Citrus Sinensis ID: 021885

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVLYW
cccccEEEEEcccccEEccccccccccEEEccccccccccccHHHHccccccccccHHHHHcccccEEccccccccccccHHHHHHHHHHcccccccccccccEEcccccccccHHHHHHHHHHHHcccccEEEEEEHHHHHHHcccccEEEEEEcccccEEEEEcccccccccccHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHccEEcccHHHHHHHcccccccEEEEEcccccEEEEccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHccccccccccc
cccccEEEEEEcccEEEEEEcccccccEEEEccEEEEccccccccccccccccEEcHHHHHcHHHEEEEccEEccEEccHHHHHHHHHHHHHccccccHHHccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHcccccEEEEEEccccEEEEEEEccEEcHHHcEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccccccEEEEcccccEEEEccHHHHcHHHHccHHHccccccccHHHHHHHHHHcccHHHHHHHHHEEEEEEEcc
mdnrnvvvcdngtgyvkcgfagenfpnsvfpcvvgrpmlryEESLMEQELKDTIVGAAALDLRhqldvsypvnngivqnwedmgqvWDHAFFselkidppeckilltdpplnpaknREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLvidsgdgvthvvpvvdgysfphltKRMNVAGRHITSYLVDLLSrrgysmnrtadFETVRQIKEKLCYISYDYKREYQLGLETTILVKnytlpdgrvikvgterfqapealftpvsLYFFSVVFyplklthaihcscstehaiistlpdhfvlyw
mdnrnvvvcdnGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILltdpplnpaKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYsmnrtadfetvrqIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVLYW
MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVLYW
*****VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDP*********KMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVLYW
*DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQ*****TILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVLYW
MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVLYW
***RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVLYW
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVLYW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query306 2.2.26 [Sep-21-2011]
Q6Z256389 Actin-related protein 2 O yes no 0.866 0.681 0.883 1e-143
A2YUL5389 Actin-related protein 2 O N/A no 0.866 0.681 0.883 1e-142
Q9LSD6389 Actin-related protein 2 O yes no 0.866 0.681 0.886 1e-142
O96621392 Actin-related protein 2 O yes no 0.866 0.676 0.646 1e-105
P53487388 Actin-related protein 2 O N/A no 0.866 0.682 0.645 1e-104
Q5BL41394 Actin-related protein 2 O yes no 0.859 0.667 0.636 1e-101
P53488394 Actin-related protein 2 O yes no 0.859 0.667 0.632 1e-101
Q5M7U6394 Actin-related protein 2 O yes no 0.859 0.667 0.632 1e-101
P61161394 Actin-related protein 2 O yes no 0.859 0.667 0.632 1e-101
P61160394 Actin-related protein 2 O yes no 0.859 0.667 0.632 1e-101
>sp|Q6Z256|ARP2_ORYSJ Actin-related protein 2 OS=Oryza sativa subsp. japonica GN=ARP2 PE=3 SV=1 Back     alignment and function desciption
 Score =  506 bits (1302), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 234/265 (88%), Positives = 254/265 (95%)

Query: 1   MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAAL 60
           MD+ NVVVCDNGTGYVKCGFAGENFP SVFPCVVGRP+LRYEESL EQEL D +VGAA  
Sbjct: 1   MDSGNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLQEQELTDIVVGAACA 60

Query: 61  DLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKM 120
           DLRHQLDVSYPV NGIVQ+W+DMG +WDHAF+SELK+DP ECKILLTDPPLNP KNREKM
Sbjct: 61  DLRHQLDVSYPVTNGIVQSWDDMGHIWDHAFYSELKVDPSECKILLTDPPLNPVKNREKM 120

Query: 121 VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180
           +ETMFEKYNFAGVFIQ+QAVL+LYAQGLLTGLVIDSGDGVTHVVPVVDG+S+PH+TKRMN
Sbjct: 121 IETMFEKYNFAGVFIQVQAVLSLYAQGLLTGLVIDSGDGVTHVVPVVDGFSYPHITKRMN 180

Query: 181 VAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN 240
           VAGRHITSYLVDLLSRRGY+MN++ADFETVR+IKEKLCY+SYDYKREYQLGLETTILVK+
Sbjct: 181 VAGRHITSYLVDLLSRRGYAMNKSADFETVREIKEKLCYLSYDYKREYQLGLETTILVKS 240

