112334445667999999999999976543  5666666 8999999


Q ss_pred             EEeeCCCCc
Q 021871          167 IVATGCTAS  175 (306)
Q Consensus       167 ila~G~~~~  175 (306)
                      |+|+|....
T Consensus       180 IlAtG~~S~  188 (417)
T 3v76_A          180 VVASGGKSI  188 (417)
T ss_dssp             EECCCCSSC
T ss_pred             EECCCCccC
Confidence            999998763

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.09  E-value=3.5e-10  Score=103.03  Aligned_cols=123  Identities=17%  Similarity=0.213  Sum_probs=76.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--------------CCC-Cccc---ccc-ccCCCCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--------------YER-PALT---KGY-LFPLDKKPAR  110 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--------------~~~-~~~~---~~~-~~~~~~~~~~  110 (306)
                      ..+||+|||||++||++|+.|++.|+   +|+|+|+.+...              +.. ....   .+. .+........
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~~G~---kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~  182 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQMGF---NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQ  182 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHHTTC---CCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEE
Confidence            35899999999999999999999998   999999985420              000 0000   000 0000000000


Q ss_pred             --CCCc--------------c-cccC-----------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC---EEEcCCCc
Q 021871          111 --LPGF--------------H-TCVG-----------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGK  159 (306)
Q Consensus       111 --~~~~--------------~-~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~---~v~~~~g~  159 (306)
                        .+.+              . ....           ......+.+.+++.|++++++++|.++..++.   .+.+.++.
T Consensus       183 i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~  262 (549)
T 3nlc_A          183 VKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGE  262 (549)
T ss_dssp             SCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSC
T ss_pred             eccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCC
Confidence              0000              0 0000           00111233445668999999999999976543   47778888


Q ss_pred             EEecCcEEEeeCCCCc
Q 021871          160 LLKYGSLIVATGCTAS  175 (306)
Q Consensus       160 ~~~~~~lila~G~~~~  175 (306)
                      .+.+|.||+|+|..+.
T Consensus       263 ~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          263 EIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             EEECSCEEECCCTTCH
T ss_pred             EEECCEEEECCCCChh
Confidence            8999999999998763

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.08  E-value=3.5e-10  Score=104.04  Aligned_cols=160  Identities=13%  Similarity=0.128  Sum_probs=90.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC-CCCCCCCcccccccc---------CCCCC------------
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA-YAPYERPALTKGYLF---------PLDKK------------  107 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~-~~~~~~~~~~~~~~~---------~~~~~------------  107 (306)
                      ..+||+|||||++|++||..|++.|.   +|+|+|+.. ..+...+....+.+.         .....            
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~---kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f  103 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQ---QTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF  103 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCC---CEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence            35899999999999999999999998   999999874 222111100000000         00000            


Q ss_pred             ---C-CCCCCcccc---cC-CCCCcCChhHHhh-cCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          108 ---P-ARLPGFHTC---VG-SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       108 ---~-~~~~~~~~~---~~-~~~~~~~~~~~~~-~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                         . ..-+.....   .+ ......+...+++ .+++++ +.+|..+..++.   .|.+.+|..+.++.||+|+|..+.
T Consensus       104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence               0 000000000   00 0001122334555 589984 678998865443   467778888999999999998876


Q ss_pred             cCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEe
Q 021871          176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  237 (306)
Q Consensus       176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~  237 (306)
                      .. .     ++|...+              .+.+   +| +.++.+++..+.+.|.+++.+.
T Consensus       183 ~~-~-----i~G~~~~--------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~  220 (651)
T 3ces_A          183 GK-I-----HIGLDNY--------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK  220 (651)
T ss_dssp             CE-E-----ECC-------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred             Cc-c-----ccCcccC--------------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence            32 2     3332211              0222   45 7788999999999998888774

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.07  E-value=1.8e-10  Score=106.04  Aligned_cols=122  Identities=20%  Similarity=0.157  Sum_probs=71.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC---------------ccc----------cccccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALT----------KGYLFPL  104 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---------------~~~----------~~~~~~~  104 (306)
                      +.+||+|||||++||++|+.|++.|+   +|+|+|+.+.......               .+.          .+..+..
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~---~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~  124 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGV---GALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAG  124 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTC---CEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCC
Confidence            45899999999999999999999998   9999999765321100               000          0000000


Q ss_pred             CC-CCCCC-------CCcccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEc--CCC-cEEecCcEEEeeC
Q 021871          105 DK-KPARL-------PGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT--NSG-KLLKYGSLIVATG  171 (306)
Q Consensus       105 ~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~--~~g-~~~~~~~lila~G  171 (306)
                      .. ...+.       +....+........+.+.+.+.+++++++++|.+++.+..  .+.+  .+| ..+++|+||.|.|
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG  204 (570)
T 3fmw_A          125 IFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDG  204 (570)
T ss_dssp             BCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSC
T ss_pred             cccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCC
Confidence            00 00000       0000000000011223334556899999999999877654  4555  567 6899999999999


Q ss_pred             CCC
Q 021871          172 CTA  174 (306)
Q Consensus       172 ~~~  174 (306)
                      ...
T Consensus       205 ~~S  207 (570)
T 3fmw_A          205 GRS  207 (570)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            754

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.06  E-value=9.4e-10  Score=98.88  Aligned_cols=39  Identities=31%  Similarity=0.517  Sum_probs=33.9

Q ss_pred             CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       264 v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ++|+++++|++|+.+++ .+ .|++.+|+++.+|.||+|+|
T Consensus       248 ~~i~~~~~V~~i~~~~~-~~-~v~~~~g~~~~ad~vi~a~p  286 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGS-CY-SLELDNGVTLDADSVIVTAP  286 (470)
T ss_dssp             EEEECSCCEEEEEECSS-SE-EEEESSSCEEEESEEEECSC
T ss_pred             CEEEeCCceEEEEEcCC-eE-EEEECCCCEEECCEEEECCC
Confidence            79999999999997544 44 68999998999999999987

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.06  E-value=4.1e-11  Score=106.70  Aligned_cols=54  Identities=17%  Similarity=0.243  Sum_probs=41.9

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      +..+...+.+.+++.| +|+++++|++|+.+ ++.+ .|++.+|+++++|.||+|+|
T Consensus       203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~vi~a~~  256 (431)
T 3k7m_X          203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQS-GDVV-NVTVKDGHAFQAHSVIVATP  256 (431)
T ss_dssp             TTCTHHHHHHHHTTCS-CEESSCCEEEEECS-SSSE-EEEETTSCCEEEEEEEECSC
T ss_pred             CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEc-CCeE-EEEECCCCEEEeCEEEEecC
Confidence            3344555556666667 99999999999974 4444 58899998899999999998

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.05  E-value=2.9e-10  Score=101.78  Aligned_cols=122  Identities=18%  Similarity=0.287  Sum_probs=74.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC-------CCCcccc-----ccc--cCCCCCC-------
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK-----GYL--FPLDKKP-------  108 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-------~~~~~~~-----~~~--~~~~~~~-------  108 (306)
                      +.+||+|||||++|+++|+.|++.|.   +|+|+|+.+..+-       ....+..     .+.  +......       
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~---~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGA---NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSI  101 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCC---CEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHh
Confidence            35899999999999999999999998   9999999865320       0000000     000  0000000       


Q ss_pred             ------------CCCC----Cccccc-----CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecC
Q 021871          109 ------------ARLP----GFHTCV-----GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYG  164 (306)
Q Consensus       109 ------------~~~~----~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~  164 (306)
                                  ..++    ......     .......+.+.+++.+++++++++|.++..++.   .+.+.+|..+++|
T Consensus       102 ~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad  181 (447)
T 2i0z_A          102 FNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETN  181 (447)
T ss_dssp             SCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECS
T ss_pred             cCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECC
Confidence                        0000    000000     000112233445667999999999999975433   4777777779999


Q ss_pred             cEEEeeCCCC
Q 021871          165 SLIVATGCTA  174 (306)
Q Consensus       165 ~lila~G~~~  174 (306)
                      .||+|+|...
T Consensus       182 ~VVlAtGg~s  191 (447)
T 2i0z_A          182 HVVIAVGGKS  191 (447)
T ss_dssp             CEEECCCCSS
T ss_pred             EEEECCCCCc
Confidence            9999999876

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.05  E-value=3.7e-09  Score=93.04  Aligned_cols=55  Identities=22%  Similarity=0.229  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|++++.+ ++.+ .|++.+| ++.+|.||+|+|.
T Consensus       152 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~v~t~~g-~i~a~~VV~A~G~  206 (397)
T 2oln_A          152 VRGTLAALFTLAQAAGATLRAGETVTELVPD-ADGV-SVTTDRG-TYRAGKVVLACGP  206 (397)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTEE-EEEESSC-EEEEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCEEEEEEEc-CCeE-EEEECCC-EEEcCEEEEcCCc
Confidence            4567777888888999999999999999864 4444 4777766 8999999999984

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.02  E-value=1.7e-09  Score=99.22  Aligned_cols=57  Identities=18%  Similarity=0.328  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+++. ||+++.+ +|+++...+++.+..|.+.+|+++.+|.||.|+|.
T Consensus       193 ~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~  250 (550)
T 2e4g_A          193 AHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGF  250 (550)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGG
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCC
Confidence            346778888888888 9999999 99999875567777899999988999999999984

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.01  E-value=3.5e-10  Score=102.94  Aligned_cols=53  Identities=17%  Similarity=0.254  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ...+.+.+.+.+.+.|+++.++++|++|.. +++   .+++.+|+++.+|.||++++
T Consensus       221 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~-~~~---~v~~~~G~~~~ad~vI~t~P  273 (513)
T 4gde_A          221 TGGIWIAVANTLPKEKTRFGEKGKVTKVNA-NNK---TVTLQDGTTIGYKKLVSTMA  273 (513)
T ss_dssp             HHHHHHHHHHTSCGGGEEESGGGCEEEEET-TTT---EEEETTSCEEEEEEEEECSC
T ss_pred             HHHHHHHHHHHHHhcCeeeecceEEEEEEc-cCC---EEEEcCCCEEECCEEEECCC
Confidence            456778888888899999999999999996 344   36688999999999999876

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.01  E-value=2.6e-09  Score=93.08  Aligned_cols=55  Identities=16%  Similarity=0.254  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|++++.+ ++.+ .|++.+| .+.+|.||+|+|.
T Consensus       148 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~g-~~~a~~vV~a~G~  202 (372)
T 2uzz_A          148 SELAIKTWIQLAKEAGCAQLFNCPVTAIRHD-DDGV-TIETADG-EYQAKKAIVCAGT  202 (372)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSSE-EEEESSC-EEEEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEc-CCEE-EEEECCC-eEEcCEEEEcCCc
Confidence            4577788888999999999999999999974 4444 5888887 6999999999984

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.99  E-value=1.7e-09  Score=95.27  Aligned_cols=124  Identities=11%  Similarity=0.066  Sum_probs=73.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC-c--cccc---cc--cCC-C-CCCCCCCCcccc-
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YL--FPL-D-KKPARLPGFHTC-  117 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~--~~~~---~~--~~~-~-~~~~~~~~~~~~-  117 (306)
                      +.++||+|||||++||++|..|++.|+   +|+|+|+.+....... .  +...   .+  ... . ............ 
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   79 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGV---DVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVD   79 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEe
Confidence            346899999999999999999999998   9999999865311100 0  0000   00  000 0 000000000000 


Q ss_pred             --cCC-------C----CCcCChhHHhh--cCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          118 --VGS-------G----GERQTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       118 --~~~-------~----~~~~~~~~~~~--~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                        .+.       .    ....+...+.+  .+++++++++|.++..+..  .+.+.+|..+++|+||.|.|....
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           80 ALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             TTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             cCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence              000       0    00112222322  3788899999999976543  677788888999999999997653

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.99  E-value=4.3e-10  Score=101.92  Aligned_cols=124  Identities=17%  Similarity=0.048  Sum_probs=75.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCc-cccc---cccCCC----CCCCCCCCcccccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKG---YLFPLD----KKPARLPGFHTCVGS  120 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~-~~~~---~~~~~~----~~~~~~~~~~~~~~~  120 (306)
                      ...+||+|||||++||++|..|++.|+   +|+|+|+.+..+..... ....   .+....    ...+....+..+...
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~---~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  166 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGA---RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIR  166 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHH
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCC---eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHH
Confidence            356899999999999999999999998   99999998764311000 0000   000000    000000000000001


Q ss_pred             CCCcCChhHHhhcCeEEEeCCcEEEEeCC-----CCEEEc--C-CC--cEEecCcEEEeeCCCCc
Q 021871          121 GGERQTPEWYKEKGIEMIYQDPVTSIDIE-----KQTLIT--N-SG--KLLKYGSLIVATGCTAS  175 (306)
Q Consensus       121 ~~~~~~~~~~~~~~v~~~~~~~v~~v~~~-----~~~v~~--~-~g--~~~~~~~lila~G~~~~  175 (306)
                      .....+...+++.+++++++++|.++..+     ...+.+  . +|  ..+++|+||+|+|..+.
T Consensus       167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence            11123445556679999999999999763     235655  3 55  47899999999998765

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.99  E-value=3.4e-10  Score=100.07  Aligned_cols=125  Identities=14%  Similarity=0.097  Sum_probs=70.8

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcc--c-c--------cc---------------c
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL--T-K--------GY---------------L  101 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~--~-~--------~~---------------~  101 (306)
                      .++++||+|||||++||++|+.|++.|+   +|+|+|+.+.........  . .        |.               +
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~---~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~   96 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQSGI---DCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAY   96 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEE
Confidence            4557899999999999999999999998   999999986532100000  0 0        00               0


Q ss_pred             cCCC--CCCCCCCCc--ccccCCCC----CcCChhHHhh--cCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEe
Q 021871          102 FPLD--KKPARLPGF--HTCVGSGG----ERQTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA  169 (306)
Q Consensus       102 ~~~~--~~~~~~~~~--~~~~~~~~----~~~~~~~~~~--~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila  169 (306)
                      ....  .....++..  ........    ...+...+.+  ..++++++++|.+++.++.  .+.+.+|..+++|.||.|
T Consensus        97 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~A  176 (407)
T 3rp8_A           97 RDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAA  176 (407)
T ss_dssp             EETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEEC
T ss_pred             EECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEEC
Confidence            0000  000000000  00000000    0011122211  1167888999999987554  567788889999999999


Q ss_pred             eCCCCc
Q 021871          170 TGCTAS  175 (306)
Q Consensus       170 ~G~~~~  175 (306)
                      .|....
T Consensus       177 dG~~S~  182 (407)
T 3rp8_A          177 DGSHSA  182 (407)
T ss_dssp             CCTTCS
T ss_pred             CCcChH
Confidence            997644

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.99  E-value=9.7e-10  Score=94.81  Aligned_cols=118  Identities=17%  Similarity=0.237  Sum_probs=70.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHH---cCCCCCcEEEeccCCCCCCCCCcc----ccccccCCCCCC----------------
Q 021871           52 REFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYERPAL----TKGYLFPLDKKP----------------  108 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~---~g~~~~~V~vie~~~~~~~~~~~~----~~~~~~~~~~~~----------------  108 (306)
                      +||+|||||++|+++|+.|++   .|+   +|+|+|++...+-.....    ..+..+......                
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~---~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~   78 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPL---YLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYD   78 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCE---EEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCc---eEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHH
Confidence            599999999999999999999   887   999999986543100000    000000000000                


Q ss_pred             --------CCCC----------CcccccCCCCCcCC-hhHHhhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEE
Q 021871          109 --------ARLP----------GFHTCVGSGGERQT-PEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLI  167 (306)
Q Consensus       109 --------~~~~----------~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~li  167 (306)
                              ..+.          .............+ ....++.++++++++.|.++..++  ..+.+.+|..+.+|+||
T Consensus        79 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV  158 (342)
T 3qj4_A           79 ELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIV  158 (342)
T ss_dssp             HHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEE
T ss_pred             HHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEE
Confidence                    0000          00000001111111 122333489999999999998654  36777778778999999


Q ss_pred             EeeCC
Q 021871          168 VATGC  172 (306)
Q Consensus       168 la~G~  172 (306)
                      +|+..
T Consensus       159 ~A~p~  163 (342)
T 3qj4_A          159 LTMPV  163 (342)
T ss_dssp             ECSCH
T ss_pred             ECCCH
Confidence            99973

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.99  E-value=4.5e-09  Score=85.50  Aligned_cols=96  Identities=21%  Similarity=0.248  Sum_probs=76.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc-----------------ccccc------cCHHHHHHHHHHHHHc-C
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-----------------LLQRL------FTPSLAQRYEQLYQQN-G  263 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~-----------------~~~~~------~~~~~~~~~~~~~~~~-g  263 (306)
                      -+|+|||+|..|++.|..|++.+.+|+++.+...                 +....      ....+...+.+.+++. |
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g   83 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   83 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999998721                 11110      0136667788888887 9


Q ss_pred             CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       264 v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++++ +++|+++.. +++.+..|.+.+|+++++|.||+|+|.
T Consensus        84 v~i~-~~~v~~i~~-~~~~v~~v~~~~g~~i~a~~VV~A~G~  123 (232)
T 2cul_A           84 LHLF-QATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGS  123 (232)
T ss_dssp             EEEE-ECCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             cEEE-EeEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCC
Confidence            9999 569999986 456666788999989999999999996

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.98  E-value=2.2e-11  Score=109.63  Aligned_cols=111  Identities=18%  Similarity=0.136  Sum_probs=60.6

Q ss_pred             hHHhhcCeEEEeCCcEEEEeCCCCEE---EcC-CCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHh
Q 021871          128 EWYKEKGIEMIYQDPVTSIDIEKQTL---ITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS  203 (306)
Q Consensus       128 ~~~~~~~v~~~~~~~v~~v~~~~~~v---~~~-~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  203 (306)
                      +.+++.+++++.++.| ++..+...+   .+. ++..+.++.+|+|+|..+..++...+.  ++. ....+..+...-..
T Consensus       127 ~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~~--~~~-tGdgi~~a~~aGa~  202 (472)
T 2e5v_A          127 KLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSSTQ--STN-IGDGMAIAFKAGTI  202 (472)
T ss_dssp             HHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSSC--TTC-SCHHHHHHHHTTCC
T ss_pred             HHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccCC--CCC-chHHHHHHHHcCCC
Confidence            3345678999999889 886554432   332 233578999999999987643321110  000 00000001000000


Q ss_pred             hh-----cC-CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc
Q 021871          204 LE-----KA-KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  245 (306)
Q Consensus       204 ~~-----~~-~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~  245 (306)
                      +.     .. ...+++|+|  +++++..+...+..+ +..++++++++
T Consensus       203 ~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~  247 (472)
T 2e5v_A          203 LADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN  247 (472)
T ss_dssp             EECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG
T ss_pred             EeCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc
Confidence            10     11 123345655  677777777777666 77788888754

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.98  E-value=5.1e-10  Score=98.66  Aligned_cols=122  Identities=16%  Similarity=0.225  Sum_probs=73.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCc--ccc---------cc---------------ccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA--LTK---------GY---------------LFPL  104 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~--~~~---------~~---------------~~~~  104 (306)
                      ++||+|||||++|+++|+.|++.|+   +|+|+|+.+........  +..         +.               ++..
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~---~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   82 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGH---RVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYH   82 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeC
Confidence            4799999999999999999999998   99999998653110000  000         00               0000


Q ss_pred             -CCCC--CCC-----CCccccc-CCCCCcCChhHHhhc-CeEEEeCCcEEEEeCCC--C--EEEcCCCcEEecCcEEEee
Q 021871          105 -DKKP--ARL-----PGFHTCV-GSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVAT  170 (306)
Q Consensus       105 -~~~~--~~~-----~~~~~~~-~~~~~~~~~~~~~~~-~v~~~~~~~v~~v~~~~--~--~v~~~~g~~~~~~~lila~  170 (306)
                       ....  ...     +.+.... .......+.+.+.+. +++++++++|.+++.++  .  .+.+.+|..+++|.||.|+
T Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~Ad  162 (399)
T 2x3n_A           83 DGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGAD  162 (399)
T ss_dssp             TTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECC
T ss_pred             CCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECC
Confidence             0000  000     0000000 000011222334445 89999999999997653  3  6777888889999999999


Q ss_pred             CCCCc
Q 021871          171 GCTAS  175 (306)
Q Consensus       171 G~~~~  175 (306)
                      |....
T Consensus       163 G~~s~  167 (399)
T 2x3n_A          163 GIASY  167 (399)
T ss_dssp             CTTCH
T ss_pred             CCChH
Confidence            97653

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.98  E-value=1.1e-09  Score=105.24  Aligned_cols=56  Identities=27%  Similarity=0.348  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|++++. +++.+.+|.+.+| ++.+|.||+|+|.
T Consensus       150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~v~~V~t~~G-~i~Ad~VV~AaG~  205 (830)
T 1pj5_A          150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGF  205 (830)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGG
T ss_pred             HHHHHHHHHHHHHHcCCEEECCceEEEEEE-eCCEEEEEEECCc-EEECCEEEECCcc
Confidence            557888899999999999999999999997 4566667888887 8999999999984

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.98  E-value=1.1e-08  Score=92.80  Aligned_cols=56  Identities=18%  Similarity=0.249  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ...+.+.+.+.+.+.| ++|+++++|++|+.. ++.+ .|++.+|+++.+|.||+|+|.
T Consensus       254 ~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~vI~a~~~  310 (495)
T 2vvm_A          254 QSAFARRFWEEAAGTGRLGYVFGCPVRSVVNE-RDAA-RVTARDGREFVAKRVVCTIPL  310 (495)
T ss_dssp             HHHHHHHHHHHHHTTTCEEEESSCCEEEEEEC-SSSE-EEEETTCCEEEEEEEEECCCG
T ss_pred             HHHHHHHHHHHhhhcCceEEEeCCEEEEEEEc-CCEE-EEEECCCCEEEcCEEEECCCH
Confidence            4467788888888888 999999999999974 4444 588888888999999999984

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.97  E-value=5e-10  Score=101.57  Aligned_cols=124  Identities=17%  Similarity=0.243  Sum_probs=73.7

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCc--cc---------cccccCCCC-CCCC---CC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA--LT---------KGYLFPLDK-KPAR---LP  112 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~--~~---------~~~~~~~~~-~~~~---~~  112 (306)
                      ..+.+||+|||||++||++|..|++.|+   +|+|+|+.+........  +.         -|..-.... ....   +.
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~---~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGV---EVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFG   84 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEET
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhcccccccccc
Confidence            4556899999999999999999999998   99999998654211000  00         000000000 0000   00


Q ss_pred             C--cc--c----------ccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCc---EEecCcEEEeeCCC
Q 021871          113 G--FH--T----------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVATGCT  173 (306)
Q Consensus       113 ~--~~--~----------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~---~~~~~~lila~G~~  173 (306)
                      +  +.  .          +........+.+.+.+.+++++++++|.++..+..  .+.+.++.   .+++++||.|.|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~  164 (500)
T 2qa1_A           85 GLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGR  164 (500)
T ss_dssp             TEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTT
T ss_pred             ceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcc
Confidence            0  00  0          00000011222334557899999999999976554  45555553   79999999999976


Q ss_pred             C
Q 021871          174 A  174 (306)
Q Consensus       174 ~  174 (306)
                      .
T Consensus       165 S  165 (500)
T 2qa1_A          165 S  165 (500)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.94  E-value=7.3e-10  Score=97.14  Aligned_cols=38  Identities=26%  Similarity=0.435  Sum_probs=34.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      |++|||+||||||+||++|+.|+++|+   +|+|+|+.+..
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~---~V~v~Er~~~~   39 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGL---KTLMIEKRPEI   39 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSST
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            345899999999999999999999999   99999997654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.94  E-value=1.7e-10  Score=102.51  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=34.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcC-CCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g-~~~~~V~vie~~~~~~   90 (306)
                      +++||+|||||++||+||++|++.| +   +|+|+|+++..+
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~---~v~v~E~~~~~G   43 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFH---DYTILERTDHVG   43 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCC---CEEEECSSSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCC---cEEEEECCCCCC
Confidence            4679999999999999999999999 7   999999987754

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.94  E-value=1.1e-09  Score=99.24  Aligned_cols=123  Identities=17%  Similarity=0.223  Sum_probs=73.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCc--cc---------cccccCCCCC-CC-------
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA--LT---------KGYLFPLDKK-PA-------  109 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~--~~---------~~~~~~~~~~-~~-------  109 (306)
                      .+.+||+|||||++||++|..|++.|+   +|+|+|+.+........  +.         -|..-..... ..       
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~---~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   86 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGV---DVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGG   86 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecc
Confidence            456899999999999999999999998   99999998654211000  00         0000000000 00       


Q ss_pred             ----------CCCCcccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCc---EEecCcEEEeeCCCC
Q 021871          110 ----------RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVATGCTA  174 (306)
Q Consensus       110 ----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~---~~~~~~lila~G~~~  174 (306)
                                ..+....+........+.+.+.+.+++++++++|.++..+..  .+.+.++.   .+++|+||.|.|...
T Consensus        87 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A           87 RPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             EEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             eecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence                      000000000000111222334557899999999999976544  55565654   799999999999764

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.93  E-value=5.8e-09  Score=91.87  Aligned_cols=124  Identities=15%  Similarity=0.202  Sum_probs=71.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCc--c--c--c--------ccc-------cCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA--L--T--K--------GYL-------FPLDKK  107 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~--~--~--~--------~~~-------~~~~~~  107 (306)
                      ++.+||+|||||++||++|+.|++.|+   +|+|+|+.+........  +  .  .        |.+       ......
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~  100 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGI---DVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVN  100 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC---EEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEE
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceE
Confidence            456899999999999999999999998   99999998653211000  0  0  0        000       000000


Q ss_pred             CCCCCCccccc------CCC-----CCcCChhHHhhc--CeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCC
Q 021871          108 PARLPGFHTCV------GSG-----GERQTPEWYKEK--GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC  172 (306)
Q Consensus       108 ~~~~~~~~~~~------~~~-----~~~~~~~~~~~~--~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~  172 (306)
                      ..+..+.....      ...     ....+.+.+.+.  +..++++++|.+++.+..  .+.+.+|..+++|+||.|.|.
T Consensus       101 ~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  180 (398)
T 2xdo_A          101 IADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGG  180 (398)
T ss_dssp             EECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCT
T ss_pred             EECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCc
Confidence            00000000000      000     000111222221  346788999999976543  677788888999999999997


Q ss_pred             CCc
Q 021871          173 TAS  175 (306)
Q Consensus       173 ~~~  175 (306)
                      ...
T Consensus       181 ~S~  183 (398)
T 2xdo_A          181 MSK  183 (398)
T ss_dssp             TCS
T ss_pred             chh
Confidence            654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.92  E-value=1.4e-09  Score=98.09  Aligned_cols=55  Identities=29%  Similarity=0.390  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ...+.+.+.+.+++.|++|+++++|++|+..+++.+ .|++. |+++.+|.||+|+|
T Consensus       233 ~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~-~v~~~-~~~~~ad~vv~a~p  287 (477)
T 3nks_A          233 LEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRW-KVSLR-DSSLEADHVISAIP  287 (477)
T ss_dssp             TTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCE-EEECS-SCEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceE-EEEEC-CeEEEcCEEEECCC
Confidence            346788899999999999999999999997444434 57664 55899999999987

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.92  E-value=1.5e-09  Score=99.80  Aligned_cols=57  Identities=18%  Similarity=0.145  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC---C--CEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---G--~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|+++.. +++++.+|++.+   |  ..+.+|.||.|+|.
T Consensus       169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~-~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~  230 (561)
T 3da1_A          169 DARLTLEIMKEAVARGAVALNYMKVESFIY-DQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGP  230 (561)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCCEEEEEEE-cCCeEEEEEEEEcCCCceEEEECCEEEECCCc
Confidence            567778888889999999999999999997 566666777653   4  36899999999984

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.91  E-value=1.6e-09  Score=99.18  Aligned_cols=37  Identities=19%  Similarity=0.332  Sum_probs=33.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ..+||+|||||++||++|+.|+++|+   +|+|+|+.+..
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~---~v~viEr~~~~   40 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGV---RVLVVERRPGL   40 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSSSC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCC
Confidence            45799999999999999999999998   99999998654

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.91  E-value=4.3e-09  Score=95.73  Aligned_cols=56  Identities=18%  Similarity=0.224  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC---EEecC-EEEEecCC
Q 021871          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDAD-TVILLPYD  305 (306)
Q Consensus       250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~---~i~~d-~vv~a~g~  305 (306)
                      .+...+.+.+++.|++|+++++|+++..++++++.+|...++.   ++.+| .||+|||-
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG  262 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGS  262 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCC
Confidence            6788888999999999999999999987447888888776543   58996 99999984

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.90  E-value=2.4e-10  Score=102.04  Aligned_cols=58  Identities=21%  Similarity=0.340  Sum_probs=49.5

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ...+.+.+.+.+++.|++++++++|++|..++++++.+|++.+|+++.||.||++++.
T Consensus       255 ~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~  312 (475)
T 3p1w_A          255 LGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSY  312 (475)
T ss_dssp             TTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGG
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCc
Confidence            4578889999999999999999999999864577888999999989999999999853

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.90  E-value=3.8e-09  Score=96.88  Aligned_cols=159  Identities=14%  Similarity=0.111  Sum_probs=91.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC-CCCCCCCccc-cc----ccc------C-------------CC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA-YAPYERPALT-KG----YLF------P-------------LD  105 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~-~~~~~~~~~~-~~----~~~------~-------------~~  105 (306)
                      .+||+|||||+||++||..|++.|.   +|+|+|+.. ..+...+... .+    .+.      .             +.
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~---kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~  103 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGA---KTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFK  103 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---CEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhccccee
Confidence            5899999999999999999999998   999999974 2221101000 00    000      0             00


Q ss_pred             CC-CCCCCCcccc---cC-CCCCcCChhHHhh-cCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          106 KK-PARLPGFHTC---VG-SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       106 ~~-~~~~~~~~~~---~~-~~~~~~~~~~~~~-~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      .. ...-+.....   .+ ......+...+++ .+++++ +.+|..+..++.   .|.+.+|..+.++.||+|+|..+..
T Consensus       104 ~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~  182 (637)
T 2zxi_A          104 MLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG  182 (637)
T ss_dssp             EESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred             ecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence            00 0000000000   00 0001122334555 489985 679998875443   3677788889999999999988763


Q ss_pred             CCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEe
Q 021871          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  237 (306)
Q Consensus       177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~  237 (306)
                       +.     ++|...+.              +.+   + ++..+.+++..|.+.+.++..+.
T Consensus       183 -~~-----~~G~~~~~--------------~Gr---~-G~~~A~~la~~L~~lG~~v~~l~  219 (637)
T 2zxi_A          183 -VI-----YIGDKMIP--------------GGR---L-GEPRSEGLSDFYRRFDFPLIRFK  219 (637)
T ss_dssp             -EE-----EETTEEEE--------------CSB---T-TBCCBCTHHHHHHHTTCCCEEEE
T ss_pred             -ce-----eccceecC--------------CCC---C-CchhHHHHHHHHHhcCCceEEec
Confidence             22     22322211              112   2 34567888888888887765553

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.88  E-value=2.5e-09  Score=89.83  Aligned_cols=121  Identities=12%  Similarity=0.140  Sum_probs=70.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCCCCCCCCCccccccccCC----C---------CCCCCC-CCc
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAPYERPALTKGYLFPL----D---------KKPARL-PGF  114 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~----~---------~~~~~~-~~~  114 (306)
                      ..+||+|||||++|+++|..|++. |.   +|+|+|+.+..+-...  ..+.....    .         ..++.. ..+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~---~V~viEk~~~~gg~~~--~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~  112 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNV---QVAIIEQSVSPGGGAW--LGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTY  112 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTS---CEEEEESSSSCCTTTT--CCSTTCCCEEEETTTHHHHHHHTCCCEECSSE
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCC---eEEEEECCCCCCCcee--cCCcchHHHHcCcHHHHHHHHcCCCcccCCCE
Confidence            457999999999999999999997 87   9999999875421100  00000000    0         000000 000


Q ss_pred             ccc-cCCCCCcCChhHHhh-cCeEEEeCCcEEEEeCCCCE---EEcC---------CC-----cEEecCcEEEeeCCCCc
Q 021871          115 HTC-VGSGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQT---LITN---------SG-----KLLKYGSLIVATGCTAS  175 (306)
Q Consensus       115 ~~~-~~~~~~~~~~~~~~~-~~v~~~~~~~v~~v~~~~~~---v~~~---------~g-----~~~~~~~lila~G~~~~  175 (306)
                      ... ........+.+.+.+ .+++++.+++|.++..+...   +.+.         ++     ..+++|.+|+|+|..+.
T Consensus       113 ~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~  192 (284)
T 1rp0_A          113 VVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP  192 (284)
T ss_dssp             EEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             EEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchH
Confidence            000 000000122233433 68999999999999765442   2321         22     57999999999997654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.88  E-value=2.2e-09  Score=97.69  Aligned_cols=123  Identities=20%  Similarity=0.306  Sum_probs=72.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC-cc-cc---------ccc---------------cC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-AL-TK---------GYL---------------FP  103 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~~-~~---------~~~---------------~~  103 (306)
                      ..+||+|||||++|+++|+.|++.|+   +|+|+|+.+....... .. +.         +..               +.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~G~---~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~   82 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMRGH---RVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFR   82 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEE
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCC---CEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEE
Confidence            34799999999999999999999998   9999999863221100 00 00         000               00


Q ss_pred             CCCCCCC----C-------CCcccccC-CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCE---E--EcCCCc--EEecC
Q 021871          104 LDKKPAR----L-------PGFHTCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---L--ITNSGK--LLKYG  164 (306)
Q Consensus       104 ~~~~~~~----~-------~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~---v--~~~~g~--~~~~~  164 (306)
                      +......    +       ..+..... ......+.+.+.+.|++++.+++|.++..++..   +  ...+|.  .+++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad  162 (512)
T 3e1t_A           83 WGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHAR  162 (512)
T ss_dssp             CSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEE
T ss_pred             ecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcC
Confidence            0000000    0       00000000 000112333455579999999999999876542   3  344563  79999


Q ss_pred             cEEEeeCCCCc
Q 021871          165 SLIVATGCTAS  175 (306)
Q Consensus       165 ~lila~G~~~~  175 (306)
                      .||.|+|....
T Consensus       163 ~VI~AdG~~S~  173 (512)
T 3e1t_A          163 FIVDASGNRTR  173 (512)
T ss_dssp             EEEECCCTTCS
T ss_pred             EEEECCCcchH
Confidence            99999997654

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.87  E-value=5.3e-09  Score=96.49  Aligned_cols=37  Identities=27%  Similarity=0.437  Sum_probs=33.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ..+||+|||||++||++|+.|+++|.   +|+|+||.+..
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~---~V~vlEk~~~~  161 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGA---KVILIEKEPVI  161 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            35899999999999999999999998   99999998764

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.87  E-value=4.6e-08  Score=90.14  Aligned_cols=58  Identities=17%  Similarity=0.207  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC--CCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~--~G~--~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+++.||+++++++|+++..++++++.+|...  +|+  .+.+|.||+|||.
T Consensus       254 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg  315 (572)
T 1d4d_A          254 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGG  315 (572)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCC
Confidence            446778888999999999999999999976332777677765  564  5899999999985

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.87  E-value=3.9e-08  Score=83.86  Aligned_cols=36  Identities=28%  Similarity=0.381  Sum_probs=32.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~~~   89 (306)
                      .+||+|||||++||++|+.|+++  |+   +|+|+|+....
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~---~V~LiEk~~~~  116 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDL---RITIVEAGVAP  116 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTS---CEEEEESSSSC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCC---EEEEEeCCCcc
Confidence            58999999999999999999998  77   99999998653

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.86  E-value=1.7e-10  Score=107.04  Aligned_cols=38  Identities=24%  Similarity=0.335  Sum_probs=34.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ..+||+|||||++|+++|+.|++.|+   +|+|+|+....+
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~---~V~liE~~~~~g   82 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGY---KVAMFDIGEIDS   82 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCCCS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCC---cEEEEeccCCCC
Confidence            45899999999999999999999998   999999987643

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.85  E-value=9.1e-09  Score=95.01  Aligned_cols=36  Identities=36%  Similarity=0.535  Sum_probs=33.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc------CCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH------GMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~------g~~~~~V~vie~~~~~   89 (306)
                      .+||+|||||++||++|+.|++.      |+   +|+|+|+....
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~---~V~vlEk~~~~   76 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDL---RVCLVEKAAHI   76 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCC---CEEEECSSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCC---cEEEEeCCCCC
Confidence            48999999999999999999999      87   99999998654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.83  E-value=8.3e-08  Score=81.34  Aligned_cols=37  Identities=22%  Similarity=0.469  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~~~   89 (306)
                      ..+||+|||||++||++|+.|++.  |+   +|+|+|+.+..
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~---~V~v~e~~~~~  102 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDL---KVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCC---eEEEEecCccc
Confidence            346999999999999999999998  77   99999998654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.81  E-value=4e-08  Score=84.75  Aligned_cols=96  Identities=18%  Similarity=0.141  Sum_probs=78.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc----------------------c---------CHHHHHHHH
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------F---------TPSLAQRYE  256 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~----------------------~---------~~~~~~~~~  256 (306)
                      .+|+|||+|..|+..|..|++.+.+|+++.+.+.+....                      .         ...+.+.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            369999999999999999999999999999886532110                      0         057778888


Q ss_pred             HHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       257 ~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.+++.|++++.+++|++++. +++.+..|++.+| ++.+|.||+|||.
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~~d~vV~AtG~  130 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSH-FGERLRVVARDGR-QWLARAVISATGT  130 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEE-ETTEEEEEETTSC-EEEEEEEEECCCS
T ss_pred             HHHHHcCCEEEcCCEEEEEEE-CCCcEEEEEeCCC-EEEeCEEEECCCC
Confidence            888999999999999999997 4555523888887 9999999999994

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.81  E-value=3.5e-09  Score=93.04  Aligned_cols=122  Identities=16%  Similarity=0.197  Sum_probs=72.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC---C-CCCCcccc---------c--------------cccC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA---P-YERPALTK---------G--------------YLFP  103 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~-~~~~~~~~---------~--------------~~~~  103 (306)
                      .+||+|||||++|+++|..|++.|+   +|+|+|+.+..   . .....+..         |              ..+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~   78 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIA   78 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEE
Confidence            4799999999999999999999998   99999997631   0 00000000         0              0000


Q ss_pred             CCCC--CCCCC----C-cccccC-CCCCcCChhHHhhcCeEEEeCCcEEEEeCCC---CEEEc-CCCc--EEecCcEEEe
Q 021871          104 LDKK--PARLP----G-FHTCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEK---QTLIT-NSGK--LLKYGSLIVA  169 (306)
Q Consensus       104 ~~~~--~~~~~----~-~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~---~~v~~-~~g~--~~~~~~lila  169 (306)
                      ....  ..+++    + ...... ......+.+.+.+.+++++++++|.++..++   ..+.+ ++|.  .+++|.||.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~A  158 (394)
T 1k0i_A           79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC  158 (394)
T ss_dssp             ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred             ECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEEC
Confidence            0000  00000    0 000000 0001123333455689999999999997642   35666 6776  7999999999


Q ss_pred             eCCCCc
Q 021871          170 TGCTAS  175 (306)
Q Consensus       170 ~G~~~~  175 (306)
                      .|....
T Consensus       159 dG~~S~  164 (394)
T 1k0i_A          159 DGFHGI  164 (394)
T ss_dssp             CCTTCS
T ss_pred             CCCCcH
Confidence            997654

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.80  E-value=6e-10  Score=99.88  Aligned_cols=122  Identities=16%  Similarity=0.201  Sum_probs=71.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--CCCCc--cccccc----------------------cCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPA--LTKGYL----------------------FPL  104 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~--~~~~~~----------------------~~~  104 (306)
                      .+||+|||||++|+++|+.|++.|+   +|+|+|+.+...  .....  +....+                      +..
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~---~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~   82 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGL---KILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSP   82 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSC---CEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECC
Confidence            4899999999999999999999998   999999986421  10000  000000                      000


Q ss_pred             CC-CCCCCCCcccccC-CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCE---EEcC---CCc--EEecCcEEEeeCCCC
Q 021871          105 DK-KPARLPGFHTCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITN---SGK--LLKYGSLIVATGCTA  174 (306)
Q Consensus       105 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~---v~~~---~g~--~~~~~~lila~G~~~  174 (306)
                      .. ....+++...... ......+.+.+.+.|++++.+++|.++..++..   +.+.   +|+  .+++|.||.|+|...
T Consensus        83 ~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s  162 (453)
T 3atr_A           83 DMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR  162 (453)
T ss_dssp             TSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred             CCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence            00 0000000000000 000112223344578999999999998765543   3343   565  799999999999664


Q ss_pred             c
Q 021871          175 S  175 (306)
Q Consensus       175 ~  175 (306)
                      .
T Consensus       163 ~  163 (453)
T 3atr_A          163 S  163 (453)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.80  E-value=4.5e-09  Score=87.22  Aligned_cols=36  Identities=22%  Similarity=0.287  Sum_probs=33.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ..||+||||||+||+||+.|+++|+   +|+|+||.+..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~---~V~v~Ek~~~~   37 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGH---QVHLFDKSRGS   37 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCC
Confidence            4799999999999999999999999   99999998764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.80  E-value=5.1e-09  Score=96.45  Aligned_cols=37  Identities=24%  Similarity=0.420  Sum_probs=33.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ..+||+|||||++||++|+.|++.|.   +|+|+||.+..
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~---~V~vlEk~~~~  156 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGA---NVILVDKAPFS  156 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTC---CEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            45799999999999999999999998   99999998754

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.80  E-value=3.5e-08  Score=89.90  Aligned_cols=98  Identities=15%  Similarity=0.250  Sum_probs=81.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc--------------------------c--------------c-
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------Q--------------R-  245 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~--------------------------~--------------~-  245 (306)
                      ..+|+|||+|+.|+..|..|++.+.+|+++.+++.+.                          .              . 
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            4679999999999999999999999999999885320                          0              0 


Q ss_pred             ------------------------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEe
Q 021871          246 ------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID  295 (306)
Q Consensus       246 ------------------------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~  295 (306)
                                                    .....+.+.+.+.+++.|++++++++|+++.. +++.+.+|++.+|+++.
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~-~~~~v~gV~l~~G~~i~  265 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIK  265 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEE-SSSBEEEEEETTSCEEE
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE-eCCEEEEEEECCCCEEE
Confidence                                          00145666778888889999999999999987 56667689999999999


Q ss_pred             cCEEEEecCC
Q 021871          296 ADTVILLPYD  305 (306)
Q Consensus       296 ~d~vv~a~g~  305 (306)
                      +|.||+|+|.
T Consensus       266 Ad~VVlA~G~  275 (549)
T 3nlc_A          266 SRHVVLAVGH  275 (549)
T ss_dssp             CSCEEECCCT
T ss_pred             CCEEEECCCC
Confidence            9999999995

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.78  E-value=1.8e-09  Score=97.89  Aligned_cols=100  Identities=16%  Similarity=0.164  Sum_probs=77.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------------------------------ccCHHHHH
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------------------------LFTPSLAQ  253 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------------------------------~~~~~~~~  253 (306)
                      ...+|+|||+|..|+.+|..|++.|.+|+++++.+.+...                                .....+.+
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~  170 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQL  170 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHH
Confidence            3568999999999999999999999999999988654210                                00145666


Q ss_pred             HHHHHHHHcCCEEEcCceEEEEEeCC-CCcEEEEEe--C-CC--CEEecCEEEEecCC
Q 021871          254 RYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKL--E-DG--STIDADTVILLPYD  305 (306)
Q Consensus       254 ~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~v~~v~~--~-~G--~~i~~d~vv~a~g~  305 (306)
                      .+.+.+++.|++++++++|++++..+ ++....|++  . +|  .++.+|.||.|+|.
T Consensus       171 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~  228 (497)
T 2bry_A          171 LLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGG  228 (497)
T ss_dssp             HHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCT
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCC
Confidence            77888888999999999999998631 222225666  4 56  47999999999995

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.76  E-value=5.2e-08  Score=83.26  Aligned_cols=96  Identities=17%  Similarity=0.202  Sum_probs=79.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc------------------cCHHHHHHHHHHHHHcCCEEEcC
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------FTPSLAQRYEQLYQQNGVKFVKG  269 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~gv~i~~~  269 (306)
                      .+|+|||+|..|+..|..|++.+.+|+++.+.+.+....                  ....+...+.+.+++.|++++.+
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            579999999999999999999999999999987533110                  13567777888888889999999


Q ss_pred             ceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          270 ASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       270 ~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++|++++..+++.+ .|.+.+|+ +.+|.+|+|||.
T Consensus        88 ~~v~~i~~~~~~~~-~v~~~~g~-~~~d~vVlAtG~  121 (332)
T 3lzw_A           88 QAVESVEKQADGVF-KLVTNEET-HYSKTVIITAGN  121 (332)
T ss_dssp             CCEEEEEECTTSCE-EEEESSEE-EEEEEEEECCTT
T ss_pred             CEEEEEEECCCCcE-EEEECCCE-EEeCEEEECCCC
Confidence            99999997544344 58888884 999999999996

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.74  E-value=5.9e-08  Score=89.59  Aligned_cols=57  Identities=19%  Similarity=0.166  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ..+...+.+.+++.||+++.++.|+++..++++++.+|..   .+|+  .+.+|.||+|||.
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg  204 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG  204 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCC
Confidence            4566778888888899999999999998633677767765   4665  5889999999985

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.74  E-value=3.6e-08  Score=89.43  Aligned_cols=36  Identities=17%  Similarity=0.446  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.+||+|||||++|+++|+.|+++|+   +|+|+|+.+.
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~---~V~llE~~~~   37 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGL---SVLMLEAQDL   37 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSST
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCC---CEEEEECCCC
Confidence            35799999999999999999999998   9999999753

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.73  E-value=1.4e-08  Score=89.38  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=32.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      .+|+||||||+||++|..|+++|+   +|+|+|+.+..
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~---~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGI---KVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC---CEEEEecCCCC
Confidence            489999999999999999999999   99999997654

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.71  E-value=1.6e-08  Score=93.11  Aligned_cols=123  Identities=17%  Similarity=0.286  Sum_probs=71.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC-CCCCC--Cccc--------------cccc--------cC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYER--PALT--------------KGYL--------FP  103 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~-~~~~~--~~~~--------------~~~~--------~~  103 (306)
                      ...+||+|||||++|++||..|++.|.   +|+|+|+... .+...  +...              .+..        ..
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~---kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~   95 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGL---HCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQ   95 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEE
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCC---cEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCc
Confidence            456899999999999999999999998   9999999742 22110  1000              0000        00


Q ss_pred             CCCCC-CCCCCcccc---cC-CCCCcCChhHHhh-cCeEEEeCCcEEEEeCCCCE---EEcCCCcEEecCcEEEeeCCCC
Q 021871          104 LDKKP-ARLPGFHTC---VG-SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTA  174 (306)
Q Consensus       104 ~~~~~-~~~~~~~~~---~~-~~~~~~~~~~~~~-~~v~~~~~~~v~~v~~~~~~---v~~~~g~~~~~~~lila~G~~~  174 (306)
                      +.... ..-+.....   .+ ......+.+.+++ .+++++ +..|..+..++..   +.+.+|..+.++.||+|+|..+
T Consensus        96 f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A           96 FRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFL  174 (641)
T ss_dssp             EEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred             hhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCC
Confidence            00000 000000000   00 0001123334555 388986 4588887654442   6677888899999999999886


Q ss_pred             c
Q 021871          175 S  175 (306)
Q Consensus       175 ~  175 (306)
                      .
T Consensus       175 ~  175 (641)
T 3cp8_A          175 N  175 (641)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.71  E-value=9.3e-08  Score=84.50  Aligned_cols=96  Identities=20%  Similarity=0.238  Sum_probs=77.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc----------------------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------------------------  246 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~----------------------------------------  246 (306)
                      ..+|+|||+|..|+..|..+++.+.+|+++++.+......                                        
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF  106 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence            4579999999999999999999999999999876532100                                        


Q ss_pred             -----------------------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEec
Q 021871          247 -----------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP  303 (306)
Q Consensus       247 -----------------------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~  303 (306)
                                             ....+.+.+.+.+++.||+++++++|+++..+ ++.+ .|++.+| ++.+|.||+|+
T Consensus       107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g-~i~ad~VIlAt  183 (417)
T 3v76_A          107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERT-ASGF-RVTTSAG-TVDAASLVVAS  183 (417)
T ss_dssp             HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTEE-EEEETTE-EEEESEEEECC
T ss_pred             HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCEE-EEEECCc-EEEeeEEEECC
Confidence                                   01256667888888899999999999999864 4444 6888888 99999999999


Q ss_pred             CC
Q 021871          304 YD  305 (306)
Q Consensus       304 g~  305 (306)
                      |.
T Consensus       184 G~  185 (417)
T 3v76_A          184 GG  185 (417)
T ss_dssp             CC
T ss_pred             CC
Confidence            95

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.70  E-value=1.6e-07  Score=81.43  Aligned_cols=98  Identities=14%  Similarity=0.163  Sum_probs=80.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------ccCHHHHHHHHHHHHHcCCEEEc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------LFTPSLAQRYEQLYQQNGVKFVK  268 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~gv~i~~  268 (306)
                      ..+|+|||+|+.|+..|..|++.+.+|+++.+.+.+...                  .....+.+.+.+.+++.+++++.
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            357999999999999999999999999999987654210                  01256777788888888999999


Q ss_pred             CceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          269 GASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       269 ~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +++|+.++..+++.+ .|.+.+|+.+.+|.+|+|+|.
T Consensus        94 ~~~v~~i~~~~~~~~-~v~~~~g~~~~~~~li~AtG~  129 (360)
T 3ab1_A           94 NETVTKYTKLDDGTF-ETRTNTGNVYRSRAVLIAAGL  129 (360)
T ss_dssp             SCCEEEEEECTTSCE-EEEETTSCEEEEEEEEECCTT
T ss_pred             CCEEEEEEECCCceE-EEEECCCcEEEeeEEEEccCC
Confidence            999999997544444 588888889999999999996

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.70  E-value=2.8e-08  Score=89.06  Aligned_cols=98  Identities=16%  Similarity=0.215  Sum_probs=75.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||++|+.+|..|++.|.   +|+++|+.+...-   .         ..     +        .....+.+.+
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~---~V~lv~~~~~~l~---~---------~~-----~--------~~~~~l~~~l  218 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGA---EVIVLEYMDRILP---T---------MD-----L--------EVSRAAERVF  218 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCT---T---------SC-----H--------HHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCCcccc---c---------cC-----H--------HHHHHHHHHH
Confidence            4789999999999999999999997   9999998765310   0         00     0        0013456667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++++++|.+++.+..  .+.++++..+.+|.+|+|+|..++.
T Consensus       219 ~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          219 KKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             HHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             HHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence            888999999999999987554  4555677889999999999988764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.69  E-value=1.4e-08  Score=89.84  Aligned_cols=37  Identities=16%  Similarity=0.270  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCc-EEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~-V~vie~~~~~   89 (306)
                      ..+||+|||||++||++|..|++.|+   + |+|+|+.+..
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~---~~v~v~E~~~~~   40 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGI---GKVTLLESSSEI   40 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC---SEEEEEESSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC---CeEEEEECCCCc
Confidence            45899999999999999999999998   8 9999998653

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.68  E-value=1.9e-07  Score=84.92  Aligned_cols=57  Identities=14%  Similarity=0.204  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+++.|++++.+ +|++++.++++.+..|++.+|+++.+|.||.|+|.
T Consensus       172 ~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  228 (511)
T 2weu_A          172 ADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGF  228 (511)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGG
T ss_pred             HHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCc
Confidence            4567777888888899999999 99999875667666899999988999999999985

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.67  E-value=2.1e-07  Score=79.71  Aligned_cols=96  Identities=17%  Similarity=0.164  Sum_probs=77.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------ccCHHHHHHHHHHHHHcCCEEEcC
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------LFTPSLAQRYEQLYQQNGVKFVKG  269 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~gv~i~~~  269 (306)
                      .+|+|||+|..|+..|..|++.+.+|+++.+.+.+...                  .....+.+.+.+.+++.+++++.+
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   85 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG   85 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence            47999999999999999999999999999987654211                  012456677777888889999999


Q ss_pred             ceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          270 ASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       270 ~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++|+.++.. ++.+ .|.+.+|+.+.+|.+|+|||.
T Consensus        86 ~~v~~i~~~-~~~~-~v~~~~g~~~~~~~lv~AtG~  119 (335)
T 2zbw_A           86 ERAETLERE-GDLF-KVTTSQGNAYTAKAVIIAAGV  119 (335)
T ss_dssp             CCEEEEEEE-TTEE-EEEETTSCEEEEEEEEECCTT
T ss_pred             CEEEEEEEC-CCEE-EEEECCCCEEEeCEEEECCCC
Confidence            999999864 3343 588888888999999999996

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.67  E-value=2.8e-08  Score=91.49  Aligned_cols=57  Identities=16%  Similarity=0.111  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G~--~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|+++.. +++.+.+|++.   +|+  .+.+|.||+|+|.
T Consensus       187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~-~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~  248 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLY-EGDQIVGVKARDLLTDEVIEIKAKLVINTSGP  248 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEBSCEEECCGG
T ss_pred             hHHHHHHHHHHHHHcCCeEEeccEEEEEEE-eCCEEEEEEEEEcCCCCEEEEEcCEEEECCCh
Confidence            556777788888999999999999999987 45566567653   343  6999999999984

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.66  E-value=2.1e-07  Score=77.97  Aligned_cols=97  Identities=19%  Similarity=0.164  Sum_probs=74.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCCccccc-------------------------------------ccCH
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQR-------------------------------------LFTP  249 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~-~~~v~~~~~~~~~~~~-------------------------------------~~~~  249 (306)
                      ..|+|||+|.+|+..|..|++. +.+|+++.+.+.+...                                     ....
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  119 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA  119 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence            4699999999999999999997 9999999998654210                                     0123


Q ss_pred             HHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeC---------CC-----CEEecCEEEEecCC
Q 021871          250 SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG-----STIDADTVILLPYD  305 (306)
Q Consensus       250 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~---------~G-----~~i~~d~vv~a~g~  305 (306)
                      .+...+.+.+.+ .|++++.+++|+++.. +++++.+|.+.         +|     ..+++|.||+|+|.
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~-~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~  189 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGH  189 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEe-cCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCC
Confidence            455566666665 6999999999999986 45666566653         32     47999999999994

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.66  E-value=6.9e-08  Score=85.24  Aligned_cols=96  Identities=18%  Similarity=0.283  Sum_probs=75.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++|+|||||+.|+.+|..|.+.|.   +|+++++.+...-.       . ++                .+....+.+.+
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~~-------~-~~----------------~~~~~~l~~~l  197 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGV---HVSLVETQPRLMSR-------A-AP----------------ATLADFVARYH  197 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSSTT-------T-SC----------------HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---EEEEEEeCCccccc-------c-cC----------------HHHHHHHHHHH
Confidence            5799999999999999999999997   99999987652100       0 00                00013456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.|++++.++++.+++ ++ .+.+.+|..+.+|.+++|+|..|+
T Consensus       198 ~~~GV~i~~~~~v~~i~-~~-~v~~~~g~~i~~D~vi~a~G~~p~  240 (408)
T 2gqw_A          198 AAQGVDLRFERSVTGSV-DG-VVLLDDGTRIAADMVVVGIGVLAN  240 (408)
T ss_dssp             HHTTCEEEESCCEEEEE-TT-EEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHcCcEEEeCCEEEEEE-CC-EEEECCCCEEEcCEEEECcCCCcc
Confidence            88999999999999998 44 788888889999999999998765

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.65  E-value=5.7e-09  Score=92.17  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=32.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~~   88 (306)
                      .+||+|||||++|+++|++|+++  |+   +|+|+|+...
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~---~V~vlE~~~~   72 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGR---SLLLVEEGGL   72 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSCS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCC---eEEEEeCCCC
Confidence            47999999999999999999999  88   9999999753

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.64  E-value=2.7e-07  Score=78.96  Aligned_cols=97  Identities=15%  Similarity=0.173  Sum_probs=76.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC----ccc------------cc----ccCHHHHHHHHHHHHHcCCE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HLL------------QR----LFTPSLAQRYEQLYQQNGVK  265 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~----~~~------------~~----~~~~~~~~~~~~~~~~~gv~  265 (306)
                      ...+|+|||+|..|+..|..|++.+.+|+++.+.+    ...            +.    .....+...+.+.+++.|++
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  100 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE  100 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence            35689999999999999999999999999999854    111            11    11347778888999999999


Q ss_pred             EEcCceEEEEEeCCCCcEEEEEe---CCCCEEecCEEEEecCC
Q 021871          266 FVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTVILLPYD  305 (306)
Q Consensus       266 i~~~~~v~~i~~~~~~~v~~v~~---~~G~~i~~d~vv~a~g~  305 (306)
                      ++.++ |.+++. +++.+ .+.+   .++..+.+|.+|+|||.
T Consensus       101 i~~~~-v~~i~~-~~~~~-~v~~~~~~~~~~~~~d~vvlAtG~  140 (338)
T 3itj_A          101 IITET-VSKVDL-SSKPF-KLWTEFNEDAEPVTTDAIILATGA  140 (338)
T ss_dssp             EECSC-EEEEEC-SSSSE-EEEETTCSSSCCEEEEEEEECCCE
T ss_pred             EEEeE-EEEEEE-cCCEE-EEEEEecCCCcEEEeCEEEECcCC
Confidence            99998 999996 44444 4666   46678999999999984

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.64  E-value=6.6e-08  Score=84.66  Aligned_cols=98  Identities=12%  Similarity=0.177  Sum_probs=75.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|.+.|.   +|+++++.+...-.       . .         +       ......+.+.+
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~~~~-------~-~---------~-------~~~~~~l~~~l  197 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGY---QLDVVAPCEQVMPG-------L-L---------H-------PAAAKAVQAGL  197 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSSTT-------T-S---------C-------HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---eEEEEecCcchhhc-------c-c---------C-------HHHHHHHHHHH
Confidence            5799999999999999999999998   99999987552100       0 0         0       00013456667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.|++++++++|.+++.++.  .+.+.+|..+++|.+++|+|..++
T Consensus       198 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~  244 (384)
T 2v3a_A          198 EGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPR  244 (384)
T ss_dssp             HTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcC
Confidence            788999999999999976543  567778888999999999998765

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.64  E-value=3.2e-08  Score=90.58  Aligned_cols=36  Identities=31%  Similarity=0.460  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHH---cCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~---~g~~~~~V~vie~~~~   88 (306)
                      ..+||+|||||++|+++|+.|++   .|+   +|+|+|+...
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~---~V~liE~~~~   42 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQA---NITLIESAAI   42 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSC---EEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCC---EEEEECCCCC
Confidence            45899999999999999999999   888   9999999653

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.64  E-value=6.6e-08  Score=86.48  Aligned_cols=98  Identities=15%  Similarity=0.105  Sum_probs=76.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...-   .      ++        +        .....+.+.+
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~---~------~~--------~--------~~~~~l~~~l  218 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGA---KTHLFEMFDAPLP---S------FD--------P--------MISETLVEVM  218 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSST---T------SC--------H--------HHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC---EEEEEEeCCchhh---h------hh--------H--------HHHHHHHHHH
Confidence            5799999999999999999999997   9999998754210   0      00        0        0023456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCC---CEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~---~~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.|++++++++|.+++.++   ..+.+++|+.+.+|.+++|+|..|+.
T Consensus       219 ~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          219 NAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN  267 (450)
T ss_dssp             HHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             HHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence            88899999999999998643   36777888889999999999987763

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.63  E-value=3.1e-07  Score=78.00  Aligned_cols=95  Identities=19%  Similarity=0.211  Sum_probs=76.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC--Cccc--------cc---ccCHHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL--------QR---LFTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~--~~~~--------~~---~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      .+|+|||+|..|+..|..|++.+.+|+++++.  ..+.        +.   .....+.+.+.+.+++.|++++. ++|.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            57999999999999999999999999999986  1111        11   11356777788888889999999 89999


Q ss_pred             EEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          275 LEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++. +++.+ .+.+.+|+.+.+|.+|+|||.
T Consensus        95 i~~-~~~~~-~v~~~~g~~~~~d~lvlAtG~  123 (323)
T 3f8d_A           95 IEN-RGDEF-VVKTKRKGEFKADSVILGIGV  123 (323)
T ss_dssp             EEE-C--CE-EEEESSSCEEEEEEEEECCCC
T ss_pred             EEe-cCCEE-EEEECCCCEEEcCEEEECcCC
Confidence            997 34444 588888889999999999985

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.62  E-value=7.7e-08  Score=83.72  Aligned_cols=92  Identities=20%  Similarity=0.278  Sum_probs=73.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHh
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (306)
                      ++++|||||+.|+.+|..|++.|.   +|+++++.+...-          ++     .           +....+.+.++
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~----------~~-----~-----------~~~~~l~~~l~  194 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGY---HVKLIHRGAMFLG----------LD-----E-----------ELSNMIKDMLE  194 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTC---EEEEECSSSCCTT----------CC-----H-----------HHHHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---EEEEEeCCCeecc----------CC-----H-----------HHHHHHHHHHH
Confidence            689999999999999999999997   9999998754210          00     0           00234566788


Q ss_pred             hcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871          132 EKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       132 ~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      +.|++++.++++.+++  ...+.+++|+ +.+|.+++|+|..|+
T Consensus       195 ~~gV~i~~~~~v~~i~--~~~v~~~~g~-i~~D~vi~a~G~~p~  235 (367)
T 1xhc_A          195 ETGVKFFLNSELLEAN--EEGVLTNSGF-IEGKVKICAIGIVPN  235 (367)
T ss_dssp             HTTEEEECSCCEEEEC--SSEEEETTEE-EECSCEEEECCEEEC
T ss_pred             HCCCEEEcCCEEEEEE--eeEEEECCCE-EEcCEEEECcCCCcC
Confidence            8999999999999987  3467788887 999999999998766

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.62  E-value=1.9e-07  Score=86.47  Aligned_cols=35  Identities=26%  Similarity=0.331  Sum_probs=32.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcC--CCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHG--MADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g--~~~~~V~vie~~~~   88 (306)
                      .+||+|||||++||++|+.|++.|  .   +|+|+||...
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~---~V~vlEk~~~   41 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNA---KIALISKVYP   41 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTC---CEEEEESSCG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCC---cEEEEeCCCC
Confidence            479999999999999999999999  6   9999999754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.61  E-value=1.1e-07  Score=85.00  Aligned_cols=98  Identities=16%  Similarity=0.217  Sum_probs=74.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++++|||||++|+.+|..|++.|.   +|+++|+.+...-.       . ++                .+....+.+.
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~~-------~-~~----------------~~~~~~l~~~  200 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGK---KVTVIDILDRPLGV-------Y-LD----------------KEFTDVLTEE  200 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------T-CC----------------HHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCcccccc-------c-CC----------------HHHHHHHHHH
Confidence            46899999999999999999999998   99999987643110       0 00                0002345666


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      +++.|+++++++.|.+++.++.  .+.+ ++..+.+|.+++|+|..|+
T Consensus       201 l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          201 MEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             HHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred             HHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence            7788999999999999987643  3555 4567999999999998776

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.61  E-value=7.7e-08  Score=86.40  Aligned_cols=98  Identities=22%  Similarity=0.317  Sum_probs=76.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+++|||||..|+.+|..|++.|.   +|+++++.+...-.         ++        +        .....+.+.+
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~---~Vtlv~~~~~~l~~---------~~--------~--------~~~~~l~~~l  217 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGS---EVTVVALEDRLLFQ---------FD--------P--------LLSATLAENM  217 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSSTT---------SC--------H--------HHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC---EEEEEEcCCccccc---------cC--------H--------HHHHHHHHHH
Confidence            5699999999999999999999997   99999987542100         00        0        0013456667


Q ss_pred             hhcCeEEEeCCcEEEEeCCC--CEEEcCCCc-EEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGK-LLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~-~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++++++|.+++.++  ..+.+++|+ .+.+|.+++|+|..|+.
T Consensus       218 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          218 HAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             HHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred             HHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence            88999999999999997643  367778888 89999999999988764

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.60  E-value=4.4e-07  Score=81.07  Aligned_cols=97  Identities=23%  Similarity=0.365  Sum_probs=78.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc-------------------c-----------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------R-----------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~-------------------~-----------------------  245 (306)
                      -.|+|||+|..|+-.|..+++.+.+|+++++.+....                   .                       
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED  106 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence            4799999999999999999999999999998753210                   0                       


Q ss_pred             -------------------cc-----CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEE
Q 021871          246 -------------------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL  301 (306)
Q Consensus       246 -------------------~~-----~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~  301 (306)
                                         .+     ...+.+.+.+.+++.||+++++++|+++.. +++.+.+|++.+|+++.+|.||+
T Consensus       107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~-~~~~v~~V~~~~G~~i~Ad~VVl  185 (447)
T 2i0z_A          107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVI  185 (447)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEE
T ss_pred             HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEe-cCCcEEEEEECCCCEEECCEEEE
Confidence                               00     134556677788889999999999999986 45665689999987799999999


Q ss_pred             ecCC
Q 021871          302 LPYD  305 (306)
Q Consensus       302 a~g~  305 (306)
                      |+|.
T Consensus       186 AtGg  189 (447)
T 2i0z_A          186 AVGG  189 (447)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9985

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.60  E-value=4.2e-07  Score=79.52  Aligned_cols=95  Identities=22%  Similarity=0.382  Sum_probs=73.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--ccCH---------HHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--LFTP---------SLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      .-+|+|||+|..|+..|..|...+.+|+++.+.+.....  .++.         .+.....+.+++.|++++.+++|++|
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~i   88 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSI   88 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEE
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEE
Confidence            357999999999999999997778899999998764211  0111         11122456677889999999999999


Q ss_pred             EeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          276 EAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +. ++ +  .|++++|+++.+|.+|+|||.
T Consensus        89 d~-~~-~--~v~~~~g~~~~yd~lvlAtG~  114 (385)
T 3klj_A           89 DP-NN-K--LVTLKSGEKIKYEKLIIASGS  114 (385)
T ss_dssp             ET-TT-T--EEEETTSCEEECSEEEECCCE
T ss_pred             EC-CC-C--EEEECCCCEEECCEEEEecCC
Confidence            95 33 3  478899999999999999984

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.59  E-value=1.7e-07  Score=83.54  Aligned_cols=95  Identities=15%  Similarity=0.261  Sum_probs=76.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+++|||||+.|+.+|..|++.|.   +|+++++.+...-.           .+              .+....+...+
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~ll~~-----------~d--------------~~~~~~~~~~l  198 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGL---HPTLIHRSDKINKL-----------MD--------------ADMNQPILDEL  198 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC---EEEEEESSSCCSTT-----------SC--------------GGGGHHHHHHH
T ss_pred             CcEEEEECCccchhhhHHHHHhcCC---cceeeeeecccccc-----------cc--------------chhHHHHHHHh
Confidence            5689999999999999999999998   99999987553100           00              00124566778


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.+++++++++|.+++.  ..+.+++++.+++|.+++|+|..|+
T Consensus       199 ~~~gV~i~~~~~v~~~~~--~~v~~~~g~~~~~D~vl~a~G~~Pn  241 (437)
T 4eqs_A          199 DKREIPYRLNEEINAING--NEITFKSGKVEHYDMIIEGVGTHPN  241 (437)
T ss_dssp             HHTTCCEEESCCEEEEET--TEEEETTSCEEECSEEEECCCEEES
T ss_pred             hccceEEEeccEEEEecC--CeeeecCCeEEeeeeEEEEeceecC
Confidence            889999999999988764  4688889999999999999998775

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.59  E-value=5e-07  Score=79.44  Aligned_cols=96  Identities=11%  Similarity=0.172  Sum_probs=76.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc--------------------cc---------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------RL---------------------  246 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~--------------------~~---------------------  246 (306)
                      -+|+|||+|..|+..|..+++.+.+|+++++.+.+..                    ..                     
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            4689999999999999999999999999998764310                    00                     


Q ss_pred             ----------------------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC---CCcEEEEEeCCCCEEecCEEEE
Q 021871          247 ----------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS---DGRVAAVKLEDGSTIDADTVIL  301 (306)
Q Consensus       247 ----------------------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~---~~~v~~v~~~~G~~i~~d~vv~  301 (306)
                                            ....+.+.+.+.+++.||++++++.|+++..++   ++.+ .|++.+| ++.+|.||+
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~-~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRF-VLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCE-EEEETTE-EEEESEEEE
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeE-EEEECCC-EEECCEEEE
Confidence                                  134555678888888999999999999998631   3444 6888777 899999999


Q ss_pred             ecCC
Q 021871          302 LPYD  305 (306)
Q Consensus       302 a~g~  305 (306)
                      |||.
T Consensus       163 AtG~  166 (401)
T 2gqf_A          163 ATGG  166 (401)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9985

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.59  E-value=8e-08  Score=86.31  Aligned_cols=98  Identities=11%  Similarity=0.181  Sum_probs=74.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|++.|.   +|+++|+.+...-.         .+                .+....+.+.+
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~~---------~~----------------~~~~~~l~~~l  220 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGA---EVTLIEYMPEILPQ---------GD----------------PETAALLRRAL  220 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSSTT---------SC----------------HHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---eEEEEEcCCccccc---------cC----------------HHHHHHHHHHH
Confidence            4799999999999999999999997   99999987553100         00                00013456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcC-C--Cc--EEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITN-S--GK--LLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~-~--g~--~~~~~~lila~G~~~~~  176 (306)
                      ++.|++++++++|.+++.++.  .+.+. +  |+  .+.+|.+++|+|..|+.
T Consensus       221 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~  273 (464)
T 2eq6_A          221 EKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT  273 (464)
T ss_dssp             HHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESC
T ss_pred             HhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCC
Confidence            889999999999999986543  35544 5  65  79999999999988763

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.59  E-value=3.4e-07  Score=83.63  Aligned_cols=98  Identities=16%  Similarity=0.141  Sum_probs=78.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHH-hCCCcEEEEecCCccccc------------------------------------ccCHH
Q 021871          208 KKVVVVGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQR------------------------------------LFTPS  250 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~-~~~~~v~~~~~~~~~~~~------------------------------------~~~~~  250 (306)
                      .+|+|||+|..|+.+|..|+ +.+.+|+++.+.+.+...                                    ...+.
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 889999999997543210                                    00235


Q ss_pred             HHHHHHHHHHHcCC--EEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          251 LAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       251 ~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.+.+.+.+++.|+  ++.++++|++++..+++....|++.+|+++.+|.||+|+|.
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~  145 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGL  145 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcc
Confidence            66777888888888  89999999999875553334689999988999999999993

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.59  E-value=6.9e-08  Score=86.57  Aligned_cols=97  Identities=18%  Similarity=0.208  Sum_probs=73.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||++|+.+|..|++.|.   +|+++++.+...-   .      ++     .           .....+.+.+
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~---~------~~-----~-----------~~~~~l~~~l  222 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGA---QVSVVEARERILP---T------YD-----S-----------ELTAPVAESL  222 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSST---T------SC-----H-----------HHHHHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC---eEEEEEcCCcccc---c------cC-----H-----------HHHHHHHHHH
Confidence            5789999999999999999999998   9999998765310   0      00     0           0013455667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC-EEEcCCC--cEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ-TLITNSG--KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~-~v~~~~g--~~~~~~~lila~G~~~~~  176 (306)
                      ++.|++++++++|.+++. +. .+..++|  ..+.+|.+++|+|..|+.
T Consensus       223 ~~~gv~i~~~~~v~~i~~-~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~  270 (458)
T 1lvl_A          223 KKLGIALHLGHSVEGYEN-GCLLANDGKGGQLRLEADRVLVAVGRRPRT  270 (458)
T ss_dssp             HHHTCEEETTCEEEEEET-TEEEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred             HHCCCEEEECCEEEEEEe-CCEEEEECCCceEEEECCEEEECcCCCcCC
Confidence            888999999999999987 43 2332345  589999999999988764

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.59  E-value=5.4e-08  Score=89.24  Aligned_cols=36  Identities=17%  Similarity=0.257  Sum_probs=33.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      .+||+|||||++||++|..|++.|+   +|+|+|+.+..
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~---~V~vlEr~~~~   61 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQV---GHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCC
Confidence            4799999999999999999999998   99999998654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.58  E-value=6.5e-07  Score=78.15  Aligned_cols=94  Identities=18%  Similarity=0.231  Sum_probs=77.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-----------------------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  245 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-----------------------------------------  245 (306)
                      ..+|+|||+|..|+.+|..|++.+.+|+++++.+.....                                         
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            468999999999999999999999999999987654210                                         


Q ss_pred             -------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          246 -------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       246 -------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                   .....+...+.+.+++.|++++.+++|++++.  ++   .|++.+|+++.+|.||.|+|.
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~  158 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGV  158 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCT
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCc
Confidence                         00145567788888889999999999999985  44   477888989999999999985

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.58  E-value=3.7e-07  Score=83.60  Aligned_cols=98  Identities=14%  Similarity=0.153  Sum_probs=79.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------------------------ccCHH
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------LFTPS  250 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------~~~~~  250 (306)
                      ..+|+|||+|..|+.+|..|.+.+.+|+++.+.+.+...                                    ...++
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            357999999999999999999999999999996543210                                    01245


Q ss_pred             HHHHHHHHHHHcCC--EEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          251 LAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       251 ~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      +.+.+.+.+++.++  ++.++++|++++..+++....|++.+|+++.+|.||+|||
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG  156 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAG  156 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcC
Confidence            66777888888888  8999999999987555433468999998999999999999

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.58  E-value=3.8e-07  Score=83.93  Aligned_cols=98  Identities=17%  Similarity=0.213  Sum_probs=76.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------------  245 (306)
                      -.|+|||+|..|+-.|..+++.+.+|+++++.+.....                                          
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~  201 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI  201 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            36999999999999999999999999999887532110                                          


Q ss_pred             ---------------------------------------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCC
Q 021871          246 ---------------------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  280 (306)
Q Consensus       246 ---------------------------------------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~  280 (306)
                                                                   .....+...+.+.+++.||+++++++|+++..+++
T Consensus       202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~  281 (566)
T 1qo8_A          202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD  281 (566)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred             HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC
Confidence                                                         00123446677778888999999999999987432


Q ss_pred             CcEEEEEeC--CCC--EEecCEEEEecCC
Q 021871          281 GRVAAVKLE--DGS--TIDADTVILLPYD  305 (306)
Q Consensus       281 ~~v~~v~~~--~G~--~i~~d~vv~a~g~  305 (306)
                      +++.+|.+.  +|+  .+.+|.||+|||.
T Consensus       282 g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg  310 (566)
T 1qo8_A          282 HSVVGAVVHGKHTGYYMIGAKSVVLATGG  310 (566)
T ss_dssp             SBEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred             CcEEEEEEEeCCCcEEEEEcCEEEEecCC
Confidence            777677665  675  6899999999985

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.58  E-value=8.1e-08  Score=84.88  Aligned_cols=98  Identities=17%  Similarity=0.199  Sum_probs=77.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++|+|||||+.|+.+|..|.+.|.   +|+++++.+...-       .. .+                ......+.+.+
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtvv~~~~~~l~-------~~-~~----------------~~~~~~l~~~l  195 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGL---SVTILEAGDELLV-------RV-LG----------------RRIGAWLRGLL  195 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSSH-------HH-HC----------------HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCccch-------hh-cC----------------HHHHHHHHHHH
Confidence            5799999999999999999999997   9999998765310       00 00                00013456667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.|+++++++.|.++..++.  .+.+.+|+.+.+|.+|+|+|..++
T Consensus       196 ~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~  242 (410)
T 3ef6_A          196 TELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPA  242 (410)
T ss_dssp             HHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeec
Confidence            889999999999999987644  688889999999999999998765

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.57  E-value=6.5e-08  Score=90.32  Aligned_cols=36  Identities=28%  Similarity=0.402  Sum_probs=33.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-cCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~-~g~~~~~V~vie~~~~~   89 (306)
                      .+||+|||||++||++|..|++ .|+   +|+|+|+.+..
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~---~V~viEr~~~~   68 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDI---RTCIVEQKEGP   68 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTS---CEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCC---CEEEEeCCCCC
Confidence            5799999999999999999999 898   99999998653

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.56  E-value=2.2e-07  Score=82.22  Aligned_cols=98  Identities=13%  Similarity=0.197  Sum_probs=76.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||+|+.|+.+|..|.+.|.   +|+++++.+...-.       .. +                ......+.+.+
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtvv~~~~~~l~~-------~~-~----------------~~~~~~l~~~l  204 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGV---NVTLLEALPRVLAR-------VA-G----------------EALSEFYQAEH  204 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------TS-C----------------HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCchhhh-------hc-C----------------HHHHHHHHHHH
Confidence            5789999999999999999999997   99999987653100       00 0                00013455667


Q ss_pred             hhcCeEEEeCCcEEEEeCCC-C--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK-Q--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~-~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.|+++++++.|.++..++ .  .+.+++|+.+.+|.+|+|+|..|+
T Consensus       205 ~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          205 RAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPC  252 (415)
T ss_dssp             HHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEES
T ss_pred             HhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccC
Confidence            88999999999999998654 2  578888989999999999998876

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.56  E-value=1.9e-07  Score=84.72  Aligned_cols=98  Identities=15%  Similarity=0.197  Sum_probs=76.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+... .  .      ++                .+....+.+.+
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l-~--~------~d----------------~~~~~~l~~~l  227 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGI---DSYIFARGNRIL-R--K------FD----------------ESVINVLENDM  227 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC---EEEEECSSSSSC-T--T------SC----------------HHHHHHHHHHH
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCC---eEEEEecCCccC-c--c------cc----------------hhhHHHHHHHH
Confidence            5799999999999999999999997   999999876531 0  0      00                00013456678


Q ss_pred             hhcCeEEEeCCcEEEEeCCC---CEEEcCCCcE-EecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKL-LKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~---~~v~~~~g~~-~~~~~lila~G~~~~~  176 (306)
                      ++.|+++++++++.+++.+.   ..+.+++|+. +.+|.+++|+|..|+.
T Consensus       228 ~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          228 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             HhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence            88999999999999997642   3677778877 9999999999988764

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.55  E-value=5.5e-07  Score=83.40  Aligned_cols=56  Identities=16%  Similarity=0.144  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ..+...+.+.+.+.||+++.++.|.++.. +++++.+|..   .+|+  .+.++.||+|||-
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  215 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLM-ENGECRGVIALCIEDGTIHRFRAKNTVIATGG  215 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence            46777788888889999999999999986 4677777765   4675  6889999999984

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.55  E-value=8.7e-08  Score=85.85  Aligned_cols=99  Identities=15%  Similarity=0.256  Sum_probs=73.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++.+...-   .      ++                ......+.+.
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~---~------~~----------------~~~~~~l~~~  220 (455)
T 1ebd_A          169 VPKSLVVIGGGYIGIELGTAYANFGT---KVTILEGAGEILS---G------FE----------------KQMAAIIKKR  220 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSST---T------SC----------------HHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCcccc---c------cC----------------HHHHHHHHHH
Confidence            35799999999999999999999997   9999998755310   0      00                0001345566


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEcC---CCcEEecCcEEEeeCCCCcc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~---~g~~~~~~~lila~G~~~~~  176 (306)
                      +++.|++++++++|.+++.++.  .+.+.   ++..+.+|.+++|+|..|+.
T Consensus       221 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  272 (455)
T 1ebd_A          221 LKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNT  272 (455)
T ss_dssp             HHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESC
T ss_pred             HHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCccc
Confidence            7889999999999999986543  33433   34579999999999988763

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.54  E-value=1.7e-07  Score=84.58  Aligned_cols=99  Identities=16%  Similarity=0.211  Sum_probs=76.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ...+++|||||..|+.+|..|.+.|.   +|+++++.+...-   .      ++     .           .....+.+.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l~---~------~d-----~-----------~~~~~l~~~  235 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLGS---ETHLVIRGETVLR---K------FD-----E-----------CIQNTITDH  235 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTC---EEEEECSSSSSCT---T------SC-----H-----------HHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---ceEEEEeCCcccc---c------cC-----H-----------HHHHHHHHH
Confidence            35799999999999999999999997   9999998765310   0      00     0           001345666


Q ss_pred             HhhcCeEEEeCCcEEEEeCC--C--CEEEcCCC-cEEecCcEEEeeCCCCcc
Q 021871          130 YKEKGIEMIYQDPVTSIDIE--K--QTLITNSG-KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~--~--~~v~~~~g-~~~~~~~lila~G~~~~~  176 (306)
                      +++.|++++++++|.+++.+  .  ..+.+++| ..+.+|.+++|+|..|+.
T Consensus       236 l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          236 YVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             HHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             HHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence            78889999999999999764  2  36777888 789999999999987764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.54  E-value=9.6e-07  Score=76.58  Aligned_cols=94  Identities=17%  Similarity=0.278  Sum_probs=73.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcccc---------------------c--------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQ---------------------R--------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~~~---------------------~--------------------  245 (306)
                      .+|+|||+|..|+..|..|++.+. +|+++.+.+ +..                     .                    
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   83 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEE   83 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhcccccccccccccc
Confidence            369999999999999999999998 999999875 100                     0                    


Q ss_pred             -ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          246 -LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       246 -~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                       .....+...+.+.+++.|++++.+++|.+++.. ++.+ .|.+.+| .+.+|.||+|||.
T Consensus        84 ~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~~d~vVlAtG~  141 (369)
T 3d1c_A           84 HISGETYAEYLQVVANHYELNIFENTVVTNISAD-DAYY-TIATTTE-TYHADYIFVATGD  141 (369)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSSE-EEEESSC-CEEEEEEEECCCS
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEC-CCeE-EEEeCCC-EEEeCEEEECCCC
Confidence             001345566677778889999999999999974 3333 4777776 7999999999995

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.54  E-value=1.8e-07  Score=86.53  Aligned_cols=97  Identities=19%  Similarity=0.312  Sum_probs=77.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||..|+.+|..|.+.|.   +|+++++.+...-.   ..                      ......+.+.+
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~~---~~----------------------~~~~~~l~~~l  238 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGI---EVTLVEMANQVMPP---ID----------------------YEMAAYVHEHM  238 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCTT---SC----------------------HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCccccc---CC----------------------HHHHHHHHHHH
Confidence            5799999999999999999999997   99999987542100   00                      00013456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.|+++++++.|.+++.....+.+.+++.+.+|.+|+|+|..++
T Consensus       239 ~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~  283 (588)
T 3ics_A          239 KNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPE  283 (588)
T ss_dssp             HHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence            889999999999999987666788888889999999999997765

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.54  E-value=9.2e-07  Score=74.83  Aligned_cols=94  Identities=17%  Similarity=0.283  Sum_probs=73.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCc---c--------ccc----ccCHHHHHHHHHHHHHcCCEEEcCceE
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH---L--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGASI  272 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~---~--------~~~----~~~~~~~~~~~~~~~~~gv~i~~~~~v  272 (306)
                      +|+|||+|+.|+..|..|++.+. +|+++.+...   +        .+.    .....+.+.+.+.+++.|++++. ++|
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            68999999999999999999999 9999988521   0        111    11246677778888888999998 689


Q ss_pred             EEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          273 KNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       273 ~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ..++.. ++.+ .|.+.+|+.+.+|.+|+|||.
T Consensus        82 ~~i~~~-~~~~-~v~~~~g~~~~~~~vv~AtG~  112 (311)
T 2q0l_A           82 QRVSKK-DSHF-VILAEDGKTFEAKSVIIATGG  112 (311)
T ss_dssp             EEEEEE-TTEE-EEEETTSCEEEEEEEEECCCE
T ss_pred             EEEEEc-CCEE-EEEEcCCCEEECCEEEECCCC
Confidence            999863 4433 477788889999999999984

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.52  E-value=1.1e-06  Score=74.32  Aligned_cols=96  Identities=18%  Similarity=0.227  Sum_probs=74.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC--ccc-----------ccccCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      +|+|||+|+.|+..|..+++.+.+++++.+..  .+.           +....+.+...+.+.+++.|++++.+++|+.+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            58999999999999999999999999996531  111           00012467777888888899999999999999


Q ss_pred             EeCCC--CcEEEEEeCCCCEEecCEEEEecCC
Q 021871          276 EAGSD--GRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       276 ~~~~~--~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ....+  +.+ .|.+.+|+.+.+|.+|+|||.
T Consensus        83 ~~~~~~~~~~-~v~~~~g~~~~~~~lv~AtG~  113 (310)
T 1fl2_A           83 IPAAVEGGLH-QIETASGAVLKARSIIVATGA  113 (310)
T ss_dssp             ECCSSTTCCE-EEEETTSCEEEEEEEEECCCE
T ss_pred             EecccCCceE-EEEECCCCEEEeCEEEECcCC
Confidence            75322  233 588888889999999999984

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.52  E-value=2.4e-07  Score=83.80  Aligned_cols=98  Identities=18%  Similarity=0.251  Sum_probs=76.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc---CCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCCh
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (306)
                      ..+++|||||..|+.+|..|.+.   |.   +|+++++.+... .  .      ++                ......+.
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~---~Vtlv~~~~~~l-~--~------~d----------------~~~~~~l~  238 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGG---QVDLAYRGDMIL-R--G------FD----------------SELRKQLT  238 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTC---EEEEEESSSSSS-T--T------SC----------------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcC---eEEEEEcCCCcc-c--c------cC----------------HHHHHHHH
Confidence            57999999999999999999999   87   999999876521 0  0      00                00023456


Q ss_pred             hHHhhcCeEEEeCCcEEEEeCCC---CEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          128 EWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       128 ~~~~~~~v~~~~~~~v~~v~~~~---~~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      +.+++.|+++++++.|.++..++   ..+.+++|+.+.+|.+++|+|..|+.
T Consensus       239 ~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          239 EQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             HHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence            67788999999999999998653   36777888889999999999988764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.52  E-value=1.3e-07  Score=85.38  Aligned_cols=98  Identities=12%  Similarity=0.134  Sum_probs=74.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...-   .      ++                .+....+.+.+
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l~---~------~~----------------~~~~~~l~~~l  236 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGS---RLDVVEMMDGLMQ---G------AD----------------RDLVKVWQKQN  236 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSSSSST---T------SC----------------HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEECCcccc---c------cC----------------HHHHHHHHHHH
Confidence            5799999999999999999999997   9999998765310   0      00                00013456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCC----CcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNS----GKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~----g~~~~~~~lila~G~~~~~  176 (306)
                      ++.|++++++++|.+++.++.  .+.+.+    ++.+.+|.+++|+|..|+.
T Consensus       237 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          237 EYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             GGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred             HhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence            888999999999999976543  455555    6678999999999988763

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.52  E-value=2.4e-07  Score=83.85  Aligned_cols=98  Identities=18%  Similarity=0.290  Sum_probs=76.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc---CCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCCh
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (306)
                      ..+++|||||..|+.+|..|.+.   |.   +|+++++.+... .  .      ++                .+....+.
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~---~Vtlv~~~~~~l-~--~------~d----------------~~~~~~l~  242 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGG---KVTLCYRNNLIL-R--G------FD----------------ETIREEVT  242 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTC---EEEEEESSSSSC-T--T------SC----------------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCC---eEEEEEcCCccc-c--c------cC----------------HHHHHHHH
Confidence            57999999999999999999999   87   999999876531 0  0      00                00013456


Q ss_pred             hHHhhcCeEEEeCCcEEEEeCCC---CEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          128 EWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       128 ~~~~~~~v~~~~~~~v~~v~~~~---~~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      +.+++.|++++++++|.+++.++   ..+.+.+|+.+.+|.+++|+|..|+.
T Consensus       243 ~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          243 KQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             HHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence            67888999999999999997653   36777888889999999999987763

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.52  E-value=9.9e-07  Score=81.29  Aligned_cols=98  Identities=19%  Similarity=0.147  Sum_probs=76.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------------  245 (306)
                      ..|+|||+|..|+..|..+++.+.+|+++++.+.....                                          
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~  206 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP  206 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            47999999999999999999999999999887543210                                          


Q ss_pred             ---------------------------------------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCC
Q 021871          246 ---------------------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  280 (306)
Q Consensus       246 ---------------------------------------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~  280 (306)
                                                                   .....+...+.+.+++.||+|+++++|+++..+++
T Consensus       207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~  286 (571)
T 1y0p_A          207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK  286 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred             HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC
Confidence                                                         00124455677778888999999999999987444


Q ss_pred             CcEEEEEeC--CCC--EEecCEEEEecCC
Q 021871          281 GRVAAVKLE--DGS--TIDADTVILLPYD  305 (306)
Q Consensus       281 ~~v~~v~~~--~G~--~i~~d~vv~a~g~  305 (306)
                      +++.+|...  +|+  ++.+|.||+|||.
T Consensus       287 g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg  315 (571)
T 1y0p_A          287 GTVKGILVKGMYKGYYWVKADAVILATGG  315 (571)
T ss_dssp             SCEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             CeEEEEEEEeCCCcEEEEECCeEEEeCCC
Confidence            777677665  575  6899999999985

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.51  E-value=6.4e-08  Score=86.07  Aligned_cols=94  Identities=22%  Similarity=0.331  Sum_probs=70.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcccccccCH----------HHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTP----------SLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      .++|+|||+|..|+..|..|.+.+  .+|+++.+.+.+.-...-+          ++...+.+.+++.||+++.+ +|++
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~   80 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAES   80 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEE
Confidence            368999999999999999998765  6799999987643210111          11112345567789999987 7999


Q ss_pred             EEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          275 LEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      |+.  +++  .|++++|+++++|.+|+|||.
T Consensus        81 Id~--~~~--~V~~~~g~~i~YD~LViAtG~  107 (430)
T 3hyw_A           81 IDP--DAN--TVTTQSGKKIEYDYLVIATGP  107 (430)
T ss_dssp             EET--TTT--EEEETTCCEEECSEEEECCCC
T ss_pred             EEC--CCC--EEEECCCCEEECCEEEEeCCC
Confidence            995  333  488999999999999999995

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.51  E-value=2.7e-07  Score=81.30  Aligned_cols=98  Identities=18%  Similarity=0.217  Sum_probs=76.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||+|+.|+.+|..|.+.|.   +|+++++.+...-.       .. +                ......+.+.+
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtvv~~~~~~~~~-------~~-~----------------~~~~~~l~~~l  194 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGL---EVDVVELAPRVMAR-------VV-T----------------PEISSYFHDRH  194 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTTTT-------TS-C----------------HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---EEEEEeCCCcchhh-------cc-C----------------HHHHHHHHHHH
Confidence            5789999999999999999999997   99999987553100       00 0                00013456667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.|+++++++.|.++..++.   .+.+++|+.+.+|.+|+|+|..++
T Consensus       195 ~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~  242 (404)
T 3fg2_P          195 SGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPN  242 (404)
T ss_dssp             HHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred             HhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccC
Confidence            889999999999999976543   477888989999999999998765

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.50  E-value=2.6e-07  Score=84.24  Aligned_cols=97  Identities=20%  Similarity=0.229  Sum_probs=75.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHh
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (306)
                      ++++|||||..|+.+|..|.+.|.   +|+++++.+...-.         ++                ......+.+.++
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~---~Vtlv~~~~~~l~~---------~~----------------~~~~~~l~~~l~  266 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGR---RTVMLVRTEPLKLI---------KD----------------NETRAYVLDRMK  266 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTTTC---------CS----------------HHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccccc---------cc----------------HHHHHHHHHHHH
Confidence            799999999999999999999997   99999987652100         00                000234566788


Q ss_pred             hcCeEEEeCCcEEEEeC--CC----CEEEcCCCc-EEecCcEEEeeCCCCcc
Q 021871          132 EKGIEMIYQDPVTSIDI--EK----QTLITNSGK-LLKYGSLIVATGCTASR  176 (306)
Q Consensus       132 ~~~v~~~~~~~v~~v~~--~~----~~v~~~~g~-~~~~~~lila~G~~~~~  176 (306)
                      +.|++++++++|.++..  +.    ..+.+++|+ .+.+|.+|+|+|..|+.
T Consensus       267 ~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~  318 (523)
T 1mo9_A          267 EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS  318 (523)
T ss_dssp             HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECC
T ss_pred             hCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCC
Confidence            89999999999999976  33    346777777 89999999999988764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.50  E-value=1.3e-06  Score=74.36  Aligned_cols=96  Identities=22%  Similarity=0.208  Sum_probs=73.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc---c--------ccc----ccCHHHHHHHHHHHHHcCCEEEcCceE
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGASI  272 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~---~--------~~~----~~~~~~~~~~~~~~~~~gv~i~~~~~v  272 (306)
                      .+|+|||+|+.|+..|..|++.+.+|+++.+...   +        .+.    .....+.+.+.+.+++.|++++. .+|
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v   87 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV   87 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence            4799999999999999999999999999998721   0        011    01245677778888889999998 589


Q ss_pred             EEEEeCC-CCc-EEEEEeCCCCEEecCEEEEecCC
Q 021871          273 KNLEAGS-DGR-VAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       273 ~~i~~~~-~~~-v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .+++... ++. + .|.+.+|+.+.+|.+|+|||.
T Consensus        88 ~~i~~~~~~~~~~-~v~~~~g~~~~~~~vv~AtG~  121 (325)
T 2q7v_A           88 QGVQHDATSHPYP-FTVRGYNGEYRAKAVILATGA  121 (325)
T ss_dssp             EEEEECTTSSSCC-EEEEESSCEEEEEEEEECCCE
T ss_pred             EEEEeccCCCceE-EEEECCCCEEEeCEEEECcCC
Confidence            9998641 222 3 466778889999999999984

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.50  E-value=1.1e-06  Score=77.32  Aligned_cols=97  Identities=14%  Similarity=0.087  Sum_probs=76.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-----------------------------------------c--
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----------------------------------------Q--  244 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-----------------------------------------~--  244 (306)
                      .+|+|||+|..|+.+|..|++.+.+|+++++.+...                                         .  
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            469999999999999999999999999998865430                                         0  


Q ss_pred             --c--------------ccCHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEE-EEEeCCCCEEecCEEEEecCC
Q 021871          245 --R--------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVA-AVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       245 --~--------------~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~-~v~~~~G~~i~~d~vv~a~g~  305 (306)
                        .              .....+.+.+.+.+++. |++++.+++|++++.++ +.+. .|++.+|+++.+|.||.|+|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~g~v~~~~g~~~~ad~vV~AdG~  164 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDE-RHAIDQVRLNDGRVLRPRVVVGADGI  164 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECT-TSCEEEEEETTSCEEEEEEEEECCCT
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcC-CceEEEEEECCCCEEECCEEEECCCC
Confidence              0              00124566677777777 99999999999999744 4442 588888989999999999985

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.50  E-value=1.1e-06  Score=73.61  Aligned_cols=95  Identities=15%  Similarity=0.226  Sum_probs=73.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc---------cc---ccCHHHHHHHHHHHHHc-CCEEEcCceEEE
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------QR---LFTPSLAQRYEQLYQQN-GVKFVKGASIKN  274 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~  274 (306)
                      .+|+|||+|..|+..|..|++.+.+|+++.+.+...         +.   .....+...+.+.+++. +++++.+ +|+.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~   81 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD   81 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence            469999999999999999999999999999753211         10   11235667777777776 7888765 8999


Q ss_pred             EEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          275 LEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++.. ++.+ .|.+.+|+++.+|.+|+|||.
T Consensus        82 i~~~-~~~~-~v~~~~g~~~~~d~vviAtG~  110 (297)
T 3fbs_A           82 AKGS-FGEF-IVEIDGGRRETAGRLILAMGV  110 (297)
T ss_dssp             EEEE-TTEE-EEEETTSCEEEEEEEEECCCC
T ss_pred             EEEc-CCeE-EEEECCCCEEEcCEEEECCCC
Confidence            9874 3333 588899988999999999995

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.49  E-value=8.6e-07  Score=75.78  Aligned_cols=94  Identities=16%  Similarity=0.185  Sum_probs=73.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEec----CCccc------------cc----ccCHHHHHHHHHHHHHcCCEEE
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP----ENHLL------------QR----LFTPSLAQRYEQLYQQNGVKFV  267 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~----~~~~~------------~~----~~~~~~~~~~~~~~~~~gv~i~  267 (306)
                      .+|+|||+|..|+.+|..|++.+.+|+++.+    .....            +.    .....+...+.+.+++.|++++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   88 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF   88 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence            4799999999999999999999999999987    22111            11    1134677778888888999999


Q ss_pred             cCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       268 ~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .++ |..++.. ++.+ .|++ +|+++.+|.+|+|+|.
T Consensus        89 ~~~-v~~i~~~-~~~~-~v~~-~~~~~~~~~vv~A~G~  122 (333)
T 1vdc_A           89 TET-VTKVDFS-SKPF-KLFT-DSKAILADAVILAIGA  122 (333)
T ss_dssp             CCC-CCEEECS-SSSE-EEEC-SSEEEEEEEEEECCCE
T ss_pred             EeE-EEEEEEc-CCEE-EEEE-CCcEEEcCEEEECCCC
Confidence            996 9999863 4443 4666 6778999999999984

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.48  E-value=5.7e-07  Score=82.27  Aligned_cols=97  Identities=13%  Similarity=0.105  Sum_probs=77.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------------------------ccCHHH
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------LFTPSL  251 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------~~~~~~  251 (306)
                      .+|+|||+|..|+.+|..|.+.+.+++++.+.+.+...                                    ...+++
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            47999999999999999999999999999998643100                                    012466


Q ss_pred             HHHHHHHHHHcCC--EEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          252 AQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       252 ~~~~~~~~~~~gv--~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ...+.+.+++.++  .+..+++|++++..+++....|++.+|+++.+|.||+|+|
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG  144 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATG  144 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcC
Confidence            6777777888787  7899999999986544333368999998999999999999

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.48  E-value=3.5e-07  Score=81.32  Aligned_cols=98  Identities=15%  Similarity=0.258  Sum_probs=75.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+|+|||||+.|+.+|..|.+.|.   +|+++++.+...-.       . .+                ......+...+
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~---~Vtlv~~~~~~l~~-------~-~~----------------~~~~~~l~~~l  201 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANM---HVTLLDTAARVLER-------V-TA----------------PPVSAFYEHLH  201 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTTTT-------T-SC----------------HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---EEEEEEeCCccccc-------h-hh----------------HHHHHHHHHHH
Confidence            5799999999999999999999998   99999987542100       0 00                00013345667


Q ss_pred             hhcCeEEEeCCcEEEEeC--C-CC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDI--E-KQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~--~-~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.|+++++++.+.+++.  + +.  .+.+.+|..+.+|.+|+|+|..|+
T Consensus       202 ~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~  251 (431)
T 1q1r_A          202 REAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPN  251 (431)
T ss_dssp             HHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred             HhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcC
Confidence            888999999999999975  3 33  577788888999999999997765

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.48  E-value=3e-07  Score=82.79  Aligned_cols=99  Identities=11%  Similarity=0.141  Sum_probs=74.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|.+.|.   +|+++++.+...-.  .               ++       .+....+.+.+
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~~--~---------------~~-------~~~~~~l~~~l  230 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGA---DVTAVEFLGHVGGV--G---------------ID-------MEISKNFQRIL  230 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSSCS--S---------------CC-------HHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCC---EEEEEeccCccCCc--c---------------cC-------HHHHHHHHHHH
Confidence            4789999999999999999999997   99999987652100  0               00       00013456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC---EEE-----cCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ---TLI-----TNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~---~v~-----~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.|++++++++|.+++.++.   .+.     ..++..+.+|.+++|+|..|+.
T Consensus       231 ~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~  284 (474)
T 1zmd_A          231 QKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFT  284 (474)
T ss_dssp             HHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECC
T ss_pred             HHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCC
Confidence            889999999999999986542   344     2456689999999999988763

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.48  E-value=6.8e-07  Score=81.67  Aligned_cols=35  Identities=20%  Similarity=0.317  Sum_probs=32.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      .+||+|||||++||++|+.|++ |.   +|+|+||....
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~---~V~vlEk~~~~   42 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QH---QVIVLSKGPVT   42 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TS---CEEEECSSCTT
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CC---cEEEEECCCCC
Confidence            4799999999999999999999 98   99999998653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.48  E-value=1.9e-07  Score=84.11  Aligned_cols=98  Identities=17%  Similarity=0.282  Sum_probs=73.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...-.         ++                .+....+.+.+
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~~---------~~----------------~~~~~~l~~~l  234 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGS---KVTVVEFQPQIGAS---------MD----------------GEVAKATQKFL  234 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSSSS---------SC----------------HHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCC---EEEEEEeCCccccc---------cC----------------HHHHHHHHHHH
Confidence            5799999999999999999999997   99999987652100         00                00023456677


Q ss_pred             hhcCeEEEeCCcEEEEeC--CCC--EEEcC-----CCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDI--EKQ--TLITN-----SGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~--~~~--~v~~~-----~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.|++++++++|.+++.  ++.  .+.+.     ++..+.+|.+++|+|..|+.
T Consensus       235 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  289 (478)
T 1v59_A          235 KKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYI  289 (478)
T ss_dssp             HHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECC
T ss_pred             HHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCC
Confidence            889999999999999976  443  34443     34579999999999988764

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.46  E-value=4.6e-07  Score=81.93  Aligned_cols=98  Identities=16%  Similarity=0.281  Sum_probs=74.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||||..|+.+|..|++.|.   +|+++++.+...-.       . ++                .+....+.+.
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l~~-------~-~~----------------~~~~~~l~~~  245 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGK---EVVLIDVVDTCLAG-------Y-YD----------------RDLTDLMAKN  245 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------T-SC----------------HHHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC---eEEEEEcccchhhh-------H-HH----------------HHHHHHHHHH
Confidence            45799999999999999999999997   99999987653100       0 00                0001345666


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      +++.|++++++++|.+++.++.  .+.+ ++..+.+|.+++|+|..|+
T Consensus       246 l~~~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          246 MEEHGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             HHTTTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEEC
T ss_pred             HHhCCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcC
Confidence            7889999999999999986543  3555 5678999999999998776

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.46  E-value=2.7e-07  Score=82.86  Aligned_cols=98  Identities=18%  Similarity=0.212  Sum_probs=73.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||..|+.+|..|.+.|.   +|+++++.+...-   .      ++                .+....+.+.+
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~---~------~~----------------~~~~~~l~~~l  222 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGV---DVTIVEFLPRALP---N------ED----------------ADVSKEIEKQF  222 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSST---T------SC----------------HHHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcCCcccc---c------cC----------------HHHHHHHHHHH
Confidence            5799999999999999999999997   9999998754210   0      00                00013456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcC-CC--cEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITN-SG--KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~-~g--~~~~~~~lila~G~~~~~  176 (306)
                      ++.|+++++++++.++..++.  .+.+. +|  ..+.+|.+++|+|..|+.
T Consensus       223 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  273 (464)
T 2a8x_A          223 KKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV  273 (464)
T ss_dssp             HHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECC
T ss_pred             HHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccC
Confidence            888999999999999976543  34443 55  579999999999988763

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.46  E-value=1.4e-06  Score=78.11  Aligned_cols=96  Identities=15%  Similarity=0.159  Sum_probs=73.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHh---CCCc---EEEEecCCcccccc-----------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVG---WKLD---TTIIFPENHLLQRL-----------------------------------  246 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~---~~~~---v~~~~~~~~~~~~~-----------------------------------  246 (306)
                      ++|+|||+|+.|+..|..|++   .+.+   |+++.+.+.+....                                   
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            579999999999999999999   8988   99999876432100                                   


Q ss_pred             ----------------cCHHHHHHHHHHHHHcCCE--EEcCceEEEEEeCCCC-cEEEEEeCC---C--CEEecCEEEEe
Q 021871          247 ----------------FTPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDG-RVAAVKLED---G--STIDADTVILL  302 (306)
Q Consensus       247 ----------------~~~~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~~~-~v~~v~~~~---G--~~i~~d~vv~a  302 (306)
                                      ....+.+.+.+.+++.|++  ++++++|+.++..+++ .+ .|++.+   |  .++.+|.||+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~-~V~~~~~~~g~~~~~~~d~VVvA  161 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTF-TVTVQDHTTDTIYSEEFDYVVCC  161 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEE-EEEEEETTTTEEEEEEESEEEEC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcE-EEEEEEcCCCceEEEEcCEEEEC
Confidence                            0134556677777888998  9999999999864332 33 455544   4  47899999999


Q ss_pred             cC
Q 021871          303 PY  304 (306)
Q Consensus       303 ~g  304 (306)
                      ||
T Consensus       162 tG  163 (464)
T 2xve_A          162 TG  163 (464)
T ss_dssp             CC
T ss_pred             CC
Confidence            99

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.46  E-value=3.6e-07  Score=83.28  Aligned_cols=97  Identities=10%  Similarity=0.108  Sum_probs=75.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      .+.+++|||||..|+.+|..+++.|.   +|+|+++.....            ..+.              +....+...
T Consensus       222 lP~~lvIIGgG~IGlE~A~~~~~lG~---~VTii~~~~~L~------------~~D~--------------ei~~~l~~~  272 (542)
T 4b1b_A          222 DPGKTLVVGASYVALECSGFLNSLGY---DVTVAVRSIVLR------------GFDQ--------------QCAVKVKLY  272 (542)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEESSCSST------------TSCH--------------HHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCC---eEEEeccccccc------------ccch--------------hHHHHHHHH
Confidence            35799999999999999999999998   999998643210            0000              002456677


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      +++.++.++++..+..+.....  .+.+.++..+.+|.|++|+|-.|+
T Consensus       273 l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pn  320 (542)
T 4b1b_A          273 MEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGD  320 (542)
T ss_dssp             HHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCC
Confidence            8889999999999999887554  456677888999999999997766

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.45  E-value=3.5e-07  Score=81.50  Aligned_cols=93  Identities=20%  Similarity=0.297  Sum_probs=73.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHh---CCCcEEEEecCCcccccc----------cCHHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          208 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~---~~~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      ++|+|||+|..|+..|..|++   .+.+|+++.+.+.+....          ....+...+.+.+++.||+++. .+|+.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            689999999999999999998   788999999988752210          1122333456777889999986 58999


Q ss_pred             EEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          275 LEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++. ++.   .|++++|+++.+|.+|+|||.
T Consensus        84 id~-~~~---~V~~~~g~~i~~d~lviAtG~  110 (437)
T 3sx6_A           84 IDA-EAQ---NITLADGNTVHYDYLMIATGP  110 (437)
T ss_dssp             EET-TTT---EEEETTSCEEECSEEEECCCC
T ss_pred             EEc-CCC---EEEECCCCEEECCEEEECCCC
Confidence            985 333   477889988999999999995

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.44  E-value=4.4e-07  Score=82.27  Aligned_cols=98  Identities=12%  Similarity=0.236  Sum_probs=76.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+++|||||+.|+.+|..|.+.|.   +|+++++.+...-   .      ++                ......+.+.+
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l~---~------~d----------------~~~~~~l~~~l  233 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGV---PVTVVASQDHVLP---Y------ED----------------ADAALVLEESF  233 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTC---CEEEECSSSSSSC---C------SS----------------HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCcccc---c------cC----------------HHHHHHHHHHH
Confidence            5789999999999999999999997   9999998765310   0      00                00023456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.|+++++++.|.++..++.  .+.+.++..+.+|.+|+|+|..|+.
T Consensus       234 ~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          234 AERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             HHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence            889999999999999986543  4566677789999999999988764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.42  E-value=2.6e-06  Score=71.94  Aligned_cols=96  Identities=10%  Similarity=0.068  Sum_probs=68.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc----------c--ccccCHHHHHHHHHHHHHcCCEEEcCceEEEEE
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL----------L--QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  276 (306)
                      .|+|||+|+.|+..|..+++.+.+|+++.+...-          .  +...++.+.+...+.+.+.+...+....+..+.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT   87 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence            5899999999999999999999999999875321          0  011124555555555555554444444566666


Q ss_pred             eCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          277 AGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       277 ~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ..+++.. .+.+.+|+++.+|.+|+|||.
T Consensus        88 ~~~~~~~-~v~~~~g~~~~a~~liiATGs  115 (304)
T 4fk1_A           88 KQSTGLF-EIVTKDHTKYLAERVLLATGM  115 (304)
T ss_dssp             ECTTSCE-EEEETTCCEEEEEEEEECCCC
T ss_pred             ecCCCcE-EEEECCCCEEEeCEEEEccCC
Confidence            5455554 688999999999999999995

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.42  E-value=4.6e-07  Score=81.51  Aligned_cols=98  Identities=15%  Similarity=0.175  Sum_probs=75.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..+++|||+|..|+.+|..|.+. |.   +|+++++.+...-.       .. +                ......+.+.
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~---~Vtlv~~~~~~l~~-------~~-~----------------~~~~~~l~~~  211 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGI---DTTVVELADQIMPG-------FT-S----------------KSLSQMLRHD  211 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCC---EEEEECSSSSSSTT-------TS-C----------------HHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCC---cEEEEEccCccccc-------cc-C----------------HHHHHHHHHH
Confidence            57999999999999999999999 97   99999987542100       00 0                0002345667


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      +++.|++++.+++|.+++.++.  .+.+.+|+.+.+|.+|+|+|..++
T Consensus       212 l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~  259 (472)
T 3iwa_A          212 LEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPN  259 (472)
T ss_dssp             HHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEEC
T ss_pred             HHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcC
Confidence            7889999999999999987433  466778889999999999998765

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.41  E-value=1.1e-06  Score=78.69  Aligned_cols=98  Identities=13%  Similarity=0.139  Sum_probs=74.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||..|+.+|..|.+.|.   +|+++++.+...-.       . ++                ......+.+.+
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~~-------~-~d----------------~~~~~~l~~~l  199 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKK---TVHVFESLENLLPK-------Y-FD----------------KEMVAEVQKSL  199 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSSTT-------T-CC----------------HHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCccccc-------c-CC----------------HHHHHHHHHHH
Confidence            5789999999999999999999997   99999987653100       0 00                00023456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCC-C-EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK-Q-TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~-~-~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.|+++++++.|.++...+ . .+.++++ .+.+|.+++|+|..|+.
T Consensus       200 ~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~  246 (452)
T 3oc4_A          200 EKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQL  246 (452)
T ss_dssp             HTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCCC
T ss_pred             HHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCCh
Confidence            88999999999999998433 3 3666666 89999999999988763

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.41  E-value=4e-07  Score=82.12  Aligned_cols=97  Identities=18%  Similarity=0.270  Sum_probs=73.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||||++|+.+|..|.+.|.   +|+++++.+...-         .++                ......+.+.
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~---------~~~----------------~~~~~~l~~~  236 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGK---KVRMIERNDHIGT---------IYD----------------GDMAEYIYKE  236 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTC---EEEEECCGGGTTS---------SSC----------------HHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeCCchhh---------cCC----------------HHHHHHHHHH
Confidence            45799999999999999999999997   9999998754210         000                0001345666


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCE--EEcCCCcEEecCcEEEeeCCCCc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~--v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      +++.|++++++++|.+++.++..  +.++ +..+.+|.+++|+|..++
T Consensus       237 l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D~vi~a~G~~p~  283 (480)
T 3cgb_A          237 ADKHHIEILTNENVKAFKGNERVEAVETD-KGTYKADLVLVSVGVKPN  283 (480)
T ss_dssp             HHHTTCEEECSCCEEEEEESSBEEEEEET-TEEEECSEEEECSCEEES
T ss_pred             HHHcCcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcCEEEECcCCCcC
Confidence            78899999999999999876432  4444 457999999999998765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.41  E-value=4.7e-07  Score=81.39  Aligned_cols=99  Identities=13%  Similarity=0.182  Sum_probs=73.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ...+++|||||+.|+.+|..|.+.|.   +|+++++.+...-   .      ++                .+....+.+.
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~---~------~d----------------~~~~~~l~~~  224 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLGA---EVTVVEFAPRCAP---T------LD----------------EDVTNALVGA  224 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSST---T------SC----------------HHHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCC---EEEEEecCCcccc---c------CC----------------HHHHHHHHHH
Confidence            35799999999999999999999997   9999998755310   0      00                0001345666


Q ss_pred             H-hhcCeEEEeCCcEEEEeCCCC--EEEcC--CC--cEEecCcEEEeeCCCCcc
Q 021871          130 Y-KEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       130 ~-~~~~v~~~~~~~v~~v~~~~~--~v~~~--~g--~~~~~~~lila~G~~~~~  176 (306)
                      + ++.|++++++++|.+++.++.  .+.+.  +|  ..+.+|.+++|+|..|+.
T Consensus       225 l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~  278 (468)
T 2qae_A          225 LAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT  278 (468)
T ss_dssp             HHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECC
T ss_pred             HhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCC
Confidence            7 889999999999999986543  44543  55  579999999999988763

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.41  E-value=1.2e-06  Score=78.22  Aligned_cols=97  Identities=18%  Similarity=0.129  Sum_probs=72.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcccccc--------------------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQRL--------------------------------------  246 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~--~v~~~~~~~~~~~~~--------------------------------------  246 (306)
                      ..+|+|||+|..|+..|..|++.+.  +|+++.+.+.+....                                      
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~   85 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   85 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence            4689999999999999999999998  999999875331000                                      


Q ss_pred             ---------------------------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC---CC---E
Q 021871          247 ---------------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS---T  293 (306)
Q Consensus       247 ---------------------------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---G~---~  293 (306)
                                                 ....+.+.+.+.+++.++.++++++|++++.. ++.+ .|++.+   |+   +
T Consensus        86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~-~~~~-~V~~~~~~~G~~~~~  163 (447)
T 2gv8_A           86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGSW-VVTYKGTKAGSPISK  163 (447)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTEE-EEEEEESSTTCCEEE
T ss_pred             hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeC-CCeE-EEEEeecCCCCeeEE
Confidence                                       01134555666666667889999999999863 4444 465554   76   7


Q ss_pred             EecCEEEEecCC
Q 021871          294 IDADTVILLPYD  305 (306)
Q Consensus       294 i~~d~vv~a~g~  305 (306)
                      +.+|.||+|+|.
T Consensus       164 ~~~d~VVvAtG~  175 (447)
T 2gv8_A          164 DIFDAVSICNGH  175 (447)
T ss_dssp             EEESEEEECCCS
T ss_pred             EEeCEEEECCCC
Confidence            999999999996

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.41  E-value=6e-07  Score=81.02  Aligned_cols=98  Identities=20%  Similarity=0.337  Sum_probs=76.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||+|+.|+.+|..|.+.|.   +|+++++.+...-.         ++        +        .....+.+.+
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l~~---------~~--------~--------~~~~~l~~~l  242 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGV---KTTLLHRGDLILRN---------FD--------Y--------DLRQLLNDAM  242 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSSTT---------SC--------H--------HHHHHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCC---eEEEEECCCccccc---------cC--------H--------HHHHHHHHHH
Confidence            5799999999999999999999997   99999987653100         00        0        0023456667


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.|++++.++.|.++..++.  .+.+.+|+.+.+|.+|+|+|..+..
T Consensus       243 ~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~  290 (484)
T 3o0h_A          243 VAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNT  290 (484)
T ss_dssp             HHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCC
Confidence            888999999999999986543  6777888889999999999987653

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.41  E-value=1.4e-06  Score=76.60  Aligned_cols=94  Identities=23%  Similarity=0.312  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcccccccCHHHH---------HHHHHHHHHcCCEEEcCceEEEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLA---------QRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      +|+|+|||+|+.|+..|..|.+.+  .+|+++++.+..........+.         ..-.+.+.+.||+++.+ +|+.|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            789999999999999999998765  5799999887643211111110         00123456789999987 69999


Q ss_pred             EeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          276 EAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.  +.+  .|.+.+|+++.+|.+|+|||.
T Consensus        81 d~--~~~--~v~~~~g~~i~yd~LviAtG~  106 (401)
T 3vrd_B           81 DP--DKK--LVKTAGGAEFAYDRCVVAPGI  106 (401)
T ss_dssp             ET--TTT--EEEETTSCEEECSEEEECCCE
T ss_pred             Ec--cCc--EEEecccceeecceeeeccCC
Confidence            95  333  477899999999999999984

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.41  E-value=6e-07  Score=80.30  Aligned_cols=97  Identities=16%  Similarity=0.314  Sum_probs=73.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||..|+.+|..|++.|.   +|+++++.+...-.       . ++                .+....+.+.+
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~~-------~-~~----------------~~~~~~l~~~l  201 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNY---NVNLIDGHERVLYK-------Y-FD----------------KEFTDILAKDY  201 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSTTTT-------T-SC----------------HHHHHHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCC---EEEEEEcCCchhhh-------h-hh----------------hhHHHHHHHHH
Confidence            5789999999999999999999997   99999987543100       0 00                00013456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.|++++++++|.+++..+.   .+.+ ++..+.+|.+++|+|..|+
T Consensus       202 ~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          202 EAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             HHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEEEC
T ss_pred             HHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCCCC
Confidence            889999999999999986333   2344 6778999999999998776

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.40  E-value=7.5e-07  Score=81.98  Aligned_cols=97  Identities=15%  Similarity=0.253  Sum_probs=74.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++|+|||||..|+.+|..|++.|.   +|+++++.+...-   ....                      .....+.+.+
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~---~~~~----------------------~~~~~l~~~l  202 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGI---KTTLLELADQVMT---PVDR----------------------EMAGFAHQAI  202 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSCT---TSCH----------------------HHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC---cEEEEEcCCccch---hcCH----------------------HHHHHHHHHH
Confidence            5699999999999999999999997   9999998754210   0000                      0013455667


Q ss_pred             hhcCeEEEeCCcEEEEeC-------------------CCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDI-------------------EKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~-------------------~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.|+++++++.+.++..                   ...  .+.+.+++.+.+|.+++|+|..|.
T Consensus       203 ~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  268 (565)
T 3ntd_A          203 RDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPE  268 (565)
T ss_dssp             HHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccc
Confidence            889999999999999875                   222  466678889999999999997765

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.39  E-value=3.2e-06  Score=71.71  Aligned_cols=94  Identities=18%  Similarity=0.249  Sum_probs=72.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc---c--------ccc----ccCHHHHHHHHHHHHHcCCEEEcCceE
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGASI  272 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~---~--------~~~----~~~~~~~~~~~~~~~~~gv~i~~~~~v  272 (306)
                      .+|+|||+|+.|+..|..|++.+.+|+++.+...   +        .+.    ...+.+.+.+.+.+++.|++++.++ +
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v   84 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I   84 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence            4799999999999999999999999999985410   0        011    1234677777888889999999996 8


Q ss_pred             EEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          273 KNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       273 ~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.++. +++.+ .+ +.+|+.+.+|.+|+|||.
T Consensus        85 ~~i~~-~~~~~-~v-~~~~~~~~~~~lv~AtG~  114 (320)
T 1trb_A           85 NKVDL-QNRPF-RL-NGDNGEYTCDALIIATGA  114 (320)
T ss_dssp             EEEEC-SSSSE-EE-EESSCEEEEEEEEECCCE
T ss_pred             eEEEe-cCCEE-EE-EeCCCEEEcCEEEECCCC
Confidence            89986 34444 34 567789999999999984

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.39  E-value=1.3e-06  Score=75.06  Aligned_cols=94  Identities=17%  Similarity=0.192  Sum_probs=69.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHh---CCCcEEEEecCCcccccc----------------------cCH---H----------
Q 021871          209 KVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------------------FTP---S----------  250 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~---~~~~v~~~~~~~~~~~~~----------------------~~~---~----------  250 (306)
                      +|+|||+|..|+-.|..|++   .+.+|+++++.+....+.                      .+.   .          
T Consensus         3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~   82 (342)
T 3qj4_A            3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA   82 (342)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred             cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence            68999999999999999999   888999998774322100                      000   1          


Q ss_pred             ----------------------------HHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEe
Q 021871          251 ----------------------------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILL  302 (306)
Q Consensus       251 ----------------------------~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a  302 (306)
                                                  +...+....++.|++|+++++|++|+.+ ++.+ .|.+.+|+.+.+|.||+|
T Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~-~~~~-~v~~~~g~~~~ad~vV~A  160 (342)
T 3qj4_A           83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLR-DDKW-EVSKQTGSPEQFDLIVLT  160 (342)
T ss_dssp             TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEEC-SSSE-EEEESSSCCEEESEEEEC
T ss_pred             CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEc-CCEE-EEEECCCCEEEcCEEEEC
Confidence                                        1111222333348999999999999974 4455 588888888999999999


Q ss_pred             cC
Q 021871          303 PY  304 (306)
Q Consensus       303 ~g  304 (306)
                      ++
T Consensus       161 ~p  162 (342)
T 3qj4_A          161 MP  162 (342)
T ss_dssp             SC
T ss_pred             CC
Confidence            87