Query: 241 YTLPDGRVIKVGTERFQAPEALFTP 265
           YTLPDGRVIKVGTERFQAPEALFTP
Sbjct: 241 YTLPDGRVIKVGTERFQAPEALFTP 265
Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. Regulates the directionality of cell expansion by regulating the actin organization, and thus the microtubules distribution and the fusion of small vacuoles.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|A2YUL5|ARP2_ORYSI Actin-related protein 2 OS=Oryza sativa subsp. indica GN=ARP2 PE=2 SV=2 Back     alignment and function description
>sp|Q9LSD6|ARP2_ARATH Actin-related protein 2 OS=Arabidopsis thaliana GN=ARP2 PE=1 SV=1 Back     alignment and function description
>sp|O96621|ARP2_DICDI Actin-related protein 2 OS=Dictyostelium discoideum GN=arpB PE=1 SV=1 Back     alignment and function description
>sp|P53487|ARP2_ACACA Actin-related protein 2 OS=Acanthamoeba castellanii GN=arp2 PE=2 SV=1 Back     alignment and function description
>sp|Q5BL41|ARP2_XENTR Actin-related protein 2 OS=Xenopus tropicalis GN=actr2 PE=2 SV=1 Back     alignment and function description
>sp|P53488|ARP2_CHICK Actin-related protein 2 OS=Gallus gallus GN=ACTR2 PE=2 SV=1 Back     alignment and function description
>sp|Q5M7U6|ARP2_RAT Actin-related protein 2 OS=Rattus norvegicus GN=Actr2 PE=1 SV=1 Back     alignment and function description
>sp|P61161|ARP2_MOUSE Actin-related protein 2 OS=Mus musculus GN=Actr2 PE=1 SV=1 Back     alignment and function description
>sp|P61160|ARP2_HUMAN Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
255543673387 Actin, putative [Ricinus communis] gi|22 0.866 0.684 0.932 1e-147
225451511389 PREDICTED: actin-related protein 2 [Viti 0.866 0.681 0.928 1e-146
224055767389 predicted protein [Populus trichocarpa] 0.866 0.681 0.920 1e-144
356571581389 PREDICTED: actin-related protein 2-like 0.866 0.681 0.916 1e-144
449441714389 PREDICTED: actin-related protein 2-like 0.866 0.681 0.909 1e-143
414888207389 TPA: hypothetical protein ZEAMMB73_37383 0.866 0.681 0.901 1e-143
242051374389 hypothetical protein SORBIDRAFT_02g04368 0.866 0.681 0.898 1e-142
312282303389 unnamed protein product [Thellungiella h 0.866 0.681 0.894 1e-142
356561616389 PREDICTED: actin-related protein 2-like 0.866 0.681 0.905 1e-142
449490061390 PREDICTED: actin-related protein 2-like 0.866 0.679 0.902 1e-141
>gi|255543673|ref|XP_002512899.1| Actin, putative [Ricinus communis] gi|223547910|gb|EEF49402.1| Actin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/265 (93%), Positives = 257/265 (96%)

Query: 1   MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAAL 60
           MDNRNV+VCDNGTGYVKCGFAGENFP SVFPCVVGRPMLRYEESLME++LKD +VG A  
Sbjct: 1   MDNRNVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPMLRYEESLMEEQLKDAVVGEACA 60

Query: 61  DLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKM 120
           DLRHQLD+SYPVNNGIVQNW+DMG VWDHAFF+ELKIDP ECKILLTDPPLNP+KNREKM
Sbjct: 61  DLRHQLDISYPVNNGIVQNWDDMGHVWDHAFFNELKIDPTECKILLTDPPLNPSKNREKM 120

Query: 121 VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180
           VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN
Sbjct: 121 VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180

Query: 181 VAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN 240
           VAGRHITSYLVDLLSRRGY+MNRTADFE VR+IKEKLCYISYDYKREYQLGLETTILVKN
Sbjct: 181 VAGRHITSYLVDLLSRRGYAMNRTADFEAVREIKEKLCYISYDYKREYQLGLETTILVKN 240