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.38  E-value=2.7e-07  Score=82.96  Aligned_cols=99  Identities=14%  Similarity=0.239  Sum_probs=74.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||||+.|+.+|..|.+.|.   +|+++++.+...-   .      ++                ......+.+.
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l~---~------~~----------------~~~~~~l~~~  227 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIGS---EVTVVEFASEIVP---T------MD----------------AEIRKQFQRS  227 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC---EEEEECSSSSSST---T------SC----------------HHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCcccc---c------cc----------------HHHHHHHHHH
Confidence            35799999999999999999999997   9999998765310   0      00                0001345667


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEcC---CC--cEEecCcEEEeeCCCCcc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---SG--KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~---~g--~~~~~~~lila~G~~~~~  176 (306)
                      +++.|++++++++|.+++.++.  .+.+.   +|  ..+.+|.+++|+|..|+.
T Consensus       228 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  281 (470)
T 1dxl_A          228 LEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT  281 (470)
T ss_dssp             HHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECC
T ss_pred             HHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCC
Confidence            7889999999999999987543  34443   34  579999999999988763

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.37  E-value=3e-06  Score=72.53  Aligned_cols=95  Identities=21%  Similarity=0.259  Sum_probs=73.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC---cc--------ccc----ccCHHHHHHHHHHHHHcCCEEEcCce
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGAS  271 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~---~~--------~~~----~~~~~~~~~~~~~~~~~gv~i~~~~~  271 (306)
                      ..+|+|||+|+.|+..|..|++.+.+|+++.+..   .+        .+.    ...+.+.+.+.+.+++.|++++.++ 
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-   92 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED-   92 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence            4579999999999999999999999999998531   11        011    1124667777788888999999997 


Q ss_pred             EEEEEeCCCCcEEEE-EeCCCCEEecCEEEEecCC
Q 021871          272 IKNLEAGSDGRVAAV-KLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       272 v~~i~~~~~~~v~~v-~~~~G~~i~~d~vv~a~g~  305 (306)
                      |.+++.  ++.+ .| .+.+|+.+.+|.+|+|||.
T Consensus        93 v~~i~~--~~~~-~v~~~~~g~~~~~d~lviAtG~  124 (335)
T 2a87_A           93 VESVSL--HGPL-KSVVTADGQTHRARAVILAMGA  124 (335)
T ss_dssp             EEEEEC--SSSS-EEEEETTSCEEEEEEEEECCCE
T ss_pred             EEEEEe--CCcE-EEEEeCCCCEEEeCEEEECCCC
Confidence            888885  3333 46 7788889999999999984

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.37  E-value=3.7e-06  Score=76.58  Aligned_cols=98  Identities=18%  Similarity=0.239  Sum_probs=76.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC--ccc-----------ccccCHHHHHHHHHHHHHcCCEEEcCceEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIK  273 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~  273 (306)
                      ..+|+|||+|+.|+..|..+++.+.+|+++.+..  .+.           +....+.+...+.+.+++.|++++.+++|+
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~  291 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS  291 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence            3469999999999999999999999999996531  111           011234677788888889999999999999


Q ss_pred             EEEeCC--CCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          274 NLEAGS--DGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       274 ~i~~~~--~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .+....  ++.+ .|.+.+|+.+.+|.+|+|||.
T Consensus       292 ~i~~~~~~~~~~-~V~~~~g~~~~~d~vVlAtG~  324 (521)
T 1hyu_A          292 KLVPAATEGGLH-QIETASGAVLKARSIIIATGA  324 (521)
T ss_dssp             EEECCSSTTSCE-EEEETTSCEEEEEEEEECCCE
T ss_pred             EEEeccCCCceE-EEEECCCCEEEcCEEEECCCC
Confidence            997522  2233 688888989999999999984

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.36  E-value=4.5e-06  Score=70.88  Aligned_cols=95  Identities=17%  Similarity=0.192  Sum_probs=72.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc---c--------ccc---ccCHHHHHHHHHHHHHcCCEEEcCceE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR---LFTPSLAQRYEQLYQQNGVKFVKGASI  272 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~---~--------~~~---~~~~~~~~~~~~~~~~~gv~i~~~~~v  272 (306)
                      ..+|+|||+|..|+..|..|++.+.+|+++.+...   +        .+.   .....+.+.+.+.+++.|++++. .+|
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v   94 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEV   94 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeE
Confidence            35799999999999999999999999999998421   0        111   11245667777888888999998 689


Q ss_pred             EEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          273 KNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       273 ~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ..++.. ++.+ .|.+ +|+.+.+|.+|+|+|.
T Consensus        95 ~~i~~~-~~~~-~v~~-~~~~~~~~~li~AtG~  124 (319)
T 3cty_A           95 RSIKKT-QGGF-DIET-NDDTYHAKYVIITTGT  124 (319)
T ss_dssp             EEEEEE-TTEE-EEEE-SSSEEEEEEEEECCCE
T ss_pred             EEEEEe-CCEE-EEEE-CCCEEEeCEEEECCCC
Confidence            999863 3433 3666 5668999999999984

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.36  E-value=9.4e-07  Score=79.59  Aligned_cols=99  Identities=14%  Similarity=0.219  Sum_probs=74.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++++|||||+.|+.+|..|.+.|.   +|+++++.+...-.         +  +              ......+.+.
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~~---------~--~--------------~~~~~~l~~~  230 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGA---EVTVLEAMDKFLPA---------V--D--------------EQVAKEAQKI  230 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSSTT---------S--C--------------HHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcCcc---------c--C--------------HHHHHHHHHH
Confidence            35789999999999999999999997   99999987653100         0  0              0002345666


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEcCCC---cEEecCcEEEeeCCCCcc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g---~~~~~~~lila~G~~~~~  176 (306)
                      +++.|+++++++.+.++..++.  .+.+.++   ..+.+|.+++|+|..|+.
T Consensus       231 l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~  282 (476)
T 3lad_A          231 LTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT  282 (476)
T ss_dssp             HHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred             HHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence            7889999999999999986543  4555543   578999999999987763

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.36  E-value=4.1e-06  Score=77.22  Aligned_cols=96  Identities=20%  Similarity=0.214  Sum_probs=74.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc-cc-----------------------cc------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~-~~-----------------------~~------------------  245 (306)
                      -.|+|||+|..|+..|..+++.|.+|.++.+.+. +.                       ..                  
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            3699999999999999999999999999998631 10                       00                  


Q ss_pred             -----------ccC-HHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          246 -----------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       246 -----------~~~-~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                 ..+ ..+...+.+.+++ .|++++ +++|+.+.. +++.+.+|.+.+|..+.+|.||+|||.
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~-e~g~V~GV~t~dG~~I~Ad~VVLATGt  179 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGT  179 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE-SSSBEEEEEETTSEEEEEEEEEECCST
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEe-cCCEEEEEEECCCCEEECCEEEEcCCC
Confidence                       001 1345566777777 699995 568999986 567777899999988999999999995

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.35  E-value=2.8e-06  Score=80.61  Aligned_cols=38  Identities=24%  Similarity=0.453  Sum_probs=34.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ...+||+|||||++||++|+.|++.|+   +|+|+|+.+..
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~  371 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNFGI---KVTVLEAKDRI  371 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEecccce
Confidence            345899999999999999999999998   99999997654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.34  E-value=1.1e-06  Score=78.77  Aligned_cols=97  Identities=19%  Similarity=0.281  Sum_probs=75.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|.+.|.   +|+++++.+... .  ..      +                ......+.+.+
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~---~Vt~v~~~~~~l-~--~~------~----------------~~~~~~l~~~l  221 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGV---KTTLIYRGKEIL-S--RF------D----------------QDMRRGLHAAM  221 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS-T--TS------C----------------HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc-c--cc------C----------------HHHHHHHHHHH
Confidence            5799999999999999999999997   999999876421 0  00      0                00023456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCC-C--EEE-cCCCcEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK-Q--TLI-TNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~-~--~v~-~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ++.|++++.++.|.++..++ .  .+. +++|+ +.+|.+++|+|..|+.
T Consensus       222 ~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~  270 (463)
T 4dna_A          222 EEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNT  270 (463)
T ss_dssp             HHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESC
T ss_pred             HHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCC
Confidence            88999999999999998653 2  577 78887 9999999999987663

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.34  E-value=9.6e-07  Score=79.31  Aligned_cols=95  Identities=18%  Similarity=0.264  Sum_probs=73.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|.+.|.   +|+++++.+... .   ...                      .....+.+.+
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l-~---~~~----------------------~~~~~l~~~l  226 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGS---KVTVLARNTLFF-R---EDP----------------------AIGEAVTAAF  226 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT-T---SCH----------------------HHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---EEEEEEECCccC-C---CCH----------------------HHHHHHHHHH
Confidence            5799999999999999999999997   999999875421 0   000                      0023456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++.|++++.+++|.+++.++.  .+.++ +..+.+|.+++|+|..|+
T Consensus       227 ~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          227 RAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPN  272 (467)
T ss_dssp             HHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEES
T ss_pred             HhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcC
Confidence            889999999999999976544  35554 457999999999998776

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.34  E-value=9.4e-07  Score=79.92  Aligned_cols=97  Identities=14%  Similarity=0.145  Sum_probs=71.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++|+|||||+.|+.+|..|.+.|.   +|+++++.+... .  .      ++        +        .....+.+.+
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l-~--~------~d--------~--------~~~~~l~~~l  225 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGV---IVKVFGRSGSVA-N--L------QD--------E--------EMKRYAEKTF  225 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTC---EEEEECCTTCCT-T--C------CC--------H--------HHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEECCccc-c--c------CC--------H--------HHHHHHHHHH
Confidence            5799999999999999999999997   999999876531 0  0      00        0        0013344556


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC--EEEcC--CC--cEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~--~g--~~~~~~~lila~G~~~~~  176 (306)
                      ++. +++++++.+.++...+.  .+.+.  +|  ..+.+|.+++|+|..|+.
T Consensus       226 ~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~  276 (492)
T 3ic9_A          226 NEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV  276 (492)
T ss_dssp             HTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESC
T ss_pred             hhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCC
Confidence            666 99999999999876543  34443  56  589999999999988763

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.34  E-value=8.1e-07  Score=80.32  Aligned_cols=99  Identities=17%  Similarity=0.205  Sum_probs=73.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||||..|+.+|..|.+.|.   +|+++++.+...-.         ++                ......+.+.
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~~---------~d----------------~~~~~~l~~~  248 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGA---KVTVVEFLDTILGG---------MD----------------GEVAKQLQRM  248 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSSSS---------SC----------------HHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecccccccc---------CC----------------HHHHHHHHHH
Confidence            35789999999999999999999997   99999987653100         00                0002345666


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEcCC---C--cEEecCcEEEeeCCCCcc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS---G--KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~~---g--~~~~~~~lila~G~~~~~  176 (306)
                      +++.+++++.++++.++..++.  .+.+.+   |  ..+.+|.+++|+|..|+.
T Consensus       249 l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  302 (491)
T 3urh_A          249 LTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST  302 (491)
T ss_dssp             HHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECC
T ss_pred             HHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCC
Confidence            7888999999999999876543  344432   4  579999999999988763

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.34  E-value=4.1e-06  Score=73.35  Aligned_cols=97  Identities=16%  Similarity=0.135  Sum_probs=74.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc------cccc-----------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------LQRL-----------------------------------  246 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~------~~~~-----------------------------------  246 (306)
                      .+|+|||+|..|+-+|..|++.+.+|+++++.+..      ....                                   
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            36999999999999999999999999999987631      0000                                   


Q ss_pred             ------------------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe-CCCC--EEecCEEEEecCC
Q 021871          247 ------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       247 ------------------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~-~~G~--~i~~d~vv~a~g~  305 (306)
                                        ....+.+.+.+.+.+.|++++.+++|++++..+++.+ .|++ .+|+  ++.+|.||.|.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence                              0123455667777778999999999999986433444 4666 6786  6999999999985

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.32  E-value=5.1e-06  Score=76.32  Aligned_cols=96  Identities=17%  Similarity=0.239  Sum_probs=75.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc-cc-----------------------cc------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~-~~-----------------------~~------------------  245 (306)
                      -.|+|||+|..|+..|..+++.|.+|.++.+.+. +.                       +.                  
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            4699999999999999999999999999998631 10                       00                  


Q ss_pred             -----------ccC-HHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          246 -----------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       246 -----------~~~-~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                 ..+ ..+...+.+.+++ .|++++ +++|+.+.. +++.+.+|.+.+|..+.+|.||+|||.
T Consensus       108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~-e~g~V~GV~t~dG~~i~AdaVVLATG~  178 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGT  178 (637)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEE-SSSBEEEEEETTSCEEECSEEEECCTT
T ss_pred             ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEEccCC
Confidence                       000 1345566677777 599995 568999986 567777899999999999999999995

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.31  E-value=4.7e-06  Score=74.50  Aligned_cols=97  Identities=20%  Similarity=0.176  Sum_probs=75.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc------c------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------R------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~------~------------------------------------  245 (306)
                      -+|+|||+|..|+-+|..|++.+.+|+++++.+....      .                                    
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            4699999999999999999999999999998754210      0                                    


Q ss_pred             ---------cc-CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871          246 ---------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTVILLPYD  305 (306)
Q Consensus       246 ---------~~-~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G~--~i~~d~vv~a~g~  305 (306)
                               .. ...+.+.+.+.+.+.|++++.+++|+++.. +++.+.+|++.   +|+  ++.+|.||.|+|.
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~-~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~  160 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIF-EDGYVKGAVLFNRRTNEELTVYSKVVVEATGY  160 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSEEEECCGG
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCceEEEEcCEEEECcCC
Confidence                     00 124666777888889999999999999986 45565556554   675  7999999999984

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.29  E-value=8.7e-07  Score=78.18  Aligned_cols=93  Identities=20%  Similarity=0.248  Sum_probs=70.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHh---CCCcEEEEecCCcccccc----------cCHHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          208 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~---~~~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      ++|+|||+|..|+..|..|++   .+.+|+++++.+.+....          ....+...+.+.+++.|++++.+ +|+.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            479999999999999999999   889999999987653210          11123334667777889999988 8999


Q ss_pred             EEeCCCCcEEEEEeCCCCE----EecCEEEEecCC
Q 021871          275 LEAGSDGRVAAVKLEDGST----IDADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~~~~G~~----i~~d~vv~a~g~  305 (306)
                      ++. ++.   .|++.+|+.    +.+|.+|+|||.
T Consensus        81 i~~-~~~---~V~~~~g~~~~~~~~~d~lViAtG~  111 (409)
T 3h8l_A           81 IDA-KSS---MVYYTKPDGSMAEEEYDYVIVGIGA  111 (409)
T ss_dssp             EET-TTT---EEEEECTTSCEEEEECSEEEECCCC
T ss_pred             EeC-CCC---EEEEccCCcccceeeCCEEEECCCC
Confidence            985 333   355556643    999999999995

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.29  E-value=6.9e-07  Score=77.47  Aligned_cols=36  Identities=17%  Similarity=0.372  Sum_probs=32.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+++||+|||||++|+++|++|+++|.   +|+|+|+..
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~---~V~vle~~~   39 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGY---SVHILARDL   39 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---EEEEEeccC
Confidence            346899999999999999999999998   999999874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.28  E-value=6.7e-06  Score=75.21  Aligned_cols=97  Identities=14%  Similarity=0.164  Sum_probs=73.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc--------cc------------cc----------------CHHH
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QR------------LF----------------TPSL  251 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~--------~~------------~~----------------~~~~  251 (306)
                      .+|+|||+|.+|+.+|..|.+.+.+++++++.+.+.        +.            .+                .+.+
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            369999999999999999999999999999875431        00            00                1234


Q ss_pred             HHHHHHHHHHcC--CEEEcCceEEEEEeCCC-CcEEEEEeCCCCEEecCEEEEecCC
Q 021871          252 AQRYEQLYQQNG--VKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       252 ~~~~~~~~~~~g--v~i~~~~~v~~i~~~~~-~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .+.+.+..++.+  +++.++++|++++..++ +.+ .|++.+|+++.+|.||+|+|.
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w-~V~~~~G~~~~ad~vV~AtG~  152 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW-TVDTNHGDRIRARYLIMASGQ  152 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEE-EEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeE-EEEECCCCEEEeCEEEECcCC
Confidence            455555556554  67899999999987444 344 688899989999999999994

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.28  E-value=8e-07  Score=77.08  Aligned_cols=38  Identities=21%  Similarity=0.302  Sum_probs=34.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC-CCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE-AYA   89 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~-~~~   89 (306)
                      ...+||+|||||++||++|+.|.+.|+   +|+|+|++ +..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~---~V~VlE~~~~~v   80 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGH---DVTILEANANRV   80 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSC---EEEEECSCSSCC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCC---cEEEEecccccc
Confidence            456899999999999999999999998   99999998 654

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.28  E-value=1.8e-06  Score=77.14  Aligned_cols=98  Identities=19%  Similarity=0.250  Sum_probs=71.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++++|||||..|+.+|..|.+.|.   +|+++++.+...-.        .++                ......+.+.
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~~--------~~~----------------~~~~~~l~~~  199 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGK---NVTMIVRGERVLRR--------SFD----------------KEVTDILEEK  199 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT--------TSC----------------HHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC---eEEEEEcCCccchh--------hcC----------------HHHHHHHHHH
Confidence            34699999999999999999999997   99999987653100        000                0001334555


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC-EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ-TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~-~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      +++. ++++.++.+.+++.+.. .....++..+.+|.+++|+|..|+
T Consensus       200 l~~~-v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~  245 (449)
T 3kd9_A          200 LKKH-VNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPN  245 (449)
T ss_dssp             HTTT-SEEEESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEEEC
T ss_pred             HHhC-cEEEeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCccC
Confidence            6667 99999999999986543 223446678999999999997765

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.27  E-value=5e-07  Score=84.60  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=32.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-----cCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVE-----HGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~-----~g~~~~~V~vie~~~~   88 (306)
                      .+||+|||||++||++|..|++     .|+   +|+|+|+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi---~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDL---KVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTC---CEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCC---CEEEEeCCCC
Confidence            4799999999999999999999     998   9999999765

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.27  E-value=1.3e-06  Score=78.64  Aligned_cols=98  Identities=17%  Similarity=0.152  Sum_probs=72.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||..|+.+|..|++.|.   +|+++++.+... .  .         ..             ......+.+.+
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l-~--~---------~d-------------~~~~~~~~~~l  238 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGS---KTSLMIRHDKVL-R--S---------FD-------------SMISTNCTEEL  238 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC-T--T---------SC-------------HHHHHHHHHHH
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCC---eEEEEEeCCccc-c--c---------cC-------------HHHHHHHHHHH
Confidence            4789999999999999999999997   999999875531 0  0         00             00013456678


Q ss_pred             hhcCeEEEeCCcEEEEeCCC-C---EEEcCC---C----cEEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK-Q---TLITNS---G----KLLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~-~---~v~~~~---g----~~~~~~~lila~G~~~~~  176 (306)
                      ++.+++++.++.+.++.... .   .+.+.+   +    ..+.+|.+++|+|..|+.
T Consensus       239 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~  295 (478)
T 3dk9_A          239 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT  295 (478)
T ss_dssp             HHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESC
T ss_pred             HHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCC
Confidence            88999999999999987542 2   355554   2    578999999999987663

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.27  E-value=7.1e-06  Score=75.58  Aligned_cols=107  Identities=19%  Similarity=0.285  Sum_probs=75.5

Q ss_pred             HHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc-cc-----------------------cc-------
Q 021871          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR-------  245 (306)
Q Consensus       197 ~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~-~~-----------------------~~-------  245 (306)
                      +..+.......-.|+|||+|..|++.|..+++.|.+|.++.+.+. +.                       +.       
T Consensus        11 ~~~~~~~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d   90 (641)
T 3cp8_A           11 SSGLVPRGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAID   90 (641)
T ss_dssp             ---------CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHH
T ss_pred             cCCccccccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHH
Confidence            344443343445799999999999999999999999999988641 10                       00       


Q ss_pred             ----------------------ccC-HHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEE
Q 021871          246 ----------------------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL  301 (306)
Q Consensus       246 ----------------------~~~-~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~  301 (306)
                                            ..+ ..+...+.+.+++ .|++++.+ .|+.+.. +++.+.+|.+.+|+.+.+|.||+
T Consensus        91 ~~gi~f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~-d~g~V~GV~t~~G~~i~Ad~VVL  168 (641)
T 3cp8_A           91 ATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSA-NSGKFSSVTVRSGRAIQAKAAIL  168 (641)
T ss_dssp             HHEEEEEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEE-ETTEEEEEEETTSCEEEEEEEEE
T ss_pred             hcCCchhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEe-cCCEEEEEEECCCcEEEeCEEEE
Confidence                                  001 1345566777777 49999755 8999876 46677789999999999999999


Q ss_pred             ecCC
Q 021871          302 LPYD  305 (306)
Q Consensus       302 a~g~  305 (306)
                      |||.
T Consensus       169 ATG~  172 (641)
T 3cp8_A          169 ACGT  172 (641)
T ss_dssp             CCTT
T ss_pred             CcCC
Confidence            9994

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.27  E-value=4.7e-06  Score=73.15  Aligned_cols=97  Identities=18%  Similarity=0.239  Sum_probs=71.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-----ccCHHHH-----------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLA-----------------------------  252 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-----~~~~~~~-----------------------------  252 (306)
                      ..+|+|||+|..|+.+|..|++.+.+|+++++.+.....     .+.+...                             
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            457999999999999999999999999999987653110     0111111                             


Q ss_pred             --------------HHHHHHHHH--cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          253 --------------QRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       253 --------------~~~~~~~~~--~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                    ..+.+.+.+  .|++++.+++|++++.+ ++.+ .|++.+|+++.+|.||.|.|.
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vV~AdG~  151 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQD-SETV-QMRFSDGTKAEANWVIGADGG  151 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEEC-SSCE-EEEETTSCEEEESEEEECCCT
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEec-CCEE-EEEECCCCEEECCEEEECCCc
Confidence                          112222222  38999999999999974 4444 588899989999999999985

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.27  E-value=4.3e-07  Score=82.65  Aligned_cols=38  Identities=21%  Similarity=0.318  Sum_probs=34.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcC-CCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g-~~~~~V~vie~~~~~~   90 (306)
                      +.+||+|||||++||+||++|++.| +   +|+|+|+++..+
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~---~V~VlEa~~riG   45 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQ---DCLVLEARDRVG   45 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCC---SEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCC---CEEEEeCCCCCC
Confidence            3579999999999999999999999 7   999999988764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.27  E-value=1.9e-06  Score=77.95  Aligned_cols=99  Identities=16%  Similarity=0.225  Sum_probs=73.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc----CCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH----GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~----g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (306)
                      .++|+|||||+.|+.+|..|.+.    |.   +|+++++.+... .  .     ..         +.       .....+
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~---~V~~v~~~~~~~-~--~-----~l---------~~-------~~~~~~  232 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGT---EVIQLFPEKGNM-G--K-----IL---------PE-------YLSNWT  232 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC---EEEEECSSSSTT-T--T-----TS---------CH-------HHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCC---EEEEEecCcccc-c--c-----cC---------CH-------HHHHHH
Confidence            57899999999999999999874    55   899998764310 0  0     00         00       001345


Q ss_pred             hhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          127 PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       127 ~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ...+++.|+++++++.|.+++.++.  .+.+.+|+.+.+|.+|+|+|..|+.
T Consensus       233 ~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~  284 (493)
T 1m6i_A          233 MEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNV  284 (493)
T ss_dssp             HHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccH
Confidence            5667889999999999999875433  5777888899999999999988763

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.26  E-value=1.3e-05  Score=73.99  Aligned_cols=98  Identities=20%  Similarity=0.257  Sum_probs=77.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC------CCcEEEEecCCccccc------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHLLQR------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~------~~~v~~~~~~~~~~~~------------------------------------  245 (306)
                      -.|+|||+|..|+-+|..|++.      +.+|.++++.+.+...                                    
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4699999999999999999998      8999999876432100                                    


Q ss_pred             --------cc---C--------------HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC------C---
Q 021871          246 --------LF---T--------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G---  291 (306)
Q Consensus       246 --------~~---~--------------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~------G---  291 (306)
                              .+   +              ..+...+.+.+++.||+|+.++.|+++..++++.+.+|.+.+      |   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence                    00   0              145667788888889999999999999875567776787763      3   


Q ss_pred             ------CEEecCEEEEecCC
Q 021871          292 ------STIDADTVILLPYD  305 (306)
Q Consensus       292 ------~~i~~d~vv~a~g~  305 (306)
                            .++.+|.||.|+|.
T Consensus       196 ~~~~~g~~i~Ad~VV~AdG~  215 (584)
T 2gmh_A          196 TTFERGLELHAKVTIFAEGC  215 (584)
T ss_dssp             EEEECCCEEECSEEEECCCT
T ss_pred             cccCCceEEECCEEEEeeCC
Confidence                  58999999999985

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.25  E-value=9.9e-07  Score=78.92  Aligned_cols=57  Identities=23%  Similarity=0.240  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC-CCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ...+.+.+.+.+++.|++++++++|++|...+ ++++.+|.+. |+++.+|.||+|+|.
T Consensus       241 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~~-g~~~~ad~VV~a~~~  298 (453)
T 2bcg_G          241 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK-LGTFKAPLVIADPTY  298 (453)
T ss_dssp             TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEET-TEEEECSCEEECGGG
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEEC-CeEEECCEEEECCCc
Confidence            45788889999999999999999999998732 6777678874 778999999999874

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.24  E-value=1.3e-05  Score=67.70  Aligned_cols=94  Identities=15%  Similarity=0.133  Sum_probs=71.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc-------c------------c-cccCHHHHHHHHHHHHHcCCEEEc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------L------------Q-RLFTPSLAQRYEQLYQQNGVKFVK  268 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~-------~------------~-~~~~~~~~~~~~~~~~~~gv~i~~  268 (306)
                      .|+|||+|+.|+..|..+++.+.+|+++++...-       +            + ....+++.+.+.+.+++.++++..
T Consensus         6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~   85 (314)
T 4a5l_A            6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT   85 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence            5899999999999999999999999999875420       0            0 011256777788888999999887


Q ss_pred             CceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          269 GASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       269 ~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      . .+..+....+..  .+.+.++.++.+|.+|+|||.
T Consensus        86 ~-~v~~~~~~~~~~--~~~~~~~~~~~~~~liiATG~  119 (314)
T 4a5l_A           86 E-TIDHVDFSTQPF--KLFTEEGKEVLTKSVIIATGA  119 (314)
T ss_dssp             C-CEEEEECSSSSE--EEEETTCCEEEEEEEEECCCE
T ss_pred             e-EEEEeecCCCce--EEEECCCeEEEEeEEEEcccc
Confidence            6 466666433333  467788889999999999994

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.24  E-value=6.5e-07  Score=79.57  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +++||+|||||++||++|+.|++.|+   +|+|+|+..
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~---~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDV---DVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTC---EEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCC---eEEEEcCCC
Confidence            45799999999999999999999999   999999976

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.23  E-value=3.1e-06  Score=75.81  Aligned_cols=97  Identities=12%  Similarity=0.083  Sum_probs=71.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC-----CcEEEEecCCcccccc-------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWK-----LDTTIIFPENHLLQRL-------------------------------------  246 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~-----~~v~~~~~~~~~~~~~-------------------------------------  246 (306)
                      .|+|||+|+.|+.+|..|++.+     .+|+++++.+.+....                                     
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~  111 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD  111 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence            6999999999999999999998     8999999887422000                                     


Q ss_pred             -------------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCC-CcE--EEEEeCCCC----EEecCEEEEecCC
Q 021871          247 -------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRV--AAVKLEDGS----TIDADTVILLPYD  305 (306)
Q Consensus       247 -------------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~v--~~v~~~~G~----~i~~d~vv~a~g~  305 (306)
                                   ....+.+.+....++.+++++++++|++++..++ +..  ..|.+.+|+    ++.+|.||+|||.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence                         0123444455555666899999999999986321 221  256776765    8999999999995

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.22  E-value=1.2e-06  Score=76.97  Aligned_cols=38  Identities=13%  Similarity=0.190  Sum_probs=34.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~~~~   90 (306)
                      ..+||+|||||++||++|++|++. |+   +|+|+|+++..+
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~---~v~v~E~~~~~G   44 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDK---RVLVLERRPHIG   44 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCC---CEEEECSSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCC---CEEEEeCCCCCC
Confidence            368999999999999999999999 88   999999987754

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.22  E-value=1.5e-05  Score=72.46  Aligned_cols=97  Identities=14%  Similarity=0.152  Sum_probs=74.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc--------ccc----------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------LQR----------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~--------~~~----------------------------------  245 (306)
                      .+|+|||+|..|+-+|..|++.+.+|+++.+.+..        .+.                                  
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   87 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP   87 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence            47999999999999999999999999999987510        000                                  


Q ss_pred             --------------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEE--eCCCC--EEecCEEEE
Q 021871          246 --------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK--LEDGS--TIDADTVIL  301 (306)
Q Consensus       246 --------------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~--~~~G~--~i~~d~vv~  301 (306)
                                          .....+...+.+.+++.|++++.+++|+++.. +++.+.+|.  ..+|+  ++.+|.||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~-~~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A           88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLF-EGERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEE-ETTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-ECCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence                                00124556677788889999999999999997 456554444  45574  799999999


Q ss_pred             ecCC
Q 021871          302 LPYD  305 (306)
Q Consensus       302 a~g~  305 (306)
                      |+|.
T Consensus       167 AdG~  170 (512)
T 3e1t_A          167 ASGN  170 (512)
T ss_dssp             CCCT
T ss_pred             CCCc
Confidence            9996

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.20  E-value=1.4e-06  Score=76.17  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=34.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ...+||+|||||++||++|++|++.|+   +|+|+|+++..+
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G   65 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQ---RVLIVDRRPHIG   65 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCC---ceEEEeccCCCC
Confidence            346899999999999999999999998   999999987653

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.19  E-value=1.5e-06  Score=78.41  Aligned_cols=39  Identities=18%  Similarity=0.353  Sum_probs=35.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      .+.+||+|||||++||++|+.|++.|+   +|+|+|+.+..+
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~---~v~v~E~~~~~G   47 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGY---KVTVLEARTRPG   47 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCC
Confidence            345799999999999999999999998   999999987754

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.19  E-value=1.2e-06  Score=78.87  Aligned_cols=39  Identities=23%  Similarity=0.204  Sum_probs=33.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      +++||+|||||++||++|++|++.| ++.+|+|+|+++..
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~g-~~~~v~v~E~~~~~   41 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERAF-PDLNITLLEAGERL   41 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHHC-TTSEEEEECSSSSS
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhC-CCCCEEEEECCCCC
Confidence            4589999999999999999999999 12299999997665

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.18  E-value=8.9e-07  Score=79.12  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=34.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ..+||+|||||++||+||++|++.|+   +|+|+|+++..+
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~G   41 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGL---SVAVIEARDRVG   41 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEECCCCCC
Confidence            34799999999999999999999998   899999987654

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.15  E-value=1.4e-06  Score=78.31  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=33.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ...+||+|||||++||++|+.|++.|+   +|+|+|+++..+
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~---~v~v~E~~~~~G   52 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGT---DAVLLESSARLG   52 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTC---CEEEECSSSSSB
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCCCC
Confidence            346899999999999999999999998   999999987653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.15  E-value=2.4e-06  Score=77.11  Aligned_cols=96  Identities=13%  Similarity=0.126  Sum_probs=70.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+++|||||+.|+.+|..|++.|.   +|+++++....  .  ..      +                .+....+.+.+
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~l--~--~~------d----------------~~~~~~l~~~l  237 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGY---EPTVMVRSIVL--R--GF------D----------------QQMAELVAASM  237 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSCSS--T--TS------C----------------HHHHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC---EEEEEeCCCCC--c--cc------C----------------HHHHHHHHHHH
Confidence            4689999999999999999999997   99999874221  0  00      0                00013456677


Q ss_pred             hhcCeEEEeCCcEEEEeCCC---CEEEcCCCc-----EEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGK-----LLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~---~~v~~~~g~-----~~~~~~lila~G~~~~  175 (306)
                      ++.|+++++++.+.++....   ..+.+.++.     .+.+|.+++|+|..|+
T Consensus       238 ~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~  290 (483)
T 3dgh_A          238 EERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGL  290 (483)
T ss_dssp             HHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred             HhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccC
Confidence            88999999999999987532   235554432     7899999999998765

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.15  E-value=1.5e-05  Score=70.20  Aligned_cols=95  Identities=19%  Similarity=0.233  Sum_probs=73.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------  244 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~------------------------------------------  244 (306)
                      .-+|+|||+|..|+-+|..|++.+.+|+++++.+...+                                          
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~g  102 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG  102 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCCC
Confidence            46799999999999999999999999999998764210                                          


Q ss_pred             c----c----------------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          245 R----L----------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       245 ~----~----------------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      .    .                ....+...+.+.+.+  ++++.+++|++++.+ ++.+ .|++.+|+++.+|.||.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~a~~vV~AdG  178 (407)
T 3rp8_A          103 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEED-ADGV-TVWFTDGSSASGDLLIAADG  178 (407)
T ss_dssp             CEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCC
T ss_pred             CEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEec-CCcE-EEEEcCCCEEeeCEEEECCC
Confidence            0    0                001234445555544  889999999999974 4444 58899999999999999998


Q ss_pred             C
Q 021871          305 D  305 (306)
Q Consensus       305 ~  305 (306)
                      .
T Consensus       179 ~  179 (407)
T 3rp8_A          179 S  179 (407)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.14  E-value=1.2e-05  Score=73.91  Aligned_cols=98  Identities=15%  Similarity=0.172  Sum_probs=74.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-------------------------------------cc-----
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------QR-----  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-------------------------------------~~-----  245 (306)
                      -.|+|||+|..|+-+|..|++.+.+|+++++.+...                                     ..     
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            469999999999999999999999999998754311                                     00     


Q ss_pred             ---------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-CEEecCEEEEecCC
Q 021871          246 ---------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTVILLPYD  305 (306)
Q Consensus       246 ---------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~i~~d~vv~a~g~  305 (306)
                                     .....+...+.+.+++.|++|+.+++|++++.++++..+.+...+| +++.+|.||.|.|.
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~  205 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGG  205 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCS
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCC
Confidence                           0013456677788888899999999999999755554323333778 68999999999985

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.13  E-value=1.8e-05  Score=72.35  Aligned_cols=97  Identities=16%  Similarity=0.157  Sum_probs=74.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc--------------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------------------------  243 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~--------------------------------------------  243 (306)
                      ..|+|||+|..|+-+|..|++.+.+|+++++.+...                                            
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   85 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE   85 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence            469999999999999999999999999998875320                                            


Q ss_pred             -------c----c------------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCC---cEEEEEeCCC
Q 021871          244 -------Q----R------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG---RVAAVKLEDG  291 (306)
Q Consensus       244 -------~----~------------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~---~v~~v~~~~G  291 (306)
                             .    .                  .....+...+.+.+++.|++++.+++|++++.++++   .+ .+++.++
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v-~v~~~~~  164 (535)
T 3ihg_A           86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGV-TARLAGP  164 (535)
T ss_dssp             SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEE-EEEEEET
T ss_pred             ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccE-EEEEEcC
Confidence                   0    0                  001245566778888889999999999999975441   33 4666655


Q ss_pred             ---CEEecCEEEEecCC
Q 021871          292 ---STIDADTVILLPYD  305 (306)
Q Consensus       292 ---~~i~~d~vv~a~g~  305 (306)
                         .++.+|.||.|.|.
T Consensus       165 ~~~~~i~a~~vV~AdG~  181 (535)
T 3ihg_A          165 DGEYDLRAGYLVGADGN  181 (535)
T ss_dssp             TEEEEEEEEEEEECCCT
T ss_pred             CCeEEEEeCEEEECCCC
Confidence               67999999999985

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.13  E-value=1e-05  Score=68.25  Aligned_cols=94  Identities=16%  Similarity=0.139  Sum_probs=70.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEE-EecCCccc------------cc----ccCHHHHHHHHHHHHHcCCEEEcC
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTI-IFPENHLL------------QR----LFTPSLAQRYEQLYQQNGVKFVKG  269 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~-~~~~~~~~------------~~----~~~~~~~~~~~~~~~~~gv~i~~~  269 (306)
                      ..+|+|||+|..|+..|..|++.+.+|++ +.+. .+.            +.    .....+...+.+.+++.|++++.+
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV   82 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence            35799999999999999999999999999 8873 211            11    012467778888888899999998


Q ss_pred             ceEEEEEeCCC-CcEEEE-EeCCCCEEecCEEEEecCC
Q 021871          270 ASIKNLEAGSD-GRVAAV-KLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       270 ~~v~~i~~~~~-~~v~~v-~~~~G~~i~~d~vv~a~g~  305 (306)
                       +|.++ ..++ +.+ .+ ...++ .+.+|.+|+|||.
T Consensus        83 -~v~~i-~~~~~~~~-~v~~~~~~-~~~~d~lvlAtG~  116 (315)
T 3r9u_A           83 -GVEQI-LKNSDGSF-TIKLEGGK-TELAKAVIVCTGS  116 (315)
T ss_dssp             -CEEEE-EECTTSCE-EEEETTSC-EEEEEEEEECCCE
T ss_pred             -EEEEE-ecCCCCcE-EEEEecCC-EEEeCEEEEeeCC
Confidence             88888 4331 343 33 22334 8999999999984

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.09  E-value=5.8e-06  Score=74.65  Aligned_cols=97  Identities=12%  Similarity=0.126  Sum_probs=70.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+++|||||..|+.+|..|++.|.   +|+++++....    +.+      +                .+....+...+
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~l----~~~------d----------------~~~~~~l~~~l  235 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGL---DTTVMMRSIPL----RGF------D----------------QQMSSLVTEHM  235 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSS----TTS------C----------------HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---ceEEEEcCccc----ccC------C----------------HHHHHHHHHHH
Confidence            4689999999999999999999997   99999875321    000      0                00023456678


Q ss_pred             hhcCeEEEeCCcEEEEeCC-CC--EEEcCC---Cc--EEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIE-KQ--TLITNS---GK--LLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~-~~--~v~~~~---g~--~~~~~~lila~G~~~~~  176 (306)
                      ++.++++++++.+.++... +.  .+.+.+   ++  .+.+|.+++|+|..|+.
T Consensus       236 ~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~  289 (488)
T 3dgz_A          236 ESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPET  289 (488)
T ss_dssp             HHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESC
T ss_pred             HHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCccc
Confidence            8899999999899888652 22  344433   44  47899999999977653

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.09  E-value=2.5e-06  Score=77.30  Aligned_cols=38  Identities=21%  Similarity=0.347  Sum_probs=34.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      +.+||+|||||++||++|+.|++.|+   +|+|+|+++..+
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~G   49 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGL---NVTVFEAEGKAG   49 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSC---EEEEECSSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEEeCCCCC
Confidence            45899999999999999999999998   999999987764

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.09  E-value=1.8e-06  Score=74.38  Aligned_cols=36  Identities=14%  Similarity=0.073  Sum_probs=30.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC---CCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~---~~~~V~vie~~~   87 (306)
                      +||+|||||++|+++|++|+++|.   +..+|+|+|+..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            489999999999999999999981   112999999985

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.08  E-value=3.5e-06  Score=75.98  Aligned_cols=39  Identities=21%  Similarity=0.158  Sum_probs=34.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcC-CCCCcEEEeccCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAP   90 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g-~~~~~V~vie~~~~~~   90 (306)
                      ++.+||+|||||++||++|++|++.| .   +|+|+|+++..+
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~---~v~v~E~~~~~G   46 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYK---NWHLYECNDTPG   46 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCC---SEEEEESSSSSS
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCC---CEEEEeCCCCCC
Confidence            34689999999999999999999998 5   899999987654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.08  E-value=4.7e-06  Score=75.44  Aligned_cols=99  Identities=21%  Similarity=0.269  Sum_probs=71.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC-----------CCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGM-----------ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS  120 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~-----------~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (306)
                      ..++|||||+.|+.+|..|++.+.           .+.+|+++|..+...            +         .+.    .
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il------------~---------~~~----~  272 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL------------N---------MFE----K  272 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS------------T---------TSC----H
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc------------c---------CCC----H
Confidence            469999999999999999886531           123799999876531            0         000    0


Q ss_pred             CCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEE--EcCCCc----EEecCcEEEeeCCCCc
Q 021871          121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTL--ITNSGK----LLKYGSLIVATGCTAS  175 (306)
Q Consensus       121 ~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v--~~~~g~----~~~~~~lila~G~~~~  175 (306)
                      .......+.+++.||++++++.|.+++.+...+  ...+|+    .+.+|.+|.|+|..++
T Consensus       273 ~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~  333 (502)
T 4g6h_A          273 KLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR  333 (502)
T ss_dssp             HHHHHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC
T ss_pred             HHHHHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCC
Confidence            012456677889999999999999998765433  334553    6899999999997764

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.07  E-value=3.2e-06  Score=73.93  Aligned_cols=37  Identities=22%  Similarity=0.444  Sum_probs=33.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      .+||+|||||++|+++|+.|++.|+   +|+|+|+++..+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~---~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGH---QVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---cEEEEEecCCcC
Confidence            4799999999999999999999998   999999987653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.05  E-value=6.4e-06  Score=73.94  Aligned_cols=96  Identities=19%  Similarity=0.211  Sum_probs=68.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++++|||||+.|+.+|..|.+.|.   +|+++++.+...-.       ++ +                    ..+...
T Consensus       171 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~~-------~~-d--------------------~~~~~~  219 (466)
T 3l8k_A          171 LPQDMVIIGAGYIGLEIASIFRLMGV---QTHIIEMLDRALIT-------LE-D--------------------QDIVNT  219 (466)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCTT-------SC-C--------------------HHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEEeCCcCCCC-------CC-C--------------------HHHHHH
Confidence            35789999999999999999999997   99999987543100       00 0                    111222


Q ss_pred             Hh-hcCeEEEeCCcEEEEeCCC-C--EEEcC--CCc--EEecCcEEEeeCCCCcc
Q 021871          130 YK-EKGIEMIYQDPVTSIDIEK-Q--TLITN--SGK--LLKYGSLIVATGCTASR  176 (306)
Q Consensus       130 ~~-~~~v~~~~~~~v~~v~~~~-~--~v~~~--~g~--~~~~~~lila~G~~~~~  176 (306)
                      +. ...++++.++.+.++.... .  .+.++  +|+  .+.+|.+++|+|..|+.
T Consensus       220 l~~~l~v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~  274 (466)
T 3l8k_A          220 LLSILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVI  274 (466)
T ss_dssp             HHHHHCCCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECC
T ss_pred             HHhcCEEEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCccc
Confidence            22 2248899999999887643 2  45565  555  79999999999988764

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.05  E-value=3.2e-06  Score=73.76  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=32.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA   89 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~~~   89 (306)
                      +||+|||||++||++|..|++.  |+   +|+|+|+.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~---~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLW---AIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTS---EEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCC---CEEEEECCCCC
Confidence            4899999999999999999999  88   99999998654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.03  E-value=2.7e-05  Score=68.30  Aligned_cols=96  Identities=14%  Similarity=0.106  Sum_probs=71.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------ccCHHH-------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSL-------------------------------  251 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------~~~~~~-------------------------------  251 (306)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+...      .+.+..                               
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   82 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN   82 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence            7999999999999999999999999999886543110      000000                               


Q ss_pred             ----------------------------HHHHHHHHH-HcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEe
Q 021871          252 ----------------------------AQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILL  302 (306)
Q Consensus       252 ----------------------------~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a  302 (306)
                                                  ...+.+.|. ..+.+|++++++++++..+++.+ .|.+++|+++++|.||-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVgA  161 (412)
T 4hb9_A           83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVGA  161 (412)
T ss_dssp             TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEEC
T ss_pred             CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEEC
Confidence                                        112334333 23557899999999987667766 699999999999999999


Q ss_pred             cCC
Q 021871          303 PYD  305 (306)
Q Consensus       303 ~g~  305 (306)
                      -|.
T Consensus       162 DG~  164 (412)
T 4hb9_A          162 DGS  164 (412)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            874

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.03  E-value=3.3e-06  Score=73.36  Aligned_cols=36  Identities=17%  Similarity=0.321  Sum_probs=33.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      +||+|||||++||++|++|++.|+   +|+|+|+++..+
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~---~v~v~E~~~~~G   37 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNK---KVLVIEKRNHIG   37 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTC---CEEEECSSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC---cEEEEecCCCCC
Confidence            599999999999999999999998   999999987653

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.03  E-value=4.3e-06  Score=75.67  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=34.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ..++||+|||||++||++|+.|++.|+   +|+|+|+.+..+
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~---~v~vlE~~~~~g   69 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGH---QVTVLEASERPG   69 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTC---EEEEECSSSSSB
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEECCCCCC
Confidence            346899999999999999999999998   999999987653

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.03  E-value=2.8e-05  Score=68.16  Aligned_cols=97  Identities=20%  Similarity=0.280  Sum_probs=69.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc----cc---C---HHH-------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----LF---T---PSL-------------------------  251 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~----~~---~---~~~-------------------------  251 (306)
                      ..+|+|||+|..|+.+|..|++.+.+|+++++.+....+    ..   +   ..+                         
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~  105 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK  105 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence            458999999999999999999999999999987643110    00   0   000                         


Q ss_pred             ---------------------HHHHHHHHHHc--CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          252 ---------------------AQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       252 ---------------------~~~~~~~~~~~--gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                           ...+.+.|.+.  +++++.+++|++++.++ +.+ .|++.+|+++.+|.||.|.|.
T Consensus       106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vV~AdG~  180 (398)
T 2xdo_A          106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGK-KKW-TLTFENKPSETADLVILANGG  180 (398)
T ss_dssp             SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECS-SSE-EEEETTSCCEEESEEEECSCT
T ss_pred             CCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECC-CEE-EEEECCCcEEecCEEEECCCc
Confidence                                 01122222221  36789999999999744 444 588899989999999999985

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.03  E-value=4.4e-05  Score=66.45  Aligned_cols=96  Identities=22%  Similarity=0.263  Sum_probs=73.0

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-------------------------------------------  245 (306)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                           
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII   85 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence            4899999999999999999999999999986543100                                           


Q ss_pred             ------------cc-CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-CC--CEEecCEEEEecCC
Q 021871          246 ------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTVILLPYD  305 (306)
Q Consensus       246 ------------~~-~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-~G--~~i~~d~vv~a~g~  305 (306)
                                  .. ...+...+.+.+.+.|++++.+++++.+.. +++.+..+... +|  .++.+|.||-|.|.
T Consensus        86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~-~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~  160 (397)
T 3oz2_A           86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIK-ENGKVAGAKIRHNNEIVDVRAKMVIAADGF  160 (397)
T ss_dssp             EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECCCT
T ss_pred             ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeee-ccceeeeeeecccccceEEEEeEEEeCCcc
Confidence                        00 124556677888889999999999999886 45655555443 33  25899999999885

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.01  E-value=8.5e-06  Score=76.74  Aligned_cols=98  Identities=13%  Similarity=0.164  Sum_probs=73.3

Q ss_pred             CCcEEEEc--CChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           51 NREFVIVG--GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        51 ~~~vvIIG--gG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      .++|+|||  +|..|+.+|..|.+.|.   +|+++++.+...-        .....                .....+..
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~---~Vtlv~~~~~l~~--------~~~~~----------------~~~~~l~~  575 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGY---EVSIVTPGAQVSS--------WTNNT----------------FEVNRIQR  575 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTC---EEEEEESSSSTTG--------GGGGG----------------TCHHHHHH
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCC---eeEEEeccccccc--------ccccc----------------hhHHHHHH
Confidence            45799999  99999999999999997   9999998755310        00000                00134566


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEc---CCCcEEecCcEEEeeCCCCc
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLIT---NSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~---~~g~~~~~~~lila~G~~~~  175 (306)
                      .+++.|++++.+++|.+++.+...+..   .++..+.+|.||+|+|..+.
T Consensus       576 ~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          576 RLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR  625 (690)
T ss_dssp             HHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred             HHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence            788899999999999999876555542   24457999999999998765

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.00  E-value=8.1e-05  Score=62.84  Aligned_cols=93  Identities=18%  Similarity=0.188  Sum_probs=69.8

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc---cc--------c---cccCHHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------Q---RLFTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~---~~--------~---~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      .|+|||+|+.|+..|..+++.+.+|+++.+...   +.        +   ....+++.....+...+.++.+..+..+..
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            589999999999999999999999999987531   11        1   111346666777778888888888877766


Q ss_pred             EEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          275 LEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ... ...   .+...+++++.+|.+|+|||.
T Consensus        88 ~~~-~~~---~~~~~~~~~~~~d~liiAtGs  114 (312)
T 4gcm_A           88 EDK-GEY---KVINFGNKELTAKAVIIATGA  114 (312)
T ss_dssp             EEC-SSC---EEEECSSCEEEEEEEEECCCE
T ss_pred             eee-ecc---eeeccCCeEEEeceeEEcccC
Confidence            663 233   244566789999999999994

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.00  E-value=7.6e-05  Score=67.47  Aligned_cols=97  Identities=18%  Similarity=0.228  Sum_probs=75.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc----------------------c-------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R-------------------  245 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~----------------------~-------------------  245 (306)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+....                      .                   
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~   91 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDF   91 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceeccc
Confidence            45799999999999999999999999999987643210                      0                   


Q ss_pred             ------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC---EEecCEEEEecCC
Q 021871          246 ------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTVILLPYD  305 (306)
Q Consensus       246 ------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~---~i~~d~vv~a~g~  305 (306)
                                  .....+...+.+.+++.|++++.+++|++++.+++ .+ .|++.+|+   ++.+|.||.|.|.
T Consensus        92 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~~a~~vVgADG~  164 (499)
T 2qa2_A           92 GVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGD-HV-VVEVEGPDGPRSLTTRYVVGCDGG  164 (499)
T ss_dssp             GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSS-CE-EEEEECSSCEEEEEEEEEEECCCT
T ss_pred             ccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC-EE-EEEEEcCCCcEEEEeCEEEEccCc
Confidence                        00134566677778888999999999999997544 44 47776665   7999999999985

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.00  E-value=0.00011  Score=67.14  Aligned_cols=52  Identities=17%  Similarity=0.235  Sum_probs=43.2

Q ss_pred             HHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       253 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ..+.+.+++.|++++.+ +|+++...+++.+..|.+.+|+++.+|.||.|+|.
T Consensus       169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~  220 (538)
T 2aqj_A          169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGM  220 (538)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGG
T ss_pred             HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCC
Confidence            45566677789999999 89999875566666799999888999999999985

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.99  E-value=4.4e-06  Score=76.17  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHH------------cCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVE------------HGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~------------~g~~~~~V~vie~~~~   88 (306)
                      ..+||+|||||++|+++|..|++            .|+   +|+|+|+.+.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~---~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKL---NITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSC---EEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCC---eEEEEeCCCC
Confidence            45899999999999999999999            787   9999998653

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.99  E-value=1.8e-05  Score=69.57  Aligned_cols=52  Identities=19%  Similarity=0.150  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHcCCEEEcCceEE---------EEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          251 LAQRYEQLYQQNGVKFVKGASIK---------NLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       251 ~~~~~~~~~~~~gv~i~~~~~v~---------~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +...+.+.+++.|++++.+++|+         ++.. +++.+ .|++.+| .+.+|.||+|+|.
T Consensus       174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~-~~~~v-~v~~~~g-~i~a~~VV~A~G~  234 (405)
T 3c4n_A          174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTV-TNTHQ-IVVHETR-QIRAGVIIVAAGA  234 (405)
T ss_dssp             HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGG
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEe-eCCeE-EEEECCc-EEECCEEEECCCc
Confidence            55667777888899999999999         8875 35555 6877777 8999999999984

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.97  E-value=1.5e-05  Score=72.46  Aligned_cols=97  Identities=16%  Similarity=0.247  Sum_probs=67.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+++|||||..|+.+|..|++.|.   +|+++++....  .  ..        +              .+....+.+.+
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~l--~--~~--------d--------------~~~~~~~~~~l  260 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILL--R--GF--------D--------------QDMANKIGEHM  260 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSS--T--TS--------C--------------HHHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEeccccc--c--cC--------C--------------HHHHHHHHHHH
Confidence            4679999999999999999999997   99999974211  0  00        0              00023455667


Q ss_pred             hhcCeEEEeCCcEEEEeCCC----C--EEE--cCCC-c--EEecCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDIEK----Q--TLI--TNSG-K--LLKYGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~----~--~v~--~~~g-~--~~~~~~lila~G~~~~~  176 (306)
                      ++.|++++.++.+.++....    .  .+.  ..++ +  .+.+|.+++|+|..|+.
T Consensus       261 ~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~  317 (519)
T 3qfa_A          261 EEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT  317 (519)
T ss_dssp             HHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESC
T ss_pred             HHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccC
Confidence            88999999987776665321    2  222  2344 2  56899999999987753

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.95  E-value=1.8e-05  Score=73.27  Aligned_cols=97  Identities=11%  Similarity=0.189  Sum_probs=67.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+|+|||||..|+-+|..|++.|.   +|+++++. .. ..  ....                 .     ....+.+.+
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~-~~-l~--~~d~-----------------~-----~~~~~~~~l  336 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGG---DVTVMVRS-IL-LR--GFDQ-----------------Q-----MAEKVGDYM  336 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESS-CS-ST--TSCH-----------------H-----HHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---EEEEEECC-cC-cC--cCCH-----------------H-----HHHHHHHHH
Confidence            4689999999999999999999997   89999976 21 00  0000                 0     013345667


Q ss_pred             hhcCeEEEeCCcEEEEeC-------C--CCE--EE--cCCCcEEe--cCcEEEeeCCCCcc
Q 021871          131 KEKGIEMIYQDPVTSIDI-------E--KQT--LI--TNSGKLLK--YGSLIVATGCTASR  176 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~-------~--~~~--v~--~~~g~~~~--~~~lila~G~~~~~  176 (306)
                      ++.|+++++++.+.++..       .  ...  +.  ..+|+.+.  +|.+++|+|..|+.
T Consensus       337 ~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~  397 (598)
T 2x8g_A          337 ENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQL  397 (598)
T ss_dssp             HHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECG
T ss_pred             HhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCcccc
Confidence            788999999887777632       1  122  22  34665554  99999999987653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.95  E-value=9.2e-06  Score=72.57  Aligned_cols=89  Identities=15%  Similarity=0.141  Sum_probs=68.6

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-------ccc-cCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QRL-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      ..++|+|||+|+.|+..|..|++.+.+|+++.+.+.+.       +.. .+..+.+...+.+++.||+++.++.|.    
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~----  196 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG----  196 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec----
Confidence            35689999999999999999999999999999987652       211 245677777788899999999998763    


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                       .     .+.++++ .+.+|.||+|||.
T Consensus       197 -~-----~v~~~~~-~~~~d~vvlAtG~  217 (456)
T 2vdc_G          197 -R-----DASLPEL-RRKHVAVLVATGV  217 (456)
T ss_dssp             -T-----TBCHHHH-HSSCSEEEECCCC
T ss_pred             -c-----EEEhhHh-HhhCCEEEEecCC
Confidence             0     1233333 3679999999995

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.94  E-value=9.1e-05  Score=66.99  Aligned_cols=98  Identities=18%  Similarity=0.184  Sum_probs=74.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc----------------------cc-----------------
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------RL-----------------  246 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~----------------------~~-----------------  246 (306)
                      ....|+|||+|+.|+-+|..|++.|.+|+++++.+....                      ..                 
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   89 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPID   89 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecc
Confidence            345799999999999999999999999999987643210                      00                 


Q ss_pred             -------------c-CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC---EEecCEEEEecCC
Q 021871          247 -------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTVILLPYD  305 (306)
Q Consensus       247 -------------~-~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~---~i~~d~vv~a~g~  305 (306)
                                   . ...+...+.+.+++.|++++.+++|++++.+++ .+ .|++.+|+   ++.+|.||.|.|.
T Consensus        90 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~~a~~vVgADG~  163 (500)
T 2qa1_A           90 FGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA-GV-TVEVRGPEGKHTLRAAYLVGCDGG  163 (500)
T ss_dssp             GGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETT-EE-EEEEEETTEEEEEEESEEEECCCT
T ss_pred             cccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCC-eE-EEEEEcCCCCEEEEeCEEEECCCc
Confidence                         0 124556677778888999999999999987444 44 46666664   7999999999985

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.93  E-value=1e-05  Score=71.85  Aligned_cols=56  Identities=20%  Similarity=0.328  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ...+.+.+.+.+++.|++++++++|++|.. +++++.+|.+ +|+++.+|.||+|+|.
T Consensus       233 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~v~~v~~-~g~~~~ad~VV~a~~~  288 (433)
T 1d5t_A          233 LGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKS-EGEVARCKQLICDPSY  288 (433)
T ss_dssp             TTHHHHHHHHHHHHHTCCCBCSCCCCEEEE-ETTEEEEEEE-TTEEEECSEEEECGGG
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCEEEEEEE-eCCEEEEEEE-CCeEEECCEEEECCCC
Confidence            457888889999999999999999999987 4666666664 6778999999999874

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.93  E-value=9.7e-06  Score=69.91  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=32.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++||+|||||++|+.+|+.|++.|.   +|+|+|+++.
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~---~V~liE~~~~   35 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGV---PVRLFEMRPK   35 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC---CEEEECCTTT
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence            3799999999999999999999998   9999998764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.91  E-value=6.5e-05  Score=66.09  Aligned_cols=95  Identities=17%  Similarity=0.230  Sum_probs=71.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCccccc-----------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR-----------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~-v~~~~~~~~~~~~-----------------------------------------  245 (306)
                      .+|+|||+|..|+-+|..|++.+.+ |+++++.+.+.+.                                         
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g~   84 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA   84 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCCC
Confidence            5799999999999999999999999 9999987542100                                         


Q ss_pred             -------------------ccCHHHHHHHHHHHHHc-C-CEEEcCceEEEEEeCCCCcEEEEEeCC---C--CEEecCEE
Q 021871          246 -------------------LFTPSLAQRYEQLYQQN-G-VKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTV  299 (306)
Q Consensus       246 -------------------~~~~~~~~~~~~~~~~~-g-v~i~~~~~v~~i~~~~~~~v~~v~~~~---G--~~i~~d~v  299 (306)
                                         .....+...+.+.+.+. | ++++.+++|++++. +++.  .|.+.+   |  .++.+|.|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v--~v~~~~~~~g~~~~~~ad~v  161 (410)
T 3c96_A           85 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGR--VLIGARDGHGKPQALGADVL  161 (410)
T ss_dssp             EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTE--EEEEEEETTSCEEEEEESEE
T ss_pred             EEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCcc--EEEEecCCCCCceEEecCEE
Confidence                               00013445566666653 5 68999999999987 5553  355544   6  47999999


Q ss_pred             EEecCC
Q 021871          300 ILLPYD  305 (306)
Q Consensus       300 v~a~g~  305 (306)
                      |.|.|.
T Consensus       162 V~AdG~  167 (410)
T 3c96_A          162 VGADGI  167 (410)
T ss_dssp             EECCCT
T ss_pred             EECCCc
Confidence            999985

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.90  E-value=2e-05  Score=71.20  Aligned_cols=96  Identities=16%  Similarity=0.145  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc------------cCHHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------FTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      ..+|+|||+|..|+..|..|++. .+|+++.+.+.+....            ...++...+.+.+ +.|++++.++.|.+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~  185 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALG  185 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECC
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEE
Confidence            35799999999999999999999 9999999987652211            0122333333333 56999999999999


Q ss_pred             EEeCCCCcEEEEEeCCCC--EEecCEEEEecCC
Q 021871          275 LEAGSDGRVAAVKLEDGS--TIDADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~~~~G~--~i~~d~vv~a~g~  305 (306)
                      +.. +++.+......+++  .+.+|.+|+|||.
T Consensus       186 i~~-~~~~~~~~~~~~~~~~~~~~d~lvlAtGa  217 (493)
T 1y56_A          186 VFD-KGEYFLVPVVRGDKLIEILAKRVVLATGA  217 (493)
T ss_dssp             CEE-CSSSEEEEEEETTEEEEEEESCEEECCCE
T ss_pred             EEc-CCcEEEEEEecCCeEEEEECCEEEECCCC
Confidence            886 34443223334554  6899999999984

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.84  E-value=9.2e-06  Score=75.79  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=32.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+||+|||||.+||++|++|++.|.   +|+|+||...
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G~---~V~vlEK~~~   39 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKGL---STIVLSLIPV   39 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCG
T ss_pred             cccEEEECchHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence            4799999999999999999999998   9999999764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.82  E-value=0.00013  Score=71.08  Aligned_cols=97  Identities=15%  Similarity=0.125  Sum_probs=69.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccccc-----------CHHHHHHHHHHHHHc-CCEEEcCceEEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF-----------TPSLAQRYEQLYQQN-GVKFVKGASIKN  274 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-gv~i~~~~~v~~  274 (306)
                      ..+|+|||+|+.|+..|..+++.+.+|+++.+.+.+.....           ..++...+.+.+.+. +++++.++.|..
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~  207 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG  207 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence            45799999999999999999999999999998765431111           123445555666664 999999999998


Q ss_pred             EEeCCCCcEEEEEe---------------CCCCEEecCEEEEecCC
Q 021871          275 LEAGSDGRVAAVKL---------------EDGSTIDADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~~---------------~~G~~i~~d~vv~a~g~  305 (306)
                      +..  ++.+..+..               .++..+.+|.+|+|||.
T Consensus       208 i~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs  251 (965)
T 2gag_A          208 SYD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGA  251 (965)
T ss_dssp             EET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCE
T ss_pred             eec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCC
Confidence            873  333222221               11236899999999994

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.78  E-value=0.00033  Score=63.73  Aligned_cols=52  Identities=13%  Similarity=0.188  Sum_probs=42.2

Q ss_pred             HHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          253 QRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       253 ~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ..+.+.+++ .|++++.+ .|++++.++++.+..|.+.+|+++.+|.||.|+|.
T Consensus       179 ~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~  231 (526)
T 2pyx_A          179 QLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGA  231 (526)
T ss_dssp             HHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGG
T ss_pred             HHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCc
Confidence            345566667 89999999 59999875567666788888878999999999985

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.77  E-value=3.9e-05  Score=72.00  Aligned_cols=48  Identities=17%  Similarity=0.302  Sum_probs=37.5

Q ss_pred             hhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeCCCCc
Q 021871          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTAS  175 (306)
Q Consensus       127 ~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G~~~~  175 (306)
                      ...+++.|++++.++++.+++.+.-.+. .+|  ..+.+|.+|+|+|..++
T Consensus       580 ~~~l~~~GV~v~~~~~v~~i~~~~v~~~-~~G~~~~i~~D~Vi~a~G~~p~  629 (671)
T 1ps9_A          580 RTTLLSRGVKMIPGVSYQKIDDDGLHVV-INGETQVLAVDNVVICAGQEPN  629 (671)
T ss_dssp             HHHHHHTTCEEECSCEEEEEETTEEEEE-ETTEEEEECCSEEEECCCEEEC
T ss_pred             HHHHHhcCCEEEeCcEEEEEeCCeEEEe-cCCeEEEEeCCEEEECCCcccc
Confidence            4567888999999999999885432332 466  57999999999998865

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.76  E-value=0.00024  Score=64.29  Aligned_cols=53  Identities=11%  Similarity=0.120  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       251 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      +...+.+.+++.|++++.+++|+++..+ + .+.+|++   .+|+  .+.+|.||.|+|.
T Consensus       151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~-~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~  208 (501)
T 2qcu_A          151 LVLANAQMVVRKGGEVLTRTRATSARRE-N-GLWIVEAEDIDTGKKYSWQARGLVNATGP  208 (501)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEE-T-TEEEEEEEETTTCCEEEEEESCEEECCGG
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEe-C-CEEEEEEEECCCCCEEEEECCEEEECCCh
Confidence            4556777788899999999999999863 3 3446777   3675  7999999999984

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.76  E-value=2.6e-05  Score=73.05  Aligned_cols=38  Identities=21%  Similarity=0.389  Sum_probs=34.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ...+||+|||||++||++|+.|.+.|+   +|+|+|+.+..
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~---~v~~~e~~~~~  142 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRV  142 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC---EEEEECSSSSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC---eEEEEecCCCC
Confidence            446899999999999999999999998   99999998765

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.75  E-value=2.1e-05  Score=73.36  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=32.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc------CCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH------GMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~------g~~~~~V~vie~~~~   88 (306)
                      .+||+|||||+|||+||+.|++.      |.   +|+|+||...
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~---~V~vleK~~~   62 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEA---KILLVDKASL   62 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTC---CEEEECSSCT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCC---cEEEEEecCC
Confidence            48999999999999999999998      87   9999999754

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.74  E-value=3.3e-05  Score=73.96  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=35.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ...++|+|||||++||++|++|.++|+   +|+|+|+.+..+
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~---~v~v~E~~~~~G  314 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRVG  314 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCcCC
Confidence            346799999999999999999999998   999999987653

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.73  E-value=0.00018  Score=64.60  Aligned_cols=95  Identities=17%  Similarity=0.231  Sum_probs=69.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc-------------c------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------R------------------------------  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~-------------~------------------------------  245 (306)
                      .|+|||+|..|+-.|..+++.+.+|+++.+...-..             .                              
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~   80 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE   80 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence            378999999999999999999999999987610000             0                              


Q ss_pred             -----------------------------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-
Q 021871          246 -----------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-  289 (306)
Q Consensus       246 -----------------------------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-  289 (306)
                                                         .....+...+.+.+++.|++++.+++| ++.. +++.+.++... 
T Consensus        81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~-~~~~v~Gv~v~~  158 (472)
T 2e5v_A           81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRV-KDGKVTGFVTEK  158 (472)
T ss_dssp             HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEE-ETTEEEEEEETT
T ss_pred             HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEE-eCCEEEEEEEEe
Confidence                                               000133455666667789999999999 9875 45666666653 


Q ss_pred             CCCEEecCEEEEecCC
Q 021871          290 DGSTIDADTVILLPYD  305 (306)
Q Consensus       290 ~G~~i~~d~vv~a~g~  305 (306)
                      ++..+.+|.||+|||.
T Consensus       159 ~~g~~~a~~VVlAtGg  174 (472)
T 2e5v_A          159 RGLVEDVDKLVLATGG  174 (472)
T ss_dssp             TEEECCCSEEEECCCC
T ss_pred             CCCeEEeeeEEECCCC
Confidence            2236789999999985

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.70  E-value=2.7e-05  Score=72.61  Aligned_cols=35  Identities=29%  Similarity=0.481  Sum_probs=31.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHH---H-cCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFV---E-HGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~---~-~g~~~~~V~vie~~~~   88 (306)
                      .+||+|||||++||++|+.|+   + .|.   +|+|+||...
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~---~V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGL---KVTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTC---CEEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCC---eEEEEeCcCC
Confidence            479999999999999999999   5 787   9999999864

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.67  E-value=3.3e-05  Score=70.69  Aligned_cols=37  Identities=22%  Similarity=0.399  Sum_probs=33.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...+|++|||+|++|+.+|.+|++.|+   +|+|+|+...
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~---~VlvlE~g~~   41 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGK---KVLLLERGGP   41 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCC---eEEEEeCCCC
Confidence            346899999999999999999999998   9999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.67  E-value=3.6e-05  Score=72.88  Aligned_cols=97  Identities=20%  Similarity=0.231  Sum_probs=69.9

Q ss_pred             CCcEEEEc--CChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           51 NREFVIVG--GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        51 ~~~vvIIG--gG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      .++|+|||  ||..|+-+|..|++.|.   +|+++++.+ .. .      ....+..                 ...+.+
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~---~Vtlv~~~~-l~-~------~~~~~~~-----------------~~~~~~  579 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGH---EVTIVSGVH-LA-N------YMHFTLE-----------------YPNMMR  579 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTC---EEEEEESSC-TT-H------HHHHTTC-----------------HHHHHH
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCC---EEEEEeccc-cc-c------ccccccc-----------------HHHHHH
Confidence            46899999  99999999999999997   999999876 21 0      0000000                 123456


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCEEEc--CCC-cE------------------EecCcEEEeeCCCCc
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQTLIT--NSG-KL------------------LKYGSLIVATGCTAS  175 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~--~~g-~~------------------~~~~~lila~G~~~~  175 (306)
                      .+++.|++++.++.+.+++.+...+..  .++ ..                  +.+|.||+|+|..+.
T Consensus       580 ~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~  647 (729)
T 1o94_A          580 RLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE  647 (729)
T ss_dssp             HHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEEC
T ss_pred             HHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCC
Confidence            677899999999999998865433332  232 22                  899999999997765

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.66  E-value=4.1e-05  Score=68.73  Aligned_cols=53  Identities=21%  Similarity=0.294  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHc--------CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          250 SLAQRYEQLYQQN--------GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       250 ~~~~~~~~~~~~~--------gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      .+.+.+.+.+.+.        |++|+++++|++|+.. ++.+ .|++.+|+++.+|.||+|+|
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~vI~a~~  267 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS-PGGV-TVKTEDNSVYSADYVMVSAS  267 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC-SSCE-EEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEc-CCcE-EEEECCCCEEEcCEEEEecC
Confidence            4555555555443        6889999999999974 4455 48999998999999999987

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.63  E-value=0.00035  Score=64.57  Aligned_cols=96  Identities=19%  Similarity=0.206  Sum_probs=71.0

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcccc-------c------------------------cc--------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ-------R------------------------LF--------  247 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~~-------~------------------------~~--------  247 (306)
                      .|+|||+|..|+-.|..+++.+  .+|.++.+.+....       .                        ..        
T Consensus         7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~~   86 (602)
T 1kf6_A            7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYF   86 (602)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            5899999999999999999988  89999988632100       0                        00        


Q ss_pred             ----------------------------------------------CHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCC
Q 021871          248 ----------------------------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSD  280 (306)
Q Consensus       248 ----------------------------------------------~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~  280 (306)
                                                                    ...+...+.+.+.+.| |+++.++.|+++.. ++
T Consensus        87 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~-~~  165 (602)
T 1kf6_A           87 VHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV-DD  165 (602)
T ss_dssp             HHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE-ET
T ss_pred             HHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-eC
Confidence                                                          0123344555566677 99999999999986 46


Q ss_pred             CcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          281 GRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       281 ~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      +++.+|..   .+|+  .+.+|.||+|||.
T Consensus       166 g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  195 (602)
T 1kf6_A          166 GHVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (602)
T ss_dssp             TEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             CEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            66666643   5676  6899999999985

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.61  E-value=3.5e-05  Score=75.64  Aligned_cols=90  Identities=16%  Similarity=0.151  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcccc-------c-ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      +++|+|||+|+.|+..|..|++.+. +|+++.+.+.+..       . ..+....+...+.+++.||+++.++.+..   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence            5689999999999999999999998 7999999865432       1 12445566666778889999999987631   


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                        .    .++++++..+.+|.||+|||.
T Consensus       264 --~----~v~~~~~~~~~~d~vvlAtGa  285 (1025)
T 1gte_A          264 --N----EITLNTLKEEGYKAAFIGIGL  285 (1025)
T ss_dssp             --T----SBCHHHHHHTTCCEEEECCCC
T ss_pred             --c----eEEhhhcCccCCCEEEEecCC
Confidence              1    134444555789999999995

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.59  E-value=2.6e-05  Score=69.75  Aligned_cols=88  Identities=14%  Similarity=0.123  Sum_probs=66.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCccc--------ccc-cCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL--------QRL-FTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      ..+|+|||+|+.|+..|..|.+.+  .+|+++.+.+.+.        +.. ....+...+.+.+++.|++++.++.|.  
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~--   83 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG--   83 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT--
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe--
Confidence            578999999999999999999987  8999999987654        110 122455667777888899999997662  


Q ss_pred             EeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          276 EAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                         .     .|.+.+. .+.+|.||+|||.
T Consensus        84 ---~-----~V~~~~~-~~~~d~lVlAtGs  104 (460)
T 1cjc_A           84 ---R-----DVTVQEL-QDAYHAVVLSYGA  104 (460)
T ss_dssp             ---T-----TBCHHHH-HHHSSEEEECCCC
T ss_pred             ---e-----EEEeccc-eEEcCEEEEecCc
Confidence               1     1333333 5789999999995

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.59  E-value=1.7e-05  Score=70.80  Aligned_cols=88  Identities=14%  Similarity=0.117  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHh-C------CCcEEEEecCCccccc---------ccCHHHHHHHHHHHHHcCCEEEcCc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVG-W------KLDTTIIFPENHLLQR---------LFTPSLAQRYEQLYQQNGVKFVKGA  270 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~-~------~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~  270 (306)
                      ..+|+|||+|+.|+..|..|.+ .      +.+|+++.+.+.+...         .....+...+.+.+++.|++++.++
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            4579999999999999999998 6      8899999998765321         0122456667777888899999885


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          271 SIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       271 ~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .|   .   .    .|.++++ .+.+|.||+|||.
T Consensus        83 ~v---~---~----~v~~~~~-~~~~d~lViAtG~  106 (456)
T 1lqt_A           83 VV---G---E----HVQPGEL-SERYDAVIYAVGA  106 (456)
T ss_dssp             CB---T---T----TBCHHHH-HHHSSEEEECCCC
T ss_pred             EE---C---C----EEEECCC-eEeCCEEEEeeCC
Confidence            53   1   1    1445555 5889999999996

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.57  E-value=3.1e-05  Score=72.32  Aligned_cols=36  Identities=22%  Similarity=0.231  Sum_probs=32.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcC--------CCCCcEEEeccCC-CC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHG--------MADGRLCIVSKEA-YA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g--------~~~~~V~vie~~~-~~   89 (306)
                      .++|+|||||++||++|++|.+.|        +   +|+|+|+++ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~---~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGI---DVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEE---EEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCc---eEEEEeccCccc
Confidence            468999999999999999999998        6   899999987 54

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.53  E-value=4.6e-05  Score=69.37  Aligned_cols=35  Identities=31%  Similarity=0.476  Sum_probs=31.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-cCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~-~g~~~~~V~vie~~~~   88 (306)
                      .+|+||||||.+|+.+|.+|++ .++   +|+|+|+...
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~---~VLvLEaG~~   52 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDS---RVLLIEAGEE   52 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTS---CEEEECSSBC
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCC---eEEEEcCCCC
Confidence            5899999999999999999998 455   9999999854

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.43  E-value=6.1e-05  Score=68.73  Aligned_cols=35  Identities=26%  Similarity=0.488  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|+||||||.+|+.+|.+|++ |.   +|+|+|+...
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~---~VlvLEaG~~   59 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KY---KVLVLERGSL   59 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TS---CEEEECSSBC
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CC---cEEEEecCCC
Confidence            35899999999999999999999 87   9999999864

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.42  E-value=0.00046  Score=62.93  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=29.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      -.|+|||+|..|+-.|..+++ +.+|.++.+.+.
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~   41 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV   41 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence            368999999999999999999 999999988754

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.42  E-value=8.5e-05  Score=68.19  Aligned_cols=37  Identities=32%  Similarity=0.430  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.+|+||||||.||+.+|.+|++.+  +.+|+|+|+...
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~--~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENP--NVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTST--TSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCC--CCcEEEEecCCC
Confidence            4589999999999999999999986  238999999865

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.39  E-value=0.0019  Score=60.22  Aligned_cols=52  Identities=13%  Similarity=0.089  Sum_probs=40.0

Q ss_pred             HHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       253 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ..+.+.+.+.||+++.++.|.++.. +++++.+|..   .+|+  .+.+|.||+|||-
T Consensus       162 ~~L~~~a~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  218 (660)
T 2bs2_A          162 FAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (660)
T ss_dssp             HHHHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHhCCCEEEECcEEEEEEe-cCCEEEEEEEEECCCCcEEEEEcCEEEEccCc
Confidence            3445556677999999999999986 4677767655   5675  4899999999984

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.39  E-value=0.0011  Score=61.87  Aligned_cols=97  Identities=19%  Similarity=0.252  Sum_probs=71.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHh-CCCcEEEEecCCccc--------------------------------------c----
Q 021871          208 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLL--------------------------------------Q----  244 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~-~~~~v~~~~~~~~~~--------------------------------------~----  244 (306)
                      -.|+|||+|+.|+-+|..|++ .+.+|+++++.+...                                      .    
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  112 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG  112 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence            369999999999999999999 899999998754311                                      0    


Q ss_pred             --c---------------------ccC-HHHHHHHHHHHHHcCC--EEEcCceEEEEEeCCC--C-cEEEEEeC------
Q 021871          245 --R---------------------LFT-PSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSD--G-RVAAVKLE------  289 (306)
Q Consensus       245 --~---------------------~~~-~~~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~~--~-~v~~v~~~------  289 (306)
                        .                     ..+ ..+...+.+.+++.|+  +++.+++|++++.+++  + .+ .|++.      
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v-~v~~~~~~~~~  191 (639)
T 2dkh_A          113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPV-TVTLERCDAAH  191 (639)
T ss_dssp             STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCE-EEEEEECSGGG
T ss_pred             CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCE-EEEEEeccccC
Confidence              0                     000 2455667788888877  9999999999987442  1 23 45543      


Q ss_pred             CC--CEEecCEEEEecCC
Q 021871          290 DG--STIDADTVILLPYD  305 (306)
Q Consensus       290 ~G--~~i~~d~vv~a~g~  305 (306)
                      +|  +++.+|.||.|.|.
T Consensus       192 ~G~~~~i~a~~vVgADG~  209 (639)
T 2dkh_A          192 AGQIETVQARYVVGCDGA  209 (639)
T ss_dssp             TTCEEEEEEEEEEECCCT
T ss_pred             CCCeEEEEeCEEEECCCc
Confidence            46  47999999999985

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.31  E-value=0.00013  Score=67.04  Aligned_cols=36  Identities=17%  Similarity=0.415  Sum_probs=31.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~   87 (306)
                      ...+|+||||||.||+.+|.+|.+. +.   +|+|+|+..
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~---~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNI---SVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTC---CEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCC---cEEEEecCC
Confidence            3468999999999999999999875 44   999999986

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.31  E-value=0.00016  Score=65.46  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ..+|++|||+|++|+.+|.+|.+.|+   +|+|+|+....
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~---~v~~~e~~~~~   40 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGV---QTLMLEMGQLW   40 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCCC
Confidence            35799999999999999999999987   99999998643

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.30  E-value=0.0024  Score=58.41  Aligned_cols=93  Identities=16%  Similarity=0.281  Sum_probs=66.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc-------------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  244 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~-------------------------------------------  244 (306)
                      ..|+|||+|+.|+-+|..|++.+.+|+++++.+....                                           
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~  106 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV  106 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence            3699999999999999999999999999987643210                                           


Q ss_pred             -c-----c--------------------cC-HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC---C--C
Q 021871          245 -R-----L--------------------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--S  292 (306)
Q Consensus       245 -~-----~--------------------~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---G--~  292 (306)
                       .     .                    .+ ..+...+.+.+++.   ++.+++|++++.++++ + .+++.+   |  .
T Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~-v-~v~~~~~~~G~~~  181 (549)
T 2r0c_A          107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDH-V-RATITDLRTGATR  181 (549)
T ss_dssp             TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSC-E-EEEEEETTTCCEE
T ss_pred             CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCE-E-EEEEEECCCCCEE
Confidence             0     0                    00 12344455555554   8999999999875444 3 355443   6  4


Q ss_pred             EEecCEEEEecCC
Q 021871          293 TIDADTVILLPYD  305 (306)
Q Consensus       293 ~i~~d~vv~a~g~  305 (306)
                      ++.+|.||.|.|.
T Consensus       182 ~i~a~~vVgADG~  194 (549)
T 2r0c_A          182 AVHARYLVACDGA  194 (549)
T ss_dssp             EEEEEEEEECCCT
T ss_pred             EEEeCEEEECCCC
Confidence            7999999999985

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.27  E-value=0.00022  Score=64.54  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|++|||+|++|+.+|.+|.+.+.   +|+|+|+...
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~---~v~~~e~~~~   45 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGI---PTQIVEMGRS   45 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEECCCC
Confidence            45899999999999999999999887   9999999864

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.25  E-value=0.0016  Score=61.86  Aligned_cols=41  Identities=20%  Similarity=0.340  Sum_probs=35.0

Q ss_pred             cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       262 ~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      .|++|+++++|++|+.+++ .+ .|++.+|+++.+|.||+|+|
T Consensus       542 ~gl~I~l~t~V~~I~~~~~-~v-~V~~~~G~~i~Ad~VIvA~P  582 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGD-EV-QVTTTDGTGYSAQKVLVTVP  582 (776)
T ss_dssp             TTSCEESSCCEEEEECSSS-SE-EEEETTCCEEEESEEEECCC
T ss_pred             hCCcEEcCCeeEEEEEcCC-EE-EEEECCCcEEEcCEEEECCC
Confidence            3789999999999997444 44 58889998999999999987

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.25  E-value=0.00033  Score=60.94  Aligned_cols=84  Identities=15%  Similarity=0.152  Sum_probs=65.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCcc----------------------c-cc------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL----------------------L-QR------------------  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~--~~~v~~~~~~~~~----------------------~-~~------------------  245 (306)
                      +|+|||+|..|+.+|..|++.  +.+|+++++.+..                      . ..                  
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN   81 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence            689999999999999999998  9999999886543                      0 00                  


Q ss_pred             -------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          246 -------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       246 -------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                   .....+.+.+.+.+++.|++++++++|++++..             .++.+|.||.|.|.
T Consensus        82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-------------~~~~ad~vV~AdG~  141 (381)
T 3c4a_A           82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-------------PLADYDLVVLANGV  141 (381)
T ss_dssp             SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-------------CGGGCSEEEECCGG
T ss_pred             eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-------------ccccCCEEEECCCC
Confidence                         012456777888888889999999999888631             13578899988874

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.17  E-value=0.00028  Score=65.03  Aligned_cols=37  Identities=22%  Similarity=0.467  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHH-cCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~-~g~~~~~V~vie~~~~~   89 (306)
                      ..+|++|||+|++|+.+|.+|.+ .+.   +|+|+|+....
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~---~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKI---KVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTC---CEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCC---cEEEEecCCcc
Confidence            45899999999999999999999 677   99999998653

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.14  E-value=0.00027  Score=64.65  Aligned_cols=46  Identities=24%  Similarity=0.378  Sum_probs=36.4

Q ss_pred             HHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC---CC--EEecC-EEEEecC
Q 021871          259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDAD-TVILLPY  304 (306)
Q Consensus       259 ~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---G~--~i~~d-~vv~a~g  304 (306)
                      .++.|++|++++.|++|..++++++.+|+..+   |+  .+.++ .||+|+|
T Consensus       219 ~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG  270 (546)
T 2jbv_A          219 VEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTG  270 (546)
T ss_dssp             TTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSH
T ss_pred             hcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecC
Confidence            34679999999999999874337788888754   53  68898 9999987

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.11  E-value=0.00018  Score=65.83  Aligned_cols=36  Identities=22%  Similarity=0.429  Sum_probs=31.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-cCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~-~g~~~~~V~vie~~~~~   89 (306)
                      .+|+||||||.||+.+|.+|++ .+.   +|+|+|+....
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~---~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDV---SVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTC---CEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCC---cEEEEecCCcc
Confidence            4799999999999999999998 455   99999998653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.98  E-value=0.0013  Score=48.42  Aligned_cols=37  Identities=11%  Similarity=0.253  Sum_probs=32.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+.+|+|+|.|..|..+|..|.+.|+   +|+++|+++.
T Consensus         5 ~~~~~viIiG~G~~G~~la~~L~~~g~---~v~vid~~~~   41 (140)
T 3fwz_A            5 DICNHALLVGYGRVGSLLGEKLLASDI---PLVVIETSRT   41 (140)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTC---CEEEEESCHH
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCHH
Confidence            345689999999999999999999998   9999998643

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.91  E-value=0.0071  Score=56.56  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=29.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHh-----CCCcEEEEecCC
Q 021871          209 KVVVVGGGYIGMEVAAAAVG-----WKLDTTIIFPEN  240 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~-----~~~~v~~~~~~~  240 (306)
                      .|+|||+|+.|+-+|..|++     .+.+|.++.+.+
T Consensus        10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~   46 (665)
T 1pn0_A           10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   46 (665)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence            69999999999999999999     999999998754

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.91  E-value=0.0071  Score=56.36  Aligned_cols=51  Identities=18%  Similarity=0.129  Sum_probs=37.7

Q ss_pred             HHHHHHHc-CC-EEEcCceEEEEEeCCC--CcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          255 YEQLYQQN-GV-KFVKGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       255 ~~~~~~~~-gv-~i~~~~~v~~i~~~~~--~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      +.+.+++. || +++.++.|+++..+++  +++.+|..   .+|+  .+.++.||+|||.
T Consensus       157 l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG  216 (643)
T 1jnr_A          157 IAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGG  216 (643)
T ss_dssp             HHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred             HHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCc
Confidence            33444555 99 9999999999986333  27777764   5665  5899999999984

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.75  E-value=0.0023  Score=47.83  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ...+++|+|+|..|...|..|.+.|+   +|+++|++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~---~V~vid~~   35 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ---NVTVISNL   35 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC---CEEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
Confidence            35689999999999999999999998   99999986

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.72  E-value=0.002  Score=48.24  Aligned_cols=36  Identities=25%  Similarity=0.417  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...+|+|||+|..|..+|..|.+.|.   +|+++++++.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~---~V~vid~~~~   53 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGH---SVVVVDKNEY   53 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEECCHH
Confidence            35689999999999999999999998   9999998643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.71  E-value=0.0022  Score=47.12  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=31.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.+++|+|+|..|..+|..|.+.|+   +|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~---~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK---KVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---eEEEEECCH
Confidence            4689999999999999999999998   999999753

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=96.61  E-value=0.0025  Score=58.89  Aligned_cols=56  Identities=18%  Similarity=0.161  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCC-CcEEEEEeCCCCEEecCEEEEec
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTVILLP  303 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~v~~v~~~~G~~i~~d~vv~a~  303 (306)
                      ...+.+.+.+.+++.|++++++++|.+|...++ |++.+|.+.+|+++.||.||+.+
T Consensus       377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~  433 (650)
T 1vg0_A          377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED  433 (650)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG
T ss_pred             hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEECh
Confidence            567888899999999999999999999986433 78888988889999999999854

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.45  E-value=0.01  Score=55.36  Aligned_cols=51  Identities=10%  Similarity=0.096  Sum_probs=37.8

Q ss_pred             HHHHHHHc--CCEEEcCceEEEEEeCCC--CcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          255 YEQLYQQN--GVKFVKGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       255 ~~~~~~~~--gv~i~~~~~v~~i~~~~~--~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      +.+.+++.  ||+++.++.+.++..+++  |++.+|..   .+|+  .+.++.||+|||-
T Consensus       172 L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG  231 (662)
T 3gyx_A          172 VAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGG  231 (662)
T ss_dssp             HHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred             HHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCc
Confidence            45555565  999999999998776333  37777754   4554  5889999999984

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.43  E-value=0.021  Score=51.45  Aligned_cols=55  Identities=13%  Similarity=0.063  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCC-------cEEEEEeCCC-----CEEecCEEEEecCC
Q 021871          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-------RVAAVKLEDG-----STIDADTVILLPYD  305 (306)
Q Consensus       250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-------~v~~v~~~~G-----~~i~~d~vv~a~g~  305 (306)
                      ++.+.+....++.+..+.++++|++++..+++       .+ .|++.++     +++.++.||+|||.
T Consensus       146 E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~-~V~~~~~~~g~~~~~~ar~vVlatG~  212 (501)
T 4b63_A          146 EFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFF-TVRSRNVETGEISARRTRKVVIAIGG  212 (501)
T ss_dssp             HHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEE-EEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceE-EEEEecCCCceEEEEEeCEEEECcCC
Confidence            45556666666667779999999999864432       23 4665443     25889999999995

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.41  E-value=0.0039  Score=45.41  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+|+|||+|..|..+|..|.+.|+   +|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~---~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH---DIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            589999999999999999999997   899999753

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.37  E-value=0.0037  Score=44.06  Aligned_cols=34  Identities=12%  Similarity=0.265  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcC-CCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g-~~~~~V~vie~~~   87 (306)
                      +++|+|+|+|..|..++..|.+.| +   +|++++++.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~---~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNY---SVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSE---EEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCc---eEEEEeCCH
Confidence            468999999999999999999998 6   899998753

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.21  E-value=0.0053  Score=44.88  Aligned_cols=34  Identities=21%  Similarity=0.417  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.+|+|+|+|..|..+|..|.+.|+   +|++++++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~---~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH---EVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4679999999999999999999997   899998753

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=96.14  E-value=0.0091  Score=53.12  Aligned_cols=38  Identities=11%  Similarity=0.209  Sum_probs=35.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ..+||+|||||++||++|..|++.|+   +|+|+|+++..+
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~---~V~vlE~~~~~G   47 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGK---KVLHIDKQDHYG   47 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCCCC
Confidence            45899999999999999999999998   999999998765

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.13  E-value=0.0079  Score=46.24  Aligned_cols=35  Identities=14%  Similarity=0.102  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~   87 (306)
                      ...+|+|+|+|..|..+|..|.+. |+   +|+++|+++
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~---~V~vid~~~   73 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGK---ISLGIEIRE   73 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCS---CEEEEESCH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCC---eEEEEECCH
Confidence            356899999999999999999999 98   899999764

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=96.01  E-value=0.0075  Score=53.33  Aligned_cols=38  Identities=13%  Similarity=0.306  Sum_probs=34.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ..+||+|||||++|+++|..|++.|+   +|+|+|+++..+
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~---~v~~~e~~~~~g   42 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGK---KVLHMDRNPYYG   42 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCcc
Confidence            45899999999999999999999998   999999987754

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.85  E-value=0.01  Score=47.15  Aligned_cols=36  Identities=25%  Similarity=0.525  Sum_probs=32.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+.+.|+|||||..|...|..|.+.|.   +|+|++++.
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA---~VtVvap~~   64 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGA---AITVVAPTV   64 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCC---CEEEECSSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCCC
Confidence            456899999999999999999999997   999999863

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=95.85  E-value=0.031  Score=51.67  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=35.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      +.+||+|||+|..|..+|..|++.|+   +|+++|++++.+
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~---~vl~id~~~~~g   44 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQ---RVLHVDSRSYYG   44 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCC---EEEEEcCCCccc
Confidence            46999999999999999999999998   999999998875

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.64  E-value=0.014  Score=47.31  Aligned_cols=35  Identities=14%  Similarity=0.202  Sum_probs=32.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      -.|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            35999999999999999999999999999988765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.57  E-value=0.014  Score=51.93  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.++|+|||.|.+|+++|+.|.++|+   +|++.|.+.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~---~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGA---IVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC---EEEEEeCCc
Confidence            45799999999999999999999998   999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.53  E-value=0.0083  Score=49.30  Aligned_cols=36  Identities=19%  Similarity=0.443  Sum_probs=32.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+.+.|+|||||..|+..|..|.+.|.   +|+|++++.
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga---~VtViap~~   46 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGC---KLTLVSPDL   46 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC---EEEEEEEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCC---EEEEEcCCC
Confidence            346799999999999999999999998   999999864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.45  E-value=0.014  Score=46.25  Aligned_cols=33  Identities=27%  Similarity=0.535  Sum_probs=30.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +|+|+|+|..|..+|..|.+.|+   +|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~---~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY---GVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC---CEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC---eEEEEECCHH
Confidence            69999999999999999999998   9999997643

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.44  E-value=0.01  Score=52.50  Aligned_cols=36  Identities=17%  Similarity=0.276  Sum_probs=32.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      .++|+|||.|.+|+++|+.|.++|+   +|++.|.+...
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~---~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGV---TPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTC---CCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCC---EEEEEECCCCc
Confidence            4689999999999999999999998   99999987553

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.41  E-value=0.019  Score=47.50  Aligned_cols=36  Identities=14%  Similarity=0.118  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.++|.|||+|.-|...|..|++.|+   +|+++|+++.
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G~---~V~l~d~~~~   38 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHGF---AVTAYDINTD   38 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCHH
Confidence            35689999999999999999999998   9999997643

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.33  E-value=0.022  Score=47.67  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +++|.|||+|.-|...|..|++.|+   +|+++|+++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~---~V~~~d~~~   48 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGH---TVVLVDQTE   48 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            4689999999999999999999998   999999864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.16  E-value=0.023  Score=48.74  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=32.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +++.+|.|||+|.-|.+.|..|++.|+   +|+++++++.
T Consensus        27 ~~~mkI~VIGaG~mG~alA~~La~~G~---~V~l~~r~~~   63 (356)
T 3k96_A           27 PFKHPIAILGAGSWGTALALVLARKGQ---KVRLWSYESD   63 (356)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHTTTC---CEEEECSCHH
T ss_pred             ccCCeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence            345689999999999999999999998   9999998643

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.90  E-value=0.029  Score=47.37  Aligned_cols=33  Identities=15%  Similarity=0.409  Sum_probs=30.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+|+|||+|.-|.+.|..|++.|+   +|+++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~---~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH---CVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC---EEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC---eEEEEeCCh
Confidence            589999999999999999999998   999999864

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.89  E-value=0.03  Score=47.40  Aligned_cols=35  Identities=20%  Similarity=0.193  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHH-HHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGY-AARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~-aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +++|.|||.|.+|++ +|..|.++|+   +|++.|....
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~---~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGF---EVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCC---EEEEEcCCCC
Confidence            568999999999997 8889999999   9999998754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.81  E-value=0.036  Score=48.06  Aligned_cols=36  Identities=17%  Similarity=0.131  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...+|+|||+|..|+.+|..+...|.   +|+++|+...
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa---~V~v~D~~~~  224 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA---VVSATDVRPA  224 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence            35799999999999999999999998   9999998754

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.80  E-value=0.032  Score=45.29  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=32.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|+|||+|-.|..+|..|++.|..  +++++|++..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~--~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCC--eEEEEcCCCc
Confidence            46899999999999999999999975  8999998754

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=94.69  E-value=0.038  Score=49.28  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ..+||+|||||++||++|+.|.+.|+.  +|+|+|+.+..+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~--~v~~~e~~~~~g   41 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGIT--DLLILEATDHIG   41 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCC--CEEEECSSSSSB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCC--ceEEEeCCCCCC
Confidence            357999999999999999999999863  699999987643

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=94.69  E-value=0.038  Score=47.46  Aligned_cols=36  Identities=28%  Similarity=0.315  Sum_probs=32.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      +++|+|||||..|..+|+.+++.|+   ++.++|+++..
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~---~vv~vd~~~~~   36 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGM---KVVLVDKNPQA   36 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCCCC
Confidence            4789999999999999999999999   99999987653

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.68  E-value=0.035  Score=47.47  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.+|.|||+|..|...|..|.+.|+   +|+++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~---~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ---SVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC---EEEEEeCCH
Confidence            4689999999999999999999998   899998764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.67  E-value=0.038  Score=46.91  Aligned_cols=33  Identities=21%  Similarity=0.445  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ..+|.|||+|.-|.+.|..|++.|+   +|+++++.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~---~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE---AINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC---CEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC---EEEEEECh
Confidence            3589999999999999999999998   89999974

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=94.62  E-value=0.026  Score=50.62  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=30.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  244 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~  244 (306)
                      ++|+|||+|..|+-.|..|++.|.+|+++++++++..
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG   38 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGG   38 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-----
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCC
Confidence            6899999999999999999999999999999887653

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.61  E-value=0.037  Score=46.35  Aligned_cols=33  Identities=12%  Similarity=0.228  Sum_probs=30.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+|.|||+|..|...|..|.+.|+   +|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~---~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN---DVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC---cEEEEECCH
Confidence            489999999999999999999998   999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.59  E-value=0.034  Score=46.73  Aligned_cols=33  Identities=18%  Similarity=0.286  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+|+|||+|--|.+.|..|.+.|+   +|++++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~---~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE---DVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC---CEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC---eEEEEEcCc
Confidence            589999999999999999999997   899999864

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.56  E-value=0.042  Score=46.10  Aligned_cols=37  Identities=11%  Similarity=0.197  Sum_probs=32.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .++.+|.|||.|.-|...|..|++.|+   +|++++++..
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~---~V~~~dr~~~   55 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGF---KVTVWNRTLS   55 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSGG
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence            345689999999999999999999998   9999998754

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.54  E-value=0.037  Score=47.61  Aligned_cols=36  Identities=17%  Similarity=0.043  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...+|+|||+|..|+.+|+.|...|.   +|+++|+...
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa---~V~v~D~~~~  218 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA---KTTGYDVRPE  218 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSGG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            35799999999999999999999997   8999998754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.53  E-value=0.046  Score=46.95  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=32.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ....+|+|+|||-+|..+|+.|...|.+  +|+++|+.
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~--~I~v~Dr~  225 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRK  225 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECC
Confidence            3467999999999999999999999975  89999987

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.47  E-value=0.055  Score=44.59  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=31.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +++|+|.|+|..|..++..|.+.|+   +|+++++...
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~---~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGH---EVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC---CEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence            4689999999999999999999998   9999998754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.40  E-value=0.054  Score=42.60  Aligned_cols=35  Identities=20%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|.|||+|.-|.+.|..|.+.|+   +|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~---~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGH---EVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC---EEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence            4689999999999999999999998   9999987654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.34  E-value=0.018  Score=51.32  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=31.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++|+|+|+|-.|.+.|..|.+.|+   +|+++|+++.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~---~v~vId~d~~   37 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENN---DITIVDKDGD   37 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTE---EEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHH
Confidence            479999999999999999999998   9999998754

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.33  E-value=0.053  Score=46.63  Aligned_cols=36  Identities=25%  Similarity=0.457  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ...+|||+|||.+|+.+|+.|...|.+  +|+++|+..
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~--~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGAT--KVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCC
Confidence            457999999999999999999999975  999999874

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.25  E-value=0.053  Score=47.48  Aligned_cols=35  Identities=14%  Similarity=0.376  Sum_probs=31.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|+|||.|..|..+|..|.+.|+   +|+++|+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~---~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV---KMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHH
Confidence            3589999999999999999999998   9999998754

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.12  E-value=0.072  Score=45.16  Aligned_cols=35  Identities=11%  Similarity=0.228  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.+|+|||+|..|.++|..|++.|+-  +|+++|.+.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~--~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCh
Confidence            46899999999999999999999863  599999764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.11  E-value=0.06  Score=45.28  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|.|||+|.-|-..|..++..|+   +|+++|..+.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~---~V~l~D~~~~   40 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGF---RVKLYDIEPR   40 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC---CEEEECSCHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC---eEEEEECCHH
Confidence            4689999999999999999999999   9999998653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.08  E-value=0.056  Score=47.93  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=30.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+|.|||.|..|+..|..|++.|+   +|+++|+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~---~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA---NVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC---EEEEEECCH
Confidence            589999999999999999999998   999999864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.07  E-value=0.04  Score=43.75  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=30.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEE-eccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCI-VSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~v-ie~~~   87 (306)
                      +++.+|.|||+|.-|.+.|..|.+.|+   +|++ ++++.
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~---~V~~v~~r~~   57 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQI---PAIIANSRGP   57 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTC---CEEEECTTCG
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCC---EEEEEECCCH
Confidence            335689999999999999999999998   8888 77654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.06  E-value=0.064  Score=43.30  Aligned_cols=37  Identities=14%  Similarity=0.288  Sum_probs=32.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...++|.|||+|.-|.+.|..|.+.|+   +|++++++..
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~---~V~~~~r~~~   53 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGH---EVTIGTRDPK   53 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCC---EEEEEeCChh
Confidence            456799999999999999999999998   9999998644

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.04  E-value=0.067  Score=47.07  Aligned_cols=36  Identities=17%  Similarity=0.144  Sum_probs=32.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .++.+|.|||.|..||..|..|++.|+   +|+.+|-++
T Consensus        19 ~~m~~IaViGlGYVGLp~A~~~A~~G~---~V~g~Did~   54 (444)
T 3vtf_A           19 SHMASLSVLGLGYVGVVHAVGFALLGH---RVVGYDVNP   54 (444)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSCH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCC---cEEEEECCH
Confidence            456799999999999999999999999   999999764

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=93.99  E-value=0.073  Score=44.89  Aligned_cols=38  Identities=11%  Similarity=0.191  Sum_probs=31.7

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .|++.+|+|||+|..|.++|..|+..++.  +|+++|...
T Consensus         4 ~m~~~kI~viGaG~vG~~~a~~l~~~~~~--~v~L~Di~~   41 (324)
T 3gvi_A            4 SMARNKIALIGSGMIGGTLAHLAGLKELG--DVVLFDIAE   41 (324)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred             CCcCCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEeCCc
Confidence            35567999999999999999999999873  899999754

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.98  E-value=0.063  Score=44.30  Aligned_cols=33  Identities=9%  Similarity=0.119  Sum_probs=30.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +|.|||+|.-|...|..|.+.|+   +|++++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~---~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH---EVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC---CEEEEEcCcc
Confidence            69999999999999999999998   9999998754

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=93.98  E-value=0.05  Score=45.27  Aligned_cols=33  Identities=15%  Similarity=0.201  Sum_probs=30.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+|+|||+|--|.+.|..|.+.|.   +|++++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~---~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLP---HTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCT---TCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC---eEEEEEecc
Confidence            589999999999999999999997   899999874

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.95  E-value=0.072  Score=42.07  Aligned_cols=35  Identities=26%  Similarity=0.411  Sum_probs=29.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ++.+|.|||+|..|...|..|.+.|+   +|++++++.
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~---~V~~~~r~~   61 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGF---KVVVGSRNP   61 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTC---CEEEEESSH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            34689999999999999999999998   899988753

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=93.91  E-value=0.065  Score=42.76  Aligned_cols=36  Identities=17%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             CCCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+.+.|+|.|| |..|..++.+|.++|+   +|+++.++.
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~---~V~~~~R~~   55 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGH---EPVAMVRNE   55 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSG
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCC---eEEEEECCh
Confidence            34578999998 9999999999999998   999998763

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.88  E-value=0.068  Score=45.85  Aligned_cols=38  Identities=11%  Similarity=0.135  Sum_probs=32.0

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++++.+|.|||.|.-|...|..|.+.|+   +|+++++...
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~---~V~v~dr~~~   56 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGH---ECVVYDLNVN   56 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCC---EEEEEeCCHH
Confidence            3455799999999999999999999998   9999998643

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=93.84  E-value=0.081  Score=44.47  Aligned_cols=36  Identities=11%  Similarity=0.272  Sum_probs=31.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ++..+|.|||+|..|.++|+.|+..|+  .+|+++|..
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~--~~v~l~D~~   41 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKEL--ADVVLVDIP   41 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEecc
Confidence            445789999999999999999999986  389999976

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.83  E-value=0.054  Score=44.58  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=31.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +++|+|.|+|..|..++..|.+.|+   +|+++.+...
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~---~V~~~~r~~~   39 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW---RIIGTSRNPD   39 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC---EEEEEESCGG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC---EEEEEEcChh
Confidence            4689999999999999999999998   9999988653

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.80  E-value=0.069  Score=46.58  Aligned_cols=35  Identities=14%  Similarity=0.111  Sum_probs=31.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|+|||+|.+|+.+|..+...|.   +|+++|++..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga---~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGA---IVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence            5689999999999999999999997   8999997643

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.79  E-value=0.057  Score=47.98  Aligned_cols=35  Identities=37%  Similarity=0.609  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.++|+|||||.+|...+..|.+.|.   +|+|++++.
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga---~V~vi~~~~   45 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGA---RLTVNALTF   45 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB---EEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC---EEEEEcCCC
Confidence            45789999999999999999999997   999999863

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.79  E-value=0.085  Score=41.87  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=31.4

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      .+++|+|||+|.+|..-+..|.+.+.+|+++.+.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            4789999999999999999999999999999764

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=93.78  E-value=0.07  Score=43.29  Aligned_cols=37  Identities=19%  Similarity=0.300  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +..+|+|||+|-.|..+|..|++.|..  +++|+|.+..
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg--~i~lvD~d~v   63 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVG--TLVLADDDDV   63 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCS--EEEEECCCBC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCC--eEEEEeCCCc
Confidence            357999999999999999999999985  8999998754

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.77  E-value=0.17  Score=42.60  Aligned_cols=32  Identities=19%  Similarity=0.192  Sum_probs=29.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      .+|+|+|.|..|.-+|..|++.+.+|+++.|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            47999999999999999999999999999875

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=93.73  E-value=0.082  Score=44.73  Aligned_cols=37  Identities=19%  Similarity=0.538  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +..+|+|||+|-.|..+|.+|++.|..  +++++|.+..
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg--~ItlvD~D~V   69 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVR--KITFVDNGTV   69 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECCCBC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEecCCEe
Confidence            357999999999999999999999986  9999998754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=93.72  E-value=0.07  Score=47.68  Aligned_cols=34  Identities=12%  Similarity=0.290  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ..+|.|||+|..|+..|..|++.|+   +|+++|++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~---~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGH---DVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            4689999999999999999999998   999999864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=93.71  E-value=0.077  Score=44.30  Aligned_cols=36  Identities=22%  Similarity=0.164  Sum_probs=31.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++.+|.|||.|.-|...|..|++.|+   +|+++++++.
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~---~V~~~dr~~~   41 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGL---STWGADLNPQ   41 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEECCHH
Confidence            34689999999999999999999998   9999998643

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=93.70  E-value=0.086  Score=44.39  Aligned_cols=37  Identities=19%  Similarity=0.366  Sum_probs=30.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      +++.+|+|||+|..|.++|..|+..+. -.++.++|..
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~-~~ei~L~Di~   40 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD   40 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCS-CSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence            445799999999999999999998875 2378888864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=93.68  E-value=0.058  Score=44.95  Aligned_cols=35  Identities=14%  Similarity=0.086  Sum_probs=31.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.+|.|||.|.-|...|..|++.|+   +|+++++++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~---~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG---GVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT---CEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence            4689999999999999999999998   8999998754

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=93.65  E-value=0.066  Score=44.40  Aligned_cols=37  Identities=19%  Similarity=0.332  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +..+|+|||+|-.|..+|.+|++.|..  +++|+|.+..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG--~i~lvD~D~V   71 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIG--KLLLFDYDKV   71 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCC--EEEEECCCcc
Confidence            356999999999999999999999985  9999998754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.59  E-value=0.087  Score=45.65  Aligned_cols=36  Identities=19%  Similarity=0.089  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...+|+|||+|.+|+.++..+...|.   +|+++|+...
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga---~V~~~d~~~~  206 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA---VVMATDVRAA  206 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            45799999999999999999999997   8999997643

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=93.58  E-value=0.095  Score=44.11  Aligned_cols=35  Identities=17%  Similarity=0.370  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.+|+|||+|..|...|..|++.|+.  +|+++|.+.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~--~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLA--DVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCc--eEEEEeCCc
Confidence            46899999999999999999999863  699998764

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=93.52  E-value=0.1  Score=46.20  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=33.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +..++|.|||+|.-|...|..|++.|+   +|+++|.++.
T Consensus        52 ~~i~kVaVIGaG~MG~~IA~~la~aG~---~V~l~D~~~e   88 (460)
T 3k6j_A           52 YDVNSVAIIGGGTMGKAMAICFGLAGI---ETFLVVRNEQ   88 (460)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEECcHH
Confidence            345689999999999999999999998   9999998754

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=93.52  E-value=0.036  Score=47.67  Aligned_cols=32  Identities=16%  Similarity=0.270  Sum_probs=29.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|.|||+|.-|.+.|..|.+.|+   +|++++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~---~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR---EVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE---EEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            89999999999999999999998   999999864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=93.45  E-value=0.086  Score=44.69  Aligned_cols=38  Identities=8%  Similarity=0.133  Sum_probs=30.3

Q ss_pred             CCCCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           48 ANENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        48 ~~~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+.+.|+|.|| |..|..++..|.+.|+   +|+++++...
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~   54 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGR---TVRGFDLRPS   54 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTC---CEEEEESSCC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCC---EEEEEeCCCC
Confidence            345678999998 9999999999999998   9999988653

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=93.44  E-value=0.11  Score=43.79  Aligned_cols=37  Identities=16%  Similarity=0.307  Sum_probs=31.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      |...+|+|||+|..|.++|..|+..++.  +|.++|...
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~--~v~l~Di~~   39 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLG--DVVLFDIAQ   39 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCc--eEEEEeCCh
Confidence            4457899999999999999999999873  899998764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.42  E-value=0.031  Score=40.99  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ..+|+|||+|..|..+|..|.+.|.   +|+++++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~---~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQY---KVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTC---EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---EEEEEcCCH
Confidence            5689999999999999999998886   788988753

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=93.40  E-value=0.091  Score=44.30  Aligned_cols=39  Identities=21%  Similarity=0.270  Sum_probs=30.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCC-CCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~-~~~~V~vie~~~   87 (306)
                      +++.+|.|||+|.-|.+.|..|.+.|. +..+|++++++.
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            344589999999999999999999982 112899998864

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=93.36  E-value=0.076  Score=43.95  Aligned_cols=34  Identities=18%  Similarity=0.320  Sum_probs=31.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++|.|||.|.-|...|..|.+.|+   +|+++++++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~---~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF---DVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC---CEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC---eEEEEcCCHH
Confidence            479999999999999999999998   8999998754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.33  E-value=0.09  Score=44.30  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...+|.|||.|.-|...|..|++.|+   +|++++++..
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~---~V~~~dr~~~   65 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGY---ALQVWNRTPA   65 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCC---eEEEEcCCHH
Confidence            34689999999999999999999998   8999998643

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=93.32  E-value=0.078  Score=47.19  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=32.7

Q ss_pred             CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       264 v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ++|+++++|++|+.. ++.+ .|++.+| ++.+|.||+|+|
T Consensus       249 ~~i~~~~~V~~i~~~-~~~~-~v~~~~g-~~~ad~vV~a~p  286 (475)
T 3lov_A          249 SEIRLETPLLAISRE-DGRY-RLKTDHG-PEYADYVLLTIP  286 (475)
T ss_dssp             CEEESSCCCCEEEEE-TTEE-EEECTTC-CEEESEEEECSC
T ss_pred             CEEEcCCeeeEEEEe-CCEE-EEEECCC-eEECCEEEECCC
Confidence            799999999999974 4445 5888888 899999999987

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=93.32  E-value=0.078  Score=47.86  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=33.6

Q ss_pred             CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       264 v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      .+|+++++|++|...+++.+ .|++.+|+++.+|.||+|+|
T Consensus       215 ~~i~~~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~p  254 (516)
T 1rsg_A          215 NWLKLSCEVKSITREPSKNV-TVNCEDGTVYNADYVIITVP  254 (516)
T ss_dssp             GGEETTCCEEEEEECTTSCE-EEEETTSCEEEEEEEEECCC
T ss_pred             CEEEECCEEEEEEEcCCCeE-EEEECCCcEEECCEEEECCC
Confidence            57999999999997434444 68999998899999999987

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=93.31  E-value=0.11  Score=40.12  Aligned_cols=33  Identities=15%  Similarity=0.381  Sum_probs=30.1

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.|+|+|| |..|..++..|.+.|+   +|++++++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~---~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC---eEEEEEeCh
Confidence            57999998 9999999999999997   999998764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.29  E-value=0.11  Score=43.47  Aligned_cols=35  Identities=11%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|.|||+|.-|...|..|.+.|+   +|++++++..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~---~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGH---TVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCC---EEEEEeCCHH
Confidence            4689999999999999999999998   8999987643

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=93.26  E-value=0.11  Score=43.70  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.+|+|||+|..|.++|..|+..+. -.+|.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~-~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            4689999999999999999999875 34799999753

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=93.22  E-value=0.063  Score=44.96  Aligned_cols=31  Identities=16%  Similarity=0.443  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHc-----C-CCCCcEEEecc
Q 021871           52 REFVIVGGGNAAGYAARTFVEH-----G-MADGRLCIVSK   85 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~-----g-~~~~~V~vie~   85 (306)
                      .+|.|||+|.-|...|..|.+.     | +   +|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~---~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLL---EVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSE---EEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCC---CEEEEEc
Confidence            4899999999999999999998     8 7   8999987

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.21  E-value=0.097  Score=43.82  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+|+|||+|--|.+.|..|. .|.   +|++++++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~---~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYH---DVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTS---EEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCC---ceEEEECCH
Confidence            58999999999999999999 887   999999875

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=93.19  E-value=0.11  Score=43.87  Aligned_cols=42  Identities=14%  Similarity=0.243  Sum_probs=33.2

Q ss_pred             eecccCCCCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           43 AYSSFANENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        43 ~~~~~~~~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +..+...+.+.|+|.|| |..|..++..|.+.|+   +|+++++..
T Consensus        12 ~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~---~V~~~~r~~   54 (330)
T 2pzm_A           12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGH---EILVIDNFA   54 (330)
T ss_dssp             --CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTC---EEEEEECCS
T ss_pred             cCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCC
Confidence            33334455578999998 9999999999999998   999998753

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.17  E-value=0.1  Score=46.45  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=31.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ...+|.|||+|.-|...|..|++.|+   +|+++|+++
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~---~V~l~D~~~   70 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGI---SVVAVESDP   70 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC---EEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            34689999999999999999999998   999999764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.17  E-value=0.11  Score=44.65  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ..+|+|+|+|.+|+.++..|...|.   +|++++++.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga---~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA---QVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---EEEEEeCCH
Confidence            4789999999999999999999997   899998763

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=93.15  E-value=0.14  Score=43.26  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.+|+|||+|..|..+|..|+..|+-  +|.++|.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~--~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEeCCH
Confidence            45899999999999999999999873  599998653

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=93.14  E-value=0.1  Score=43.19  Aligned_cols=34  Identities=21%  Similarity=0.343  Sum_probs=31.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++|.|||.|.-|...|..|.+.|+   +|++++++..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~---~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC---SVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC---eEEEEcCCHH
Confidence            479999999999999999999998   9999998754

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.11  E-value=0.11  Score=44.15  Aligned_cols=36  Identities=14%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             CCCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      |.+++|+|.|| |..|..++..|.+.|+   +|.++.+..
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~---~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHR---PTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTC---CEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCC---CEEEEECCC
Confidence            34568999999 9999999999999997   899998865

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.10  E-value=0.13  Score=42.23  Aligned_cols=34  Identities=12%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ..+.++|+|+|-.|.++|+.|.+.|.   +|++++++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~---~V~v~~R~  151 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC---AVTITNRT  151 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC---EEEEEECC
Confidence            45789999999999999999999996   89998875

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.07  E-value=0.13  Score=43.18  Aligned_cols=36  Identities=11%  Similarity=0.362  Sum_probs=30.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ++.+|+|||+|..|.+.|+.|+..+. -.+|.++|.+
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~-~~ev~l~Di~   40 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDAN   40 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence            45699999999999999999998875 3379999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=93.07  E-value=0.12  Score=43.42  Aligned_cols=36  Identities=11%  Similarity=0.275  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.+|+|||+|..|...|..|++.|+ -.+|+++|++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~-~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            3589999999999999999999885 23799998763

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.05  E-value=0.14  Score=43.50  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=30.6

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        50 ~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ...+|+|||+ |..|.++|+.|..+|. ..+|.++|..
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~   43 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPF   43 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence            3568999998 9999999999999985 2379999964

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=93.05  E-value=0.15  Score=42.70  Aligned_cols=36  Identities=17%  Similarity=0.292  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +..+|.|||.|.-|...|..|.+.|+   +|++++++..
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~---~V~~~dr~~~   43 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK---RVAIWNRSPG   43 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            34689999999999999999999998   8999998643

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.04  E-value=0.084  Score=41.70  Aligned_cols=35  Identities=14%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +++|+|.|| |..|..++..|.+.|+   +|+++++...
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   39 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF---EVTAVVRHPE   39 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC---EEEEECSCGG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEEcCcc
Confidence            468999996 9999999999999998   9999998744

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=93.01  E-value=0.12  Score=42.53  Aligned_cols=38  Identities=21%  Similarity=0.522  Sum_probs=32.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.+|.|||+|.-|.+.|..|.+.|++..+|++++++..
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            46899999999999999999999874457999987643

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=92.99  E-value=0.12  Score=42.00  Aligned_cols=38  Identities=13%  Similarity=0.131  Sum_probs=31.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCC-CCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~-~~~~V~vie~~~~   88 (306)
                      +.+|.|||+|.-|.+.|..|.+.|+ +..+|++++++..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            3579999999999999999999982 1128999998754

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=92.99  E-value=0.12  Score=46.14  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..++|.|||+|.-|...|..|++.|+   +|+++|+++.
T Consensus         4 ~~~kVgVIGaG~MG~~IA~~la~aG~---~V~l~D~~~e   39 (483)
T 3mog_A            4 NVQTVAVIGSGTMGAGIAEVAASHGH---QVLLYDISAE   39 (483)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTC---CEEEECSCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC---eEEEEECCHH
Confidence            35689999999999999999999998   9999998754

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=92.97  E-value=0.11  Score=46.55  Aligned_cols=34  Identities=18%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~   87 (306)
                      +.+|.|||.|..|+..|..|++.  |+   +|+++|++.
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~---~V~~~D~~~   44 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHI---TVTVVDMNT   44 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTS---EEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCC---EEEEEECCH
Confidence            45899999999999999999999  56   899999754

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=92.95  E-value=0.12  Score=45.15  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=31.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      +|+|||+|..|+-.|..|++.+.+|+++++++.+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI   35 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            6899999999999999999999999999998765

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.93  E-value=0.19  Score=36.50  Aligned_cols=33  Identities=15%  Similarity=0.268  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      ..+++|+|.|..|..++..|.+.+.+|+++.+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~   39 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETS   39 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence            468999999999999999999999999999875

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=92.92  E-value=0.11  Score=43.58  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+|+|||+|..|.++|..|++.|. ..+|+++|++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~-~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGV-ADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEcCCH
Confidence            479999999999999999999984 22899999753

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=92.91  E-value=0.14  Score=43.19  Aligned_cols=36  Identities=14%  Similarity=0.370  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ...+|+|||+|..|.++|+.|+..++ -.+++++|..
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~-~~~l~l~D~~   39 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGI-TDELVVIDVN   39 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-CceEEEEecc
Confidence            35689999999999999999999886 2379999864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=92.89  E-value=0.12  Score=43.83  Aligned_cols=35  Identities=17%  Similarity=0.329  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +..+|.|||+|.-|...|..|.+.|+   +|++++++.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~---~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGE---EVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCC---eEEEEeCCH
Confidence            34689999999999999999999998   999998863

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=92.87  E-value=0.11  Score=46.12  Aligned_cols=52  Identities=13%  Similarity=0.127  Sum_probs=38.6

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCCEEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~~i~~d~vv~a~g  304 (306)
                      ...+.+.+.+.+   |++|+++++|++|+..++ .+ .|++   .+|+++.+|.||+|+|
T Consensus       237 ~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~~-~~-~v~~~~~~~g~~~~ad~vV~a~~  291 (478)
T 2ivd_A          237 LQVLIDALAASL---GDAAHVGARVEGLAREDG-GW-RLIIEEHGRRAELSVAQVVLAAP  291 (478)
T ss_dssp             THHHHHHHHHHH---GGGEESSEEEEEEECC---CC-EEEEEETTEEEEEECSEEEECSC
T ss_pred             HHHHHHHHHHHh---hhhEEcCCEEEEEEecCC-eE-EEEEeecCCCceEEcCEEEECCC
Confidence            445555555554   678999999999997444 44 6777   6777899999999987

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=92.85  E-value=0.12  Score=44.28  Aligned_cols=37  Identities=16%  Similarity=0.411  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +..+|+|||+|-.|..+|.+|++.|..  +++++|.+..
T Consensus       117 ~~~~VlvvG~GglGs~va~~La~aGvg--~i~lvD~D~V  153 (353)
T 3h5n_A          117 KNAKVVILGCGGIGNHVSVILATSGIG--EIILIDNDQI  153 (353)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCS--EEEEEECCBC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHhCCCC--eEEEECCCcC
Confidence            357999999999999999999999986  8999998754

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=92.85  E-value=0.13  Score=45.46  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=32.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..++.|||.|.-|+..|..|++.|+   +|+++|+++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~---~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGH---EVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4689999999999999999999999   9999998765

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.83  E-value=0.13  Score=44.32  Aligned_cols=35  Identities=26%  Similarity=0.421  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ....|+|+|+|..|+.+|..|...|.   +|+++++..
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga---~V~~~d~~~  199 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA---QVTILDVNH  199 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            35789999999999999999999998   899998753

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.76  E-value=0.15  Score=41.63  Aligned_cols=34  Identities=18%  Similarity=0.440  Sum_probs=30.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .++++|||+|-+|-++|+.|.+.|.   +|+|+.+..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~---~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL---QVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999995   999998763

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=92.75  E-value=0.12  Score=45.48  Aligned_cols=34  Identities=9%  Similarity=0.017  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|.|||.|..|+..|..|++ |+   +|+++|.++.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~---~V~~~D~~~~   69 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NH---EVVALDIVQA   69 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TS---EEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CC---eEEEEecCHH
Confidence            4589999999999999999998 88   9999998644

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=92.74  E-value=0.13  Score=42.73  Aligned_cols=35  Identities=9%  Similarity=0.114  Sum_probs=31.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+++|.|||+|.-|...|..|+ .|+   +|+++|+++.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~---~V~v~d~~~~   45 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKH---EVVLQDVSEK   45 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTS---EEEEECSCHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCC---EEEEEECCHH
Confidence            3579999999999999999999 998   9999998653

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=92.74  E-value=0.11  Score=45.74  Aligned_cols=34  Identities=21%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~  240 (306)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            4689999999999999999999999999999875

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=92.70  E-value=0.16  Score=43.01  Aligned_cols=35  Identities=11%  Similarity=0.247  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.+|+|||+|..|..+|..|+..|+-  +|+++|.+.
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~--~V~L~Di~~   48 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLG--DVYMFDIIE   48 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCH
Confidence            35899999999999999999999873  599999764

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=92.63  E-value=0.1  Score=46.02  Aligned_cols=44  Identities=16%  Similarity=0.196  Sum_probs=33.8

Q ss_pred             HHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       260 ~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++.|++|+++++|++|..++++.+ .|++ +|+++.+|.||+|+|.
T Consensus       223 ~~lg~~i~~~~~V~~i~~~~~~~v-~v~~-~~~~~~ad~VI~a~p~  266 (453)
T 2yg5_A          223 EALGDDVFLNAPVRTVKWNESGAT-VLAD-GDIRVEASRVILAVPP  266 (453)
T ss_dssp             HHHGGGEECSCCEEEEEEETTEEE-EEET-TTEEEEEEEEEECSCG
T ss_pred             HhcCCcEEcCCceEEEEEeCCceE-EEEE-CCeEEEcCEEEEcCCH
Confidence            344789999999999997433314 4766 6778999999999874

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=92.62  E-value=0.14  Score=44.17  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ...+|+|||+|..|+.+|..+...|.   +|+++|+..
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga---~V~~~d~~~  201 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA---TVTVLDINI  201 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC---EEEEEeCCH
Confidence            45789999999999999999999997   899999763

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.58  E-value=0.15  Score=42.81  Aligned_cols=34  Identities=18%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|+|||+|..|.+.|..|++.+. ..+|+++|.++
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~-g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQL-ARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            69999999999999999998632 22899999864

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.55  E-value=0.14  Score=43.15  Aligned_cols=32  Identities=16%  Similarity=0.378  Sum_probs=28.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      +.+|+|||+|.-|.+.|..|++.|+   +|+++ ++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~---~V~l~-~~   50 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGH---EVILI-AR   50 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTC---EEEEE-CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC---eEEEE-Ec
Confidence            4689999999999999999999998   89998 54

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=92.52  E-value=0.17  Score=41.71  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=30.8

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.+|.|||+ |.-|...|..|.+.|+   +|++++++.
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~---~V~~~~r~~   45 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH---HLAAIEIAP   45 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS---EEEEECCSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            358999999 9999999999999998   999999764

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=92.52  E-value=0.12  Score=45.97  Aligned_cols=34  Identities=15%  Similarity=0.349  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~   87 (306)
                      +.+|.|||.|..|+..|..|++.  |+   +|+++|++.
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~---~V~~~d~~~   40 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEI---RVTVVDVNE   40 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTS---EEEEECSCH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCC---EEEEEECCH
Confidence            35899999999999999999999  66   899999764

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=92.50  E-value=0.14  Score=43.63  Aligned_cols=37  Identities=16%  Similarity=0.284  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...+|+|||+|-.|..+|+.|++.|..  +++|+|.+..
T Consensus        35 ~~~~VlivG~GGlG~~ia~~La~~Gvg--~itlvD~d~V   71 (346)
T 1y8q_A           35 RASRVLLVGLKGLGAEIAKNLILAGVK--GLTMLDHEQV   71 (346)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCC--EEEEEECCCc
Confidence            357999999999999999999999986  9999998754

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=92.44  E-value=0.12  Score=43.37  Aligned_cols=34  Identities=21%  Similarity=0.149  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcC-CCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g-~~~~~V~vie~~~   87 (306)
                      +.+|.|||.|.-|...|..|++.| +   +|++++++.
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~---~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAA---RLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCS---EEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCC---eEEEEeCCC
Confidence            468999999999999999999999 8   999999875

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=92.43  E-value=0.067  Score=45.09  Aligned_cols=65  Identities=15%  Similarity=0.168  Sum_probs=42.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHh--CCCcEEEEecCCccccccc------C-HHHHHHHHHHHHHcCCEEEcCce
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRLF------T-PSLAQRYEQLYQQNGVKFVKGAS  271 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~--~~~~v~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~gv~i~~~~~  271 (306)
                      ...|+|||+|+.|+-.|..|++  .+.+|+++.+.+.+.....      + ..+...+.+.+++.|+++..+..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~~  138 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGD  138 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECCc
Confidence            3469999999999999999974  5889999998876532110      0 01112234455666776665544

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=92.39  E-value=0.083  Score=45.11  Aligned_cols=35  Identities=23%  Similarity=0.251  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcC-------CCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHG-------MADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g-------~~~~~V~vie~~~~   88 (306)
                      +.+|.|||+|.-|.+.|..|++.|       +   +|+++++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~---~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDP---RVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEE---EEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCC---eEEEEEcChh
Confidence            358999999999999999999998       6   8999998754

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=92.37  E-value=0.13  Score=42.64  Aligned_cols=34  Identities=12%  Similarity=0.157  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.+|.|||+|..|...|..|.+.|+   +|+++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~---~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGV---TVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTC---EEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC---eEEEEeCCH
Confidence            4589999999999999999999998   899998754

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=92.34  E-value=0.12  Score=45.51  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=29.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|.|||+|..|+..|..|++.|+   +|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~---~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGH---EVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            69999999999999999999998   899999764

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=92.33  E-value=0.13  Score=46.06  Aligned_cols=37  Identities=27%  Similarity=0.359  Sum_probs=33.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~  243 (306)
                      ..+|+|||+|.+|+..|..|.+.+.+|+++.+.+++.
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~g   69 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   69 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence            5689999999999999999999999999998876543

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=92.29  E-value=0.18  Score=42.29  Aligned_cols=34  Identities=12%  Similarity=0.292  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+|+|||+|..|...|..|+..|+-  +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~--~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCC--eEEEEeCCc
Confidence            5899999999999999999999853  599998653

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=92.27  E-value=0.17  Score=44.22  Aligned_cols=35  Identities=23%  Similarity=0.121  Sum_probs=32.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~  243 (306)
                      +|+|||+|..|+-.|..|++.+.+|+++++++.+.
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~G   36 (425)
T 3ka7_A            2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITG   36 (425)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCC
Confidence            68999999999999999999999999999987653

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=92.23  E-value=0.16  Score=44.40  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=31.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      +|+|||+|..|+-.|..|++.|.+|+++++.+++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            5899999999999999999999999999987654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=92.23  E-value=0.21  Score=39.24  Aligned_cols=34  Identities=18%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHH-HcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGG-GNAAGYAARTFV-EHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGg-G~aGl~aA~~L~-~~g~~~~~V~vie~~~   87 (306)
                      ++.|+|.|| |..|..++..|+ +.|+   +|+++.++.
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~---~V~~~~r~~   40 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDM---HITLYGRQL   40 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCC---EEEEEESSH
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCc---eEEEEecCc
Confidence            356999995 999999999999 8998   999998763

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=92.21  E-value=0.2  Score=41.73  Aligned_cols=35  Identities=31%  Similarity=0.517  Sum_probs=31.2

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIG-gG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|.||| .|.-|.+.|..|.+.|+   +|++++++..
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~---~V~~~~~~~~   56 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGY---PISILDREDW   56 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTC---CEEEECTTCG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCC---eEEEEECCcc
Confidence            35899999 99999999999999998   8999987653

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=92.14  E-value=0.18  Score=41.90  Aligned_cols=36  Identities=11%  Similarity=0.339  Sum_probs=31.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ..++++|||+|-+|..+|..|.+.|..  +|+|+++..
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~--~V~v~nR~~  175 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAE--RIDMANRTV  175 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCS--EEEEECSSH
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCC--EEEEEeCCH
Confidence            457899999999999999999999864  799988763

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=92.13  E-value=0.12  Score=44.50  Aligned_cols=34  Identities=15%  Similarity=0.266  Sum_probs=30.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcC-------CCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHG-------MADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g-------~~~~~V~vie~~~~   88 (306)
                      .+|.|||+|.-|.+.|..|++.|       +   +|++++++..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~---~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFEN---EVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCS---CEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCC---eEEEEECChh
Confidence            47999999999999999999998       6   8999998654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=92.13  E-value=0.19  Score=39.35  Aligned_cols=32  Identities=19%  Similarity=0.331  Sum_probs=29.1

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           53 EFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        53 ~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|+|.|| |..|..++..|.++|+   +|+++.++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH---EVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC---EEEEEEcCc
Confidence            6999996 9999999999999998   999998864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=92.12  E-value=0.2  Score=41.72  Aligned_cols=36  Identities=25%  Similarity=0.427  Sum_probs=31.7

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++++|+|.|| |..|..++.+|.+.|+   +|+++++...
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   42 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE---EVTVLDDLRV   42 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC---CEEEECCCSS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC---EEEEEecCCc
Confidence            3578999999 9999999999999998   9999988654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=92.09  E-value=0.2  Score=43.19  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=33.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Cccc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLL  243 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~-~~~~  243 (306)
                      ..+|+|||+|.+|+-.|..|.+.+.+|+++++. +++.
T Consensus        44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vG   81 (376)
T 2e1m_A           44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVG   81 (376)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCB
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccC
Confidence            568999999999999999999999999999988 5543

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=92.09  E-value=0.17  Score=45.00  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=32.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCccc
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLL  243 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~--~v~~~~~~~~~~  243 (306)
                      .+|+|||+|.+|+-.|..|++.+.  +|+++++.+++.
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~G   40 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLG   40 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSB
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            579999999999999999999998  999999876653

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=92.09  E-value=0.17  Score=46.22  Aligned_cols=35  Identities=14%  Similarity=0.237  Sum_probs=32.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      .+++|+|+|..|...|..|.+.|+   +|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~---~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPV---PFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---CEEEEECChHH
Confidence            789999999999999999999998   99999988653

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=92.08  E-value=0.19  Score=43.86  Aligned_cols=36  Identities=19%  Similarity=0.328  Sum_probs=32.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL  242 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~  242 (306)
                      ..+|+|||+|.+|+-.|..|++.+ .+|+++++.+++
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            467999999999999999999999 899999987664

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=92.01  E-value=0.19  Score=41.95  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=29.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|+|||+|..|.+.|..|+..|+ -.+|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~-~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGS-CSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCH
Confidence            79999999999999999999886 33799999763

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=92.01  E-value=0.19  Score=41.90  Aligned_cols=36  Identities=19%  Similarity=0.381  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.+|+|||+|..|..+|+.|+..++ -.+|.++|...
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~-~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGI-ADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-CCEEEEEcCCc
Confidence            4689999999999999999998886 34799998754

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=91.99  E-value=0.55  Score=39.40  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      ...+|+|||+|..|.-+|..|++.+.+|+++ +.
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            4678999999999999999999999999988 53

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=91.99  E-value=0.17  Score=42.45  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      .+.+|.|||.|.-|...|..|++.|+.  +|++++++
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~--~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAI--DMAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCC--EEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCC--eEEEEcCC
Confidence            346899999999999999999999864  79999985

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=91.97  E-value=0.19  Score=41.86  Aligned_cols=35  Identities=20%  Similarity=0.310  Sum_probs=31.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ...++|.|||+|..|..+|+.|...|.   +|+++++.
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~---~V~~~d~~  189 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA---NVKVGARS  189 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC---EEEEEECC
Confidence            345789999999999999999999997   89999875

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=91.96  E-value=0.15  Score=41.89  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ..++++|+|+|-+|.++|+.|.+.|.   +|+|+++..
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~---~v~v~~R~~  152 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQ---NIVLANRTF  152 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            45689999999999999999999995   999998763

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=91.95  E-value=0.19  Score=44.87  Aligned_cols=36  Identities=11%  Similarity=0.303  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+.+|.|||.|.-|...|..|++.|+   +|++++++..
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~---~V~v~dr~~~   38 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGF---VVCAFNRTVS   38 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSTH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            34689999999999999999999998   9999998754

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=91.95  E-value=0.22  Score=43.11  Aligned_cols=36  Identities=19%  Similarity=0.368  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..++|+|||+|..|..++..+.+.|+   +|.++++...
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~---~vi~~d~~~~   48 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGY---KIAVLDPTKN   48 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEeCCCC
Confidence            35689999999999999999999999   9999997654

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=91.91  E-value=0.16  Score=42.93  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEecc
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSK   85 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~   85 (306)
                      +|.|||+|..|...|..|.+.|+   +|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~---~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN---EVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC---EEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC---eEEEEEc
Confidence            69999999999999999999998   9999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	306
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	7e-24
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	8e-24
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	1e-22
d1nhpa2	123	c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus	2e-22
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	2e-17
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	1e-16
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	2e-16
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	4e-14
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	5e-13
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	0.004
d1mo9a2	121	c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co	1e-12
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	6e-12
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	3e-11
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	6e-10
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	6e-10
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	1e-09
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	1e-09
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	8e-09
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	9e-09
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	8e-05
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	4e-08
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	4e-08
d1dxla2	123	c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase	2e-07
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	5e-06
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	9e-05
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	6e-06
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	8e-06
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	2e-05
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	7e-05
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	0.003
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	7e-05
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	4e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	4e-04
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	6e-04
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	0.002
d1kyqa1	150	c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferr	0.003

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 92.3 bits (228), Expect = 7e-24
 Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
                G      Y+R + DA+ +   L    ++VV+GGGYIG+EVAA A+   +  T++ 
Sbjct: 6   ASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLD 65

Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDA 296
               +L+R+  P ++  YE L+++ GV    G  +   E  +D  +V AV  EDG+ + A
Sbjct: 66  TAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPA 125

Query: 297 DTVIL 301
           D VI 
Sbjct: 126 DLVIA 130

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 91.7 bits (227), Expect = 8e-24
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
           + G    VH +R + DA  + + L    ++++VGGG IG+E+AA A    +  +++  + 
Sbjct: 4   LQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP 63

Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300
            L+ R    +LA    + +   GV      S+     G       V L+DG+ I AD V+
Sbjct: 64  RLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVV 117

Query: 301 L 301
           +
Sbjct: 118 V 118

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (220), Expect = 1e-22
 Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV----GWKLD 232
                          R + D  +L     + K + ++GGG++G E+A A          +
Sbjct: 7   IDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTE 66

Query: 233 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 292
              +FPE   + ++    L+    +  ++ GVK +  A ++++          +KL+DG 
Sbjct: 67  VIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV--SSGKLLIKLKDGR 124

Query: 293 TIDADTVIL 301
            ++ D ++ 
Sbjct: 125 KVETDHIVA 133

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 88.4 bits (218), Expect = 2e-22
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 182 GGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239
           G  L  ++ +R    A  L       +   VVV+G GYIG+E A A        T+I   
Sbjct: 3   GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62

Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTV 299
           +  L             +  + N +    G +++  E   DGRV  V + D +  DAD V
Sbjct: 63  DRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLV 119

Query: 300 IL 301
           ++
Sbjct: 120 VV 121

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 74.7 bits (183), Expect = 2e-17
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 185 LPG---VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241
           + G   +  +R + DAD +  S+E + + +++GGG+IG+E+A           +I     
Sbjct: 7   IKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66

Query: 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
            L       L+   + + ++ GVKF   + +   EA  +G      L +   I+    I 
Sbjct: 67  FLG--LDEELSNMIKDMLEETGVKFFLNSELL--EANEEGV-----LTNSGFIEGKVKIC 117

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 72.1 bits (176), Expect = 1e-16
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
           +PGV Y  D     AL       ++V VVG GYIG+E+     G    T +    +  L 
Sbjct: 2   IPGVEYGIDSDGFFAL---PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP 58

Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
                  ++   ++    G +    A  K +   +DG +  ++LEDG +   D +I 
Sbjct: 59  SFDPMI-SETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIW 113

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 72.1 bits (176), Expect = 2e-16
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
           FP      + G+       +      +++++KK+ +VG GYI +E+        +D+ I 
Sbjct: 1   FPP-----VKGIENTISSDEFF----NIKESKKIGIVGSGYIAVELINVIKRLGIDSYIF 51

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              N +L++ F  S+    E   ++N +  V  A +  ++  SD  + ++ L DG   + 
Sbjct: 52  ARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEH 109

Query: 297 -DTVIL 301
            D VI 
Sbjct: 110 FDHVIY 115

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 65.6 bits (159), Expect = 4e-14
 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL 242
           +PG+ +     +A  L    E  ++V+ VGGG+I +E A        K     +     +
Sbjct: 1   IPGIEHCISSNEAFYL---PEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57

Query: 243 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
           + R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D V++
Sbjct: 58  ILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMM 115

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (156), Expect = 5e-13
 Identities = 44/198 (22%), Positives = 67/198 (33%), Gaps = 21/198 (10%)

Query: 48  ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK 107
           A  +  F+++GGG AA  AAR+         R+ IVS++   PY RP L+K   F  D  
Sbjct: 1   APSHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDD-- 57

Query: 108 PARLPGFHTCVGSGGERQTP-------------EWYKEKGIEMIYQDPVTSIDIEKQTLI 154
           P           +G ER                   +  G+ ++    V  +D+    + 
Sbjct: 58  PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVK 117

Query: 155 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKAKK 209
            N G  + Y   ++ATG T         G L              L +         A  
Sbjct: 118 LNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAAC 177

Query: 210 VVVVGGGYIGMEVAAAAV 227
              +  G   +E    AV
Sbjct: 178 FYDIKLGRRRVEHHDHAV 195

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 208 KKVVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENHL 242
              +++GGG      A +  A        I+  +  L
Sbjct: 5   VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL 41

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 61.2 bits (147), Expect = 1e-12
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 194 VADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL 251
           V D   L+  L  E    VVVVGG    +E           T ++     L       + 
Sbjct: 7   VFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNET- 65

Query: 252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV---KLEDGSTIDADTVIL 301
                   ++ G++ + G+++  +E  ++GRV AV          I+ D V L
Sbjct: 66  RAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFL 118

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.7 bits (144), Expect = 6e-12
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 194 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253
              +D L S      K +VVG  Y+ +E A    G  LD T++     L    F   +A 
Sbjct: 7   CISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--FDQDMAN 64

Query: 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-------EDGSTIDADTVIL 301
           +  +  +++G+KF++      +E    G    +K+       E+    + +TV+L
Sbjct: 65  KIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLL 119

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 57.5 bits (138), Expect = 3e-11
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLLQRLFTPSLAQRYEQLYQQN 262
           E  K+ + VGGGYI +E A     +K     +       ++ R F   L ++  +  + N
Sbjct: 16  EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 75

Query: 263 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
           G+      +   +   +DG    V  E G+  D D V+L
Sbjct: 76  GINVRTHENPAKVTKNADGTR-HVVFESGAEADYDVVML 113

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 54.0 bits (129), Expect = 6e-10
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 185 LP-GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243
           LP G   I     +   ++     + +VVVGGGYIG+E+  A        +++     +L
Sbjct: 2   LPLGGPVI----SSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL 57

Query: 244 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
               +   A   E L ++ G+    G S++  E G    +A         ++AD V++
Sbjct: 58  PTYDSELTAPVAESL-KKLGIALHLGHSVEGYENG--CLLANDGKGGQLRLEADRVLV 112

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 53.7 bits (128), Expect = 6e-10
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 245
           P   +   + D+   ++  E  K +VV+GGGYIG+E+  A   +    TI+     +L  
Sbjct: 1   PNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG 60

Query: 246 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTVIL 301
            F   +A   ++  ++ GV+ V  A  K  E   DG  V      +  TIDAD V++
Sbjct: 61  -FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 20/122 (16%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 186 PGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
           PG+      +  +   +S  E  K++ ++GGG IG+E+ +         T++  +   + 
Sbjct: 1   PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ-IG 59

Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTV 299
                 +A+  ++  ++ G+ F     + + +   D  V  + +ED        ++A+ +
Sbjct: 60  ASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVL 119

Query: 300 IL 301
           ++
Sbjct: 120 LV 121

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 15/150 (10%), Positives = 34/150 (22%), Gaps = 19/150 (12%)

Query: 169 ATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 228
             G          G        +            + K   ++     ++   +A     
Sbjct: 4   TDGTNCLTHDPIPGADASLPDQL-TPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLAT 62

Query: 229 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--------- 279
              + TI+   +      FT        +   +  V+ +       +E G          
Sbjct: 63  AGHEVTIVSGVHLANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGD 121

Query: 280 --------DGRVAAVKLEDGSTIDADTVIL 301
                    G            I+ D+++L
Sbjct: 122 GSKRTYRGPGVSPRDANTSHRWIEFDSLVL 151

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 8e-09
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 11/124 (8%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
           +PG            L    E   + V+VG GYI +E+A         T+++   + +L+
Sbjct: 3   IPGASLGITSDGFFQL---EELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR 59

Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDG------STIDAD 297
             F   ++    +  +  GV+ +K + +K ++    G  V+ V    G         D D
Sbjct: 60  S-FDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVD 118

Query: 298 TVIL 301
            ++ 
Sbjct: 119 CLLW 122

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 52.0 bits (123), Expect = 9e-09
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 31/184 (16%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           V++G G A+        + G   G + +V  EA  PY+RP L+K ++   D +  R    
Sbjct: 7   VVLGAGLASVSFVAELRQAG-YQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIR---- 61

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
                        +  +   +E +      S D +  T+  + G+ L YG+L++ATG   
Sbjct: 62  ------------LDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAP 109

Query: 175 SRFPEKI-----------GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA 223
                              G     +      D  AL    +  ++   + G +  +E  
Sbjct: 110 RAVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALG---DVTRQRNPLSGRFERIETW 166

Query: 224 AAAV 227
           + A 
Sbjct: 167 SNAQ 170

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 40.5 bits (93), Expect = 8e-05
 Identities = 9/59 (15%), Positives = 18/59 (30%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266
             VVV+G G   +   A          I    +   +    P L++ +        ++ 
Sbjct: 4   APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 62

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 49.0 bits (116), Expect = 4e-08
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 2/109 (1%)

Query: 194 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253
           + D+   +       K+ V+G G IG+E+ +       + T++   +          +A+
Sbjct: 9   IVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK-FLPAVDEQVAK 67

Query: 254 RYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTVIL 301
             +++  + G+K + GA +   E  +    V  V  E   +   D +I+
Sbjct: 68  EAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIV 116

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 49.1 bits (116), Expect = 4e-08
 Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 3/119 (2%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
           LP +     + D+   ++  E   K++++GGG IG+E+            ++   +  L 
Sbjct: 4   LPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG-LM 62

Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTVIL 301
           +     L + +++  +      +       +E   DG     +  +        D V++
Sbjct: 63  QGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLV 121

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 5/121 (4%)

Query: 185 LPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243
           LPGV    + +  +   ++  E  KK+VV+G GYIG+E+ +       + T++   +  +
Sbjct: 2   LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE-I 60

Query: 244 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTVI 300
                  + +++++  ++ G+KF     +  ++   DG    V+   G   + I+AD V+
Sbjct: 61  VPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVL 120

Query: 301 L 301
           +
Sbjct: 121 V 121

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 43.6 bits (101), Expect = 5e-06
 Identities = 32/183 (17%), Positives = 50/183 (27%), Gaps = 35/183 (19%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL----------FPL 104
           VIVG G      A+   +       + ++ KE    Y +P L+              + L
Sbjct: 4   VIVGNGPGGFELAKQLSQ----TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSL 59

Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 164
           D    R         +    +  +    +  E+ Y   V +       L   SG     G
Sbjct: 60  DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRG 119

Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 224
            LI     T              V+ I D A+              ++ G     ME A 
Sbjct: 120 ILIDDNFRT----------SAKDVYAIGDCAE-----------YSGIIAGTAKAAMEQAR 158

Query: 225 AAV 227
              
Sbjct: 159 VLA 161

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 40.1 bits (92), Expect = 9e-05
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241
           KVV+VG G  G E+A        + T+I  E  
Sbjct: 2   KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV 33

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 44.4 bits (103), Expect = 6e-06
 Identities = 26/224 (11%), Positives = 61/224 (27%), Gaps = 26/224 (11%)

Query: 37  RRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL 96
           RRG+              +IVG G +   AAR  +E G                      
Sbjct: 35  RRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTD--------------- 79

Query: 97  TKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN 156
                   +K    L       G G      ++ + +  +++ ++  + + + ++ +  +
Sbjct: 80  ------TAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTAD 133

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG 216
                    +I+ATG +                   D+     +    +     ++    
Sbjct: 134 DVLQYGADKVIIATGAS-ECTLWNELKARESEWAENDIKGIYLIG---DAEAPRLIADAT 189

Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260
           + G  VA           I +    +            ++  Y+
Sbjct: 190 FTGHRVAREIEEANPQIAIPYKRETIAWGTPHMP-GGNFKIEYK 232

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 43.6 bits (101), Expect = 8e-06
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 207 AKKVVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENHLLQRLFTP 249
            +KVVVVGGG  G   A         ++ T+I P         + 
Sbjct: 2   GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSN 46

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 24/163 (14%), Positives = 41/163 (25%), Gaps = 45/163 (27%)

Query: 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV-------- 227
           R P   G   P V    DV     L        KV ++G G IG + A            
Sbjct: 3   RTPPIDGIDHPKVLSYLDV-----LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ 57

Query: 228 -----------------------------GWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 258
                                               ++  +     +    +    +   
Sbjct: 58  NIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTT 117

Query: 259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
               GVK + G S +  +   DG    +   +   +  D V++
Sbjct: 118 LLSRGVKMIPGVSYQ--KIDDDGLHVVIN-GETQVLAVDNVVI 157

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 40.6 bits (93), Expect = 7e-05
 Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 209 KVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL 242
           KV+V+G  + G E       +    +       + +
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI 37

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 13/98 (13%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           +++G  +    A    +     D  +    K  +  +                   L G 
Sbjct: 4   IVLGSSHGGYEAVEELLNLH-PDAEIQWYEKGDFISFLSAG-----------MQLYLEGK 51

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT 152
              V S     T E  + +G+ +     +T+I  ++  
Sbjct: 52  VKDVNSVRYM-TGEKMESRGVNVFSNTEITAIQPKEHQ 88

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 40.5 bits (93), Expect = 7e-05
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
             VV+VG G  G+EVA        +  I 
Sbjct: 4   DNVVIVGTGLAGVEVAFGLRASGWEGNIR 32

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 13/182 (7%)

Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 1   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKATAE 59

Query: 109 ARLPGFHTCVGSGGERQTPEW---YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGS 165
           +          +   +           +  + +      ++D ++  L T    L+    
Sbjct: 60  SLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCE 119

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
           L  A G                   I  V D          A+    +   ++ +E    
Sbjct: 120 LASAAGLQVDNGIVINEHMQTSDPLIMAVGDC---------ARFHSQLYDRWVRIESVPN 170

Query: 226 AV 227
           A+
Sbjct: 171 AL 172

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 188 VHYIRDVADADALISSLEKAKK----VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243
           +  I +  D   +I ++++        + +GGG  G   +A          I+     L 
Sbjct: 19  IDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG 78

Query: 244 QR 245
             
Sbjct: 79  GS 80

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 11/54 (20%), Positives = 16/54 (29%)

Query: 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP 303
            L Q + +L    G  ++    I  +    D            T  A  VI  P
Sbjct: 237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADP 290

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTII 236
           V++VG G  G   A  +    + T ++
Sbjct: 4   VLIVGSGPAGAAAAIYSARKGIRTGLM 30

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 12/63 (19%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGV 264
           K K+++++GGG +G+      +      T++ P+ H  +   F   +  + +  Y+++  
Sbjct: 12  KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAK 71

Query: 265 KFV 267
           +F+
Sbjct: 72  RFI 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	306
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.86
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.83
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.81
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.78
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.77
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.76
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.76
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.75
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.74
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.73
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.72
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.72
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.7
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.7
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.69
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.69
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.69
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.69
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.63
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.6
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.55
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.52
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.46
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.46
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.46
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.41
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.4
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.4
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.39
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.37
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.36
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.35
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.35
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.33
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.31
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.31
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.3
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.28
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.27
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.25
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.25
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.25
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.24
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.24
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.23
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.22
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.19
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.18
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.18
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.17
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.16
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.16
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.15
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.11
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.1
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.09
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.09
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.09
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.09
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.08
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.08
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.07
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.07
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.07
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.06
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.06
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.03
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.0
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.99
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.96
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.96
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.95
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.9
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.9
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.85
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.83
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.83
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.81
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.8
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.77
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.74
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.74
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.71
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.71
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.7
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.69
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.69
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.68
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.68
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.68
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.67
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.67
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.66
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.66
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.66
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.66
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.62
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.62
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.6
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.58
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.58
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.55
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.55
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.5
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.5
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	98.48
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.46
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.44
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.43
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.43
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.42
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.39
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.39
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.36
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.36
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.35
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.34
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.33
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.33
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.27
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.25
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.2
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.19
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.11
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	98.09
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.09
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.07
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.05
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.01
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.0
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.97
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.97
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.97
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.92
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.88
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.84
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.82
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.79
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.73
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	97.67
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.67
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.65
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.63
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.58
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.56
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.51
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.49
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.47
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.47
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.31
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.3
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.28
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.19
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.05
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.99
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.95
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.94
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.9
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.79
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.73
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.72
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.64
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.64
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.62
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.59
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.56
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.56
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.5
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	96.48
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.45
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.39
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.36
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	96.29
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	96.27
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.26
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.22
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.18
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.18
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.17
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.17
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	96.1
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.08
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.04
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.0
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.89
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.88
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.86
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.79
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.73
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.67
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.63
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.61
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	95.61
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.57
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.57
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.56
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.52
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.51
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	95.44
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.39
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.39
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.37
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.29
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.26
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	95.17
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.15
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	95.11
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.05
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.9
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	94.81
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.8
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.71
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.68
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.53
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.47
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.43
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.35
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.34
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.34
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.31
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.25
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.18
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.16
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	94.07
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.02
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.99
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.96
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	93.93
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.86
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.76
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.73
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	93.71
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	93.48
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.41
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.4
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.38
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.34
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.33
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.31
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.29
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.27
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.27
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	93.13
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	93.12
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.09
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.09
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	93.07
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.05
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	92.98
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.97
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	92.93
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.92
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	92.87
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.86
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	92.8
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	92.62
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.56
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.42
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	92.31
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.19
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	92.13
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.12
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.09
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.09
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.97
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	91.95
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	91.9
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	91.8
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	91.68
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	91.54
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.27
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	91.2
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	90.98
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.94
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.93
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.9
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	90.75
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	90.74
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.24
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.21
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.15
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.13
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.11
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	89.96
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	89.88
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	89.87
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	89.71
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	89.47
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	89.34
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.22
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.05
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	88.82
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	88.75
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	88.63
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	88.56
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	88.54
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	88.13
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.99
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	87.97
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	87.78
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.71
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	87.49
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	87.42
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	87.27
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	87.17
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	86.64
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	86.56
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	86.37
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	86.2
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	86.03
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	85.98
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	85.96
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	85.87
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	85.76
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	85.67
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	85.53
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	85.42
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	84.94
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	84.57
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	83.65
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	83.61
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	83.44
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	83.41
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	83.41
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	83.35
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	83.2
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	83.12
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	83.06
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	83.02
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	82.85
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	82.45
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	82.35
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	82.29
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	82.24
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.15
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	82.14
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	81.95
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	81.93
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	81.74
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	81.56
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	81.56
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	81.51
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	81.45
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	81.44
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	81.34
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	81.13
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	80.91
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	80.73
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	80.73
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	80.73
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	80.54
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	80.48
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	80.45
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.22
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	80.21

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.86  E-value=7e-21  Score=137.13  Aligned_cols=121  Identities=29%  Similarity=0.449  Sum_probs=111.3

Q ss_pred             CCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHH
Q 021871          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  256 (306)
Q Consensus       177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (306)
                      +|++||.+.+ +++++.+.+++.+.+.+..+++++|||+|.+|+|+|..|++.+.+|+++.+.++++++.+++.+.+.+.
T Consensus         1 iP~ipG~~~~-v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~   79 (121)
T d1d7ya2           1 LPTLQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVA   79 (121)
T ss_dssp             CGGGTTCSSC-EEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHH
T ss_pred             CccCCCCCCC-EEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHH
Confidence            3678887765 888899999999999888899999999999999999999999999999999999998878999999999


Q ss_pred             HHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       257 ~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      +.++++||++++++.|+++..+      .+.+++|+++++|.||+|+|
T Consensus        80 ~~l~~~GV~i~~~~~v~~~~~~------~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          80 RYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHTTTCEEEESCCEEEEETT------EEEETTSCEEECSEEEECSC
T ss_pred             HHHHHCCcEEEeCCEEEEEeCC------EEEECCCCEEECCEEEEeeC
Confidence            9999999999999999998842      57889999999999999997

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=1.3e-19  Score=132.90  Aligned_cols=120  Identities=33%  Similarity=0.541  Sum_probs=111.2

Q ss_pred             CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCC
Q 021871          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  264 (306)
Q Consensus       185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  264 (306)
                      .+++.+++.+.+.+.+.+.+..+++++|||+|.+|+|+|..+++.+.+|+++.+.++++++.+++.+.+.+.+.++++||
T Consensus        13 ~~~v~~lr~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV   92 (133)
T d1q1ra2          13 ANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGV   92 (133)
T ss_dssp             STTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTC
T ss_pred             cCCeeEeCCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhccccccc
Confidence            67888999999999999888889999999999999999999999999999999999999887899999999999999999


Q ss_pred             EEEcCceEEEEEeCC-CCcEEEEEeCCCCEEecCEEEEecC
Q 021871          265 KFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       265 ~i~~~~~v~~i~~~~-~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ++++++.|++++... ++.+..+.+++|+++++|.||+|+|
T Consensus        93 ~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          93 DIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             EEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            999999999998643 5567779999999999999999997

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.1e-19  Score=128.60  Aligned_cols=108  Identities=25%  Similarity=0.397  Sum_probs=97.9

Q ss_pred             HHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       195 ~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      .+++.+++....+++++|||+|++|+|+|..+++.+.+||++.+.+++++. +++.+.+.+.+.++++||++++++.|++
T Consensus         9 ~t~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~   87 (116)
T d1gesa2           9 IDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNAEGPQLHTNAIPKA   87 (116)
T ss_dssp             BCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHSCEEECSCCEEE
T ss_pred             CCHHHHhChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-cchhhHHHHHHHHHHCCCEEEeCCEEEE
Confidence            356666666667899999999999999999999999999999999999986 7999999999999999999999999999


Q ss_pred             EEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          275 LEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       275 i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      +...+++.+ .+++++|+++++|.||+|+|
T Consensus        88 i~~~~~~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          88 VVKNTDGSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EEECTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred             EEEcCCcEE-EEEECCCCEEEcCEEEEecC
Confidence            997666666 69999999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.78  E-value=2.5e-18  Score=124.15  Aligned_cols=121  Identities=26%  Similarity=0.341  Sum_probs=106.5

Q ss_pred             CCCCCCCCEEEEccHHHHHHHHHhhh--cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHH
Q 021871          180 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ  257 (306)
Q Consensus       180 ~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (306)
                      +||.+.+++++++.+.+...+.+...  .+++++|+|+|.+|+|+|..+++.+.+||++.+.++++++.+++.+.+.+.+
T Consensus         1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~   80 (123)
T d1nhpa2           1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE   80 (123)
T ss_dssp             STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred             CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence            36777899999998988888877664  4679999999999999999999999999999999999988789999999999


Q ss_pred             HHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEec
Q 021871          258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP  303 (306)
Q Consensus       258 ~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~  303 (306)
                      .++++||++++++.|++++.  ++.+..+ ..+|++++||.||+|.
T Consensus        81 ~l~~~gv~~~~~~~v~~i~~--~~~~~~v-~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          81 EMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHTTTEEEEESCCEEEEEC--SSBCCEE-EESSCEEECSEEEECS
T ss_pred             HhhcCCeEEEeCceEEEEEc--CCCEEEE-EeCCCEEECCEEEEEC
Confidence            99999999999999999984  4555445 5678899999999984

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6e-18  Score=124.65  Aligned_cols=118  Identities=22%  Similarity=0.420  Sum_probs=106.2

Q ss_pred             CCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHh----CCCcEEEEecCCcccccccCHHHHHHHHHHHHH
Q 021871          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  261 (306)
Q Consensus       186 ~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (306)
                      +.+.+++++.+...+.+.....++++|||+|.+|+|+|..|+.    .+.+|+++.+.+.++++.+++.+.+.+.+.+++
T Consensus        16 ~~~~~~r~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~   95 (137)
T d1m6ia2          16 SRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRR   95 (137)
T ss_dssp             HTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHT
T ss_pred             CcEEEEcCHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHh
Confidence            4577888899999988888889999999999999999999964    578999999999999887899999999999999


Q ss_pred             cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       262 ~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +||++++++.|++++. +++.+ .+++++|+++++|.||||+|.
T Consensus        96 ~GV~~~~~~~V~~i~~-~~~~~-~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          96 EGVKVMPNAIVQSVGV-SSGKL-LIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             TTCEEECSCCEEEEEE-ETTEE-EEEETTSCEEEESEEEECCCE
T ss_pred             CCcEEEeCCEEEEEEe-cCCEE-EEEECCCCEEECCEEEEeecC
Confidence            9999999999999996 45555 699999999999999999984

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.76  E-value=5.4e-18  Score=122.31  Aligned_cols=118  Identities=22%  Similarity=0.373  Sum_probs=103.5

Q ss_pred             CCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHH
Q 021871          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  256 (306)
Q Consensus       177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (306)
                      .|++||  .+.+..++++.+.+.+.+.+..+++++|+|+|.+|+|+|..|++.+.+|+++.+++.+++  +++++.+.+.
T Consensus         4 ~p~ipG--~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d~~~~~~~~   79 (122)
T d1xhca2           4 EPQIKG--KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIK   79 (122)
T ss_dssp             CCCSBT--GGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHH
T ss_pred             CcCCCC--ccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CCHHHHHHHH
Confidence            356666  355677788999999988888899999999999999999999999999999999999886  7999999999


Q ss_pred             HHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       257 ~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.++++||+++++++|.+++.  +    ++ +.+++.+++|.||||+|.
T Consensus        80 ~~l~~~GV~~~~~~~v~~~~~--~----~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          80 DMLEETGVKFFLNSELLEANE--E----GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHTTEEEECSCCEEEECS--S----EE-EETTEEEECSCEEEECCE
T ss_pred             HHHHHCCcEEEeCCEEEEEeC--C----EE-EeCCCEEECCEEEEEEEe
Confidence            999999999999999999984  3    34 346679999999999995

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.76  E-value=7.8e-18  Score=120.19  Aligned_cols=105  Identities=26%  Similarity=0.443  Sum_probs=93.1

Q ss_pred             HHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       196 ~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      +++.+++ ++.+++++|||+|.+|+|+|..++..+.+|+++.|.+++++. +++.+.+.+.+.++++||++++++.|+++
T Consensus        12 ts~~~~~-l~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~i   89 (117)
T d1onfa2          12 SSDEFFN-IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEI   89 (117)
T ss_dssp             EHHHHTT-CCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEE
T ss_pred             chhHHhc-cCCCCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc-ccHHHHHHHHHHHHhCCCEEEECCEEEEE
Confidence            4555544 345899999999999999999999999999999999999976 79999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeCCCCEEe-cCEEEEec
Q 021871          276 EAGSDGRVAAVKLEDGSTID-ADTVILLP  303 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G~~i~-~d~vv~a~  303 (306)
                      +..+++.+ .+++++|+.++ +|.||||.
T Consensus        90 ~~~~~~~~-~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          90 KKVSDKNL-SIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             EESSTTCE-EEEETTSCEEEEESEEEECC
T ss_pred             EEcCCCeE-EEEECCCCEEEeCCEEEEeC
Confidence            97667765 69999998875 79999984

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.75  E-value=7.8e-18  Score=120.69  Aligned_cols=108  Identities=22%  Similarity=0.369  Sum_probs=94.4

Q ss_pred             HHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceE
Q 021871          196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI  272 (306)
Q Consensus       196 ~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v  272 (306)
                      +++.+++....+++++|||+|.+|+|+|..+..+   +.+|+++.+.+.+++. +++++.+.+.+.++++||++++++.|
T Consensus         7 ts~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~GI~v~~~~~v   85 (117)
T d1feca2           7 TSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENP   85 (117)
T ss_dssp             CHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCE
T ss_pred             chHHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-ccchhhHHHHHHHhhCcEEEEcCCEE
Confidence            4555555445689999999999999999877654   7799999999999986 79999999999999999999999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          273 KNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       273 ~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ++|+.++++.. .+.+++|+++++|.||||+|.
T Consensus        86 ~~i~~~~~g~~-~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          86 AKVTKNADGTR-HVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             EEEEECTTSCE-EEEETTSCEEEESEEEECSCE
T ss_pred             EEEEECCCCEE-EEEECCCCEEEcCEEEEecCC
Confidence            99997566654 699999999999999999984

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.74  E-value=8.6e-18  Score=120.32  Aligned_cols=107  Identities=23%  Similarity=0.433  Sum_probs=93.2

Q ss_pred             HHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCC---CcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCce
Q 021871          195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS  271 (306)
Q Consensus       195 ~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  271 (306)
                      .+++.++.....+++++|||+|++|+|+|..+...+   .+|+++.+++++++. +++.+.+.+.+.++++||++++++.
T Consensus         8 ~t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-~d~~~~~~l~~~l~~~GV~v~~~~~   86 (117)
T d1aoga2           8 ISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGIQILTKEN   86 (117)
T ss_dssp             BCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESCC
T ss_pred             EcHHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-cchHHHHHHHHHHHhcCcEEEcCCE
Confidence            355666655556899999999999999998877654   579999999999986 7999999999999999999999999


Q ss_pred             EEEEEeCCCCcEEEEEeCCCCEEecCEEEEec
Q 021871          272 IKNLEAGSDGRVAAVKLEDGSTIDADTVILLP  303 (306)
Q Consensus       272 v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~  303 (306)
                      |++++.++++.+ .+++++|++++||.||||.
T Consensus        87 v~~ie~~~~~~~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          87 PAKVELNADGSK-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEEEEECTTSCE-EEEETTSCEEEESEEEECS
T ss_pred             EEEEEEcCCCeE-EEEECCCcEEEeCEEEEeC
Confidence            999997667766 5999999999999999984

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=3.5e-17  Score=117.78  Aligned_cols=106  Identities=17%  Similarity=0.354  Sum_probs=92.9

Q ss_pred             HHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       196 ~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      +++.+++....+++++|||+|++|+|+|..+++.|.+||++.+.+++++. +++++.+.+.+.++++||+++++++|+++
T Consensus        12 ts~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~i~~~~~v~~v   90 (122)
T d1v59a2          12 SSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISA   90 (122)
T ss_dssp             CHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEE
T ss_pred             ehHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccceEEeCCEEEEE
Confidence            45555555556899999999999999999999999999999999999987 79999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeCCC-----CEEecCEEEEe
Q 021871          276 EAGSDGRVAAVKLEDG-----STIDADTVILL  302 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G-----~~i~~d~vv~a  302 (306)
                      +..+++....+++.++     +++++|.|++|
T Consensus        91 ~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          91 KRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            9877776666766554     37999999986

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.72  E-value=8.1e-18  Score=121.42  Aligned_cols=110  Identities=15%  Similarity=0.213  Sum_probs=95.7

Q ss_pred             HHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       195 ~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      .+++..++....+++++|||+|.+|+|+|..++..|.+|+++.+.+++++. +++++.+.+.+.++++||++++++.|.+
T Consensus        14 ~ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-~d~~~~~~l~~~l~~~gv~~~~~~~v~~   92 (125)
T d1ojta2          14 IDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNEYRFDNIMVNTKTVA   92 (125)
T ss_dssp             ECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHGGGEEEEECSCEEEE
T ss_pred             EcHHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-chhhHHHHHHHHHHHcCcccccCcEEEE
Confidence            456666665667899999999999999999999999999999999999986 7999999999999999999999999999


Q ss_pred             EEeCCCCcEEEEEeCCC--CEEecCEEEEecCC
Q 021871          275 LEAGSDGRVAAVKLEDG--STIDADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~  305 (306)
                      ++.++++..+.++..+|  +++++|.|++|+|.
T Consensus        93 v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          93 VEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             EEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            99866665444554544  37999999999984

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.72  E-value=4e-17  Score=117.01  Aligned_cols=106  Identities=20%  Similarity=0.317  Sum_probs=92.2

Q ss_pred             HHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       196 ~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      +++..++....+++++|||+|.+|+|+|..++..|.+|+++.+.+++++. +++++.+.+.+.++++||+++++++|+++
T Consensus        11 ~s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i   89 (119)
T d3lada2          11 DSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTKQGLKILLGARVTGT   89 (119)
T ss_dssp             EHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCEEEEE
T ss_pred             chhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-ccchhHHHHHHHHHhcCceeecCcEEEEE
Confidence            56666665567899999999999999999999999999999999999986 79999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeCCC---CEEecCEEEEecC
Q 021871          276 EAGSDGRVAAVKLEDG---STIDADTVILLPY  304 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G---~~i~~d~vv~a~g  304 (306)
                      +.++++..  +++.++   +++++|.||+|+|
T Consensus        90 ~~~~~~v~--v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          90 EVKNKQVT--VKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EECSSCEE--EEEESSSEEEEEEESEEEECSC
T ss_pred             EEeCCEEE--EEEEECCCCEEEECCEEEEeeC
Confidence            98555543  444443   4799999999997

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.6e-18  Score=132.69  Aligned_cols=145  Identities=17%  Similarity=0.190  Sum_probs=101.1

Q ss_pred             ccCCccCccccccccceeeecccCCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCC
Q 021871           25 HRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL  104 (306)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~  104 (306)
                      .+..|..||+..++...+..  +...+++|+|||||||||+||+.|+++|+   +|+|+|+.+..+-        .+...
T Consensus        19 ~~~~C~~Np~~g~e~~~~~~--~~~~~k~V~IIGaGPAGL~AA~~la~~G~---~Vtl~E~~~~~GG--------~l~~~   85 (179)
T d1ps9a3          19 KVTSCLVNPRACHETKMPIL--PAVQKKNLAVVGAGPAGLAFAINAAARGH---QVTLFDAHSEIGG--------QFNIA   85 (179)
T ss_dssp             CCCCCSSCTTTTCTTTSCCC--SCSSCCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSCT--------THHHH
T ss_pred             CeeEEeeCccccCccccccC--CCCCCcEEEEECccHHHHHHHHHHHhhcc---ceEEEeccCccCc--------eEEEE
Confidence            46679999999888776543  34567899999999999999999999999   9999999877532        11100


Q ss_pred             CCCCCCCCCcccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC
Q 021871          105 DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY  184 (306)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~  184 (306)
                       ........+.+.     ..++.+.+++.+++++++++|+.   +         ....||.+|+|+|..++.++      
T Consensus        86 -~~~p~~~~~~~~-----~~~~~~~~~~~gV~i~l~~~Vt~---~---------~~~~~d~vilAtG~~~~~~~------  141 (179)
T d1ps9a3          86 -KQIPGKEEFYET-----LRYYRRMIEVTGVTLKLNHTVTA---D---------QLQAFDETILASGIPNRALA------  141 (179)
T ss_dssp             -TTSTTCTTHHHH-----HHHHHHHHHHHTCEEEESCCCCS---S---------SSCCSSEEEECCCEECCTTH------
T ss_pred             -EeCcccchHHHH-----HHHHHHhhhcCCeEEEeCCEEcc---c---------ccccceeEEEeecCCCcccc------
Confidence             011111222221     24566667788999999987632   1         13588999999998765321      


Q ss_pred             CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHH
Q 021871          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEV  222 (306)
Q Consensus       185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~  222 (306)
                      .+                ....++++.|+|++.++.++
T Consensus       142 ~p----------------g~~~g~~v~vigggd~a~~~  163 (179)
T d1ps9a3         142 QP----------------LIDSGKTVHLIGGCDVAMEL  163 (179)
T ss_dssp             HH----------------HHTTTCCEEECGGGTCCSSC
T ss_pred             cc----------------hhccCCEEEEECCcHhhhhc
Confidence            11                12358899999999887765

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.70  E-value=7.3e-17  Score=116.33  Aligned_cols=107  Identities=21%  Similarity=0.420  Sum_probs=93.5

Q ss_pred             HHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       196 ~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      +++.+++....+++++|||+|.+|+|+|..++..|.+||++.|++++++. +++.+.+.+.+.++++||++++++.|.++
T Consensus        14 ts~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i   92 (123)
T d1dxla2          14 SSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKLKTKVVGV   92 (123)
T ss_dssp             CHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHSSCCEECSEEEEEE
T ss_pred             eHHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-hhhcchhhhhhhhhcccceEEcCCceEEE
Confidence            56666665667899999999999999999999999999999999999986 89999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeCCC---CEEecCEEEEec
Q 021871          276 EAGSDGRVAAVKLEDG---STIDADTVILLP  303 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G---~~i~~d~vv~a~  303 (306)
                      +.++++..+.++..++   +++++|.|++|.
T Consensus        93 ~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          93 DTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             ECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             EEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            9867776656666544   358999999873

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.69  E-value=4.3e-17  Score=116.28  Aligned_cols=106  Identities=20%  Similarity=0.327  Sum_probs=88.1

Q ss_pred             HHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       196 ~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      +++.....-..+++++|+|+|..|+|+|..+++.+.+||++.+.+++++. +++++.+.+.+.++++||+++++++|+++
T Consensus        10 ~s~~~l~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i   88 (115)
T d1lvla2          10 SSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGY   88 (115)
T ss_dssp             CHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEE
T ss_pred             CChHHhCcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEcCcEEEEE
Confidence            44555444456899999999999999999999999999999999999987 79999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          276 EAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      +  ++..+......+++++++|.||+|+|
T Consensus        89 ~--~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          89 E--NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             E--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             c--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            7  34333222222235799999999998

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.69  E-value=3.6e-16  Score=112.64  Aligned_cols=98  Identities=21%  Similarity=0.240  Sum_probs=87.5

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~  285 (306)
                      .+++++|||+|++|+|+|..++..+.+++++.+.+.+++. +++.+.+.+.+.++++||++++++.+++++.++++.+..
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~-~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~   99 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQA   99 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc-cccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEE
Confidence            4689999999999999999999999999999999999875 899999999999999999999999999999877776544


Q ss_pred             EE---eCCCCEEecCEEEEecC
Q 021871          286 VK---LEDGSTIDADTVILLPY  304 (306)
Q Consensus       286 v~---~~~G~~i~~d~vv~a~g  304 (306)
                      +.   ..+++++++|.||+|+|
T Consensus       100 ~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2         100 VVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEEETTEEEEEECSCEEECCC
T ss_pred             EEEEeCCCCEEEEcCEEEEEEC
Confidence            43   34456799999999997

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.1e-16  Score=114.28  Aligned_cols=109  Identities=20%  Similarity=0.330  Sum_probs=91.7

Q ss_pred             HHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       195 ~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      .+++.+++....+++++|||+|.+|+|+|..+++.+.+|+++.|++++++. +++++.+.+.+.++++||+++++++|++
T Consensus        10 ~ts~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~Gv~i~~~~~v~~   88 (125)
T d3grsa2          10 ITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVLKFSQVKE   88 (125)
T ss_dssp             BCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred             CCHHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            355666555556899999999999999999999999999999999999986 7999999999999999999999999999


Q ss_pred             EEeCCCCcEEE-EEeCCCC------EEecCEEEEecC
Q 021871          275 LEAGSDGRVAA-VKLEDGS------TIDADTVILLPY  304 (306)
Q Consensus       275 i~~~~~~~v~~-v~~~~G~------~i~~d~vv~a~g  304 (306)
                      |+.++++.... +....|.      .+++|.||||+|
T Consensus        89 i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          89 VKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            98766664322 3334442      578999999997

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.69  E-value=1.1e-16  Score=114.55  Aligned_cols=106  Identities=31%  Similarity=0.470  Sum_probs=90.5

Q ss_pred             HHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       195 ~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      ++++.+......+++++|||+|++|+|+|..++..|.+||++.+.+++++. +++++.+.+.+.++++||++++++.|++
T Consensus        10 ~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~   88 (117)
T d1ebda2          10 LDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKG   88 (117)
T ss_dssp             ECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESEEEEE
T ss_pred             EChhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHHHHHHhcCCEEEcCCEEEE
Confidence            466777666667899999999999999999999999999999999999986 8999999999999999999999999999


Q ss_pred             EEeCCCCcEEEEEeCCC--CEEecCEEEEe
Q 021871          275 LEAGSDGRVAAVKLEDG--STIDADTVILL  302 (306)
Q Consensus       275 i~~~~~~~v~~v~~~~G--~~i~~d~vv~a  302 (306)
                      ++.++++....+ ..+|  +++++|.||++
T Consensus        89 i~~~~~~~~v~~-~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          89 AEEREDGVTVTY-EANGETKTIDADYVLVT  117 (117)
T ss_dssp             EEEETTEEEEEE-EETTEEEEEEESEEEEC
T ss_pred             EEEcCCEEEEEE-EeCCCEEEEEeEEEEEC
Confidence            997555543222 2334  46999999974

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.63  E-value=5.5e-20  Score=148.76  Aligned_cols=194  Identities=10%  Similarity=0.043  Sum_probs=107.1

Q ss_pred             cCCccCccccccccceee---ecccCCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcccccccc
Q 021871           26 RIRHSSAKNFQRRGFVVA---YSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF  102 (306)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~  102 (306)
                      ...|..||+..++...-.   ........++|+|||||++||++|..|+++|+   +|+|+|+++..+..        +.
T Consensus        21 ~~~c~~n~~~~~e~~~~~~p~~~~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~---~v~l~E~~~~~GG~--------~~   89 (233)
T d1djqa3          21 PMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGY---TVHLTDTAEKIGGH--------LN   89 (233)
T ss_dssp             CCCCSSCTTTTTHHHHCCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTTTT--------HH
T ss_pred             eeeeecCcccChHHhcCCCCCccCcccCCceEEEEcccHHHHHHHHHHHHhcc---ceeeEeeccccCCc--------cc
Confidence            456888888665533321   11223457899999999999999999999998   99999998775321        11


Q ss_pred             CCCCCCCCCCCcccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCC
Q 021871          103 PLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG  182 (306)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~  182 (306)
                      .... ....+.+...     .......+.+....   +..+ .++...+.+...+...+.||++|+|||..+..++ .++
T Consensus        90 ~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~-~~~  158 (233)
T d1djqa3          90 QVAA-LPGLGEWSYH-----RDYRETQITKLLKK---NKES-QLALGQKPMTADDVLQYGADKVIIATGASECTLW-NEL  158 (233)
T ss_dssp             HHTT-STTCGGGGHH-----HHHHHHHHHHHHTT---CTTC-EEECSCCCCCHHHHHTSCCSEEEECCCEECCHHH-HHH
T ss_pred             cccc-cceeeccccc-----chhHHHHHHHHhhc---ceee-eeecccccccchhhhhhccceeeeccCCCccccc-ccc
Confidence            0000 0011111100     00111111111110   0011 1112222222222235789999999998765321 111


Q ss_pred             CCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc
Q 021871          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  244 (306)
Q Consensus       183 ~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~  244 (306)
                      ...+......   ...........+++++|+|+|.+|+|+|.+|++.+.+|+++.|.+.+..
T Consensus       159 ~~~~~~~~~~---~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~  217 (233)
T d1djqa3         159 KARESEWAEN---DIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW  217 (233)
T ss_dssp             HHTTHHHHHT---TCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred             cccccccchh---hhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence            0011100000   0000000012467899999999999999999999999999999887654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=6.1e-15  Score=105.79  Aligned_cols=107  Identities=25%  Similarity=0.359  Sum_probs=87.1

Q ss_pred             HHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       196 ~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      +++.+++.-..+++++|||+|++|+|+|..+++.|.+|+++.+. .+++. +++.+.+.+.+.++++||++++++.|+++
T Consensus         9 tsd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~~-~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~   86 (122)
T d1h6va2           9 SSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDMANKIGEHMEEHGIKFIRQFVPTKI   86 (122)
T ss_dssp             CHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSTT-SCHHHHHHHHHHHHHTTEEEEESCEEEEE
T ss_pred             cchHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhcc-CCHHHHHHHHHHHHHCCCEEEECCEEEEE
Confidence            56666665667899999999999999999999999999999875 56765 79999999999999999999999999988


Q ss_pred             EeCCCC--cEEEEEeCCC---C--EEecCEEEEecC
Q 021871          276 EAGSDG--RVAAVKLEDG---S--TIDADTVILLPY  304 (306)
Q Consensus       276 ~~~~~~--~v~~v~~~~G---~--~i~~d~vv~a~g  304 (306)
                      +..+++  ....+...++   +  .+++|.|++|+|
T Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          87 EQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            753332  2224544433   2  467999999997

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.4e-15  Score=119.25  Aligned_cols=126  Identities=26%  Similarity=0.391  Sum_probs=89.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCC------CCCcccc-c--C-
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR------LPGFHTC-V--G-  119 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~--~-  119 (306)
                      ..+++||||||++|+.+|..|++++. +.+|+++++++...|.++.+...++.........      ....... .  . 
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~-~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP   81 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCC-CCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCCh
Confidence            45789999999999999999999985 6789999999998888776654332211100000      0000000 0  0 


Q ss_pred             -CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          120 -SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       120 -~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                       ..........+++.+++++++++|.+++.+.+++.+++|+.+.||.||+|+|..+..
T Consensus        82 ~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~  139 (213)
T d1m6ia1          82 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPN  139 (213)
T ss_dssp             GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEEC
T ss_pred             hhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecch
Confidence             001122234456789999999999999999999999999999999999999987653

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.52  E-value=2.8e-13  Score=111.75  Aligned_cols=54  Identities=19%  Similarity=0.363  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      +..+...+.+.+++.|++++.+++|++|+. +++.+ .|++++| .+.+|.||+|+|
T Consensus       149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~-~~~~v-~V~t~~g-~i~a~~VViAaG  202 (281)
T d2gf3a1         149 SENCIRAYRELAEARGAKVLTHTRVEDFDI-SPDSV-KIETANG-SYTADKLIVSMG  202 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-CSSCE-EEEETTE-EEEEEEEEECCG
T ss_pred             ccccccccccccccccccccCCcEEEEEEE-ECCEE-EEEECCc-EEEcCEEEECCC
Confidence            567888899999999999999999999997 45565 6999988 799999999997

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.46  E-value=1.2e-13  Score=113.65  Aligned_cols=55  Identities=13%  Similarity=0.163  Sum_probs=46.4

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|+.|+. +++ +.+|++++| ++.||.||+|+|.
T Consensus       150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~-~~~V~t~~g-~i~a~~vV~AaG~  204 (276)
T d1ryia1         150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVER-DGE-ALFIKTPSG-DVWANHVVVASGV  204 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCCCEEEC-SSS-SEEEEETTE-EEEEEEEEECCGG
T ss_pred             cccchhHHHHHHHHcCCEEecceEEEeEEe-ecc-eEEEecCCe-EEEcCEEEECCCc
Confidence            456778888899999999999999999995 333 447999988 8999999999983

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.46  E-value=1.5e-13  Score=103.21  Aligned_cols=129  Identities=11%  Similarity=0.036  Sum_probs=96.0

Q ss_pred             EeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcC-CeEEEE--cCCHHHHHHHHHHHhCCCcEEEEecCCcccc
Q 021871          168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKVVVV--GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  244 (306)
Q Consensus       168 la~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~v~vi--G~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~  244 (306)
                      .|||+.|..++++|+.+.++.+.+    +++++++....+ +.++|+  |+|++|+++|..|++.|.+||++.+.+.+++
T Consensus         3 ~atG~~~~~~~pipG~~~~~~~v~----t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~   78 (156)
T d1djqa2           3 NTDGTNCLTHDPIPGADASLPDQL----TPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANY   78 (156)
T ss_dssp             CSSCCCTTTSSCCTTCCTTSTTEE----CHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTH
T ss_pred             cCCCCCCCCCCCCCCccCCCCEEE----CHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence            478999886656777655544333    344555444444 445554  9999999999999999999999999998887


Q ss_pred             cccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---------------------CCCCEEecCEEEEec
Q 021871          245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---------------------EDGSTIDADTVILLP  303 (306)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---------------------~~G~~i~~d~vv~a~  303 (306)
                      . +++.....+.+.+++.||++++++.|.+|+.  ++..  +..                     .+...+++|.+|+++
T Consensus        79 ~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~--l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D~vilvt  153 (156)
T d1djqa2          79 M-HFTLEYPNMMRRLHELHVEELGDHFCSRIEP--GRME--IYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVT  153 (156)
T ss_dssp             H-HHTTCHHHHHHHHHHTTCEEEETEEEEEEET--TEEE--EEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEES
T ss_pred             c-cchhHHHHHHHHHhhccceEEeccEEEEecC--cceE--EEeeeccccceeeeeeEEEecccCCccCcEecceEEEEe
Confidence            6 5666778899999999999999999999994  3221  211                     111258999999999


Q ss_pred             CC
Q 021871          304 YD  305 (306)
Q Consensus       304 g~  305 (306)
                      |.
T Consensus       154 gR  155 (156)
T d1djqa2         154 GR  155 (156)
T ss_dssp             CE
T ss_pred             cC
Confidence            86

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.46  E-value=5.5e-14  Score=114.14  Aligned_cols=123  Identities=18%  Similarity=0.241  Sum_probs=76.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC-------CCCcccccc----c-cCC-CCCC--------
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTKGY----L-FPL-DKKP--------  108 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-------~~~~~~~~~----~-~~~-~~~~--------  108 (306)
                      +++||+|||||++||+||+.|+++|+   +|+|+|+.+..+-       .........    + ... ....        
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~---~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGA---NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSI   77 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhh
Confidence            36899999999999999999999998   9999999876420       000000000    0 000 0000        


Q ss_pred             ------------CCCCCccc----c-cCC----CCCcCChhHHhhcCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecC
Q 021871          109 ------------ARLPGFHT----C-VGS----GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYG  164 (306)
Q Consensus       109 ------------~~~~~~~~----~-~~~----~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~  164 (306)
                                  ..++....    . ...    .....+...+++.+++++++++|..+..++.   .+.+++++.+++|
T Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~  157 (251)
T d2i0za1          78 FNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETN  157 (251)
T ss_dssp             SCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECS
T ss_pred             hhhHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecC
Confidence                        00000000    0 000    0011233445668999999999999986544   4677888899999


Q ss_pred             cEEEeeCCCCc
Q 021871          165 SLIVATGCTAS  175 (306)
Q Consensus       165 ~lila~G~~~~  175 (306)
                      +||+|+|....
T Consensus       158 ~vI~AtGg~S~  168 (251)
T d2i0za1         158 HVVIAVGGKSV  168 (251)
T ss_dssp             CEEECCCCSSS
T ss_pred             eEEEccCCccc
Confidence            99999997653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.41  E-value=8.2e-13  Score=110.23  Aligned_cols=56  Identities=27%  Similarity=0.348  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..+...+.+.+++.|++++.+++|+++.. +++++.+|.+++| +++||.||+|+|.
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~-~~~~v~~V~T~~g-~i~a~~VV~aaG~  202 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGF  202 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGG
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEE-eCCEEEEEeccce-eEECCEEEEecch
Confidence            567788888999999999999999999997 5778878999988 8999999999983

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=5.3e-13  Score=94.69  Aligned_cols=94  Identities=17%  Similarity=0.127  Sum_probs=75.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      .+++++|||||+.|+.+|..|++.|.   +|+++|+.+.....         +  +      +        .....+.+.
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~---~Vtlve~~~~~l~~---------~--d------~--------~~~~~~~~~   71 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGA---KTHLFEMFDAPLPS---------F--D------P--------MISETLVEV   71 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSSTT---------S--C------H--------HHHHHHHHH
T ss_pred             CCCEEEEECCChhhHHHHHHhhcccc---EEEEEeecchhhhh---------c--c------h--------hhHHHHHHH
Confidence            35789999999999999999999998   99999998663100         0  0      0        012456777


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCcEEEeeC
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATG  171 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~lila~G  171 (306)
                      +++.|+++++++.+..+.....   .+.+++|+.+.+|.+++|+|
T Consensus        72 l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          72 MNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            8889999999999999876532   67888999999999999998

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=2.5e-12  Score=92.32  Aligned_cols=110  Identities=16%  Similarity=0.209  Sum_probs=89.9

Q ss_pred             CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCC
Q 021871          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  264 (306)
Q Consensus       185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  264 (306)
                      .+|+.|+.      .+...+.++++|+|||+|.+|+|.|.+|++++.+|+++.|.+.+..   ++.+.+.+.+..+..++
T Consensus        11 gkgV~yca------~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~---~~~~~~~~~~~~~~~~i   81 (126)
T d1trba2          11 GRGVSACA------TSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA---EKILIKRLMDKVENGNI   81 (126)
T ss_dssp             TTTEESCH------HHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC---CHHHHHHHHHHHHTSSE
T ss_pred             CCCEEEEE------ecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccc---hhHHHHHHHHhhcccce
Confidence            45666542      2233567899999999999999999999999999999999988654   77788888888888999


Q ss_pred             EEEcCceEEEEEeCCCCcEEEEEeCCC------CEEecCEEEEecC
Q 021871          265 KFVKGASIKNLEAGSDGRVAAVKLEDG------STIDADTVILLPY  304 (306)
Q Consensus       265 ~i~~~~~v~~i~~~~~~~v~~v~~~~G------~~i~~d~vv~a~g  304 (306)
                      .++.++++.++.. ++..+.+|++.+.      +++++|.++++.|
T Consensus        82 ~~~~~~~v~~i~G-~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          82 ILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEECSCEEEEEEE-CSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             eEecceEEEEEEC-CCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            9999999999995 4555777887653      3599999999986

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.39  E-value=2.1e-13  Score=110.83  Aligned_cols=122  Identities=16%  Similarity=0.175  Sum_probs=74.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC-------CCCccccccccCCCCCCCCCCCcc-c-----
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTKGYLFPLDKKPARLPGFH-T-----  116 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~-----  116 (306)
                      +.+||+|||||+|||.||++|+++|+   +|+|+|+.+..+-       .++.+.+....+.. .....+.|. .     
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~G~---~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~-~~~~~~~~~~~~l~~~   78 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKLGK---SVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAH-YLSQNPHFVKSALARY   78 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGG-EECSCTTSTHHHHHHS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCCCCceEecCCccccccCcccCchh-hhccChHHHHHHhhhh
Confidence            45899999999999999999999998   9999999876430       00100000000000 000000000 0     


Q ss_pred             -----------------------ccCCC----CCcCChhHHhhcCeEEEeCCcEEEEeCCCC-----EEEcCCCcEEecC
Q 021871          117 -----------------------CVGSG----GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-----TLITNSGKLLKYG  164 (306)
Q Consensus       117 -----------------------~~~~~----~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~-----~v~~~~g~~~~~~  164 (306)
                                             .....    ....+...+++.+++++++++|.++.....     .+...++..++++
T Consensus        79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~  158 (253)
T d2gqfa1          79 TNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCK  158 (253)
T ss_dssp             CHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEES
T ss_pred             cccchhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeC
Confidence                                   00000    011233445667999999999999875432     2444567789999


Q ss_pred             cEEEeeCCCCc
Q 021871          165 SLIVATGCTAS  175 (306)
Q Consensus       165 ~lila~G~~~~  175 (306)
                      +||+|||....
T Consensus       159 ~VIiAtGG~S~  169 (253)
T d2gqfa1         159 NLIVATGGLSM  169 (253)
T ss_dssp             EEEECCCCSSC
T ss_pred             EEEEcCCcccc
Confidence            99999998754

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.36  E-value=2.5e-13  Score=112.77  Aligned_cols=122  Identities=16%  Similarity=0.190  Sum_probs=78.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--C--C-CCcccc---cccc--CCCCCC---CCCCCcc
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--Y--E-RPALTK---GYLF--PLDKKP---ARLPGFH  115 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~--~-~~~~~~---~~~~--~~~~~~---~~~~~~~  115 (306)
                      .+..||+|||||++||++|++|++.|+   +|+|+|+.+..+  |  . .+....   ....  ......   .+.+.+ 
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~---~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~-   80 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGR---SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTER-   80 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBS-
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccc-
Confidence            345799999999999999999999998   999999987764  1  1 011000   0000  000000   000000 


Q ss_pred             cccCCCCCcCChhHHhhcCe--EEEeCCcEEEEeCC----CCEEEcCCCcEEecCcEEEeeCCCC
Q 021871          116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIE----KQTLITNSGKLLKYGSLIVATGCTA  174 (306)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~v~~~----~~~v~~~~g~~~~~~~lila~G~~~  174 (306)
                      .....+...++..+.+++++  +++++++|.++..+    .+.|.+.++..+++|++|+|+|...
T Consensus        81 ~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls  145 (298)
T d1w4xa1          81 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLS  145 (298)
T ss_dssp             SCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred             cCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccc
Confidence            00011123456667777887  58999999999642    2488898999999999999999643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.35  E-value=2.7e-12  Score=91.52  Aligned_cols=92  Identities=17%  Similarity=0.269  Sum_probs=73.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|+++|.   +|+++|+.+.....        .++                ......+.+.+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~~l~~--------~~~----------------~~~~~~~~~~l   82 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV---HVSLVETQPRLMSR--------AAP----------------ATLADFVARYH   82 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT--------TSC----------------HHHHHHHHHHH
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc---eEEEEeeccccccc--------cCC----------------HHHHHHHHHHH
Confidence            4799999999999999999999998   99999998763110        000                00124556778


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeC
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG  171 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G  171 (306)
                      ++.|+++++++.|.++..  ..+.+++|+.+.+|.+++|+|
T Consensus        83 ~~~GV~i~~~~~v~~~~~--~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          83 AAQGVDLRFERSVTGSVD--GVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HTTTCEEEESCCEEEEET--TEEEETTSCEEECSEEEECSC
T ss_pred             HHCCcEEEeCCEEEEEeC--CEEEECCCCEEECCEEEEeeC
Confidence            889999999999987764  468889999999999999998

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.6e-13  Score=113.53  Aligned_cols=50  Identities=16%  Similarity=0.100  Sum_probs=40.9

Q ss_pred             HHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       253 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ....+.+++.|++++++++|++|.. .++.+ .|++.+|+++++|.||+|++
T Consensus       211 ~~~~~l~~~~g~~i~~~~~v~~I~~-~~~~v-~v~~~~g~~~~ad~vI~a~p  260 (383)
T d2v5za1         211 QVSERIMDLLGDRVKLERPVIYIDQ-TRENV-LVETLNHEMYEAKYVISAIP  260 (383)
T ss_dssp             HHHHHHHHHHGGGEEESCCEEEEEC-SSSSE-EEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHHHHcCCeEEecCcceEEEe-cCCeE-EEEECCCCEEECCEEEECCC
Confidence            3344556678999999999999997 45555 59999999999999999976

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.33  E-value=1.8e-12  Score=94.19  Aligned_cols=95  Identities=16%  Similarity=0.250  Sum_probs=74.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++++|||||+.|+.+|..|++.|.   +|+++|+.+...-.       . ++                ......+.+.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~---~Vtvie~~~~~l~~-------~-~~----------------~~~~~~~~~~   86 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANM---HVTLLDTAARVLER-------V-TA----------------PPVSAFYEHL   86 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTTTT-------T-SC----------------HHHHHHHHHH
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCc---ceeeeeeccccccc-------c-cc----------------hhhhhhhhhc
Confidence            35799999999999999999999998   99999998763110       0 00                0001345677


Q ss_pred             HhhcCeEEEeCCcEEEEeCCC-----CEEEcCCCcEEecCcEEEeeC
Q 021871          130 YKEKGIEMIYQDPVTSIDIEK-----QTLITNSGKLLKYGSLIVATG  171 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~-----~~v~~~~g~~~~~~~lila~G  171 (306)
                      +++.|+++++++++..++...     ..+.+++|+.+.+|.+++|+|
T Consensus        87 ~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          87 HREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            888999999999999987532     247789999999999999998

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.31  E-value=4e-12  Score=97.90  Aligned_cols=108  Identities=27%  Similarity=0.467  Sum_probs=79.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +.+|+|||||++|+.+|..|++.|. +.++++++++....|.++.+...+......                ........
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~-~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~----------------~~~~~~~~   65 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDA----------------EKIRLDCK   65 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTTHHHHCCG----------------GGSBCCGG
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCC-ceEEEEEecccccchhhHHHhhhhhhhhhh----------------hhHHHHHh
Confidence            4579999999999999999999996 556777776665545443332211111000                01122334


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ...+++++++.++..++.+...+.+++|+.+.||++++|+|..|.
T Consensus        66 ~~~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~  110 (183)
T d1d7ya1          66 RAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPR  110 (183)
T ss_dssp             GSTTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred             hcCCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEcc
Confidence            567899999999999999989999999999999999999998775

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.31  E-value=4.7e-12  Score=98.78  Aligned_cols=110  Identities=16%  Similarity=0.275  Sum_probs=79.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhh
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (306)
                      +|+|||||++|+.+|..|++.+ ++.+|+++++++...|..+..+. ++.........           ........+++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~-~~~~V~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~-----------~~~~~~~~l~~   68 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLH-PDAEIQWYEKGDFISFLSAGMQL-YLEGKVKDVNS-----------VRYMTGEKMES   68 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHC-TTSEEEEEESSSSSSBCGGGHHH-HHTTSSCCGGG-----------SBSCCHHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcC-CCCeEEEEeCCCcccccccCcch-hhcccccchHH-----------HHHhhHHHHHH
Confidence            6999999999999999999987 46689999998776554433321 11111010000           12345667888


Q ss_pred             cCeEEEeCCcEEEEeCCCCEEEc---CCCc--EEecCcEEEeeCCCCc
Q 021871          133 KGIEMIYQDPVTSIDIEKQTLIT---NSGK--LLKYGSLIVATGCTAS  175 (306)
Q Consensus       133 ~~v~~~~~~~v~~v~~~~~~v~~---~~g~--~~~~~~lila~G~~~~  175 (306)
                      .+++++++++|.+++.+.+.+.+   .+++  .+.||++++|+|..+.
T Consensus        69 ~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~  116 (198)
T d1nhpa1          69 RGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF  116 (198)
T ss_dssp             TTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred             CCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceee
Confidence            99999999999999998876653   3443  6789999999997754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.30  E-value=4.2e-12  Score=89.85  Aligned_cols=94  Identities=20%  Similarity=0.219  Sum_probs=71.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      .+++++|||||+.|+.+|..|+++|.   +|+++|+.+...            +...             .+....+.+.
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~---~Vtlve~~~~il------------~~~d-------------~~~~~~l~~~   71 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGA---QVSVVEARERIL------------PTYD-------------SELTAPVAES   71 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS------------TTSC-------------HHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhccc---ceEEEeeecccc------------cccc-------------chhHHHHHHH
Confidence            35799999999999999999999998   999999986631            0000             0012456778


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeC
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATG  171 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G  171 (306)
                      +++.|++++++++|.+++.........++  ..+++|.+++|+|
T Consensus        72 l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          72 LKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             HHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            88899999999999998754443333333  4799999999998

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.2e-11  Score=93.18  Aligned_cols=120  Identities=19%  Similarity=0.203  Sum_probs=85.4

Q ss_pred             CCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCc------------------------
Q 021871          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD------------------------  232 (306)
Q Consensus       177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~------------------------  232 (306)
                      .|++||.+.+++...     .+.+......+++|+|||+|++|+|+|..+.+.+..                        
T Consensus         4 ~p~IpG~d~~~V~~a-----~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (162)
T d1ps9a2           4 TPPIDGIDHPKVLSY-----LDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGL   78 (162)
T ss_dssp             CCCCBTTTSTTEEEH-----HHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGB
T ss_pred             CCCCCCCCCCCeEEH-----HHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhccc
Confidence            467899889998653     233333445689999999999999999999987643                        


Q ss_pred             -------------EEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-CEEecCE
Q 021871          233 -------------TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADT  298 (306)
Q Consensus       233 -------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~i~~d~  298 (306)
                                   ++.+..................+...++..||++++++.|..|+  ++|..  +...+. ..++||.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~gv~--~~~~g~e~~i~aD~  154 (162)
T d1ps9a2          79 SPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLH--VVINGETQVLAVDN  154 (162)
T ss_dssp             CTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEE--EEETTEEEEECCSE
T ss_pred             ccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCCCE--EecCCeEEEEECCE
Confidence                         33333333322222444556677888999999999999999998  56654  333322 2589999


Q ss_pred             EEEecCC
Q 021871          299 VILLPYD  305 (306)
Q Consensus       299 vv~a~g~  305 (306)
                      ||+|+||
T Consensus       155 Vv~A~Gq  161 (162)
T d1ps9a2         155 VVICAGQ  161 (162)
T ss_dssp             EEECCCE
T ss_pred             EEECCCC
Confidence            9999996

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.27  E-value=1.8e-11  Score=86.90  Aligned_cols=96  Identities=18%  Similarity=0.225  Sum_probs=73.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +++++|||||+.|+.+|..|.+......+|+++++.+... .          . ..             .+....+...+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-~----------~-~d-------------~~~~~~~~~~l   72 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-R----------G-FD-------------SELRKQLTEQL   72 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-T----------T-SC-------------HHHHHHHHHHH
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-c----------c-cc-------------chhhHHHHHHH
Confidence            5799999999999999998877633234999999875531 0          0 00             00124567778


Q ss_pred             hhcCeEEEeCCcEEEEeCCC---CEEEcCCCcEEecCcEEEeeC
Q 021871          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATG  171 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~---~~v~~~~g~~~~~~~lila~G  171 (306)
                      ++.|+++++++.+.++....   ..+.+++|..+.+|.+++|+|
T Consensus        73 ~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          73 RANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             hhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            89999999999999997543   258889999999999999998

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.6e-11  Score=86.86  Aligned_cols=107  Identities=21%  Similarity=0.302  Sum_probs=82.8

Q ss_pred             CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH-HcC
Q 021871          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNG  263 (306)
Q Consensus       185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g  263 (306)
                      .+|+.++      ..+...+.++++|+|+|+|.+|+|.|.+|++.+.+|+++.|++.+..   ++.+    .+++. ..+
T Consensus        14 gkGV~yc------a~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~~----~~~~~~~~~   80 (126)
T d1fl2a2          14 TKGVTYC------PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVL----QDKLRSLKN   80 (126)
T ss_dssp             TTTEESC------HHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHHH----HHHHHTCTT
T ss_pred             CCCEEEE------EecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---cccc----ccccccccc
Confidence            4566664      22334677899999999999999999999999999999999987654   3333    33344 357


Q ss_pred             CEEEcCceEEEEEeCCCCcEEEEEeCC---CC--EEecCEEEEecCC
Q 021871          264 VKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTVILLPYD  305 (306)
Q Consensus       264 v~i~~~~~v~~i~~~~~~~v~~v~~~~---G~--~i~~d~vv~a~g~  305 (306)
                      |+++++++|.++.. +++.+.++++.+   |+  ++++|.++++.|+
T Consensus        81 I~v~~~~~v~~i~G-~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          81 VDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             EEEESSEEEEEEEE-SSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             eeEEcCcceEEEEc-cccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            99999999999995 445677777743   43  6999999999884

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.25  E-value=6.6e-12  Score=106.11  Aligned_cols=40  Identities=13%  Similarity=0.258  Sum_probs=34.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      .+++|+|||||+|||++|++|++.+. ..+|+|+||++..+
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~-~~~v~vfEk~~~iG   42 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSPG   42 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCC-CCCEEEEECCCCCC
Confidence            45799999999999999999998873 34899999998754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.25  E-value=1.8e-11  Score=86.99  Aligned_cols=95  Identities=16%  Similarity=0.259  Sum_probs=73.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (306)
                      ..+.+++|||||+.|+-+|..|++.|.   +|+++++.+...-.   .        +              .+....+..
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~---~Vtiv~~~~~ll~~---~--------d--------------~ei~~~l~~   71 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGA---EVTVLEAMDKFLPA---V--------D--------------EQVAKEAQK   71 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSSTT---S--------C--------------HHHHHHHHH
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCC---ceEEEEeecccCCc---c--------c--------------chhHHHHHH
Confidence            345799999999999999999999998   99999988663100   0        0              001245677


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCC--EEEcCCC---cEEecCcEEEeeC
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATG  171 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g---~~~~~~~lila~G  171 (306)
                      .+++.|++++++++++++...+.  .+.+.++   +.+.+|.+++|+|
T Consensus        72 ~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          72 ILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             HHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            88899999999999999987655  4444333   4799999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.24  E-value=1.2e-11  Score=88.53  Aligned_cols=94  Identities=16%  Similarity=0.185  Sum_probs=72.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||||+.|+.+|..|+++|.   +|+++|+.+...-.       .+ +                .+....+.++
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~---~Vtlie~~~~~l~~-------~~-d----------------~~~~~~~~~~   81 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGK---KVTVIDILDRPLGV-------YL-D----------------KEFTDVLTEE   81 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------TC-C----------------HHHHHHHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHhhccce---EEEEEEecCccccc-------cc-c----------------hhhHHHHHHH
Confidence            45799999999999999999999998   99999998653100       00 0                0012456677


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC-EEEcCCCcEEecCcEEEee
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ-TLITNSGKLLKYGSLIVAT  170 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~-~v~~~~g~~~~~~~lila~  170 (306)
                      +++.|+++++++++.+++.++. ...+.+++.+.+|.+++|.
T Consensus        82 l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          82 MEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred             hhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence            8889999999999999987654 3345678889999999883

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.24  E-value=7.6e-12  Score=96.02  Aligned_cols=108  Identities=20%  Similarity=0.237  Sum_probs=75.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHh
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (306)
                      ++|||||||++|+.+|.+|++++ ++.+|+++|+++.+... + ........... ..            ........+.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~-~~~~Vtlie~~~~~~~~-~-~~~~~~~~~~~-~~------------~~~~~~~~~~   66 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLAD-PSIEVTLIEPNTDYYTC-Y-LSNEVIGGDRK-LE------------SIKHGYDGLR   66 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC-TTSEEEEECSCSCEECS-T-THHHHHHTSSC-GG------------GGEECSHHHH
T ss_pred             CcEEEECccHHHHHHHHHHHHcC-CCCcEEEEECCCccccc-c-ccccccchhhh-hh------------hhhhhhhhcc
Confidence            69999999999999999999998 46799999998764221 1 11101100000 00            0123334456


Q ss_pred             hcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871          132 EKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR  176 (306)
Q Consensus       132 ~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~  176 (306)
                      ..++.+..+ .+..++.....+.+.+++.+.||++++|+|..++.
T Consensus        67 ~~~v~~~~~-~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~  110 (186)
T d1fcda1          67 AHGIQVVHD-SATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIY  110 (186)
T ss_dssp             TTTEEEECC-CEEECCTTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred             ccceeEeee-eeEeeeeccceeecccceeeccceEEEEeccccch
Confidence            677887755 67777777888888899999999999999988763

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.23  E-value=3.5e-11  Score=85.22  Aligned_cols=95  Identities=18%  Similarity=0.331  Sum_probs=74.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +++++|||||+.|+.+|..|.+.+....+|+++|+.+... .                    .|.    ......+...+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL-~--------------------~~d----~~~~~~l~~~l   74 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-R--------------------GFD----HTLREELTKQL   74 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS-T--------------------TSC----HHHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh-c--------------------ccc----hHHHHHHHHHH
Confidence            5799999999999999999988876555899999876531 0                    000    00125677888


Q ss_pred             hhcCeEEEeCCcEEEEeCCC---CEEEcCCCcEEecCcEEEee
Q 021871          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVAT  170 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~---~~v~~~~g~~~~~~~lila~  170 (306)
                      ++.|+++++++++.+++...   ..+.+++|+.+++|.+++|.
T Consensus        75 ~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          75 TANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             HhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            99999999999999997532   36889999999999999983

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.22  E-value=6.2e-11  Score=98.74  Aligned_cols=57  Identities=14%  Similarity=0.124  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC--CC--EEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~--G~--~i~~d~vv~a~g~  305 (306)
                      ..+...+.+.+.+.|++++++++++++..+++|++.+|...+  +.  .+.++.||+|||-
T Consensus       145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  205 (308)
T d1y0pa2         145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGG  205 (308)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCc
Confidence            456777888888899999999999998766778888887653  32  5889999999983

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.19  E-value=5.1e-11  Score=84.20  Aligned_cols=92  Identities=15%  Similarity=0.197  Sum_probs=71.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +++|+|||||+.|+.+|..|++.|.   +|+++++.+... .          ..+              ......+.+.+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~---~Vtlv~~~~~il-~----------~~d--------------~~~~~~~~~~l   73 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGI---DSYIFARGNRIL-R----------KFD--------------ESVINVLENDM   73 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC---EEEEECSSSSSC-T----------TSC--------------HHHHHHHHHHH
T ss_pred             CCEEEEECCchHHHHHHHHHHhccc---cceeeehhcccc-c----------ccc--------------HHHHHHHHHHH
Confidence            5789999999999999999999998   999999886531 0          000              00124567778


Q ss_pred             hhcCeEEEeCCcEEEEeCCC---CEEEcCCCcEE-ecCcEEEee
Q 021871          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLL-KYGSLIVAT  170 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~---~~v~~~~g~~~-~~~~lila~  170 (306)
                      ++.|+++++++++.+++...   ..+.+++|+.+ .||.+++|.
T Consensus        74 ~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          74 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             HhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            88999999999999997432   25888898876 479999984

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.18  E-value=9e-12  Score=105.15  Aligned_cols=59  Identities=17%  Similarity=0.158  Sum_probs=43.2

Q ss_pred             CccCccccccccceee--ecccCCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           28 RHSSAKNFQRRGFVVA--YSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        28 ~~~~~~~~~~~~~~~~--~~~~~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      .|..+|. +.+.....  ....+..+++|+|||||++||+||++|+++|+   +|+|+|+++..+
T Consensus         6 ~~~~~~~-~~~~~~~~~~~~~~~~~pkkV~IIGaG~aGLsaA~~L~~~G~---~V~vlE~~~~~G   66 (370)
T d2iida1           6 ECFQEND-YEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGH---QVTVLEASERPG   66 (370)
T ss_dssp             GGGCCTT-HHHHHHHHHHCSCCCSSCCEEEEECCBHHHHHHHHHHHHHTC---EEEEECSSSSSB
T ss_pred             hhcCCcc-HHHHHHHHhcCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCC
Confidence            4777766 22222111  11224556899999999999999999999998   999999987753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.18  E-value=3.6e-11  Score=85.86  Aligned_cols=90  Identities=17%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++++|||||+.|+.+|..|+++|.   +|+++++.+... .         ++  .              +....+.+.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~---~Vtlv~~~~~l~-~---------~d--~--------------~~~~~~~~~l   82 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY---HVKLIHRGAMFL-G---------LD--E--------------ELSNMIKDML   82 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC---EEEEECSSSCCT-T---------CC--H--------------HHHHHHHHHH
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc---eEEEEecccccc-C---------CC--H--------------HHHHHHHHHH
Confidence            3689999999999999999999998   999999876531 0         00  0              0024566778


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCC
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC  172 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~  172 (306)
                      ++.|+++++++++.+++.+.  + +.++..+++|.+++|+|.
T Consensus        83 ~~~GV~~~~~~~v~~~~~~~--v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          83 EETGVKFFLNSELLEANEEG--V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHTTEEEECSCCEEEECSSE--E-EETTEEEECSCEEEECCE
T ss_pred             HHCCcEEEeCCEEEEEeCCE--E-EeCCCEEECCEEEEEEEe
Confidence            88999999999998886543  3 446678999999999983

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=6.5e-15  Score=117.13  Aligned_cols=173  Identities=13%  Similarity=0.127  Sum_probs=91.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-C-CCCcccc------------------ccccCCCCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-Y-ERPALTK------------------GYLFPLDKKPAR  110 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~-~~~~~~~------------------~~~~~~~~~~~~  110 (306)
                      +|||+|||||++|++||.++++.|+   +|+|+|++..-+ + .....+.                  .+.+.......+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~---kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~   78 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQ---KCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFN   78 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---EEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCccccc
Confidence            5899999999999999999999998   999999865311 0 0000000                  000000000000


Q ss_pred             CCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCC
Q 021871          111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG  187 (306)
Q Consensus       111 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g  187 (306)
                      ++......   ...........+++.++++..........   ..+ ..++..+.++.+++|+|+.|.. |.+|+.+.-+
T Consensus        79 ~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~---~~~-~~~~~~~~~~~~iiatG~~p~i-p~ip~~~~l~  153 (217)
T d1gesa1          79 WETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA---KTL-EVNGETITADHILIATGGRPSH-PREPANDNIN  153 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET---TEE-EETTEEEEEEEEEECCCEEECC-CEEESCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee---eee-cCCCceeeeeeeeeecCccccC-CCCCCcCCcc
Confidence            00000000   00000112233556688877654432211   122 2355678999999999998873 5444322111


Q ss_pred             -----EEEEcc-HHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcE
Q 021871          188 -----VHYIRD-VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT  233 (306)
Q Consensus       188 -----~~~~~~-~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v  233 (306)
                           +..... ....+..  .....++|.++|+|.+++|+|..+...|.+|
T Consensus       154 l~~~gv~~~~~~~i~~d~~--~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v  203 (217)
T d1gesa1         154 LEAAGVKTNEKGYIVVDKY--QNTNIEGIYAVGDNTGAVELTPVAVAAGRRL  203 (217)
T ss_dssp             HHHHTCCBCTTSCBCCCTT--SBCSSTTEEECSGGGTSCCCHHHHHHHHHHH
T ss_pred             cccccEEEcCCccEeeCch--hccCCCcEEEECCCccHHHHHHHHHHHHHHH
Confidence                 100000 0000000  0012467999999999999999888777655

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.16  E-value=6.3e-11  Score=89.52  Aligned_cols=105  Identities=25%  Similarity=0.443  Sum_probs=75.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhh
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (306)
                      +|+|||||++|+.+|..|++ +.   +|+|+++++...+..+.... .+.... ..           .........++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~---~Vtvv~~~~~~~~~~~~~~~-~~~~~~-~~-----------~~~~~~~~~~~~~   64 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TY---EVTVIDKEPVPYYSKPMLSH-YIAGFI-PR-----------NRLFPYSLDWYRK   64 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS---EEEEECSSSSCCCCSTTHHH-HHTTSS-CG-----------GGGCSSCHHHHHH
T ss_pred             eEEEECCcHHHHHHHHHHHc-CC---CEEEEeccccccccccchhh-hhhhhh-hh-----------hhhhHHHHHHHHh
Confidence            79999999999999999965 45   89999998776555433222 111100 00           0112456777888


Q ss_pred             cCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871          133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       133 ~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      .++++++++.+..++.....+.. ++..+.||.+++|+|..+.
T Consensus        65 ~~v~~~~~~~v~~i~~~~~~~~~-~~~~i~~D~li~a~G~~~~  106 (167)
T d1xhca1          65 RGIEIRLAEEAKLIDRGRKVVIT-EKGEVPYDTLVLATGAPNV  106 (167)
T ss_dssp             HTEEEECSCCEEEEETTTTEEEE-SSCEEECSEEEECCCEECC
T ss_pred             ccceeeeeccccccccccccccc-cccccccceeEEEEEecCC
Confidence            99999999999999877665554 4457999999999997654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.7e-11  Score=87.62  Aligned_cols=94  Identities=17%  Similarity=0.234  Sum_probs=73.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH----cCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVE----HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~----~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (306)
                      .++++|||||++|+.+|..|.+    .|.   +|+++++.+...-.        .++                .+....+
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~---~Vt~i~~~~~~l~~--------~~~----------------~~~~~~~   89 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT---EVIQLFPEKGNMGK--------ILP----------------EYLSNWT   89 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC---EEEEECSSSSTTTT--------TSC----------------HHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC---EEEEecccccCCcc--------cCC----------------HHHHHHH
Confidence            4689999999999999998864    466   99999987663100        000                0002346


Q ss_pred             hhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeC
Q 021871          127 PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG  171 (306)
Q Consensus       127 ~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G  171 (306)
                      .+.+++.|+++++++.|.+++.++.  .+.+++|+.+.+|.+++|+|
T Consensus        90 ~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          90 MEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            6778889999999999999987544  68888999999999999998

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.15  E-value=9.2e-11  Score=83.66  Aligned_cols=93  Identities=19%  Similarity=0.257  Sum_probs=70.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      .++|+|||||+.|+-+|..|++.|.   +|+++++.+...-   ....                      .....+...+
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~---~vt~i~~~~~~l~---~~d~----------------------~~~~~~~~~l   73 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGR---RTVMLVRTEPLKL---IKDN----------------------ETRAYVLDRM   73 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTTT---CCSH----------------------HHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcch---hheEeeccchhhc---cccc----------------------chhhhhhhhh
Confidence            4799999999999999999999997   9999998765310   0000                      0024567778


Q ss_pred             hhcCeEEEeCCcEEEEeCCCC----E---EEcCCCcEEecCcEEEeeC
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQ----T---LITNSGKLLKYGSLIVATG  171 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~----~---v~~~~g~~~~~~~lila~G  171 (306)
                      ++.++++++++++.++...+.    .   ....+++.+++|++++|+|
T Consensus        74 ~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          74 KEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             hccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            889999999999999986542    1   1233456899999999998

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.7e-11  Score=94.88  Aligned_cols=111  Identities=18%  Similarity=0.226  Sum_probs=70.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCChh
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  128 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  128 (306)
                      +.+||+||||||+||+||.+|++.|.   +|+|+|+....+..        ..  .....+++.++. ....+....+..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~---~v~iie~~~~~g~~--------~~--~~~i~~~~~~~~~~~~~~~~~~~~~   70 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQL--------TT--TTEVENWPGDPNDLTGPLLMERMHE   70 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC---CCEEECCSSTTGGG--------GG--CSBCCCSTTCCSSCBHHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC---ceEEEEeecccccc--------cc--cchhhhhhccccccchHHHHHHHHH
Confidence            45799999999999999999999998   99999986543210        00  011111222211 111111223444


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      .+.+.++.+... +|..++....  .+.. ....+.++.+++++|..++
T Consensus        71 ~~~~~~~~~~~~-~V~~~~~~~~~~~v~~-~~~~~~~~~viva~G~~~~  117 (190)
T d1trba1          71 HATKFETEIIFD-HINKVDLQNRPFRLNG-DNGEYTCDALIIATGASAR  117 (190)
T ss_dssp             HHHHTTCEEECC-CEEEEECSSSSEEEEE-SSCEEEEEEEEECCCEEEC
T ss_pred             HHHhcCcEEecc-eeEEEecCCCcEEEEE-eeeeEeeeeeeeecceeee
Confidence            566678887755 7888887654  3333 3346899999999997654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.10  E-value=4e-13  Score=108.02  Aligned_cols=154  Identities=12%  Similarity=0.104  Sum_probs=84.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCC----CCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMA----DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~----~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (306)
                      +++|+|||||||||+||++|+++|++    ..+|+|+|+.+..+        |.+.....+..  ..+..     .....
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G--------G~~~~gi~p~~--~~~~~-----~~~~~   66 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW--------GLVRSGVAPDH--PKIKS-----ISKQF   66 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS--------THHHHTSCTTC--TGGGG-----GHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC--------CeeeeccCccc--ccchh-----hhhhh
Confidence            46999999999999999999999852    24799999987642        22211000000  00000     01233


Q ss_pred             hhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCC----CEEEEccHHHH---HH
Q 021871          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP----GVHYIRDVADA---DA  199 (306)
Q Consensus       127 ~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~----g~~~~~~~~~~---~~  199 (306)
                      ...+.+.++.++++.++   ..+.   ..+ .....|+.+++|+|.....+. .++...+    ....+......   ..
T Consensus        67 ~~~~~~~g~~~~~~~~v---~~~~---~~~-~~~~~~~~v~~atGa~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~  138 (239)
T d1lqta2          67 EKTAEDPRFRFFGNVVV---GEHV---QPG-ELSERYDAVIYAVGAQSRGVP-TPGLPFDDQSGTIPNVGGRINGSPNEY  138 (239)
T ss_dssp             HHHHTSTTEEEEESCCB---TTTB---CHH-HHHHHSSEEEECCCCCEECCC-CTTSCCBTTTTBCCEETTEETTCSSEE
T ss_pred             hhhhccCCceEEEEEEe---cccc---chh-hhhccccceeeecCCCccccc-cccccccccccchhhhhhhhccccccc
Confidence            44566678999888664   1111   000 012479999999998765332 2221111    11111100000   00


Q ss_pred             HHHhhhcCCeEEEEcCCHHHHHHHHHHH
Q 021871          200 LISSLEKAKKVVVVGGGYIGMEVAAAAV  227 (306)
Q Consensus       200 ~~~~~~~~~~v~viG~g~~a~e~a~~l~  227 (306)
                      .......+++++|+|++..+.+.+..+.
T Consensus       139 ~~~~~~~g~~~vv~g~g~~a~d~a~~~v  166 (239)
T d1lqta2         139 VVGWIKRGPTGVIGTNKKDAQDTVDTLI  166 (239)
T ss_dssp             ECTHHHHCSCSCTTHHHHHHHHHHHHHH
T ss_pred             cceeecCCCEEEEeCCCchHHHHHHHHH
Confidence            0001123567778888999998887654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.09  E-value=3.4e-11  Score=99.95  Aligned_cols=36  Identities=19%  Similarity=0.269  Sum_probs=33.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      .||+|||||++||++|++|+++|+   +|+|+|+++..+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~---~V~vlE~~~~~G   36 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGT---DAVLLESSARLG   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTC---CEEEECSSSSSB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCC
Confidence            389999999999999999999998   999999987764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.09  E-value=8.8e-11  Score=92.13  Aligned_cols=114  Identities=13%  Similarity=0.149  Sum_probs=68.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC-CCCC--CCcc---ccccccCCCCCCCCCCCcccccCCCCCc
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYE--RPAL---TKGYLFPLDKKPARLPGFHTCVGSGGER  124 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~-~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (306)
                      .|||+|||||+||+.||.++++.|.   ++.+|+++.. .+..  .+..   .++.+..  .....-+.....     ..
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~---ktllit~~~~~ig~~~cnp~~gg~~kg~l~r--eid~kG~av~a~-----ra   71 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGV---RVGLLTQSLDAVMMPFLPPKPPFPPGSLLER--AYDPKDERVWAF-----HA   71 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSCCCSCCCTTCHHHH--HCCTTCCCHHHH-----HH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC---cEEEEEeccchhcccccCCccccCCCcceee--eeeccchhhhhH-----HH
Confidence            4899999999999999999999999   9999997632 2111  1100   0000000  000000000000     00


Q ss_pred             CChhHHh-hcCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCcEEEeeCCCCc
Q 021871          125 QTPEWYK-EKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       125 ~~~~~~~-~~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ++...+. ..+++++.. +|..+..++.   .|.+.+|..+.++.||||||+..+
T Consensus        72 Q~k~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          72 RAKYLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             HHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHHHHhhhcCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCccee
Confidence            1112222 247887755 7777765444   467888989999999999997743

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.09  E-value=3.7e-11  Score=93.07  Aligned_cols=115  Identities=20%  Similarity=0.243  Sum_probs=70.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCChh
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  128 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  128 (306)
                      .++||+|||||++||+||.+|++.|.   +++|+|+.........    +.+.. .....++++++. ....+....+..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~---~v~vie~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~el~~~~~~   75 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAEL---KPLLFEGWMANDIAPG----GQLTT-TTDVENFPGFPEGILGVELTDKFRK   75 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTBCTT----CGGGG-CSEECCSTTCTTCEEHHHHHHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCC---cEEEEEeecccccccc----ccccc-chhhhccccccccccchHHHHHHHH
Confidence            35899999999999999999999998   8999998755432211    11110 000111122211 111111223334


Q ss_pred             HHhhcCeEEEeCCcEEEEeCCCCE-EEcCCCcEEecCcEEEeeCCC
Q 021871          129 WYKEKGIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCT  173 (306)
Q Consensus       129 ~~~~~~v~~~~~~~v~~v~~~~~~-v~~~~g~~~~~~~lila~G~~  173 (306)
                      ..+++++++... +|..++..... ....+.....++.+++++|..
T Consensus        76 q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          76 QSERFGTTIFTE-TVTKVDFSSKPFKLFTDSKAILADAVILAIGAV  120 (192)
T ss_dssp             HHHHTTCEEECC-CCCEEECSSSSEEEECSSEEEEEEEEEECCCEE
T ss_pred             HHHhhcceeeee-eEEecccccCcEEecccceeeeeeeEEEEeeee
Confidence            456788888755 78888876542 223344578999999999853

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.09  E-value=1.8e-10  Score=81.56  Aligned_cols=91  Identities=15%  Similarity=0.276  Sum_probs=68.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      .+++++|||||+.|+.+|..|++.|.   +|+++|+.+...       .    ..+              .+....+...
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~---~Vtlve~~~~il-------~----~~d--------------~~~~~~l~~~   72 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGT---KVTILEGAGEIL-------S----GFE--------------KQMAAIIKKR   72 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS-------T----TSC--------------HHHHHHHHHH
T ss_pred             cCCeEEEECCCccceeeeeeeccccc---EEEEEEecceec-------c----ccc--------------chhHHHHHHH
Confidence            45799999999999999999999998   999999887641       0    000              0012456777


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEc-CCC--cEEecCcEEE
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLIT-NSG--KLLKYGSLIV  168 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~-~~g--~~~~~~~lil  168 (306)
                      +++.|+++++++.+.+++....  .+.+ .+|  ..+++|.|++
T Consensus        73 l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlv  116 (117)
T d1ebda2          73 LKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV  116 (117)
T ss_dssp             HHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEE
T ss_pred             HHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEE
Confidence            8889999999999999976543  3333 234  4689999987

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.3e-10  Score=81.90  Aligned_cols=93  Identities=19%  Similarity=0.222  Sum_probs=69.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      +++++|||||+.|+.+|..|+++|.   +|+++++.+... .      +  ++                .+....+.+.+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~~l-~------~--~d----------------~~~~~~~~~~l   73 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS---KTSLMIRHDKVL-R------S--FD----------------SMISTNCTEEL   73 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC-T------T--SC----------------HHHHHHHHHHH
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc---EEEEEeeccccc-c------c--hh----------------hHHHHHHHHHH
Confidence            4799999999999999999999998   999999986531 0      0  00                00125667778


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCE--E---EcCCCc------EEecCcEEEeeC
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQT--L---ITNSGK------LLKYGSLIVATG  171 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~--v---~~~~g~------~~~~~~lila~G  171 (306)
                      ++.|+++++++++.++......  +   ....|+      ...+|.+++|+|
T Consensus        74 ~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          74 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             HHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            8999999999999999765432  2   222332      568999999987

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.08  E-value=7.1e-10  Score=92.82  Aligned_cols=58  Identities=17%  Similarity=0.223  Sum_probs=46.6

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC--CC--EEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~--G~--~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.+.++|++|+++++|+++..+++|+|.+|...+  ++  .+.++.||+|||-
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG  212 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGG  212 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCC
Confidence            3466777888888999999999999998866678887876643  32  5899999999983

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=2.1e-10  Score=81.66  Aligned_cols=92  Identities=17%  Similarity=0.307  Sum_probs=68.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      .+++++|||||+.|+.+|..|+++|.   +|+++++.+... .          ..+              .+....+.+.
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~---~Vtii~~~~~~l-~----------~~d--------------~ei~~~l~~~   73 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGS---KVTVVEFQPQIG-A----------SMD--------------GEVAKATQKF   73 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS-S----------SSC--------------HHHHHHHHHH
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCc---ceeEEEeccccc-h----------hhh--------------hhhHHHHHHH
Confidence            35799999999999999999999998   999999886631 0          000              0012466788


Q ss_pred             HhhcCeEEEeCCcEEEEeCCC--CE--EEcCCC-----cEEecCcEEEe
Q 021871          130 YKEKGIEMIYQDPVTSIDIEK--QT--LITNSG-----KLLKYGSLIVA  169 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~--~~--v~~~~g-----~~~~~~~lila  169 (306)
                      +++.|+++++++++.++...+  ..  +...++     ..+++|.|++|
T Consensus        74 l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          74 LKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             HHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            889999999999999987543  23  333322     37899999986

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.07  E-value=2e-10  Score=82.03  Aligned_cols=94  Identities=13%  Similarity=0.151  Sum_probs=71.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      .+.+++|||||+.|+-+|..+++.|.   +|+++|+.+... .           ...             .+....+.+.
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~---~Vtive~~~~il-~-----------~~d-------------~~~~~~l~~~   76 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGS---RLDVVEMMDGLM-Q-----------GAD-------------RDLVKVWQKQ   76 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSSSSS-T-----------TSC-------------HHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCC---EEEEEEeecccc-c-----------cch-------------hhHHHHHHHH
Confidence            35799999999999999999999998   999999986531 0           000             0012456777


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEEcC--CC--cEEecCcEEEeeC
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATG  171 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~--~g--~~~~~~~lila~G  171 (306)
                      +++.+++++.++++.++.....  .+.++  ++  +.+++|.+++|+|
T Consensus        77 l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          77 NEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             HHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            8889999999999999986544  33332  33  3799999999998

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.07  E-value=5.7e-10  Score=93.21  Aligned_cols=57  Identities=16%  Similarity=0.260  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC--CCC--EEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~--~G~--~i~~d~vv~a~g~  305 (306)
                      ..+...+.+.+++.|++++++++++++..++++++.+|...  +++  .+.++.||+|||-
T Consensus       148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred             hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEeccc
Confidence            45778888999999999999999999866678888887664  332  5789999999984

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.06  E-value=1.1e-09  Score=78.34  Aligned_cols=109  Identities=15%  Similarity=0.238  Sum_probs=79.7

Q ss_pred             CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCC
Q 021871          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  264 (306)
Q Consensus       185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  264 (306)
                      .+|+.|+.   .|+.. ..+.+++.|+|+|+|.+|+|.|.+|++...+||++.|++.+..   .+.+.   .+..+..+|
T Consensus        16 gkGVsyca---~CDg~-a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~~~~~---~~l~~~~nI   85 (130)
T d1vdca2          16 NRGISACA---VCDGA-APIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQ---QRALSNPKI   85 (130)
T ss_dssp             TTTEESCH---HHHTT-SGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHH---HHHHTCTTE
T ss_pred             CCcEEEEE---EecCc-hHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---chhhh---hccccCCce
Confidence            36776652   33320 1366799999999999999999999999999999999988765   33333   334455689


Q ss_pred             EEEcCceEEEEEeCCC-CcEEEEEeC---CC--CEEecCEEEEec
Q 021871          265 KFVKGASIKNLEAGSD-GRVAAVKLE---DG--STIDADTVILLP  303 (306)
Q Consensus       265 ~i~~~~~v~~i~~~~~-~~v~~v~~~---~G--~~i~~d~vv~a~  303 (306)
                      ++++++++.+|.-++. +.+.++.+.   +|  +++++|.++++.
T Consensus        86 ~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          86 DVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             EEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            9999999999995322 345556543   34  369999999874

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.06  E-value=6.1e-11  Score=96.34  Aligned_cols=122  Identities=10%  Similarity=0.049  Sum_probs=70.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC-c--ccc-cc--c--cCCC-CC-CCCCCCcccccC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTK-GY--L--FPLD-KK-PARLPGFHTCVG  119 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~--~~~-~~--~--~~~~-~~-~~~~~~~~~~~~  119 (306)
                      ...+|+|||||++||++|..|+++|+   +|+|+|+.+....... .  +.. +.  +  .... .. ......+.....
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   79 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV---DVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDA   79 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEET
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEec
Confidence            35689999999999999999999999   9999999754321100 0  000 00  0  0000 00 000000000000


Q ss_pred             ----------CCCCcCC-----hhHH-hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCC
Q 021871          120 ----------SGGERQT-----PEWY-KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (306)
Q Consensus       120 ----------~~~~~~~-----~~~~-~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~  174 (306)
                                .......     ...+ ...+..++++..+..++....  ++.++||..+++|++|.|.|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1          80 LTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             TTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             cCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence                      0000000     0111 123566788999999886543  67888999999999999999654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.03  E-value=1.5e-09  Score=87.31  Aligned_cols=96  Identities=22%  Similarity=0.349  Sum_probs=79.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-------------------------------------------  245 (306)
                      .|+|||+|++|+-.|..|++.+.+|.++++++.+...                                           
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI   83 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence            4899999999999999999999999999987643200                                           


Q ss_pred             ------------------c-----cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEe
Q 021871          246 ------------------L-----FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILL  302 (306)
Q Consensus       246 ------------------~-----~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a  302 (306)
                                        .     ....+.+.+.+.+++.||+++.+++|++|.. +++.+..|.+++|+++.+|.||+|
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~a~~vI~A  162 (251)
T d2i0za1          84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIA  162 (251)
T ss_dssp             HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEEC
T ss_pred             HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEE-ECCEEEEEEeCCCCeEecCeEEEc
Confidence                              0     0023556677888899999999999999987 567777899999999999999999


Q ss_pred             cCC
Q 021871          303 PYD  305 (306)
Q Consensus       303 ~g~  305 (306)
                      +|.
T Consensus       163 tGg  165 (251)
T d2i0za1         163 VGG  165 (251)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            984

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=5.9e-10  Score=79.23  Aligned_cols=93  Identities=17%  Similarity=0.222  Sum_probs=66.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      .+.+++|||||+.|+.+|..|++.|.   +|+|++++...  .  ..      +                .+....+.+.
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~---~Vtii~~~~~l--~--~~------D----------------~~~~~~l~~~   69 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILL--R--GF------D----------------QDMANKIGEH   69 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSS--T--TS------C----------------HHHHHHHHHH
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCC---eEEEEEechhh--c--cC------C----------------HHHHHHHHHH
Confidence            35689999999999999999999998   99999865321  0  00      0                0012567788


Q ss_pred             HhhcCeEEEeCCcEEEEeCCC----C--EEEcCC---Cc--EEecCcEEEeeC
Q 021871          130 YKEKGIEMIYQDPVTSIDIEK----Q--TLITNS---GK--LLKYGSLIVATG  171 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~----~--~v~~~~---g~--~~~~~~lila~G  171 (306)
                      +++.|+++++++.+.++....    .  .+....   ++  ..++|.|++|+|
T Consensus        70 l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          70 MEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             HHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            899999999999888885421    1  233322   22  467999999998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.99  E-value=5.7e-10  Score=79.50  Aligned_cols=93  Identities=14%  Similarity=0.272  Sum_probs=69.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      .+++++|||||..|+-+|..|+++|.   +|+|+++.+... .  .     +   +              ......+.+.
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~---~Vtvi~~~~~~l-~--~-----~---d--------------~~~~~~l~~~   75 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGS---EVTVVEFASEIV-P--T-----M---D--------------AEIRKQFQRS   75 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC---EEEEECSSSSSS-T--T-----S---C--------------HHHHHHHHHH
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCC---eEEEEEEccccC-c--h-----h---h--------------hcchhhhhhh
Confidence            35799999999999999999999998   999999987641 0  0     0   0              0012456788


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC--EEE--cC-CC--cEEecCcEEEee
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ--TLI--TN-SG--KLLKYGSLIVAT  170 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~--~v~--~~-~g--~~~~~~~lila~  170 (306)
                      +++.|+++++++++.+++..+.  .+.  .. ++  ..+++|++++|.
T Consensus        76 l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          76 LEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            8999999999999999986543  333  22 33  368999999873

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.96  E-value=7.8e-11  Score=93.87  Aligned_cols=108  Identities=14%  Similarity=0.119  Sum_probs=64.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHh
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (306)
                      .+|+|||||||||+||.+|++.+. ..+|+|+|+.+..+        |.+.....  .........     ......++.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~-~~~V~v~e~~~~~g--------G~~~~~~~--~~~~~~~~~-----~~~~~~~~~   65 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVPF--------GLVRFGVA--PDHPEVKNV-----INTFTQTAR   65 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSSC--------THHHHTSC--TTCGGGGGH-----HHHHHHHHT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCC-CCeEEEEeCCCCCC--------ceehhhcc--ccccccccc-----hhhhhhhhh
Confidence            489999999999999999998753 44999999987642        11111000  000000000     123445566


Q ss_pred             hcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCC
Q 021871          132 EKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG  182 (306)
Q Consensus       132 ~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~  182 (306)
                      +.+++++.++.|   ..+.....+    .-.||.+++|+|+.+...+..++
T Consensus        66 ~~~~~~~~~~~v---~~~~~~~~l----~~~~d~v~~a~Ga~~~~~~~~~~  109 (230)
T d1cjca2          66 SDRCAFYGNVEV---GRDVTVQEL----QDAYHAVVLSYGAEDKSRPIDPS  109 (230)
T ss_dssp             STTEEEEBSCCB---TTTBCHHHH----HHHSSEEEECCCCCEECCCCCTT
T ss_pred             cCCeeEEeeEEe---CccccHHHH----HhhhceEEEEeeccccccccccc
Confidence            788998887665   211100000    13689999999998654444443

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=4.4e-10  Score=86.10  Aligned_cols=108  Identities=21%  Similarity=0.230  Sum_probs=67.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHh
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (306)
                      |||+||||||+||+||.++++.|.   +|+|+|++...          .+.. .....+++.+....+......+....+
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~---~v~iie~~~gg----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGI---RTGLMGERFGG----------QILD-TVDIENYISVPKTEGQKLAGALKVHVD   67 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSTTG----------GGGG-CCEECCBTTBSSEEHHHHHHHHHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCC---eEEEEEEecCC----------cccc-cccceeccccchhhhHHHHHHHHHHhh
Confidence            799999999999999999999998   99999975321          0000 000111222221111111223344456


Q ss_pred             hcCeEEEeCCcEEEEeCCC-----CEEEcCCCcEEecCcEEEeeCCC
Q 021871          132 EKGIEMIYQDPVTSIDIEK-----QTLITNSGKLLKYGSLIVATGCT  173 (306)
Q Consensus       132 ~~~v~~~~~~~v~~v~~~~-----~~v~~~~g~~~~~~~lila~G~~  173 (306)
                      +++.+......+..+....     ......+...+.++.+++++|..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  114 (184)
T d1fl2a1          68 EYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (184)
T ss_dssp             TSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             heeceeeccceeeeecccccccceeeeeeecceeeeccccccccccc
Confidence            6777877776776665432     13444556678999999999854

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.95  E-value=5.6e-09  Score=79.75  Aligned_cols=112  Identities=30%  Similarity=0.450  Sum_probs=75.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (306)
                      ..+|+|||||++|+.+|..|+++|. +..|+++++.+...+........+...    ..  .      ............
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~-~v~v~~~~~~~~~~~~~~~~~~~~~~~----~~--~------~~~~~~~~~~~~   69 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAG----KA--T------AESLYLRTPDAY   69 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTT----CS--C------SGGGBSSCHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCC-ceEEEEecCccccchhhhHHHHHHHHh----hh--h------hhhhhhhhhhhh
Confidence            4689999999999999999999997 334444455444333221111111100    00  0      001123445556


Q ss_pred             hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (306)
Q Consensus       131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~  175 (306)
                      ......+..+..+..++.....+...++..+.+|.+++++|..+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~  114 (185)
T d1q1ra1          70 AAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPL  114 (185)
T ss_dssp             HHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEE
T ss_pred             cccceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccC
Confidence            677788888888888888888999999999999999999997654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.90  E-value=1.5e-09  Score=83.00  Aligned_cols=94  Identities=19%  Similarity=0.283  Sum_probs=67.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHH----------HHHHHHcCCEEEcCceEEEEEe
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY----------EQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      .+|+|||+|.+|+|+|..|.+.+.+++++.+.+........+.+...+          .+.....+++++.++.++++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            469999999999999999999887777665554433221111111111          1223456899999999999984


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                        +..  .+.+.+|+++++|.+|||+|.
T Consensus        84 --~~~--~~~~~~g~~~~~D~vi~a~G~  107 (183)
T d1d7ya1          84 --QAH--TVALSDGRTLPYGTLVLATGA  107 (183)
T ss_dssp             --TTT--EEEETTSCEEECSEEEECCCE
T ss_pred             --ccc--eeEecCCcEeeeeeEEEEEEE
Confidence              333  477899999999999999984

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.90  E-value=6e-09  Score=78.29  Aligned_cols=89  Identities=24%  Similarity=0.325  Sum_probs=66.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHH-------------HHHHHHHHHcCCEEEcCceEEEE
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA-------------QRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      ||+|||+|++|+|+|..|++ +.+|+++.+.+.....  .+.+.             ....+.+++.++++++++.++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   78 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYS--KPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   78 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCC--STTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccccc--ccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccc
Confidence            79999999999999999976 5689999887653321  11111             11245677889999999999999


Q ss_pred             EeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          276 EAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +.  +.+   +.+.+|+++++|.+|||+|.
T Consensus        79 ~~--~~~---~~~~~~~~i~~D~li~a~G~  103 (167)
T d1xhca1          79 DR--GRK---VVITEKGEVPYDTLVLATGA  103 (167)
T ss_dssp             ET--TTT---EEEESSCEEECSEEEECCCE
T ss_pred             cc--ccc---cccccccccccceeEEEEEe
Confidence            83  343   33456678999999999984

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=1.1e-09  Score=88.03  Aligned_cols=55  Identities=24%  Similarity=0.280  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC-CCcEEEEEeCCCCEEecCEEEEec
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTVILLP  303 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~v~~v~~~~G~~i~~d~vv~a~  303 (306)
                      ...+.+.+.+.+++.|++|+++++|++|..++ ++++.+|+ .+|+++.||.||+.+
T Consensus       235 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VI~~~  290 (297)
T d2bcgg1         235 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-TKLGTFKAPLVIADP  290 (297)
T ss_dssp             TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEE-ETTEEEECSCEEECG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEE-cCCEEEECCEEEECh
Confidence            45678889999999999999999999997543 45665565 568899999998764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.83  E-value=2e-08  Score=80.81  Aligned_cols=98  Identities=12%  Similarity=0.166  Sum_probs=76.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------------------------------
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  245 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------------  245 (306)
                      ..|+|||+|++|+-.|..+++.+.+|.++++.+.+...                                          
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccchh
Confidence            46899999999999999999999999999988653200                                          


Q ss_pred             ---------------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCC-cEEEEEeCCCCEEecCEEEEec
Q 021871          246 ---------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTVILLP  303 (306)
Q Consensus       246 ---------------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~v~~v~~~~G~~i~~d~vv~a~  303 (306)
                                           .....+.+.+.+.+++.||+++++++|++++..+++ .+..+...+++++.||.||+||
T Consensus        85 ~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAt  164 (253)
T d2gqfa1          85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVAT  164 (253)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECC
T ss_pred             hhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcC
Confidence                                 001345667788888999999999999999865554 2223445567799999999999


Q ss_pred             CC
Q 021871          304 YD  305 (306)
Q Consensus       304 g~  305 (306)
                      |-
T Consensus       165 GG  166 (253)
T d2gqfa1         165 GG  166 (253)
T ss_dssp             CC
T ss_pred             Cc
Confidence            84

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.83  E-value=2.1e-08  Score=77.55  Aligned_cols=95  Identities=19%  Similarity=0.235  Sum_probs=68.0

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCccccccc-C-----------HHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLF-T-----------PSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      ||+|||+|.+|+++|..|.+.+  .+|+++.+.+.+..... .           +.+.....+.++++||+++++++|++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~   81 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence            6899999999999999998874  46889988765421100 0           11111234678889999999999999


Q ss_pred             EEeCCCCcEEEEE-eCCCC--EEecCEEEEecCC
Q 021871          275 LEAGSDGRVAAVK-LEDGS--TIDADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~-~~~G~--~i~~d~vv~a~g~  305 (306)
                      |+. ++..+ .++ ..+|+  ++.+|.+|+|+|.
T Consensus        82 i~~-~~~~v-~~~~~~~g~~~~~~~D~li~a~G~  113 (198)
T d1nhpa1          82 IQP-KEHQV-TVKDLVSGEERVENYDKLIISPGA  113 (198)
T ss_dssp             EET-TTTEE-EEEETTTCCEEEEECSEEEECCCE
T ss_pred             Eee-ccccc-eeeecccccccccccceeeEeecc
Confidence            996 34443 343 45554  4789999999984

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.81  E-value=3.9e-10  Score=89.06  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .++|++|||||++|+++|.+++++|.   +|+|+|++.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~---~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGI---PTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCC
Confidence            46899999999999999999999998   999999875

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=2.5e-09  Score=85.14  Aligned_cols=36  Identities=17%  Similarity=0.334  Sum_probs=33.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      .|||+||||||+|++||.++++.|+   +|+|+|+.+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~---kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDK---KVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCC---CEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCC
Confidence            3899999999999999999999999   99999987653

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.77  E-value=2.5e-08  Score=73.38  Aligned_cols=93  Identities=24%  Similarity=0.336  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~  285 (306)
                      +++|+|||+|++|+|.|..+.+.+ ..|+++.|.+..-.. ..+    .....+.+.+++++....+.++.. +++.+.+
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~-a~~----~~~~~a~~~~~~~~~~~~~~ei~~-~~~~~~~  118 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVP----EEVELAKEEKCEFLPFLSPRKVIV-KGGRIVA  118 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCH----HHHHHHHHTTCEEECSEEEEEEEE-ETTEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhc-cch----hheeecccccceeEeccccEEEEe-cCCceEE
Confidence            578999999999999999998886 558888887654321 122    223345678999999988888875 4555444


Q ss_pred             EEe------CCC---------CEEecCEEEEecCC
Q 021871          286 VKL------EDG---------STIDADTVILLPYD  305 (306)
Q Consensus       286 v~~------~~G---------~~i~~d~vv~a~g~  305 (306)
                      +..      ++|         .+++||.||+|.|.
T Consensus       119 v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         119 VQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            432      222         25899999999983

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.74  E-value=3.2e-10  Score=91.97  Aligned_cols=34  Identities=26%  Similarity=0.546  Sum_probs=31.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ||++|||||++|+.||.+++++|.   +|+|+|++..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~---~V~liE~~~~   35 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNA---KVALVEKSRL   35 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCC
Confidence            799999999999999999999998   9999998653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=2e-08  Score=75.88  Aligned_cols=85  Identities=19%  Similarity=0.208  Sum_probs=67.6

Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc----------cCHHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~gv~i~~~~~v~~  274 (306)
                      ..+++|+|||+|+.|++.|..|++++.+|+++.+.+.+....          ...++.+.+.+.+++.||++++++.|+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~  120 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA  120 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc
Confidence            357999999999999999999999999999999998765321          1235677888889999999999987731


Q ss_pred             EEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          275 LEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       275 i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                           +           ....+|.||+|||.
T Consensus       121 -----~-----------~~~~~d~vilAtG~  135 (179)
T d1ps9a3         121 -----D-----------QLQAFDETILASGI  135 (179)
T ss_dssp             -----S-----------SSCCSSEEEECCCE
T ss_pred             -----c-----------ccccceeEEEeecC
Confidence                 1           12457888888874

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.71  E-value=1.7e-08  Score=82.31  Aligned_cols=38  Identities=21%  Similarity=0.346  Sum_probs=33.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHH-cCCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~-~g~~~~~V~vie~~~~~~   90 (306)
                      ..+||+|||||++||++|++|++ .|+   +|+|+|+.+..+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~---~V~vlE~~~~~G   70 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNV---QVAIIEQSVSPG   70 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTS---CEEEEESSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCC---eEEEEecCCCCC
Confidence            35799999999999999999987 498   999999987654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.7e-09  Score=87.90  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=35.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      .++.+|+|||||++||+||++|+++|+   +|+|+|+++..+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~---~V~VlEa~~r~G   41 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRVG   41 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC---EEEEECSSSSSB
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCc
Confidence            456799999999999999999999998   999999988764

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.70  E-value=5.9e-09  Score=82.34  Aligned_cols=36  Identities=17%  Similarity=0.309  Sum_probs=33.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++|||+|||||||||+||.++++.|+   +|+|+|+...
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~---~V~viE~~~~   37 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGL---KTALIEKYKG   37 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccC
Confidence            57999999999999999999999998   9999998654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=4.9e-09  Score=86.59  Aligned_cols=37  Identities=16%  Similarity=0.292  Sum_probs=34.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      |+||+|||||++||++|++|++.|+   +|+|+|+++..+
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~---~V~iiEk~~~iG   37 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNK---KVLVIEKRNHIG   37 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTC---CEEEECSSSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCC---cEEEEECCCCcc
Confidence            4799999999999999999999998   999999998874

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=8e-09  Score=80.92  Aligned_cols=94  Identities=22%  Similarity=0.363  Sum_probs=67.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCccccc-------cc--------------------------CHH--
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQR-------LF--------------------------TPS--  250 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~~~-------~~--------------------------~~~--  250 (306)
                      .+++|||+|..|+++|..|.+.+  .+|+++.+.+.+...       ..                          +++  
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY   84 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence            46899999999999999998765  468888775443100       00                          000  


Q ss_pred             HHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       251 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ........+++.||+++++++|++|+. ++.   .|++++|+++++|.+|+|+|.
T Consensus        85 ~~~~~~~~~~~~gI~~~~g~~V~~id~-~~~---~V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          85 VSAQDLPHIENGGVAVLTGKKVVQLDV-RDN---MVKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             BCTTTTTTSTTCEEEEEETCCEEEEEG-GGT---EEEETTSCEEEEEEEEECCCE
T ss_pred             hhhhhHHHHHHCCeEEEeCCEEEEeec-cCc---eeeeccceeeccceEEEeeee
Confidence            001112345678999999999999985 233   588999999999999999983

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=6.2e-08  Score=80.26  Aligned_cols=37  Identities=24%  Similarity=0.322  Sum_probs=32.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+||+|||+|+|||+||.++++.+. ..+|+|+||...
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~-g~~V~lleK~~~   41 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVYP   41 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSCG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCC-CCEEEEEECCCC
Confidence            4799999999999999999999852 458999999753

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.68  E-value=5.9e-09  Score=84.39  Aligned_cols=39  Identities=21%  Similarity=0.389  Sum_probs=35.2

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ..+.||++|||||++|+.+|..++++|.   +|+++|+.+..
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~---kv~vve~~~~l   77 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGG---RQLIVDRWPFL   77 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSS
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcc
Confidence            4567899999999999999999999998   99999987664

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.68  E-value=1e-07  Score=78.30  Aligned_cols=97  Identities=13%  Similarity=0.134  Sum_probs=78.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc----------------------------------c--cCHHH
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L--FTPSL  251 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~----------------------------------~--~~~~~  251 (306)
                      -.|+|||+|.+|+-+|..|.+.+.+++++++.+.+...                                  .  ..+.+
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~   87 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   87 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence            36899999999999999999999999999987654210                                  0  01356


Q ss_pred             HHHHHHHHHHcCC--EEEcCceEEEEEeCC-CCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          252 AQRYEQLYQQNGV--KFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       252 ~~~~~~~~~~~gv--~i~~~~~v~~i~~~~-~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .+.+++.+++.++  .|.++++|++++.++ ++.+ .|++.++++.++|.+|+|||.
T Consensus        88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W-~V~~~~~~~~~~~~~i~atG~  143 (298)
T d1w4xa1          88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW-TVDTNHGDRIRARYLIMASGQ  143 (298)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEE-EEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCce-eeccccccccccceEEEeecc
Confidence            6777888888888  599999999998533 4566 699999999999999999995

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=2.9e-09  Score=84.70  Aligned_cols=37  Identities=22%  Similarity=0.271  Sum_probs=32.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+|+||||||+|++||.++++.+....+|+++|++..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~   38 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI   38 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence            5899999999999999999998875568999998653

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.67  E-value=4.9e-08  Score=81.76  Aligned_cols=97  Identities=16%  Similarity=0.091  Sum_probs=72.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCccccc---------------------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQR---------------------------------------  245 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~~~---------------------------------------  245 (306)
                      -|+|+|||+|.+|+.+|..|.+.+  .+|+++++++.+.+.                                       
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            478999999999999999998766  489999999765200                                       


Q ss_pred             --------------------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC---C---E
Q 021871          246 --------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---S---T  293 (306)
Q Consensus       246 --------------------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G---~---~  293 (306)
                                                .....+.+.+....+..+..|+++++|++|+. .++++ .|++.++   +   .
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~-~~~~w-~Vt~~~~~~~~~~~~  161 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEK-KDGSW-VVTYKGTKAGSPISK  161 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEE-ETTEE-EEEEEESSTTCCEEE
T ss_pred             hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEe-cCCEE-EEEEEecCCCCeEEE
Confidence                                      00124556666666677888999999999997 46665 3554332   2   4


Q ss_pred             EecCEEEEecCC
Q 021871          294 IDADTVILLPYD  305 (306)
Q Consensus       294 i~~d~vv~a~g~  305 (306)
                      ..+|.||+|+|.
T Consensus       162 ~~~d~VI~AtG~  173 (335)
T d2gv8a1         162 DIFDAVSICNGH  173 (335)
T ss_dssp             EEESEEEECCCS
T ss_pred             EEeeEEEEcccc
Confidence            569999999995

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.66  E-value=8.7e-09  Score=83.54  Aligned_cols=44  Identities=23%  Similarity=0.265  Sum_probs=35.8

Q ss_pred             HHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       259 ~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      .+..+.++..++.+..+... ++.+ .|++.+|+.+++|.++++.+
T Consensus       220 ~~~~~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~d~~~~~~~  263 (347)
T d1b5qa1         220 GKIVDPRLQLNKVVREIKYS-PGGV-TVKTEDNSVYSADYVMVSAS  263 (347)
T ss_dssp             CCBCCTTEESSCCEEEEEEC-SSCE-EEEETTSCEEEESEEEECSC
T ss_pred             hhhccccccccccccccccc-CccE-EEEECCCCEEEcCEEEeecC
Confidence            34557889999999999974 4454 58999999999999998865

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.66  E-value=1.2e-08  Score=87.07  Aligned_cols=37  Identities=35%  Similarity=0.529  Sum_probs=33.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH------cCCCCCcEEEeccCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVE------HGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~------~g~~~~~V~vie~~~~~~   90 (306)
                      .+|||||||||||++||+.|++      .|+   +|+|+||....+
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl---~VlllEK~~~pG   74 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDL---RVCLVEKAAHIG   74 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCC---CEEEECSSSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCC---EEEEEcCCCCCC
Confidence            4899999999999999999998      677   999999987654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.66  E-value=2.9e-08  Score=79.76  Aligned_cols=37  Identities=16%  Similarity=0.334  Sum_probs=33.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...++|+|||||++||++|++|+++|+   +|+|+|++..
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~---~V~vier~~~   40 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGY---SVHILARDLP   40 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSCT
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCC---CEEEEeCCCC
Confidence            345799999999999999999999998   9999999753

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.66  E-value=3.3e-08  Score=74.97  Aligned_cols=94  Identities=22%  Similarity=0.320  Sum_probs=67.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcccccccCHHHHH---------HHHHHHHHcCCEEEcCceEEEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLAQ---------RYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      +++|+|||+|..|+++|..|.+.+  .+|+++++.+.+......+....         .....+..+++++..++ +..+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDS-ATGI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCC-EEEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeee-eEee
Confidence            789999999999999999999876  47899999887654322221111         11244566788887663 4444


Q ss_pred             EeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          276 EAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      ..  ...  .+.+.+++.+.+|.+|||||.
T Consensus        81 ~~--~~~--~~~~~~~~~i~~D~li~atG~  106 (186)
T d1fcda1          81 DP--DKK--LVKTAGGAEFGYDRCVVAPGI  106 (186)
T ss_dssp             CT--TTT--EEEETTSCEEECSEEEECCCE
T ss_pred             ee--ccc--eeecccceeeccceEEEEecc
Confidence            42  333  467888999999999999985

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.62  E-value=1.2e-08  Score=84.45  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=33.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ++|+|||||++||+||++|++.|+   +|+|+|+++..+
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~---~V~vlE~~~~~G   37 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGL---NVTVFEAEGKAG   37 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSC---EEEEECSSSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC---CEEEEeCCCCCc
Confidence            689999999999999999999999   999999987754

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=8.1e-09  Score=81.86  Aligned_cols=38  Identities=32%  Similarity=0.419  Sum_probs=34.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      .++|||+|||||||||+||.++++.|+   +|+|+|+.+..
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~---kV~lie~~~~~   40 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGF---NTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSS
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCCc
Confidence            457999999999999999999999998   99999987654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.60  E-value=2.2e-08  Score=78.65  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=33.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      +.|||+||||||+||++|.++++.|.   +|+|+|++...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~---kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGF---KTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCCC
Confidence            46999999999999999999999998   99999987654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.58  E-value=2e-08  Score=83.42  Aligned_cols=37  Identities=22%  Similarity=0.444  Sum_probs=34.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      +++|+|||||++||+||++|++.|+   +|+|+|+++..+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~---~V~viEk~~~iG   38 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGH---QVHIIDQRDHIG   38 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC---CEEEEECCCCCc
Confidence            5799999999999999999999998   999999998875

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.58  E-value=2.6e-08  Score=76.67  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=33.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      .+++|+|||||++||+||++|+++|++  +|+|+|+.+..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~--~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYS--DITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCC--eEEEEEecCcc
Confidence            357999999999999999999999984  59999998764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.55  E-value=2.4e-08  Score=78.99  Aligned_cols=36  Identities=25%  Similarity=0.425  Sum_probs=33.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      .|||+||||||+||+||.+|+++|+   +|+|||+.+..
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~G~---~V~viE~~~~~   41 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADEGL---KVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSCS
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCC---eEEEEeccCCC
Confidence            5899999999999999999999998   99999987653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.55  E-value=2.3e-07  Score=63.83  Aligned_cols=77  Identities=17%  Similarity=0.164  Sum_probs=58.1

Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEE
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~  284 (306)
                      ..+++|+|||+|.||.|+|.+|+..+++++++.+.+.....               ..++...  ..+.+++.  .++  
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~~~~~--~~i~~~~~--~~~--   88 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NESLQQV--PEITKFDP--TTR--   88 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSSEEEE--CCEEEEET--TTT--
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------cccceec--CCeeEEec--CCC--
Confidence            46899999999999999999999999998888776654331               1123222  34777774  333  


Q ss_pred             EEEeCCCCEEe-cCEEEEe
Q 021871          285 AVKLEDGSTID-ADTVILL  302 (306)
Q Consensus       285 ~v~~~~G~~i~-~d~vv~a  302 (306)
                      .+.+.+|+.+. .|.||+|
T Consensus        89 ~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          89 EIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEEETTTEEECCCSEEEEC
T ss_pred             EEEEcCCCEEeCCCEEEEC
Confidence            48899998877 6999998

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.50  E-value=7.9e-07  Score=69.24  Aligned_cols=95  Identities=18%  Similarity=0.257  Sum_probs=69.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc----------c-------ccc---C---HHHHHHHHHHHH-HcCC
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------Q-------RLF---T---PSLAQRYEQLYQ-QNGV  264 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~----------~-------~~~---~---~~~~~~~~~~~~-~~gv  264 (306)
                      .|+|||+|+.|++.|...++.+.++.++.....-.          .       +..   .   ......+++.+. ..|+
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            48999999999999999999999999987642110          0       000   0   113334455554 3488


Q ss_pred             EEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          265 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       265 ~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .++.+ +|+.+.. +++++.+|.+.+|.++.++.||+|||.
T Consensus        84 ~i~q~-~V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGT  122 (230)
T d2cula1          84 HLFQA-TATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGS  122 (230)
T ss_dssp             EEEEC-CEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             HHHhc-cceeeEe-cccceeeEEeccccEEEEeEEEEccCc
Confidence            88877 5667665 577888999999999999999999984

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.50  E-value=4.1e-08  Score=80.43  Aligned_cols=35  Identities=14%  Similarity=0.318  Sum_probs=32.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++||+||||||+||++|..|++.|+   +|+|+|+.+.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~---~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCC
Confidence            4699999999999999999999999   9999999763

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.48  E-value=3.8e-07  Score=71.64  Aligned_cols=125  Identities=18%  Similarity=0.139  Sum_probs=79.6

Q ss_pred             CCCCCCCCCCEEEEccHHHHHHHHHh---------hhcCCeEEEEcCCHHHHHHHHHHHhC-------------------
Q 021871          178 PEKIGGYLPGVHYIRDVADADALISS---------LEKAKKVVVVGGGYIGMEVAAAAVGW-------------------  229 (306)
Q Consensus       178 ~~~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~~~v~viG~g~~a~e~a~~l~~~-------------------  229 (306)
                      ..+||.+.+|++...++..   +.+.         ...+++|+|||+|++|+|+|..+.+.                   
T Consensus         4 L~IPGedl~gV~~A~dfl~---~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~   80 (225)
T d1cjca1           4 LDIPGEELPGVFSARAFVG---WYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ   80 (225)
T ss_dssp             CCCTTTTSTTEEEHHHHHH---HHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHT
T ss_pred             CCCCCCCCCCcEeHHHHHH---HHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhc
Confidence            3578888999887543321   1111         01378999999999999999999873                   


Q ss_pred             --CCcEEEEecCCcccccccCHHHH-----------------------------------HHHHHHH-------------
Q 021871          230 --KLDTTIIFPENHLLQRLFTPSLA-----------------------------------QRYEQLY-------------  259 (306)
Q Consensus       230 --~~~v~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~-------------  259 (306)
                        ..+|+++.|....-..+-++++.                                   +.+.+.+             
T Consensus        81 ~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (225)
T d1cjca1          81 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRA  160 (225)
T ss_dssp             CCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             cCCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhccccccccccc
Confidence              36899999886532211111111                                   1111111             


Q ss_pred             -HHcCCEEEcCceEEEEEeCCCC-cEEEEEeCC---------------CC--EEecCEEEEecCC
Q 021871          260 -QQNGVKFVKGASIKNLEAGSDG-RVAAVKLED---------------GS--TIDADTVILLPYD  305 (306)
Q Consensus       260 -~~~gv~i~~~~~v~~i~~~~~~-~v~~v~~~~---------------G~--~i~~d~vv~a~g~  305 (306)
                       ..+++.+.+.....++..++++ ++.++++..               |+  .++||.||.|+|.
T Consensus       161 ~~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         161 SASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             TCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             ccccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence             2346889999889998865544 565554321               22  5899999999983

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.46  E-value=8.8e-08  Score=75.88  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++|||+||||||||++||.++++.|..  .|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k--~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKK--RVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCC--CEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCC--EEEEEEeecc
Confidence            579999999999999999999998864  7999998644

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=1.2e-06  Score=66.87  Aligned_cols=96  Identities=17%  Similarity=0.209  Sum_probs=73.4

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc---------------ccccCHHHHHHHHHHHHHcCCEEEcCc
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------QRLFTPSLAQRYEQLYQQNGVKFVKGA  270 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~gv~i~~~~  270 (306)
                      ++++|+|||+|++|++.|..+++.+.+++++.+.+...               .......+.+.+...+.+.++++..+ 
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   82 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence            35689999999999999999999999999998754311               11124567777888888999999876 


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          271 SIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       271 ~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .|+.+...+ +.. .+.... ..+.++.+++++|.
T Consensus        83 ~V~~~~~~~-~~~-~v~~~~-~~~~~~~viva~G~  114 (190)
T d1trba1          83 HINKVDLQN-RPF-RLNGDN-GEYTCDALIIATGA  114 (190)
T ss_dssp             CEEEEECSS-SSE-EEEESS-CEEEEEEEEECCCE
T ss_pred             eeEEEecCC-CcE-EEEEee-eeEeeeeeeeecce
Confidence            688888643 332 466554 48999999999983

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.43  E-value=7.5e-07  Score=67.45  Aligned_cols=96  Identities=23%  Similarity=0.331  Sum_probs=69.6

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc--------------cCHHHHHHHHHHHHHcCCEEEcCce
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------------FTPSLAQRYEQLYQQNGVKFVKGAS  271 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~gv~i~~~~~  271 (306)
                      ..++|+|||+|.+|+|+|..|.+.+.+++++...+......              ................++.+..+..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            36799999999999999999999998887766554322100              0111112234556777888999988


Q ss_pred             EEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          272 IKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       272 v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      +..++. +..   .+.+.++.++++|.++|++|.
T Consensus        82 ~~~~~~-~~~---~v~~~~~~~i~~d~~i~~~G~  111 (185)
T d1q1ra1          82 VTAINR-DRQ---QVILSDGRALDYDRLVLATGG  111 (185)
T ss_dssp             EEEEET-TTT---EEEETTSCEEECSEEEECCCE
T ss_pred             eeeecc-ccc---EEEeeceeEEEeeeeeeeeec
Confidence            888884 233   477888899999999999984

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.43  E-value=9.1e-08  Score=75.04  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=32.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+||+||||||+||+||.++++.|.   +|+|+|+...
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~---kV~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQ---KVTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---EEEEEecCCC
Confidence            4899999999999999999999998   9999999754

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=8.9e-08  Score=75.07  Aligned_cols=35  Identities=26%  Similarity=0.517  Sum_probs=32.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +|||+||||||+|++||.++++.|.   +|+|+|++..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~---kV~vIEk~~~   37 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGA---RAAVVESHKL   37 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC---EEEEEeccCC
Confidence            4899999999999999999999998   9999998754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.39  E-value=3.8e-07  Score=67.37  Aligned_cols=74  Identities=19%  Similarity=0.133  Sum_probs=54.6

Q ss_pred             CcEEEE--cCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           52 REFVIV--GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        52 ~~vvII--GgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++||  |||+.|+.+|..|+++|.   +|+++++.+.....        ..+                 .....+.+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~---~Vtlv~~~~~~~~~--------~~~-----------------~~~~~~~~~   91 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGH---EVTIVSGVHLANYM--------HFT-----------------LEYPNMMRR   91 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTC---EEEEEESSCTTTHH--------HHT-----------------TCHHHHHHH
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCC---eEEEEecCCccccc--------cch-----------------hHHHHHHHH
Confidence            456665  999999999999999998   99999987653110        000                 002346677


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEE
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTL  153 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v  153 (306)
                      +.+.+++++.++++.++....-.+
T Consensus        92 l~~~GV~i~~~~~v~~i~~~~v~l  115 (156)
T d1djqa2          92 LHELHVEELGDHFCSRIEPGRMEI  115 (156)
T ss_dssp             HHHTTCEEEETEEEEEEETTEEEE
T ss_pred             HhhccceEEeccEEEEecCcceEE
Confidence            888999999999999988654433

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.39  E-value=1.4e-07  Score=76.52  Aligned_cols=37  Identities=14%  Similarity=0.275  Sum_probs=33.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      +.||+|||||++||++|..|++.|+.  +|+|+|+.+..
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~--~V~V~Er~~~~   37 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIG--KVTLLESSSEI   37 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCC--eEEEEeCCCCC
Confidence            36999999999999999999999953  89999998764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=1.8e-06  Score=68.52  Aligned_cols=36  Identities=17%  Similarity=0.070  Sum_probs=33.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  244 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~  244 (306)
                      .|+|||+|.+|+-.|..|++.|.+|+++++++.+.+
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG   42 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   42 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCc
Confidence            489999999999999999999999999999987654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=5.1e-07  Score=67.07  Aligned_cols=46  Identities=17%  Similarity=0.284  Sum_probs=35.4

Q ss_pred             hhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc-EEecCcEEEeeCC
Q 021871          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGC  172 (306)
Q Consensus       127 ~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~-~~~~~~lila~G~  172 (306)
                      ...++..++++..++++..++.++..+...+.+ .+.+|.+|+|+|.
T Consensus       115 ~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         115 RTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             HHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             HHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCCC
Confidence            455677899999999999998766555544332 6899999999994

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.35  E-value=1.5e-07  Score=78.63  Aligned_cols=56  Identities=13%  Similarity=0.095  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      ..+...+.+.+++.|++++.++++.++.. +++++.++..   .+|+  .+.++.||+|||-
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~-~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG  218 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHhccccccceeeeeeccc-ccccccceeEEeccCCcEEEEecCeEEEeccc
Confidence            44566677778888999999999988775 5666655544   4565  4788999999974

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.34  E-value=2.7e-06  Score=68.06  Aligned_cols=98  Identities=17%  Similarity=0.237  Sum_probs=72.3

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc-----cCHH------------------------------
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTPS------------------------------  250 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~-----~~~~------------------------------  250 (306)
                      ..++|+|||+|..|+-+|..|++.|.+|+++++.+......     +.+.                              
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   82 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence            36799999999999999999999999999999875421100     0010                              


Q ss_pred             --------------HHHHHH-HHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          251 --------------LAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       251 --------------~~~~~~-~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                                    ....+. ......++.++.++.++.+... ++.+ .+++++|+++++|.+|.|.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~v-~v~~~dG~~~~~d~~v~adG~  150 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQD-SETV-QMRFSDGTKAEANWVIGADGG  150 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEEC-SSCE-EEEETTSCEEEESEEEECCCT
T ss_pred             ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEee-CCce-EEEECCCCEEEEEEEeccccc
Confidence                          111111 2223457889999999999974 4444 689999999999999999874

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.33  E-value=1.6e-07  Score=79.46  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=33.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...+||||||+|++|+.+|.+|++.|+   +|+|+|+...
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~---kVlvLEaG~~   38 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGY---KVAMFDIGEI   38 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCC---eEEEEecCCC
Confidence            346899999999999999999999998   9999999754

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.33  E-value=2.1e-07  Score=73.96  Aligned_cols=38  Identities=13%  Similarity=0.227  Sum_probs=33.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      +.|||+||||||||++||.++++.|.+  +|.|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k--~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKK--RVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCC--CEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCC--EEEEEEEeccC
Confidence            579999999999999999999999853  79999987653

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.27  E-value=2.8e-06  Score=64.82  Aligned_cols=94  Identities=16%  Similarity=0.162  Sum_probs=71.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc--------------------ccccCHHHHHHHHHHHHHcCCEE
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------QRLFTPSLAQRYEQLYQQNGVKF  266 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~gv~i  266 (306)
                      .++|+|||+|++|++.|..+++.+.++.++.+.....                    .....+++...+.+.+++.|+++
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i   84 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   84 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence            5689999999999999999999999999997654311                    11124577778888888899999


Q ss_pred             EcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871          267 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       267 ~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ..+ .|.+++..++..  .+.+.. ....+|.+++++|
T Consensus        85 ~~~-~V~~~~~~~~~~--~v~~~~-~~~~~~~~~~a~g  118 (192)
T d1vdca1          85 FTE-TVTKVDFSSKPF--KLFTDS-KAILADAVILAIG  118 (192)
T ss_dssp             ECC-CCCEEECSSSSE--EEECSS-EEEEEEEEEECCC
T ss_pred             eee-eEEecccccCcE--Eecccc-eeeeeeeEEEEee
Confidence            877 688888644433  455554 4889999999987

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.25  E-value=3.8e-07  Score=76.53  Aligned_cols=37  Identities=27%  Similarity=0.411  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHH-----HcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFV-----EHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~-----~~g~~~~~V~vie~~~~~   89 (306)
                      ..|||+||||||+||++|..|+     +.|+   +|+|+|+.+..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~---~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDL---KVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTC---CEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCC---cEEEEcCCCCC
Confidence            3589999999999999999997     4688   99999998764

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=2.4e-07  Score=77.26  Aligned_cols=38  Identities=24%  Similarity=0.259  Sum_probs=34.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      .+.+||+|||+|+|||+||.+++++|.   +|+|+||....
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~---~V~lleK~~~~   42 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQ---TCALLSKVFPT   42 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTC---CCEEECSSCGG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCC---eEEEEeCCCCC
Confidence            346899999999999999999999998   99999997653

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=5.6e-07  Score=74.35  Aligned_cols=38  Identities=21%  Similarity=0.443  Sum_probs=33.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~~~~   90 (306)
                      ..+||+||||||+||+||++|+++  |+   +|+|+|+.+..+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~---~~~~~~~~~~~~   88 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDL---KVCIIESSVAPG   88 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCC---eEEEEEcCCCCc
Confidence            457999999999999999999976  66   999999987654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.11  E-value=9.3e-07  Score=74.74  Aligned_cols=37  Identities=19%  Similarity=0.303  Sum_probs=33.7

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +...+||||||+|++|+.+|.+|++.|+   +|+|+|+..
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLaeaG~---~VlvLEaG~   40 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQAGI---PTQIVEMGR   40 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSC
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            3556899999999999999999999998   999999864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.09  E-value=3.8e-06  Score=65.90  Aligned_cols=38  Identities=18%  Similarity=0.282  Sum_probs=33.6

Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      ..+|+|+|||+|.+|+|+|.++++.+.+++++.+.+.+
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~   67 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF   67 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhccccccccccce
Confidence            47899999999999999999999999888888777654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.09  E-value=3.9e-06  Score=65.20  Aligned_cols=61  Identities=20%  Similarity=0.242  Sum_probs=42.7

Q ss_pred             CCCCCCCCCCEEEEccHHHHHHHHHhh---------hcCCeEEEEcCCHHHHHHHHHHHh--------------------
Q 021871          178 PEKIGGYLPGVHYIRDVADADALISSL---------EKAKKVVVVGGGYIGMEVAAAAVG--------------------  228 (306)
Q Consensus       178 ~~~~~~~~~g~~~~~~~~~~~~~~~~~---------~~~~~v~viG~g~~a~e~a~~l~~--------------------  228 (306)
                      ..+||.+.+|++...++..   +.+..         ..+++|+|||+|++|+|+|..+..                    
T Consensus         4 L~IPGedl~gV~~A~dfl~---~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r   80 (216)
T d1lqta1           4 LNIPGEDLPGSIAAVDFVG---WYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRP   80 (216)
T ss_dssp             CCCTTTTSTTEEEHHHHHH---HHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTT
T ss_pred             CCCCCCCCCCcEeHHHHHH---HHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhh
Confidence            3578888999876533221   11110         137899999999999999998862                    


Q ss_pred             C-CCcEEEEecCCc
Q 021871          229 W-KLDTTIIFPENH  241 (306)
Q Consensus       229 ~-~~~v~~~~~~~~  241 (306)
                      . ..+|+++.|...
T Consensus        81 ~~~~~V~iv~RRg~   94 (216)
T d1lqta1          81 RGIQEVVIVGRRGP   94 (216)
T ss_dssp             CCCCEEEEECSSCG
T ss_pred             cCCceEEEEEECCh
Confidence            2 357999988754

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=1e-06  Score=72.47  Aligned_cols=37  Identities=19%  Similarity=0.330  Sum_probs=31.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      .+.+||+|||+|+|||+||+++++.|    +|+|+||.+..
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g----~V~llEK~~~~   41 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH----QVIVLSKGPVT   41 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS----CEEEECSSCTT
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC----CEEEEECCCCC
Confidence            34689999999999999999987654    79999998653

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.05  E-value=1.7e-06  Score=72.55  Aligned_cols=36  Identities=28%  Similarity=0.432  Sum_probs=31.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH----cCCCCCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVE----HGMADGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~----~g~~~~~V~vie~~~~~   89 (306)
                      .+||+|||+|+|||+||++|++    .|.   +|+|+||....
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~---~V~vieK~~~~   60 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGL---KVTLVEKAAVE   60 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTC---CEEEECSSCTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcC---EEEEEeCCCCC
Confidence            4799999999999999999986    455   99999997653

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.01  E-value=1e-05  Score=58.99  Aligned_cols=36  Identities=19%  Similarity=0.418  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|+|||||.+|+-+|..+.++|-.  .|+++.+++.
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~--~V~vi~rr~~   80 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGAR--RVFLVFRKGF   80 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCS--EEEEECSSCG
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCc--ceeEEEeCCh
Confidence            46899999999999999999999864  7889877644

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.00  E-value=2.2e-06  Score=72.22  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=31.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .||||||+|++|+.+|.+|++.|+   +|+|+|+...
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~---~VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGV---QTLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcC---eEEEEecCCC
Confidence            489999999999999999999998   9999999743

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.97  E-value=1.5e-06  Score=68.65  Aligned_cols=30  Identities=17%  Similarity=0.091  Sum_probs=25.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEecc
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSK   85 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~   85 (306)
                      +|+|||||++||++|++|+++|+   +|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~---~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYH---SVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHT---TTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCC---CceEEee
Confidence            69999999999999999999997   5544444

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.97  E-value=2.8e-06  Score=72.40  Aligned_cols=38  Identities=21%  Similarity=0.417  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+.||+||||||.+|+.+|.+|++.+  +.+|+|+|+...
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~--~~~VLlLEaG~~   59 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENP--KIKVLVIEKGFY   59 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTST--TCCEEEEESSCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCC--CCeEEEEcCCCC
Confidence            45699999999999999999999986  229999999864

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.97  E-value=2.6e-06  Score=71.72  Aligned_cols=35  Identities=23%  Similarity=0.426  Sum_probs=32.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .||+||||+|.+|+.+|.+|++.|+   +|+|+|+...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~---~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGK---KVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCC---eEEEEEccCC
Confidence            5899999999999999999999998   9999999854

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=2.5e-05  Score=54.85  Aligned_cols=88  Identities=16%  Similarity=0.271  Sum_probs=63.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +.++|+|||||.+++-.|.+|.+...   +|+++.+++.+...                               ..+.+.
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~---~V~li~r~~~~~~~-------------------------------~~~~~~   74 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVE---HVTLLEFAPEMKAD-------------------------------QVLQDK   74 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBS---EEEEECSSSSCCSC-------------------------------HHHHHH
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCC---ceEEEecccccccc-------------------------------cccccc
Confidence            35799999999999999999999876   99999887653110                               112222


Q ss_pred             Hhh-cCeEEEeCCcEEEEeCCC-C--EEEcC---CC--cEEecCcEEEeeC
Q 021871          130 YKE-KGIEMIYQDPVTSIDIEK-Q--TLITN---SG--KLLKYGSLIVATG  171 (306)
Q Consensus       130 ~~~-~~v~~~~~~~v~~v~~~~-~--~v~~~---~g--~~~~~~~lila~G  171 (306)
                      +.+ .++++++++++..+..++ .  .+.+.   ++  ..+..|.++++.|
T Consensus        75 ~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          75 LRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             HHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             cccccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            333 469999999999887653 3  23332   23  3689999999887

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=2.3e-05  Score=55.06  Aligned_cols=92  Identities=17%  Similarity=0.222  Sum_probs=64.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +.++|+|||||-+++-.|..|.+...   +|+++.+++.+...     . .+                     ...+.+.
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~---~V~li~r~~~~~~~-----~-~~---------------------~~~~~~~   75 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIAS---EVHLIHRRDGFRAE-----K-IL---------------------IKRLMDK   75 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSS---EEEEECSSSSCCCC-----H-HH---------------------HHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCC---cEEEEeecccccch-----h-HH---------------------HHHHHHh
Confidence            35799999999999999999999886   99999887653110     0 00                     0122333


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC---EEEcCC----C--cEEecCcEEEeeC
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ---TLITNS----G--KLLKYGSLIVATG  171 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~---~v~~~~----g--~~~~~~~lila~G  171 (306)
                      ....++.++.++.+.++..++.   .+.+.+    +  +.+..|.++++.|
T Consensus        76 ~~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          76 VENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             HHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             hcccceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            3446788999999988877643   244332    1  3688899999876

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=0.00015  Score=54.22  Aligned_cols=96  Identities=17%  Similarity=0.208  Sum_probs=71.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc--cc-----------ccccCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--LL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  275 (306)
                      .|+|||+|++|++.|..+++.+.+++++.+...  +.           +....+.+...+...+++.+++......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            489999999999999999999999999986421  10           11123566677777788889999998888887


Q ss_pred             EeCCCC-cEEEEEeCCCCEEecCEEEEecC
Q 021871          276 EAGSDG-RVAAVKLEDGSTIDADTVILLPY  304 (306)
Q Consensus       276 ~~~~~~-~v~~v~~~~G~~i~~d~vv~a~g  304 (306)
                      ...+.. ........++..+.++.++.++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  112 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATG  112 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCC
T ss_pred             cccccccceeeeeeecceeeeccccccccc
Confidence            753322 22345556667899999999886

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.82  E-value=5.4e-06  Score=70.39  Aligned_cols=38  Identities=18%  Similarity=0.402  Sum_probs=32.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+.+|+||||||.+|+.+|.+|.+.+  +.+|+|+|+...
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~--~~~VLvLEaG~~   52 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENP--NISVLVIESGSY   52 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTST--TCCEEEEESSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCC--CCeEEEECCCCC
Confidence            44689999999999999999999875  229999999854

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.79  E-value=0.00012  Score=59.14  Aligned_cols=96  Identities=17%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc------c-------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------R-------------------------------------  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~------~-------------------------------------  245 (306)
                      +|+|||+|++|+-+|..|++.|.+|+++++.+....      .                                     
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~~   83 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQR   83 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecccc
Confidence            799999999999999999999999999998753210      0                                     


Q ss_pred             ----------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe-CCCC--EEecCEEEEecCC
Q 021871          246 ----------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       246 ----------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~-~~G~--~i~~d~vv~a~g~  305 (306)
                                      .....+.+.+.+.+++.+..+.....+..+...+++.+ .|.. .+|+  ++.+|.||-|.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~g~~~~i~a~~vVgADG~  161 (292)
T d1k0ia1          84 RRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF  161 (292)
T ss_dssp             EEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred             cccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence                            00123555667777777777777766665554344444 3444 4454  4789999999885

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.73  E-value=5.8e-05  Score=51.31  Aligned_cols=76  Identities=16%  Similarity=0.222  Sum_probs=51.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      ..++|+|||+|.+|+-.|..|++...   +++++.+.......                                     
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak---~v~~~~~r~~~~~~-------------------------------------   70 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAK---HPIYQSLLGGGDIQ-------------------------------------   70 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSC---SSEEEECTTCCSCB-------------------------------------
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcC---EEEEEEecCccccc-------------------------------------
Confidence            35799999999999999999998875   55555543321000                                     


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEe-cCcEEEe
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLK-YGSLIVA  169 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~-~~~lila  169 (306)
                        ..++..  ...+.+++.....+.+.||..+. .|.+|+|
T Consensus        71 --~~~~~~--~~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          71 --NESLQQ--VPEITKFDPTTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             --CSSEEE--ECCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             --ccccee--cCCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence              011111  12455667777788999998776 6999987

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=97.67  E-value=0.00029  Score=57.99  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=29.8

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      .|+|||+|..|+-.|..+++.+.+|.++.+.+.
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~   39 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV   39 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSCG
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            489999999999999999999999999987543

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.67  E-value=8.5e-06  Score=68.21  Aligned_cols=34  Identities=26%  Similarity=0.527  Sum_probs=30.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .||+||||||.||+.+|.+|++. +   +|+|+|+...
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~---kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-Y---KVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-S---CEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-C---CEEEEecCCC
Confidence            58999999999999999999875 5   8999999853

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=3e-05  Score=51.32  Aligned_cols=36  Identities=17%  Similarity=0.289  Sum_probs=32.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.++|+|+|.|.+|+++|+.|.++|.   +|+++|.+..
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~---~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV---TPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC---CCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC---EEEEeeCCcC
Confidence            35789999999999999999999998   9999997644

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=0.00012  Score=59.89  Aligned_cols=51  Identities=16%  Similarity=0.251  Sum_probs=38.3

Q ss_pred             HHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       254 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      .+.+..+..+|+++.++++.++.. +++++.++..   .+|+  .+.++.||+|||-
T Consensus       140 ~l~~~~~~~~v~i~~~~~v~~Ll~-d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG  195 (311)
T d1kf6a2         140 LFQTSLQFPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (311)
T ss_dssp             HHHHHTTCTTEEEEETEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             HHHHHHccCcceeEeeeEeeeeEe-cCCcceeEEEEEcCCCcEEEEECCEEEEcCCC
Confidence            344555556899999999999876 5777777653   5565  3579999999984

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.58  E-value=0.00015  Score=55.88  Aligned_cols=34  Identities=35%  Similarity=0.404  Sum_probs=31.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      .|+|||+|+.|+..|..+++.+.+|.++.+.+.+
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~   38 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   38 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            5899999999999999999999999999987654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.56  E-value=0.00014  Score=51.10  Aligned_cols=87  Identities=20%  Similarity=0.288  Sum_probs=60.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (306)
                      +.++|+|||||.+++-.|.+|++.-.   +|+++.+++.+...                              .....+.
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~---~V~li~r~~~~ra~------------------------------~~~~~~l   79 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGS---KVYIIHRRDAFRAS------------------------------KIMQQRA   79 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSS---EEEEECSSSSCCSC------------------------------HHHHHHH
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCC---cEEEEEeccccccc------------------------------hhhhhcc
Confidence            45899999999999999999998876   99999887663111                              0112222


Q ss_pred             HhhcCeEEEeCCcEEEEeCCCC-----EEEc---CCC--cEEecCcEEEe
Q 021871          130 YKEKGIEMIYQDPVTSIDIEKQ-----TLIT---NSG--KLLKYGSLIVA  169 (306)
Q Consensus       130 ~~~~~v~~~~~~~v~~v~~~~~-----~v~~---~~g--~~~~~~~lila  169 (306)
                      ....++++++++++..+..+..     .+.+   .++  ..+.+|.+.+|
T Consensus        80 ~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa  129 (130)
T d1vdca2          80 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA  129 (130)
T ss_dssp             HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             ccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence            3335699999999998875432     2322   223  36888888776

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.51  E-value=0.00068  Score=53.85  Aligned_cols=97  Identities=13%  Similarity=0.132  Sum_probs=67.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcccccc----cC---------------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRL----FT---------------------------------  248 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~~~~~----~~---------------------------------  248 (306)
                      +-+|+|||+|.+|+-+|..|++.|. +|+++.+.+.+....    +.                                 
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g   80 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   80 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence            3479999999999999999999995 899999987642100    00                                 


Q ss_pred             -----------------------HHHHHHHHHH--HHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC----CEEecCEE
Q 021871          249 -----------------------PSLAQRYEQL--YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTV  299 (306)
Q Consensus       249 -----------------------~~~~~~~~~~--~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G----~~i~~d~v  299 (306)
                                             ......+.+.  ....++.+..+++++.+...+++.  .+.+.+|    +++.+|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v--~v~~~~g~~~~~~~~ad~v  158 (288)
T d3c96a1          81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRV--LIGARDGHGKPQALGADVL  158 (288)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEE--EEEEEETTSCEEEEEESEE
T ss_pred             CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcE--EEEEEcCCCCeEEEeecee
Confidence                                   0111122222  234588999999999988744444  3555554    36899999


Q ss_pred             EEecCC
Q 021871          300 ILLPYD  305 (306)
Q Consensus       300 v~a~g~  305 (306)
                      |.|-|.
T Consensus       159 i~ADG~  164 (288)
T d3c96a1         159 VGADGI  164 (288)
T ss_dssp             EECCCT
T ss_pred             eccCCc
Confidence            999874

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.49  E-value=9.1e-06  Score=63.86  Aligned_cols=39  Identities=18%  Similarity=0.206  Sum_probs=35.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  244 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~  244 (306)
                      .+++|+|||+|+.|+..|..|++.+.+++++.+.+.+..
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG   86 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGG   86 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCC
Confidence            578999999999999999999999999999999887643

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.47  E-value=0.00016  Score=57.34  Aligned_cols=31  Identities=26%  Similarity=0.434  Sum_probs=29.0

Q ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871          210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (306)
Q Consensus       210 v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~  240 (306)
                      ++|||+|+.|+..|..+++.+.+|.++++..
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            7899999999999999999999999999753

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.47  E-value=0.00026  Score=53.34  Aligned_cols=67  Identities=19%  Similarity=0.213  Sum_probs=51.4

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceE
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASI  272 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v  272 (306)
                      .++||+|||+|++|++.|..|++.|. .|+++.+.+.+.+.        ...............+.+..+.....+
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   78 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSL   78 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCB
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEe
Confidence            47899999999999999999999997 59999999887542        123444555555666677877777665

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.31  E-value=0.0011  Score=52.85  Aligned_cols=98  Identities=20%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHh-CCCcEEEEecCCccccccc--------------------------------------
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLLQRLF--------------------------------------  247 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~-~~~~v~~~~~~~~~~~~~~--------------------------------------  247 (306)
                      ...|+|||+|++|+..|..|++ .|.+|+++++++.+.....                                      
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  112 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  112 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceeccc
Confidence            4569999999999999999987 5999999999875431100                                      


Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC--------------CCCEEecCEEEEecCC
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------------DGSTIDADTVILLPYD  305 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~--------------~G~~i~~d~vv~a~g~  305 (306)
                      ...+...+.+.++..++.+..++.+..+.. +++++.++...              ++..+.++.+|.|+|.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~  183 (278)
T d1rp0a1         113 ALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGH  183 (278)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCcceeeee-cCCeEEEEEeccceeeeeecccccccceeeccceEEECcCC
Confidence            012333445556677899999999988776 45555555431              1246889999999985

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.30  E-value=9.2e-05  Score=55.15  Aligned_cols=35  Identities=9%  Similarity=0.339  Sum_probs=32.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+.|+|||+|..|..+|++|.+.|+   +|+|++++..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~---~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI---KVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC---EEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---EEEEEECChH
Confidence            4789999999999999999999998   9999998754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.0016  Score=49.69  Aligned_cols=88  Identities=22%  Similarity=0.313  Sum_probs=60.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------------------------ccC----
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------LFT----  248 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------~~~----  248 (306)
                      .++|||+|+.|+..|..+++.+.+|.+++++. +...                                    .++    
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   82 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence            37999999999999999999999999998753 1100                                    000    


Q ss_pred             --------HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          249 --------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       249 --------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                              ..+...+...+++.||+++..........       .+ ..++..+.++.+++|||.
T Consensus        83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~-------~~-~~~~~~~~~~~~iiatG~  139 (217)
T d1gesa1          83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAK-------TL-EVNGETITADHILIATGG  139 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETT-------EE-EETTEEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceee-------ee-cCCCceeeeeeeeeecCc
Confidence                    01223345557788998887754432221       12 335678999999999984

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.19  E-value=0.00019  Score=53.58  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=30.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ++++|||+|..|+.+|..|+++|+   +|+++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~---~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ---SVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            689999999999999999999999   999999864

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.0027  Score=51.88  Aligned_cols=55  Identities=20%  Similarity=0.190  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE---EEeCCCC--EEecCEEEEecCC
Q 021871          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLEDGS--TIDADTVILLPYD  305 (306)
Q Consensus       251 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~---v~~~~G~--~i~~d~vv~a~g~  305 (306)
                      +...+.+..++.+++++..+.+..+...+++.+.+   ....+|+  .+.++.||+|||-
T Consensus       145 i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG  204 (330)
T d1neka2         145 LLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG  204 (330)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCC
T ss_pred             HHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCC
Confidence            34455666777899999998888876545554433   3445665  4779999999984

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.99  E-value=0.0026  Score=50.17  Aligned_cols=34  Identities=21%  Similarity=0.123  Sum_probs=31.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      .++|||+|+.|++.|..+++.+.+++++.+.+.+
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~l   77 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   77 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcc
Confidence            4899999999999999999999999999987664

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.97  E-value=0.00034  Score=49.24  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=31.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+|+|+|+|..|...|..|.+.|+   +|+++|+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~---~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGH---DIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC---CcceecCChh
Confidence            379999999999999999999998   9999998744

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.95  E-value=0.00065  Score=49.12  Aligned_cols=39  Identities=10%  Similarity=0.181  Sum_probs=33.2

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.++++|+|||+|..|.++|+.|...++.  +++++|.++.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~--el~L~D~~~~   42 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVKG   42 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCc--eEEEEEeccc
Confidence            45678999999999999999999998874  8999986543

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.94  E-value=0.0027  Score=48.49  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      -.++|||+|+.|++.|..+++.+.+|+++.++
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            46899999999999999999999999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.90  E-value=0.00046  Score=48.64  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=31.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++++|||.|..|..+|..|.+.|+   +|+++|+++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~---~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH---EVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC---CCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC---eEEEecCcHH
Confidence            479999999999999999999998   9999998754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.79  E-value=0.00048  Score=53.50  Aligned_cols=88  Identities=13%  Similarity=0.093  Sum_probs=61.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC-------CcEEEEecCCcccccc---------cCHHHHHHHHHHHHHcCCEEEcCc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWK-------LDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGA  270 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~-------~~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gv~i~~~~  270 (306)
                      +.+|+|||+|++|+..|..|++.|       .+|+++.+.+.+....         ....+.+.....+.+.|+++++++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            568999999999999999998875       4799999998765311         122445566677788899999997


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          271 SIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       271 ~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                      .+....     .     .+ .-...+|.+++|||.
T Consensus        82 ~v~~~~-----~-----~~-~~~~~~~~v~~atGa  105 (239)
T d1lqta2          82 VVGEHV-----Q-----PG-ELSERYDAVIYAVGA  105 (239)
T ss_dssp             CBTTTB-----C-----HH-HHHHHSSEEEECCCC
T ss_pred             Eecccc-----c-----hh-hhhccccceeeecCC
Confidence            652111     0     00 012357888888874

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.73  E-value=0.0046  Score=47.09  Aligned_cols=91  Identities=25%  Similarity=0.197  Sum_probs=59.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc------------------------------c----ccccC------
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------------------L----QRLFT------  248 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~------------------------------~----~~~~~------  248 (306)
                      .++|||+|+.|+..|..+++.+.+|.++.+...-                              .    ...+.      
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQE   84 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHhh
Confidence            5899999999999999999999999999876410                              0    00000      


Q ss_pred             ------HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC-CCEEecCEEEEecC
Q 021871          249 ------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTVILLPY  304 (306)
Q Consensus       249 ------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~-G~~i~~d~vv~a~g  304 (306)
                            ..+...+...++..+|+++.+.-  .+..  .... .+.... +..+.+|.+|+|++
T Consensus        85 ~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~~--~~~~-~v~~~~~~~~~~~~~iiIa~g  142 (223)
T d1ebda1          85 WKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFVD--ANTV-RVVNGDSAQTYTFKNAIIATG  142 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEEE--TTEE-EEEETTEEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHhhHHHhhhccceeeeccEE--EEcc--Cccc-ceeccccceEEecccEEEEcC
Confidence                  11233345566778999987742  2332  2222 233333 35789999999875

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.72  E-value=0.001  Score=48.24  Aligned_cols=36  Identities=28%  Similarity=0.345  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+.+|+|||+|.+|+.|+..+.+.|-   +|+++|.+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA---~V~~~D~~~~   66 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA---QVQIFDINVE   66 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC---EEEEEeCcHH
Confidence            46799999999999999999999997   9999998643

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.64  E-value=0.0014  Score=48.27  Aligned_cols=36  Identities=19%  Similarity=0.089  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+.+|+|||+|.+|+.||......|-   .|+++|.+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA---~V~v~D~~~~   63 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA---VVMATDVRAA   63 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCST
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC---EEEEEeccHH
Confidence            35799999999999999999999997   9999998755

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.64  E-value=0.001  Score=53.49  Aligned_cols=37  Identities=30%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~  243 (306)
                      +|+|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G   37 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   37 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            4899999999999999999999999999999987653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0012  Score=48.19  Aligned_cols=34  Identities=9%  Similarity=0.099  Sum_probs=31.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++|+|||+|.-|...|..|++.|+   +|+++++++.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~---~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH---EVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC---ceEEEEcCHH
Confidence            379999999999999999999999   9999998754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.00066  Score=48.90  Aligned_cols=35  Identities=20%  Similarity=0.467  Sum_probs=31.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      .+.++|+|||||..|+.-|..|.+.|-   +|+|+.++
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA---~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC---KLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC---EEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            456899999999999999999999997   99999765

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.56  E-value=0.0014  Score=44.54  Aligned_cols=36  Identities=36%  Similarity=0.565  Sum_probs=32.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      -+.++|+|||||..|..-|+.|.+.|-   +|+++++..
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga---~v~v~~~~~   45 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGA---RLTVNALTF   45 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB---EEEEEESSC
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEeccC
Confidence            456899999999999999999999997   999998653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.56  E-value=0.0015  Score=46.69  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=31.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ++++|+|||+|..|.++|+.|+..+. -.++.++|.++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~-~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC-CcEEEEeeccc
Confidence            45799999999999999999999986 23799999754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0017  Score=48.77  Aligned_cols=37  Identities=16%  Similarity=0.250  Sum_probs=33.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++.++|+|||+|.-|...|..++..|+   +|+++|+++.
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~---~V~l~D~~~~   38 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGH---TVVLVDQTED   38 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCC---cEEEEECChH
Confidence            456799999999999999999999999   9999998754

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.48  E-value=0.0059  Score=47.10  Aligned_cols=96  Identities=21%  Similarity=0.303  Sum_probs=59.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC---CcEEEEecCCc--------------cc------------cc----------ccC-
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENH--------------LL------------QR----------LFT-  248 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~---~~v~~~~~~~~--------------~~------------~~----------~~~-  248 (306)
                      +|+|||+|+.|+..|...++.+   .+|.++.+..-              ++            ..          .++ 
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~   82 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL   82 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence            6899999999998887776544   56888886431              00            00          000 


Q ss_pred             H-----------HHHHHHHHHHHHcCCEEEcCceEEEEEeC--CCCcEEEEEeCCCC--EEecCEEEEecCC
Q 021871          249 P-----------SLAQRYEQLYQQNGVKFVKGASIKNLEAG--SDGRVAAVKLEDGS--TIDADTVILLPYD  305 (306)
Q Consensus       249 ~-----------~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~v~~v~~~~G~--~i~~d~vv~a~g~  305 (306)
                      +           .....+...++..||+++.+... -+...  .....+.+...+|+  ++++|.+|+|||.
T Consensus        83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~-~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~  153 (233)
T d1xdia1          83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGE-LIDSTPGLARHRIKATAADGSTSEHEADVVLVATGA  153 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-ECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCE
T ss_pred             eeeccccceeeeeeecceehhhcccceeEEECccc-ccccccccccceEEEEecCCceeeeecceeeeecCc
Confidence            0           11223556678889999987422 11110  11123357777775  6899999999984

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.45  E-value=0.0022  Score=49.43  Aligned_cols=86  Identities=16%  Similarity=0.135  Sum_probs=59.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCccccc---------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871          209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR---------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~--~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  277 (306)
                      +|+|||+|+.|+..|..|.+.  +.+|+++.+.+.+...         .....+.......+++.|++++.++.|.    
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----   78 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG----   78 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT----
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeC----
Confidence            799999999999999999764  6689999999876421         1122445556677788899999888762    


Q ss_pred             CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871          278 GSDGRVAAVKLEDGSTIDADTVILLPYD  305 (306)
Q Consensus       278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~  305 (306)
                       .+-..  ..+    .-.+|.+++|||.
T Consensus        79 -~~~~~--~~l----~~~~d~v~~a~Ga   99 (230)
T d1cjca2          79 -RDVTV--QEL----QDAYHAVVLSYGA   99 (230)
T ss_dssp             -TTBCH--HHH----HHHSSEEEECCCC
T ss_pred             -ccccH--HHH----HhhhceEEEEeec
Confidence             11000  000    1247889998885

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.39  E-value=0.005  Score=43.50  Aligned_cols=82  Identities=16%  Similarity=0.211  Sum_probs=53.2

Q ss_pred             HHHHHHHH----HhCC--CcEEEEecCCcccc-cccCHHHHHHHHHHHHHcCCEEEcCce--EEEEEeCCCCcEEEEEeC
Q 021871          219 GMEVAAAA----VGWK--LDTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGAS--IKNLEAGSDGRVAAVKLE  289 (306)
Q Consensus       219 a~e~a~~l----~~~~--~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gv~i~~~~~--v~~i~~~~~~~v~~v~~~  289 (306)
                      ..+++..+    .+.+  .++.++...+.... ..+.+.+.+.+.+.++++||+++.+..  +.+++.  ..+  .+++.
T Consensus        51 P~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~--~~~--~~~~~  126 (141)
T d1fcda2          51 PYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDG--GEM--MVETA  126 (141)
T ss_dssp             HHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEE--TTT--EEEET
T ss_pred             HHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecC--CcE--EEEeC
Confidence            34444444    4443  45777766654322 112344566677777889999998764  666664  333  47789


Q ss_pred             CCCEEecCEEEEecC
Q 021871          290 DGSTIDADTVILLPY  304 (306)
Q Consensus       290 ~G~~i~~d~vv~a~g  304 (306)
                      +|+++.+|.+++-+|
T Consensus       127 ~Ge~v~yD~l~vvPP  141 (141)
T d1fcda2         127 FGDEFKADVINLIPP  141 (141)
T ss_dssp             TCCEEECSEEEECCC
T ss_pred             CCcEEeeeEEEeCCC
Confidence            999999999998765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.36  E-value=0.0015  Score=53.12  Aligned_cols=38  Identities=26%  Similarity=0.397  Sum_probs=34.5

Q ss_pred             hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      ..+++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~   65 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   65 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            35789999999999999999999999999999987654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0076  Score=45.80  Aligned_cols=32  Identities=22%  Similarity=0.358  Sum_probs=29.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~  240 (306)
                      .++|||+|+.|+..|..+++.+.+|.++++..
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            37899999999999999999999999998754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.27  E-value=0.02  Score=43.83  Aligned_cols=92  Identities=13%  Similarity=0.199  Sum_probs=62.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------c-
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------R-  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~------------------------------------------~-  245 (306)
                      .++|||+|+.|+..|..+++.+.+|.++...+....                                          . 
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            479999999999999999999999999985432100                                          0 


Q ss_pred             -ccC------------HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC--EEecCEEEEecCC
Q 021871          246 -LFT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTVILLPYD  305 (306)
Q Consensus       246 -~~~------------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~--~i~~d~vv~a~g~  305 (306)
                       ..+            ..+...+...++.++|+++.+...  +.  ..+.+ .+....++  .+.++.+++++|.
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~--~~--~~~~~-~v~~~~~~~~~i~a~~ivi~~G~  154 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK--FI--GPHKI-MATNNKGKEKVYSAERFLIATGE  154 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEE--EE--ETTEE-EEECTTSCEEEEEEEEEEECCCE
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEe--ec--cccce-ecccccccccccccccceeecCC
Confidence             000            012233456677889999988533  33  12222 46666665  4889999999984

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.26  E-value=0.0032  Score=45.18  Aligned_cols=37  Identities=30%  Similarity=0.521  Sum_probs=32.8

Q ss_pred             CCCCcEEEEc-CChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIG-gG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+.++|.||| .|.-|.+.|++|.+.|+   +|+++|+...
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~---~V~~~d~~~~   44 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGY---PISILDREDW   44 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTC---CEEEECTTCG
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCC---CcEecccccc
Confidence            4567999999 69999999999999999   9999997643

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.22  E-value=0.0036  Score=44.71  Aligned_cols=38  Identities=13%  Similarity=0.376  Sum_probs=31.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ....+|.|||+|..|.++|+.|...++ -.+++++|..+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l-~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeecc
Confidence            445799999999999999999999986 33699998653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.18  E-value=0.0032  Score=51.11  Aligned_cols=38  Identities=24%  Similarity=0.389  Sum_probs=35.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  244 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~  244 (306)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+++.+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence            57899999999999999999999999999999988765

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.18  E-value=0.0023  Score=48.41  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=30.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +|.|||.|..|+.+|..|++.|+   +|+.+|.+..
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~---~V~g~D~n~~   34 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH---EVIGVDVSST   34 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC---cEEEEeCCHH
Confidence            69999999999999999999998   9999998643

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.17  E-value=0.0034  Score=47.91  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=29.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~  240 (306)
                      .++|||+|+.|+..|..+++.+.+|.++.+..
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            38999999999999999999999999998753

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.17  E-value=0.0014  Score=49.04  Aligned_cols=37  Identities=14%  Similarity=0.135  Sum_probs=32.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.+.+|+|||+|.-|.+.|..|++.|+   +|+++.+++.
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~---~V~l~~r~~~   41 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCR---EVCVWHMNEE   41 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEE---EEEEECSCHH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCC---eEEEEEecHH
Confidence            345689999999999999999999998   9999987643

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.01  Score=47.62  Aligned_cols=50  Identities=14%  Similarity=0.221  Sum_probs=35.6

Q ss_pred             HHHHHHcCCEEEcCceEEEEEeCCC------CcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871          256 EQLYQQNGVKFVKGASIKNLEAGSD------GRVAAVKL---EDGS--TIDADTVILLPYD  305 (306)
Q Consensus       256 ~~~~~~~gv~i~~~~~v~~i~~~~~------~~v~~v~~---~~G~--~i~~d~vv~a~g~  305 (306)
                      .+.+++.+++++.++++..+..+++      +++.++..   .+|+  .+.++.||+|||-
T Consensus       145 ~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG  205 (305)
T d1chua2         145 SKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGG  205 (305)
T ss_dssp             HHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCC
T ss_pred             HHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeec
Confidence            3555667899999999988765332      25667765   2343  4789999999984

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0033  Score=51.26  Aligned_cols=39  Identities=23%  Similarity=0.447  Sum_probs=35.4

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  244 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~  244 (306)
                      +..+|+|||+|.+|+-.|..|++.|.+|++++.++++.+
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG   42 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence            456899999999999999999999999999999888754

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.04  E-value=0.0043  Score=43.93  Aligned_cols=35  Identities=11%  Similarity=0.246  Sum_probs=30.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++|.|||+|..|.++|+.|...+..  ++.++|..+.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~--dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcc--eEEEEeeccc
Confidence            5899999999999999999998874  7999986543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.00  E-value=0.0038  Score=46.49  Aligned_cols=35  Identities=14%  Similarity=0.196  Sum_probs=32.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .++|+|||+|.-|...|..+++.|+   +|+++|+++.
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~---~V~l~D~~~~   38 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGT---PILMKDINEH   38 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTC---CEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC---eEEEEECCHH
Confidence            4689999999999999999999999   9999998654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.89  E-value=0.028  Score=37.70  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=31.2

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      .+++|+|||+|.+|..-+..|.+.+.+++++.+.
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4799999999999999999999999999998764

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.88  E-value=0.0072  Score=43.53  Aligned_cols=39  Identities=18%  Similarity=0.317  Sum_probs=32.2

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+++.+|.|||+|..|.++|+.|...++ -.++.++|..+
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l-~~elvL~D~~~   54 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGL-ADELALVDADT   54 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTS-CSEEEEECSCH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCc
Confidence            3455689999999999999999999987 33699998653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.86  E-value=0.0043  Score=49.43  Aligned_cols=35  Identities=31%  Similarity=0.408  Sum_probs=32.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~  243 (306)
                      +|+|||+|..|+-.|..|++.|.+|+++++++.+.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   36 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            58999999999999999999999999999987653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.79  E-value=0.0058  Score=43.44  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ++|+|||+|..|.++|+.|..++. -.++.++|..+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGV-ADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeccc
Confidence            689999999999999999999886 33788888653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.73  E-value=0.0054  Score=47.90  Aligned_cols=36  Identities=28%  Similarity=0.412  Sum_probs=32.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcccc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQ  244 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~~~  244 (306)
                      +|+|||+|.+|+-.|..|++.|. +|+++++++++..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG   38 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG   38 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBT
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCc
Confidence            58999999999999999999995 6999999887654

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.67  E-value=0.0083  Score=42.38  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+|.|||+|..|.++|+.|...++ -.++.++|....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeccCC
Confidence            589999999999999999999987 337999996654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0088  Score=42.75  Aligned_cols=35  Identities=14%  Similarity=0.222  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +-+++|+|.|..|..++..|.+.|.   +|+++|.++.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~---~v~vId~d~~   37 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ---NVTVISNLPE   37 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC---CEEEEECCCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEeccch
Confidence            4579999999999999999999998   8999997643

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.61  E-value=0.0088  Score=42.26  Aligned_cols=35  Identities=11%  Similarity=0.291  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+|+|||+|..|.++|+.|..+++ -.++.++|..+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l-~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence            589999999999999999999987 33788888653

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.61  E-value=0.064  Score=44.34  Aligned_cols=81  Identities=20%  Similarity=0.247  Sum_probs=62.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHh------CCCcEEEEecCCccccc-------------------------------------
Q 021871          209 KVVVVGGGYIGMEVAAAAVG------WKLDTTIIFPENHLLQR-------------------------------------  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~------~~~~v~~~~~~~~~~~~-------------------------------------  245 (306)
                      .|+|||+|+.|.-.|..|++      .+.+|.+++++..+...                                     
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~~  113 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGI  113 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceEEE
Confidence            58999999999999999986      78999999987554200                                     


Q ss_pred             ------------------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC
Q 021871          246 ------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  289 (306)
Q Consensus       246 ------------------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~  289 (306)
                                              .....+...+.+..++.|+++..+..+..+...+++.+..+.+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~  181 (380)
T d2gmha1         114 LTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATN  181 (380)
T ss_dssp             ECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEEC
T ss_pred             eeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccc
Confidence                                    00124567788888999999999999999887677776555543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.57  E-value=0.011  Score=42.51  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=31.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+++|.|||+|..|-++|+.|...++ -.++.++|..+
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l-~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSL-ADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence            35799999999999999999999987 33799998753

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.57  E-value=0.0074  Score=43.77  Aligned_cols=32  Identities=25%  Similarity=0.235  Sum_probs=29.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|.|||.|.-|.+.|+.|.+.|+   +|+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~---~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH---YLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC---EEEEEECCc
Confidence            69999999999999999999998   899998763

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.56  E-value=0.0076  Score=46.80  Aligned_cols=34  Identities=29%  Similarity=0.424  Sum_probs=31.5

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      ..++|+|||+|..|+-.|..|++.+.+|+++++.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            3578999999999999999999999999999985

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.012  Score=39.48  Aligned_cols=38  Identities=18%  Similarity=0.229  Sum_probs=33.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ....+|.|||||.-|.-.|....+.|+   ++.++|+++..
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~---~v~v~d~~~~~   46 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGV---EVIAVDRYADA   46 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTC---EEEEEESSTTC
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCC---EEEEEcCCCCC
Confidence            345689999999999999999999999   99999998764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.51  E-value=0.01  Score=42.23  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.+|.|||+|..|.++|+.|.+.+..  ++.++|...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~--el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCC--eEEEEeccC
Confidence            35899999999999999999988874  899999654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.39  E-value=0.0078  Score=44.41  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ++|.|||+|.-|.+.|..|++.|+   +|+++.+.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~---~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGN---EVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC---EEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC---EEEEEEec
Confidence            379999999999999999999998   99998763

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.39  E-value=0.0075  Score=43.02  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=31.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      .+++++|||+|..|.+-+..|.+.|.+|+++.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5899999999999999999999999999999764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.37  E-value=0.012  Score=41.46  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +|+|||+|..|.++|+.|...+. -.++.++|..+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l-~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQL-ARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CceEEEeccccc
Confidence            69999999999999999999986 237999996643

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.0087  Score=48.03  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=33.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  245 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~  245 (306)
                      .++|||+|.+|+-+|..|++.|.+|+++++.+++.+.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~   39 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence            5899999999999999999999999999998887653

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.032  Score=37.61  Aligned_cols=37  Identities=19%  Similarity=0.356  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCC-----------hHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           50 ENREFVIVGGG-----------NAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        50 ~~~~vvIIGgG-----------~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ..++|+|||+|           +++..|++.|++.|+   ++.++..++..
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~---~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY---ETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC---EEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC---eEEEEecChhh
Confidence            45789999998           689999999999999   99999988764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.17  E-value=0.17  Score=40.88  Aligned_cols=32  Identities=25%  Similarity=0.432  Sum_probs=26.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHh----CCCcEEEEecCC
Q 021871          209 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPEN  240 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~----~~~~v~~~~~~~  240 (306)
                      .|+|||+|..|+-.|..+++    .+.+|.++++.+
T Consensus        23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            58999999999887777754    688999998653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.15  E-value=0.014  Score=42.39  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ++|.|||.|.-|.+.|+.|.+.|+ ..+|+.+|++.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECCh
Confidence            479999999999999999999986 45677777653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.013  Score=44.04  Aligned_cols=37  Identities=14%  Similarity=0.284  Sum_probs=32.1

Q ss_pred             CCCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      |.+++|+|+|| |..|-.++.+|.++|+   +|+++.|+..
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~---~V~~~~R~~~   38 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDSS   38 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCGG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEEcChh
Confidence            34678999996 9999999999999998   9999987643

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.019  Score=39.17  Aligned_cols=38  Identities=21%  Similarity=0.425  Sum_probs=32.9

Q ss_pred             CCCCcEEEEcCCh-----------HHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           49 NENREFVIVGGGN-----------AAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        49 ~~~~~vvIIGgG~-----------aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      ...++|+|||+|+           ++..+++.|++.|+   ++.++..++..
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~---~~iliN~NP~T   53 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY---RVINVNSNPAT   53 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC---EEEEECSCTTC
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC---eEEEecCchHh
Confidence            4568999999985           89999999999999   89999987664

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.90  E-value=0.018  Score=41.78  Aligned_cols=35  Identities=23%  Similarity=0.460  Sum_probs=30.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      +.++|+|+|+|-++-++++.|.+.|..  +|+|+.|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~--~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFE--KLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCC--CEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCC--EEEEeccc
Confidence            457899999999999999999999975  78888765

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.016  Score=47.05  Aligned_cols=35  Identities=31%  Similarity=0.413  Sum_probs=32.1

Q ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc
Q 021871          210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  244 (306)
Q Consensus       210 v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~  244 (306)
                      |+|||+|.+|+-.|..|++.|.+|+++++++++.+
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GG   36 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG   36 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBT
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc
Confidence            79999999999999999999999999999877643

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.80  E-value=0.019  Score=40.34  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=29.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|.|||+|..|.++|+.|...+. -.++.++|..+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGF-AREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CCEEEEEeccc
Confidence            79999999999999999999886 33799988653

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.71  E-value=0.02  Score=40.27  Aligned_cols=35  Identities=17%  Similarity=0.154  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      .+|.|||+|..|.++|+.|..++. -.++.++|..+
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLD-VDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSC-CSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCc-CceEEEEeccc
Confidence            379999999999999999998886 23799998653

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.016  Score=35.99  Aligned_cols=35  Identities=14%  Similarity=0.227  Sum_probs=31.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (306)
                      +.|-|+|||.-|--.+....+.|+   ++.+++++...
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~---~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI---AVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE---EEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC---EEEEEcCCCCC
Confidence            579999999999999999999999   99999987653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.031  Score=36.01  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=32.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      ++++|+|+|.|.+|..+|..|.+.+.+|++......
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            478999999999999999999999999999987654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.028  Score=40.84  Aligned_cols=35  Identities=11%  Similarity=0.247  Sum_probs=31.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.++|+|+|+|=++-++++.|.+.|.   +|+|+.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~---~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDC---AVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccce---EEEeccchH
Confidence            45799999999999999999999986   899988753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.43  E-value=0.022  Score=41.06  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ++|-|||-|.-|...|++|.+.|+   +|.++|++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~---~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY---LLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC---EEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC---eEEEEECch
Confidence            579999999999999999999999   999998753

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.35  E-value=0.022  Score=40.24  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=28.8

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           53 EFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        53 ~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|.|||| |..|.++|+.|...+. -.++.++|..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCc-ccccccccchh
Confidence            6999996 9999999999999986 23789988653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.34  E-value=0.02  Score=42.23  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=29.5

Q ss_pred             cEEEE-cCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           53 EFVIV-GGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        53 ~vvII-GgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +|+|| |+|--|.+.|..|++.|+   +|++.++++.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~---~V~l~~R~~e   35 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH---EIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            68999 669999999999999999   9999998753

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.34  E-value=0.022  Score=40.19  Aligned_cols=33  Identities=12%  Similarity=0.208  Sum_probs=28.2

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           53 EFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        53 ~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      +|+|||| |..|.++|+.|...++ -.++.++|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCc-cceEEEEecc
Confidence            7999996 9999999999999887 2378888864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.027  Score=40.87  Aligned_cols=35  Identities=14%  Similarity=0.196  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..|+|+|+|+.|+.++..+...|..  +|+++|+.+.
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~--~Vi~~d~~~~   62 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAA--QVVVTDLSAT   62 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCc--eEEeccCCHH
Confidence            4799999999999999999999864  7888887643

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.11  Score=37.48  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=30.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      .+++|+|+|+|-.+.-++..|.+.+.+++++.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            5789999999999999999999999888988775

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.025  Score=43.86  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=32.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|+|||+|-.|-.+|..|++.|..  +++++|.+..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCccc
Confidence            46999999999999999999999986  9999997754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.16  E-value=0.026  Score=44.12  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=30.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~  240 (306)
                      .|+|||+|..|+-.|.+|++.|.+|+++++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999999999999864

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=94.07  E-value=0.037  Score=39.65  Aligned_cols=36  Identities=17%  Similarity=0.477  Sum_probs=31.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      .+.++++|||+|-.|-.+|.+|...|..  +++|+-|.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~--~i~v~nRt   57 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVR--AVLVANRT   57 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCS--EEEEECSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCc--EEEEEcCc
Confidence            4567999999999999999999999874  68887765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.02  E-value=0.024  Score=41.06  Aligned_cols=35  Identities=9%  Similarity=0.140  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...|+|+|+|+.|+.++..+...|.   +|+++|+++.
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga---~vi~v~~~~~   61 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGA---FVVCTARSPR   61 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCEEEEEcccccchhhHhhHhhhcc---cccccchHHH
Confidence            3479999999999999999998986   8999997643

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.037  Score=41.06  Aligned_cols=38  Identities=26%  Similarity=0.458  Sum_probs=33.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  244 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~  244 (306)
                      -++|+|||+|..|..+|..++..|.+|+++.+.+....
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            47899999999999999999999999999998765443

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.96  E-value=0.022  Score=42.38  Aligned_cols=32  Identities=13%  Similarity=0.075  Sum_probs=27.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +|.|||.|..||.+|..++ +|+   +|+.+|.++.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~---~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQN---EVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTS---EEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCC---cEEEEECCHH
Confidence            6999999999999998775 588   9999997754

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.93  E-value=0.066  Score=37.57  Aligned_cols=38  Identities=16%  Similarity=0.217  Sum_probs=31.7

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.+|.|||| |.+|....+-|.+++++..++..+..+..
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~   40 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES   40 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeeccc
Confidence            468999999 99999999999988888778887765443

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.86  E-value=0.036  Score=43.96  Aligned_cols=36  Identities=17%  Similarity=0.291  Sum_probs=31.3

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++.+|+|+|| |..|..++.+|.++|+   +|+++.+...
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~---~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH---PTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCCc
Confidence            3567999997 9999999999999998   8999887543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.76  E-value=0.039  Score=39.72  Aligned_cols=35  Identities=14%  Similarity=0.158  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...|+|+|+|+.|+.++.-+...|.   +|.++++.+.
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~---~Vi~~~~~~~   62 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGL---HVAAIDIDDA   62 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCC---ccceecchhh
Confidence            3579999999999999999988986   8999987643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.73  E-value=0.045  Score=39.50  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...|+|+|+|..|+.++..+...|.   +|++++.++.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~---~vi~~~~~~~   62 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGA---ETYVISRSSR   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC---EEEEEESSST
T ss_pred             CCEEEEECCCCcchhHHHHhhhccc---cccccccchh
Confidence            4579999999999999999888987   8988887644

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=93.71  E-value=0.048  Score=39.97  Aligned_cols=37  Identities=14%  Similarity=0.300  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..++|+|+|+|-+|-++++.|.+.|..  +++++.+...
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~--~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLK--EIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCc--eEeeeccchH
Confidence            457999999999999999999999875  7888887643

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.48  E-value=0.041  Score=39.47  Aligned_cols=32  Identities=13%  Similarity=0.295  Sum_probs=29.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|-|||-|.-|...|.+|.+.|+   +|+++|+.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~---~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY---SLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC---eEEEEeCCc
Confidence            58999999999999999999999   899998753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.41  E-value=0.033  Score=40.85  Aligned_cols=35  Identities=14%  Similarity=0.246  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..|+|+|+|+.|+.++..+...|..  +|+++|+++.
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~~   64 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSPN   64 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCHH
T ss_pred             CEEEEECCCccchhheecccccccc--cccccccccc
Confidence            5799999999999999999999863  7899987644

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.40  E-value=0.041  Score=43.75  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=29.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  240 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~  240 (306)
                      +|+|||+|..|+-.|..|++.+. +|+++++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            69999999999999999999985 699998874

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.38  E-value=0.05  Score=42.77  Aligned_cols=36  Identities=14%  Similarity=0.327  Sum_probs=32.1

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+++|+|+|| |..|-.++..|.+.|+   +|+++++...
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~---~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH---PTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEECCCc
Confidence            3578999998 9999999999999998   9999998654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.34  E-value=0.053  Score=41.09  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=31.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      .|+|||+|+.|+..|..+++.+.+|.++.+.+.+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            4899999999999999999999999999987664

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.33  E-value=0.047  Score=39.72  Aligned_cols=36  Identities=17%  Similarity=0.173  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...|+|+|+|+.|+.++..++..|..  +|+++|+++.
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~--~Vi~~d~~~~   63 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAG--RIIGVGSRPI   63 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCS--CEEEECCCHH
T ss_pred             CCEEEEEcCCcchhhhhhhhhccccc--ccccccchhh
Confidence            35799999999999999999988864  6888887643

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.31  E-value=0.054  Score=39.42  Aligned_cols=34  Identities=12%  Similarity=0.314  Sum_probs=31.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+|-|||-|.-|..+|++|.+.|+   +|.++++...
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~---~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF---VVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC---eEEEEcCCHH
Confidence            479999999999999999999999   9999998653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.29  E-value=0.2  Score=34.26  Aligned_cols=31  Identities=19%  Similarity=0.276  Sum_probs=28.8

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      +|+|+|.|..|..++..|.+.+.+|+++...
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d   32 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   32 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence            5899999999999999999999999999874

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.27  E-value=0.054  Score=41.11  Aligned_cols=34  Identities=38%  Similarity=0.396  Sum_probs=31.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      .++|||+|+.|+..|..+++.+.+|.++.+.+.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~   41 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            4899999999999999999999999999987654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.27  E-value=0.19  Score=36.22  Aligned_cols=34  Identities=12%  Similarity=0.135  Sum_probs=30.5

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      .+++++|+|+|-.+.-++..|.+.+.+++++.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            5789999999999999999998888899999885

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=93.13  E-value=0.035  Score=45.03  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=30.5

Q ss_pred             eEEEEcCCHHHHHHHHHHH-----hCCCcEEEEecCCccc
Q 021871          209 KVVVVGGGYIGMEVAAAAV-----GWKLDTTIIFPENHLL  243 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~-----~~~~~v~~~~~~~~~~  243 (306)
                      .|+|||+|++|+-+|..|+     +.|.+|+++++.+.+.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            5899999999999999996     4688999999987654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.12  E-value=0.056  Score=38.28  Aligned_cols=32  Identities=16%  Similarity=0.188  Sum_probs=28.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|.|||.|.-|...|+.|++.|+   +|+++++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~---~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV---EVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC---EEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC---eEEEEcCch
Confidence            68999999999999999999998   888877543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.09  E-value=0.066  Score=38.92  Aligned_cols=35  Identities=14%  Similarity=0.112  Sum_probs=29.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ...|+|+|+|+.|+.++..+...|..  .|++.|..+
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~--~Vi~~d~~~   63 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGAS--RIIAIDING   63 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCc--eeeeeccch
Confidence            35799999999999999999999963  677777653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.09  E-value=0.065  Score=34.69  Aligned_cols=36  Identities=14%  Similarity=0.207  Sum_probs=30.8

Q ss_pred             CCCCCcEEEEcCChHHHHH-HHHHHHcCCCCCcEEEeccC
Q 021871           48 ANENREFVIVGGGNAAGYA-ARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        48 ~~~~~~vvIIGgG~aGl~a-A~~L~~~g~~~~~V~vie~~   86 (306)
                      +.+.+++-+||-|=+|+++ |+.|.++|+   +|+--|..
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~---~VsGSD~~   41 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY---QISGSDIA   41 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC---EEEEEESC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC---EEEEEeCC
Confidence            4456899999999999988 999999999   88887754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.07  E-value=0.052  Score=39.30  Aligned_cols=35  Identities=14%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      .++|+|+|+|..|..+|..|.+.+.+|+++.|...
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            57899999999999999999999999999998743

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.05  E-value=0.053  Score=39.54  Aligned_cols=35  Identities=14%  Similarity=0.102  Sum_probs=30.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..|+|+|+|..|+.++..++..|..  +|.++|.++.
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~--~Vi~vd~~~~   65 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGAS--RIIGIDLNKD   65 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCc--eEEEecCcHH
Confidence            4699999999999999999999853  7999997644

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.98  E-value=0.073  Score=40.11  Aligned_cols=38  Identities=18%  Similarity=0.285  Sum_probs=32.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ....+++|.|+|.+|+.+|..|.+.+.+  ++.++|+.-.
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~--~i~~~D~~GL   61 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRKGI   61 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTEE
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhccc--ceEeecceeE
Confidence            3457899999999999999999999876  8999998633

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.97  E-value=0.073  Score=40.15  Aligned_cols=36  Identities=28%  Similarity=0.465  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHH--------------------HcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFV--------------------EHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~--------------------~~g~~~~~V~vie~~~~   88 (306)
                      .++|+|||+|-.++=+|+.|.                    +.+.+  +|+++-++..
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~--~V~iv~RRg~   94 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQ--EVVIVGRRGP   94 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCC--EEEEECSSCG
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCc--eEEEEEECCh
Confidence            579999999999999999887                    44544  7888877644

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=92.93  E-value=0.052  Score=39.58  Aligned_cols=32  Identities=22%  Similarity=-0.009  Sum_probs=30.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      ++++|||+|..|.-+|..|++.|.+|+++.|.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence            68999999999999999999999999999875

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.92  E-value=0.066  Score=37.46  Aligned_cols=32  Identities=16%  Similarity=0.291  Sum_probs=27.3

Q ss_pred             cEEEEc-CChHHHHHHHHHHHcCCCCCcEEEecc
Q 021871           53 EFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSK   85 (306)
Q Consensus        53 ~vvIIG-gG~aGl~aA~~L~~~g~~~~~V~vie~   85 (306)
                      +|.||| +|..|.++|+.|..+++ -.++.++|-
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEec
Confidence            799999 69999999999999987 336888874

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=92.87  E-value=0.049  Score=40.14  Aligned_cols=37  Identities=19%  Similarity=0.215  Sum_probs=33.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~  243 (306)
                      -++|+|||+|..|..+|..++..|.+|+++.+.+...
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l   40 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGI   40 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence            4789999999999999999999999999999875543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.86  E-value=0.056  Score=42.34  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=30.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      .|+|||+|.+|+-.|..|++.+.+|+++.+.+.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~   37 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999999999999998643

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.80  E-value=0.067  Score=38.91  Aligned_cols=32  Identities=19%  Similarity=0.356  Sum_probs=29.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|-|||-|.-|...|++|.+.|+   +|.++|+..
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~---~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGF---KVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC---CEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCC---eEEEEECCH
Confidence            69999999999999999999999   899998754

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.077  Score=37.88  Aligned_cols=33  Identities=18%  Similarity=0.135  Sum_probs=30.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      +|+|+|.|..|.-+|..|++.+.+|+++.|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            689999999999999999999999999988765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.56  E-value=0.057  Score=40.07  Aligned_cols=35  Identities=17%  Similarity=0.118  Sum_probs=28.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ..+|+|+|+|+.|+.++..+...|-.  +|.++|..+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~--~Vi~~d~~~   60 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAA--VVIVGDLNP   60 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhccc--ceeeecccc
Confidence            45899999999999999999888753  788888653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.42  E-value=0.077  Score=38.47  Aligned_cols=34  Identities=21%  Similarity=0.124  Sum_probs=27.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ..+|+|+|+|..|+.++..+...|..  .|.+.+++
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~--~v~~~~~~   62 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGAS--IIIAVDIV   62 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCS--EEEEEESC
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccc--eeeeeccH
Confidence            45799999999999999999999873  55666654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=92.31  E-value=0.077  Score=43.32  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=30.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      .|+|||+|..|.-+|..|++.+.+|.+++++..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            489999999999999999999999999999754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.19  E-value=0.093  Score=38.05  Aligned_cols=35  Identities=17%  Similarity=0.129  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ...|+|+|+|+.|+.++..+...|..  +|.++|.++
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~--~Vi~~d~~~   62 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGAS--RIIGVGTHK   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCc--eeeccCChH
Confidence            34799999999999999999999864  688888653

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.13  E-value=0.079  Score=40.25  Aligned_cols=36  Identities=28%  Similarity=0.319  Sum_probs=31.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc--------------------CCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH--------------------GMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~--------------------g~~~~~V~vie~~~~   88 (306)
                      .++|+|||+|-.+|=||+.|.+.                    |.+  +|+++.++..
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~--~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVK--TVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCC--EEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCC--eEEEEEEcCh
Confidence            57999999999999999999983                    544  8999998764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.08  Score=37.79  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=32.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...+.++|||-|+.|-.+|..|+..|-   +|++.|.++.
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~---~V~v~e~dp~   58 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGA---RVIITEIDPI   58 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCC---eeEeeecccc
Confidence            346799999999999999999999998   9999997654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.09  E-value=0.26  Score=34.57  Aligned_cols=53  Identities=9%  Similarity=0.086  Sum_probs=38.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcC
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  269 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~  269 (306)
                      .+++|+|.|..|..++..|.+.+.+++++...+.         ......+.+...|+.++.+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~---------~~~~~~~~~~~~~~~vi~G   56 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPE---------DDIKQLEQRLGDNADVIPG   56 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH---------HHHHHHHHHHCTTCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccch---------hHHHHHHHhhcCCcEEEEc
Confidence            4799999999999999999999999999876432         2222333444567776655

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.09  E-value=0.099  Score=37.55  Aligned_cols=33  Identities=12%  Similarity=0.197  Sum_probs=28.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ...|+|+|+|..|+.++..+...|.   ++++++..
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga---~~i~~~~~   63 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGA---HVVAFTTS   63 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCEEEEeccchHHHHHHHHhhcccc---cchhhccc
Confidence            4589999999999999999988887   77777754

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.97  E-value=0.1  Score=42.51  Aligned_cols=37  Identities=24%  Similarity=0.251  Sum_probs=31.4

Q ss_pred             CCCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+.++|+|.|| |+.|-.++.+|.++|+   +|+++++...
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~---~V~~~d~~~~   50 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGH---YVIASDWKKN   50 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEeCCCc
Confidence            34567999985 9999999999999998   9999986544

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.12  Score=36.20  Aligned_cols=33  Identities=12%  Similarity=0.185  Sum_probs=25.8

Q ss_pred             cEEEEc-CChHHHHHHHHHHHc-CCCCCcEEEeccC
Q 021871           53 EFVIVG-GGNAAGYAARTFVEH-GMADGRLCIVSKE   86 (306)
Q Consensus        53 ~vvIIG-gG~aGl~aA~~L~~~-g~~~~~V~vie~~   86 (306)
                      +|.||| +|..|.++|+.|... +. -.++.++|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~-~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPS-GSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCT-TCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCC-CcEEEEeccc
Confidence            799999 599999999998654 43 2378888853

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=91.90  E-value=0.084  Score=43.17  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~  240 (306)
                      .++|||+|..|+-+|..|++.+.+|.+++++.
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            47999999999999999999999999999874

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.80  E-value=0.089  Score=41.78  Aligned_cols=33  Identities=33%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      .|+|||+|..|+-.|..+++.+.+|.++++.+.
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~   50 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPV   50 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            599999999999999999999999999998754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=91.68  E-value=0.08  Score=38.32  Aligned_cols=34  Identities=15%  Similarity=0.334  Sum_probs=29.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ..++|+|+|+|=++-++++.|.+.+.   +|+|+.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~---~i~I~nR~   50 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQ---NIVLANRT   50 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTC---EEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCc---eeeeccch
Confidence            45789999999999999999998664   89998876

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=91.54  E-value=0.095  Score=42.65  Aligned_cols=33  Identities=30%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      .++|||+|..|+-+|..|++.+.+|.++++++.
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~   38 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI   38 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCC
Confidence            489999999999999999999999999998754

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.27  E-value=0.14  Score=41.36  Aligned_cols=36  Identities=14%  Similarity=0.222  Sum_probs=31.5

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +++.|+|+|| |..|-+++..|.++|+   +|.++.++..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~---~V~~l~R~~~   38 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH---HVRAQVHSLK   38 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC---CEEEEESCSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC---eEEEEECCcc
Confidence            4689999997 9999999999999998   8998877543

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.20  E-value=0.11  Score=39.10  Aligned_cols=36  Identities=8%  Similarity=0.235  Sum_probs=30.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.++|+|||+|.+|+-+|..|++.+.   +++++-+...
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~---~~~~~~~~~~   66 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAA---ELFVFQRTPH   66 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBS---EEEEEESSCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhc---cccccccccc
Confidence            46899999999999999999999986   6766665544

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.98  E-value=0.15  Score=43.19  Aligned_cols=56  Identities=18%  Similarity=0.148  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHHcCCEEEcCceEEEEEeC-CCCcEEEEEeCCCCEEecCEEEEec
Q 021871          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAAVKLEDGSTIDADTVILLP  303 (306)
Q Consensus       248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~v~~v~~~~G~~i~~d~vv~a~  303 (306)
                      ..++...+-|...-.|..+++++.|++|..+ +++++.+|.+.+|+++.++.||..+
T Consensus       375 ~gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~p  431 (491)
T d1vg0a1         375 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED  431 (491)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG
T ss_pred             cchHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECH
Confidence            4578888889999999999999999998753 5677878999999999999999865

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.94  E-value=0.15  Score=36.44  Aligned_cols=34  Identities=18%  Similarity=0.136  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ...|+|+|+|+.|+.++..+...|.   +|.+++.++
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~---~v~~~~~~~   61 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGL---NVVAVDIGD   61 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCEEEEeecccchhhhhHHHhcCCC---eEeccCCCH
Confidence            3579999999999999999998887   888888654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.93  E-value=0.16  Score=36.53  Aligned_cols=35  Identities=17%  Similarity=0.119  Sum_probs=28.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..|+|+|+|..|+.++..++..+-.  .|+++++.+.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~--~Vi~~~~~~~   64 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAK--RIIAVDLNPD   64 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCGG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhc--hheeecchHH
Confidence            4699999999999999999988753  6888876543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.90  E-value=0.12  Score=35.38  Aligned_cols=32  Identities=16%  Similarity=0.156  Sum_probs=29.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      |+++|+|.|..|..+|..|.+.+.+++++...
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d   32 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   32 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence            57899999999999999999999999999874

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=90.75  E-value=0.12  Score=36.69  Aligned_cols=37  Identities=22%  Similarity=0.271  Sum_probs=33.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ...+.++|+|=|+.|-.+|.+|+..|-   +|+|.|.++.
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~Ga---~V~V~E~DPi   57 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGLGA---RVYITEIDPI   57 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSCHH
T ss_pred             ecCCEEEEecccccchhHHHHHHhCCC---EEEEEecCch
Confidence            346899999999999999999999998   9999998765

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=90.74  E-value=0.13  Score=41.13  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=30.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      .|+|||+|..|+-.|..+++.+.+|.++++.+.
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~   57 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI   57 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            599999999999999999999999999998754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.24  E-value=0.095  Score=35.82  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=26.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++++|+|.|..|..++..|.  +.   .|.++|.++.
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~---~i~vi~~d~~   32 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GS---EVFVLAEDEN   32 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GG---GEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHc--CC---CCEEEEcchH
Confidence            47999999999999999994  44   6788886543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.21  E-value=0.16  Score=36.50  Aligned_cols=35  Identities=17%  Similarity=0.120  Sum_probs=28.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ...|+|+|+|+.|+.++..++..|..  .|++.++.+
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~--~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPA--TVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCC--EEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCc--ccccccchh
Confidence            35799999999999999999888853  677777654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.15  E-value=0.16  Score=31.22  Aligned_cols=35  Identities=20%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      ++|.|+|+|..|..++......|.+++++.+.+..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            57999999999999999999999999999887553

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.13  E-value=0.27  Score=32.54  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      ..+|.|+|+|..|..++....+.|.++.++.+.+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            45799999999999999999999999999998866

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.11  E-value=0.22  Score=36.51  Aligned_cols=38  Identities=11%  Similarity=0.224  Sum_probs=32.3

Q ss_pred             CCCCCcEEEEc-CChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           48 ANENREFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        48 ~~~~~~vvIIG-gG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.+.+.++|.| +|-.|..+|+.|+++|.   +|++++++..
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~---~V~~~~r~~~   58 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA---EVVLCGRKLD   58 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc---chhhcccchH
Confidence            34568899998 58999999999999998   9999988743

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.96  E-value=0.14  Score=42.91  Aligned_cols=36  Identities=8%  Similarity=0.323  Sum_probs=32.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|+|||+|-.|..+|+.|+..|..  +++|+|.+..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg--~i~lvD~D~V   72 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFR--QIHVIDMDTI   72 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCC--CEEEECCCBC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCCc
Confidence            46899999999999999999999986  8999998754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.88  E-value=0.14  Score=37.14  Aligned_cols=34  Identities=24%  Similarity=0.400  Sum_probs=28.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      -+.++|+|+|+|-++-++++.|.+.+    +|+|+.|.
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~~----~i~I~nR~   49 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKDN----NIIIANRT   49 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS----EEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHcccc----ceeeehhh
Confidence            34579999999999999999996554    78888775

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=89.87  E-value=0.19  Score=35.27  Aligned_cols=33  Identities=33%  Similarity=0.505  Sum_probs=28.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +|.+||+|.-|-+.|..|.+.|.  .+|.+.++++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~--~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGG--YRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCS--CEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC--CcEEEEeCCh
Confidence            68999999999999999998873  2888888753

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=89.71  E-value=0.2  Score=39.93  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      .|+|||+|..|+-.|..+++.+.+|.++++.+.
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~   53 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPF   53 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            399999999999999999999999999988754

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.47  E-value=0.093  Score=37.22  Aligned_cols=25  Identities=12%  Similarity=0.088  Sum_probs=22.3

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCC
Q 021871           51 NREFVIVGG-GNAAGYAARTFVEHGM   75 (306)
Q Consensus        51 ~~~vvIIGg-G~aGl~aA~~L~~~g~   75 (306)
                      +.+|.|||| |..|.++|+.|...++
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccc
Confidence            459999997 9999999999998765

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.34  E-value=0.061  Score=36.81  Aligned_cols=37  Identities=14%  Similarity=-0.014  Sum_probs=26.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY   88 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~~   88 (306)
                      ++++|+|+|||.+|-+.+.++.+. ++.  -+.++|.++.
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~--iv~fiDdd~~   39 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFE--LRGFFDVDPE   39 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEE--EEEEEESCTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcE--EEEEEeCchH
Confidence            356899999999999998876432 221  3567776544

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.22  E-value=0.22  Score=40.10  Aligned_cols=33  Identities=15%  Similarity=0.336  Sum_probs=29.4

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        51 ~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      .++|+|.|| |+.|-..+.+|.+.|+   +|+++|+-
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~---~V~~ld~~   35 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGY---LPVVIDNF   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC---CEEEEECS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcC---EEEEEECC
Confidence            468999976 9999999999999998   99999864

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.05  E-value=0.31  Score=35.00  Aligned_cols=35  Identities=17%  Similarity=0.084  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..|+|+|+|..|+.++..++..|-.  +|.+++.++.
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~--~Vi~~~~~~~   64 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAA--RIIGVDINKD   64 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCc--eEEeecCcHH
Confidence            4699999999999999999999853  7888776543

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.82  E-value=0.18  Score=40.04  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCccc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL  243 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~--~~~v~~~~~~~~~~  243 (306)
                      ...|+|||+|+.|+..|..|++.  +.+|+++.+++.+.
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~   88 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG   88 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence            45699999999999999999964  88999999987653

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.75  E-value=0.2  Score=35.24  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=27.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ++.|||.|--|.+.|..|.+.++   ++++.++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~---~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH---ELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC---EEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC---eEEEEcCh
Confidence            68999999999999999998887   88888765

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.63  E-value=0.13  Score=39.86  Aligned_cols=33  Identities=9%  Similarity=0.192  Sum_probs=29.5

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ++|+|.|| |+.|-..+.+|.++|+   +|+.+++.+
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~---~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV---EVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE---EEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC---EEEEeechh
Confidence            36999998 9999999999999998   899988764

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.56  E-value=0.26  Score=36.52  Aligned_cols=35  Identities=6%  Similarity=0.158  Sum_probs=27.9

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        51 ~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      +++|+|.|| |+.|-.++.+|.+.|+ ..+|+.+.++
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~-~~~v~~~~r~   37 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPT-LAKVIAPARK   37 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTT-CCEEECCBSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-eEEEEEEeCC
Confidence            479999999 9999999999999986 2345555443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=0.24  Score=39.27  Aligned_cols=32  Identities=19%  Similarity=0.435  Sum_probs=28.8

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEecc
Q 021871           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSK   85 (306)
Q Consensus        51 ~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~   85 (306)
                      +++|+|.|| |+.|-.++.+|.++|+   +|+.+++
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~---~V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGH---EVTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeC
Confidence            468999977 9999999999999998   9999985

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=88.13  E-value=0.41  Score=35.36  Aligned_cols=35  Identities=20%  Similarity=0.304  Sum_probs=31.2

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      -+.++|+|-|-|-.|..+|..|.+.|.   +|++.|.+
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga---kvvv~d~d   59 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA---QLLVADTD   59 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEecch
Confidence            356799999999999999999999998   89888864

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.99  E-value=0.084  Score=37.47  Aligned_cols=25  Identities=12%  Similarity=0.118  Sum_probs=21.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCC
Q 021871           51 NREFVIVGG-GNAAGYAARTFVEHGM   75 (306)
Q Consensus        51 ~~~vvIIGg-G~aGl~aA~~L~~~g~   75 (306)
                      +.+|.|||| |..|.++|+.|...+.
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~   28 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSV   28 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHh
Confidence            469999996 9999999999987654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=87.97  E-value=0.15  Score=37.47  Aligned_cols=32  Identities=22%  Similarity=0.242  Sum_probs=29.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      ++|+|+|+|..|..+|..|++.+.+|++..|.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            57999999999999999999998899998764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.78  E-value=0.41  Score=34.05  Aligned_cols=36  Identities=17%  Similarity=0.179  Sum_probs=29.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|+|+|+ |..|+.++..+...|..  +|+++++++.
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~--~V~~~~~~~~   64 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGA--TIIGVDVREE   64 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCC--EEEEEESSHH
T ss_pred             CCEEEEEeccccceeeeeecccccccc--cccccccchh
Confidence            357999994 99999999999988854  7888887643

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=87.71  E-value=0.27  Score=39.40  Aligned_cols=31  Identities=16%  Similarity=0.404  Sum_probs=27.8

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           53 EFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        53 ~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      +|+|+|| |+.|-.++.+|.++|+   +|+++++-
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~---~V~~~d~~   33 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGH---DVIILDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcC---EEEEEECC
Confidence            5899976 9999999999999998   99999853

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=87.49  E-value=0.3  Score=39.69  Aligned_cols=32  Identities=16%  Similarity=0.136  Sum_probs=29.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~  240 (306)
                      .++|||+|..|+-+|..|++.+.+|.++++++
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            47899999999999999999999999999883

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.42  E-value=0.24  Score=37.09  Aligned_cols=25  Identities=12%  Similarity=0.202  Sum_probs=23.0

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCC
Q 021871           51 NREFVIVGG-GNAAGYAARTFVEHGM   75 (306)
Q Consensus        51 ~~~vvIIGg-G~aGl~aA~~L~~~g~   75 (306)
                      +++|+|.|| |..|..++..|.++|+
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~   28 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSD   28 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTT
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC
Confidence            578999995 9999999999999997

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=87.27  E-value=0.38  Score=38.65  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=31.0

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIG-gG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .++|+|.| +|+.|..++..|.++|+   +|..+++...
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~---~V~~~~r~~~   43 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGA---TVKGYSLTAP   43 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCC
Confidence            47999998 58999999999999998   9999997644

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=87.17  E-value=0.44  Score=34.55  Aligned_cols=36  Identities=11%  Similarity=0.216  Sum_probs=31.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      ...+.|.|||.|..|-..|..|...|.   +|..+++..
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~---~v~~~d~~~   75 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGA---QVRGFSRTP   75 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTC---EEEEECSSC
T ss_pred             ccCceEEEeccccccccceeeeecccc---ccccccccc
Confidence            345789999999999999999999998   999998753

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=86.64  E-value=0.88  Score=35.32  Aligned_cols=58  Identities=24%  Similarity=0.484  Sum_probs=41.4

Q ss_pred             CCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcC
Q 021871          207 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  269 (306)
Q Consensus       207 ~~~v~viG~-g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~  269 (306)
                      -.+|+|+|+ |.+|..++..|.+.|.+|+.+.|.+....    .. .......+...+++++..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~----~~-~~~~~~~~~~~~v~~v~~   61 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSN----ID-KVQMLLYFKQLGAKLIEA   61 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSC----HH-HHHHHHHHHTTTCEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccc----hh-HHHHHhhhccCCcEEEEe
Confidence            357999996 99999999999999999999988754322    11 122334456667777653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.56  E-value=1  Score=32.20  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=28.8

Q ss_pred             eEEEE-cCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871          209 KVVVV-GGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (306)
Q Consensus       209 ~v~vi-G~g~~a~e~a~~l~~~~~~v~~~~~~~  240 (306)
                      +|+|+ |.|..|..+|..|++.|.+|.+..|.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899 679999999999999999999999864

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=86.37  E-value=0.38  Score=34.39  Aligned_cols=33  Identities=15%  Similarity=0.068  Sum_probs=27.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ..|+|+|+|..|+.++..++..|..  .|.+.+.+
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~--~vi~~~~~   62 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGAS--RIIGVDIN   62 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSC
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcC--ceEEEccc
Confidence            4689999999999999999999863  56666654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.20  E-value=0.069  Score=40.57  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=21.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLD  232 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~  232 (306)
                      +|+|||+|..|+-.|..|++.+.+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCC
Confidence            689999999999999999988754

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.03  E-value=0.34  Score=35.05  Aligned_cols=31  Identities=23%  Similarity=0.276  Sum_probs=28.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      +|.|+|+|..|.-+|..|++.+.+|++..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            5899999999999999999999999998774

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.98  E-value=0.29  Score=42.13  Aligned_cols=36  Identities=8%  Similarity=0.217  Sum_probs=32.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ..+|+|||+|..|..+|+.|...|..  +++|+|.+..
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg--~itivD~d~v   60 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIG--SFTIIDGNQV   60 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCS--EEEEECCSBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCC--EEEEEcCCcC
Confidence            46999999999999999999999985  8999998654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.96  E-value=0.94  Score=32.86  Aligned_cols=35  Identities=31%  Similarity=0.326  Sum_probs=31.7

Q ss_pred             cCCeEEEEc-CCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871          206 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  240 (306)
Q Consensus       206 ~~~~v~viG-~g~~a~e~a~~l~~~~~~v~~~~~~~  240 (306)
                      .+|+++|.| +|-+|..+|..+++.|.+|+++.|..
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            588999999 68999999999999999999999863

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=85.87  E-value=0.26  Score=34.78  Aligned_cols=35  Identities=11%  Similarity=0.246  Sum_probs=27.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           52 REFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        52 ~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ++|+|||| |.+|....+-|.++.++..++..+..+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~   37 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA   37 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECG
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccc
Confidence            68999999 999999999998886654566666543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=85.76  E-value=0.29  Score=35.15  Aligned_cols=36  Identities=14%  Similarity=0.284  Sum_probs=24.2

Q ss_pred             CcEEEEcCChHHHHHHHH--HHHc-CCCCCcEEEeccCC
Q 021871           52 REFVIVGGGNAAGYAART--FVEH-GMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIGgG~aGl~aA~~--L~~~-g~~~~~V~vie~~~   87 (306)
                      .+++|||||..|.+.+..  |.+. .....+++++|.++
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            589999999999775542  3322 22223889988763

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.67  E-value=0.47  Score=35.70  Aligned_cols=39  Identities=15%  Similarity=0.445  Sum_probs=32.2

Q ss_pred             CCCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           49 NENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        49 ~~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      |++++|+|.|| |..|-..+.+|.+.|. -.+|+++.+++.
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~-~~~v~~~~R~~~   51 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGL-FSKVTLIGRRKL   51 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTC-CSEEEEEESSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC-CCEEEEEecChh
Confidence            45678999987 9999999999999984 337999988653

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=85.53  E-value=0.47  Score=38.06  Aligned_cols=35  Identities=11%  Similarity=0.234  Sum_probs=28.3

Q ss_pred             CCCcEEEEc-CChHHHHHHHHHHHcCCCCCcEEEecc
Q 021871           50 ENREFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSK   85 (306)
Q Consensus        50 ~~~~vvIIG-gG~aGl~aA~~L~~~g~~~~~V~vie~   85 (306)
                      ++++|+|.| .|+.|-.++.+|.+.|+ +..|+++|+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~-~v~v~~~d~   36 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHP-DVHVTVLDK   36 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCT-TCEEEEEEC
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCC-CeEEEEEeC
Confidence            357899998 59999999999999996 445666664

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=85.42  E-value=1.9  Score=30.52  Aligned_cols=35  Identities=37%  Similarity=0.517  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      +-+|+|+|+|..|.+.+......+.+|++++.+..
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~   66 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE   66 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence            67899999999999999999999999999987644

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.94  E-value=0.53  Score=37.13  Aligned_cols=34  Identities=24%  Similarity=0.407  Sum_probs=29.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++|+|.|| |+.|-.++.+|.++|+   +|..+++...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~---~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY---RVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCCC
Confidence            47899987 9999999999999998   9999987643

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=84.57  E-value=0.64  Score=34.18  Aligned_cols=33  Identities=15%  Similarity=0.269  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      .+.|.|||.|-.|-.+|..|...|.   +|..+++.
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~---~v~~~d~~   77 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGA---KVIAYDPY   77 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred             ceeeeeeecccccccccccccccce---eeeccCCc
Confidence            4789999999999999999999998   99999875

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=83.65  E-value=0.57  Score=32.34  Aligned_cols=41  Identities=17%  Similarity=0.033  Sum_probs=33.4

Q ss_pred             HHhhcCeEEEeCC--cEEEEeCCCCEEEcCCCcEEecCcEEEe
Q 021871          129 WYKEKGIEMIYQD--PVTSIDIEKQTLITNSGKLLKYGSLIVA  169 (306)
Q Consensus       129 ~~~~~~v~~~~~~--~v~~v~~~~~~v~~~~g~~~~~~~lila  169 (306)
                      .+++.+++++.+.  .+.++|.....+.+.+|+.+.||.+.+-
T Consensus        97 ~~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vv  139 (141)
T d1fcda2          97 GTENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLI  139 (141)
T ss_dssp             TTSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEEC
T ss_pred             HHHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeC
Confidence            3556788888654  5888998899999999999999998763

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=83.61  E-value=0.65  Score=38.07  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=28.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCC
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPEN  240 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~  240 (306)
                      .++|||+|..|+-+|..|++.+ .+|.++++++
T Consensus        26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            4799999999999999999987 5899999885

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.44  E-value=2.5  Score=35.44  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=35.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (306)
                      ..+||||+|-|..=.-+|..|++.|+   +|+-+|+++..+
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~Gk---kVLHiD~N~yYG   42 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQ---RVLHVDSRSYYG   42 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCC---EEEEecCCCcCC
Confidence            46899999999999999999999998   999999998865

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.41  E-value=1.4  Score=33.70  Aligned_cols=53  Identities=13%  Similarity=0.102  Sum_probs=38.6

Q ss_pred             cCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEE
Q 021871          206 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (306)
Q Consensus       206 ~~~~v~viG~-g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  266 (306)
                      .+|.++|.|+ +-+|.++|..|++.|.+|.+..+.        +.+..+.+.+.+++.|.++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~--------~~~~~~~~~~~~~~~g~~~   58 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS--------SSKAAEEVVAELKKLGAQG   58 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC--------ChHHHHHHHHHHHHcCCCc
Confidence            4677777775 557999999999999999987765        4444555666666666543

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.41  E-value=0.7  Score=36.66  Aligned_cols=34  Identities=15%  Similarity=0.272  Sum_probs=29.2

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +.++|.|| |+.|-.++.+|.++|+   +|..+++...
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~---~V~~~~r~~~   36 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY---EVHGLIRRSS   36 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC---EEEEEECCCc
Confidence            56777776 9999999999999999   9999998643

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=83.35  E-value=1.8  Score=33.07  Aligned_cols=58  Identities=22%  Similarity=0.432  Sum_probs=41.8

Q ss_pred             CCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEc
Q 021871          207 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  268 (306)
Q Consensus       207 ~~~v~viG~-g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~  268 (306)
                      -++|+|+|+ |.+|-.++..|.+.|.+|+.+.|.+....   .+... .....+...+++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~---~~~~~-~~~~~~~~~~~~~~~   61 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKA-QLLESFKASGANIVH   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHH-HHHHHHHTTTCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc---chhHH-HHHHhhccCCcEEEE
Confidence            368999996 99999999999999999999999865443   22222 223445556776654

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.20  E-value=0.42  Score=33.93  Aligned_cols=34  Identities=9%  Similarity=0.062  Sum_probs=23.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC---CCCcEEEeccC
Q 021871           53 EFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKE   86 (306)
Q Consensus        53 ~vvIIGgG~aGl~aA~~L~~~g~---~~~~V~vie~~   86 (306)
                      +|+|||||..|...+....-++.   .-.++.++|.+
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did   38 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDID   38 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecC
Confidence            69999999888777765433222   12378888865

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=83.12  E-value=0.73  Score=35.04  Aligned_cols=33  Identities=6%  Similarity=0.193  Sum_probs=25.6

Q ss_pred             cEEEE-cC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           53 EFVIV-GG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        53 ~vvII-Gg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      +|+|| || +-.|.++|+.|++.|.   +|.+.++++.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga---~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGH---QIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECChH
Confidence            45444 65 4569999999999998   9999987643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=83.06  E-value=0.9  Score=31.49  Aligned_cols=35  Identities=26%  Similarity=0.244  Sum_probs=31.8

Q ss_pred             CCeEEEEc-CCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          207 AKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       207 ~~~v~viG-~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      -++|+||| .|..|.-+|..|.+.+.+|+++.+...
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            47899999 699999999999999999999988755

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=83.02  E-value=0.4  Score=37.62  Aligned_cols=39  Identities=23%  Similarity=0.306  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc----CCC----CCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH----GMA----DGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~----g~~----~~~V~vie~~~~~   89 (306)
                      ..++||.|+|.+|+.+|..|...    |..    ..+|.++|+....
T Consensus        25 d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv   71 (298)
T d1gq2a1          25 DHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLI   71 (298)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEEC
T ss_pred             HcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcc
Confidence            46899999999999999998744    321    1279999987544

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.85  E-value=0.6  Score=38.11  Aligned_cols=30  Identities=23%  Similarity=0.516  Sum_probs=27.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEec
Q 021871           52 REFVIVGG-GNAAGYAARTFVEHGMADGRLCIVS   84 (306)
Q Consensus        52 ~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie   84 (306)
                      ++|+|.|| |+.|-.++.+|.+.|+   +|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~---~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY---EVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC---EEEEEe
Confidence            57999976 9999999999999998   999997

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.45  E-value=2.3  Score=32.12  Aligned_cols=51  Identities=16%  Similarity=0.048  Sum_probs=36.3

Q ss_pred             cCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCE
Q 021871          206 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  265 (306)
Q Consensus       206 ~~~~v~viG~-g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  265 (306)
                      .++.++|.|+ +-+|.++|..+++.|.+|.+..|..         +-.+.+.+.++..|.+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~---------~~l~~~~~~~~~~~~~   57 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK---------HGLEETAAKCKGLGAK   57 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCc
Confidence            4677777776 4479999999999999999998852         2233444555655544

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=82.35  E-value=2.7  Score=31.97  Aligned_cols=52  Identities=15%  Similarity=0.281  Sum_probs=38.3

Q ss_pred             cCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEE
Q 021871          206 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (306)
Q Consensus       206 ~~~~v~viG~-g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  266 (306)
                      ++|.++|.|+ +-.|.++|..|++.|.+|.+..|.+         .-.+...+.+++.+.++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~---------~~l~~~~~~~~~~~~~~   57 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE---------KELDECLEIWREKGLNV   57 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCCc
Confidence            5788999985 6679999999999999999999853         22233445566665544

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=82.29  E-value=0.96  Score=33.14  Aligned_cols=34  Identities=12%  Similarity=0.151  Sum_probs=30.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ..+.|.|||-|..|-.+|..|...|.   +|..+++.
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~---~V~~~d~~   75 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA---KVITYDIF   75 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc---cccccCcc
Confidence            35789999999999999999999998   89998864

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=82.24  E-value=0.79  Score=32.30  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=29.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  239 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~  239 (306)
                      ..++++|||.|..|..++..|...+. ++++..|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            57899999999999999999999886 58888775

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.15  E-value=2.5  Score=32.27  Aligned_cols=54  Identities=17%  Similarity=0.163  Sum_probs=40.0

Q ss_pred             cCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEE
Q 021871          206 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  267 (306)
Q Consensus       206 ~~~~v~viG~-g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~  267 (306)
                      ++|.++|.|+ +-+|..+|..|++.|.+|.+..|.        ..+..+.+.+.+++.|.+++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~--------~~~~~~~~~~~~~~~g~~~~   60 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRS--------KEDEANSVLEEIKKVGGEAI   60 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC--------cHHHHHHHHHHHHhcCCcEE
Confidence            4677777764 667999999999999999999886        33445556666777776544

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.14  E-value=1.7  Score=30.97  Aligned_cols=33  Identities=24%  Similarity=0.205  Sum_probs=28.5

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      ++++++|+|+|-++.-++..|.+.+ +++++.|.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            5789999999999998888887766 88888875

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=81.95  E-value=1.2  Score=32.04  Aligned_cols=35  Identities=20%  Similarity=0.169  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      +-+|+|+|+|..|.+.+......|.+|++++....
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            67899999999999999999999999999987654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=81.93  E-value=0.79  Score=32.54  Aligned_cols=34  Identities=29%  Similarity=0.270  Sum_probs=29.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecC
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  239 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~  239 (306)
                      ..++|+|+|+|-.|.-++..|.+.+. +++++.|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            46789999999999999999999984 78888775

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.74  E-value=2  Score=32.91  Aligned_cols=53  Identities=21%  Similarity=0.247  Sum_probs=39.2

Q ss_pred             cCCeEEEEc-CCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEE
Q 021871          206 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (306)
Q Consensus       206 ~~~~v~viG-~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  266 (306)
                      ++|.++|.| ++-+|..+|..|++.|.+|.+..++        ..+..+.+.+.+++.|.++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~--------~~~~~~~~~~~~~~~g~~~   70 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN--------STESAEEVVAAIKKNGSDA   70 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC--------chHHHHHHHHHHHhhCCce
Confidence            477888877 4677899999999999999998875        3444455666666666544

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=81.56  E-value=0.96  Score=31.81  Aligned_cols=31  Identities=26%  Similarity=0.176  Sum_probs=28.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~  239 (306)
                      +|.|||.|..|--+|..|.+.+.+|+.+.|.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999999999999999988775

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.56  E-value=0.84  Score=36.34  Aligned_cols=35  Identities=11%  Similarity=0.174  Sum_probs=30.1

Q ss_pred             CCCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           49 NENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ++++.++|.|| |+.|-..+.+|.+.|+   +|..+|+.
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~---~V~~~d~~   49 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQ---KVVGLDNF   49 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcC---EEEEEECC
Confidence            34568888876 9999999999999998   99999864

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=81.51  E-value=0.38  Score=37.87  Aligned_cols=39  Identities=18%  Similarity=0.428  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc----CCC----CCcEEEeccCCCC
Q 021871           51 NREFVIVGGGNAAGYAARTFVEH----GMA----DGRLCIVSKEAYA   89 (306)
Q Consensus        51 ~~~vvIIGgG~aGl~aA~~L~~~----g~~----~~~V~vie~~~~~   89 (306)
                      ..+++|+|+|-||+.+|..|...    |.+    ..++.++|+.-..
T Consensus        25 d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv   71 (308)
T d1o0sa1          25 QEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLV   71 (308)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEEC
T ss_pred             HcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCc
Confidence            46899999999999999998765    321    1269999986544

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.45  E-value=0.88  Score=36.19  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=29.0

Q ss_pred             CcE-EEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           52 REF-VIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        52 ~~v-vIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      ++| +|.|| |+.|-.++.+|.++|+   +|..+++...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~---~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY---EVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC---EEEEEECCCc
Confidence            467 67766 8999999999999999   9999998643

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=81.44  E-value=0.74  Score=33.29  Aligned_cols=37  Identities=16%  Similarity=0.384  Sum_probs=28.9

Q ss_pred             CCCCCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           48 ANENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        48 ~~~~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      ++++.+|.|||| |.+|....+-|.++  |..++..+-.+
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~H--P~~ei~~l~S~   39 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLANH--PQFRIKVMTAD   39 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTTC--SSEEEEEEECS
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHhC--CCceEEEEecc
Confidence            356779999998 99999999999876  55577666543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=81.34  E-value=1.1  Score=32.32  Aligned_cols=36  Identities=22%  Similarity=0.222  Sum_probs=32.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      .++++.|+|-|.+|..+|..+...+.+|..+.+.+.
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCceEEEeccccccccceeeeecccccccccccccc
Confidence            478899999999999999999999999999988754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=81.13  E-value=2.8  Score=31.76  Aligned_cols=49  Identities=27%  Similarity=0.205  Sum_probs=33.9

Q ss_pred             CeEE-EEcC-CHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCE
Q 021871          208 KKVV-VVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  265 (306)
Q Consensus       208 ~~v~-viG~-g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  265 (306)
                      |+|+ |.|+ +-+|..+|..|++.|.+|.+..|.+         +-.+.+.+.+++.|.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~---------~~l~~~~~~i~~~g~~   51 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND---------ATAKAVASEINQAGGH   51 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCc
Confidence            4664 4454 5579999999999999999998742         2334455556666654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.91  E-value=1.2  Score=32.60  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=31.8

Q ss_pred             CCeEEEEc-CCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871          207 AKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (306)
Q Consensus       207 ~~~v~viG-~g~~a~e~a~~l~~~~~~v~~~~~~~~~  242 (306)
                      .++|+|+| .|.+|..++..|.+.+.+|+.+.|.+.-
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~   39 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR   39 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhh
Confidence            47899999 5999999999999999999999987653

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=80.73  E-value=0.55  Score=36.92  Aligned_cols=34  Identities=15%  Similarity=0.230  Sum_probs=28.6

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        51 ~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +++|+|.|| |+.|-.++.+|.++|+   .+++++...
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~---~vi~~~~~~   36 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGD---VELVLRTRD   36 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT---EEEECCCTT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcC---EEEEecCch
Confidence            458999987 9999999999999998   777776543

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.73  E-value=1.1  Score=33.75  Aligned_cols=35  Identities=14%  Similarity=0.300  Sum_probs=28.9

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (306)
Q Consensus        51 ~~~vvIIGg-G~aGl~aA~~L~~~g~~~~~V~vie~~~~   88 (306)
                      .+.|+|.|| |--|.++|+.|+++|.   +|.+++....
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~---~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW---WVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence            468899988 4479999999999998   9999886543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=80.73  E-value=2.5  Score=32.11  Aligned_cols=51  Identities=20%  Similarity=0.260  Sum_probs=37.4

Q ss_pred             cCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCE
Q 021871          206 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  265 (306)
Q Consensus       206 ~~~~v~viG~-g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  265 (306)
                      ++|.++|.|+ +-+|..+|..|++.|.+|.+..|.         ++-.+.+.+.+++.|.+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~~~~~g~~   55 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN---------REALEKAEASVREKGVE   55 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHTTTSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCc
Confidence            4778888886 557899999999999999999874         22334455566666654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=80.54  E-value=0.93  Score=36.46  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=27.7

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871           52 REFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (306)
Q Consensus        52 ~~vvIIG-gG~aGl~aA~~L~~~g~~~~~V~vie~~~   87 (306)
                      +.|+|.| +|+.|-.++.+|.+.|+   +|+.+++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~---~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY---EVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC---EEEEEECCC
Confidence            4566888 69999999999999998   999999864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.48  E-value=1.2  Score=32.67  Aligned_cols=33  Identities=15%  Similarity=0.244  Sum_probs=29.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 021871          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (306)
Q Consensus       209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~  241 (306)
                      +|.|||.|..|.-+|..+++.|.+|+.++..+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~   34 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence            589999999999999999999999998887543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=80.45  E-value=0.68  Score=33.00  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=22.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHHHHcCCCC---CcEEEeccC
Q 021871           50 ENREFVIVGGGNAAGYAARTFVEHGMAD---GRLCIVSKE   86 (306)
Q Consensus        50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~---~~V~vie~~   86 (306)
                      +..+|+|||||..|...+....-...+.   .++.++|-+
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did   41 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDND   41 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSC
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCC
Confidence            3468999999988755443322221221   368888855

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.22  E-value=1.6  Score=27.21  Aligned_cols=32  Identities=22%  Similarity=0.091  Sum_probs=25.7

Q ss_pred             CcEEEEcCChHHHHH-HHHHHHcCCCCCcEEEeccC
Q 021871           52 REFVIVGGGNAAGYA-ARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        52 ~~vvIIGgG~aGl~a-A~~L~~~g~~~~~V~vie~~   86 (306)
                      .+|-+||-|=+|+++ |+.|.++|+   .|+--|..
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~---~VsGSD~~   34 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGN---DVYGSNIE   34 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCC---eEEEEeCC
Confidence            478899988888865 788889998   88877754

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=80.21  E-value=1.2  Score=32.40  Aligned_cols=35  Identities=14%  Similarity=0.121  Sum_probs=30.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (306)
Q Consensus        49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~   86 (306)
                      -..+.|.|||-|-.|-.+|..|...|.   +|..+++.
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~---~v~~~d~~   81 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGF---NVLFYDPY   81 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC---EEEEECTT
T ss_pred             eeCceEEEeccccccccceeeeecccc---ceeeccCc
Confidence            345799999999999999999999998   89988864