Query: 241 YTLPDGRVIKVGTERFQAPEALFTP 265
           YTLPDGRVIKVGTERFQAPEALFTP
Sbjct: 241 YTLPDGRVIKVGTERFQAPEALFTP 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225451511|ref|XP_002272485.1| PREDICTED: actin-related protein 2 [Vitis vinifera] gi|296082315|emb|CBI21320.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224055767|ref|XP_002298643.1| predicted protein [Populus trichocarpa] gi|222845901|gb|EEE83448.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356571581|ref|XP_003553955.1| PREDICTED: actin-related protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449441714|ref|XP_004138627.1| PREDICTED: actin-related protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|414888207|tpg|DAA64221.1| TPA: hypothetical protein ZEAMMB73_373831 [Zea mays] Back     alignment and taxonomy information
>gi|242051374|ref|XP_002463431.1| hypothetical protein SORBIDRAFT_02g043680 [Sorghum bicolor] gi|241926808|gb|EER99952.1| hypothetical protein SORBIDRAFT_02g043680 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|312282303|dbj|BAJ34017.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|356561616|ref|XP_003549077.1| PREDICTED: actin-related protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449490061|ref|XP_004158496.1| PREDICTED: actin-related protein 2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
TAIR|locus:2092005389 ARP2 "AT3G27000" [Arabidopsis 0.866 0.681 0.886 1.7e-130
DICTYBASE|DDB_G0272106392 arpB "polyphosphate kinase com 0.866 0.676 0.646 5.2e-97
UNIPROTKB|P53488394 ACTR2 "Actin-related protein 2 0.856 0.664 0.634 2.7e-93
UNIPROTKB|A7MB62394 ACTR2 "Actin-related protein 2 0.866 0.672 0.630 2.7e-93
UNIPROTKB|P61160394 ACTR2 "Actin-related protein 2 0.866 0.672 0.630 2.7e-93
UNIPROTKB|B5APU3394 ACTR2 "Actin-related protein 2 0.866 0.672 0.630 2.7e-93
MGI|MGI:1913963394 Actr2 "ARP2 actin-related prot 0.866 0.672 0.630 2.7e-93
RGD|1310826394 Actr2 "ARP2 actin-related prot 0.866 0.672 0.630 2.7e-93
UNIPROTKB|Q5M7U6394 Actr2 "Actin-related protein 2 0.866 0.672 0.630 2.7e-93
ZFIN|ZDB-GENE-040426-2894394 actr2a "ARP2 actin-related pro 0.866 0.672 0.626 2.4e-92
TAIR|locus:2092005 ARP2 "AT3G27000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
 Identities = 235/265 (88%), Positives = 255/265 (96%)

Query:     1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAAL 60
             MDN+NVVVCDNGTGYVKCGFAGENFP SVFPCVVGRP+LRYEESLMEQ++KD +VG    
Sbjct:     1 MDNKNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCS 60

Query:    61 DLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKM 120
             +LRHQLD++YPV+NGIVQNW+DM  VWDHAF++ELKI+P +CKILLTDPPLNP+KNREKM
Sbjct:    61 ELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKM 120

Query:   121 VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180
             +ETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN
Sbjct:   121 IETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180

Query:   181 VAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN 240
             VAGRHIT+YLVDLLSRRGY+MN+TADFETVR+IKEKLCYISYDYKRE QLGLETTILVKN
Sbjct:   181 VAGRHITAYLVDLLSRRGYAMNKTADFETVREIKEKLCYISYDYKRESQLGLETTILVKN 240

Query:   241 YTLPDGRVIKVGTERFQAPEALFTP 265
             YTLPDGRVIKVGTERFQAPEALFTP
Sbjct:   241 YTLPDGRVIKVGTERFQAPEALFTP 265
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0030029 "actin filament-based process" evidence=TAS
GO:0000902 "cell morphogenesis" evidence=IMP
GO:0005885 "Arp2/3 protein complex" evidence=TAS
GO:0007015 "actin filament organization" evidence=IMP
GO:0009825 "multidimensional cell growth" evidence=IMP
GO:0030036 "actin cytoskeleton organization" evidence=TAS
GO:0010090 "trichome morphogenesis" evidence=IMP
DICTYBASE|DDB_G0272106 arpB "polyphosphate kinase component" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P53488 ACTR2 "Actin-related protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A7MB62 ACTR2 "Actin-related protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P61160 ACTR2 "Actin-related protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B5APU3 ACTR2 "Actin-related protein 2-like protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1913963 Actr2 "ARP2 actin-related protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310826 Actr2 "ARP2 actin-related protein 2 homolog (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5M7U6 Actr2 "Actin-related protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2894 actr2a "ARP2 actin-related protein 2a homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Z256ARP2_ORYSJNo assigned EC number0.88300.86600.6812yesno
P61160ARP2_HUMANNo assigned EC number0.63250.85940.6675yesno
P61161ARP2_MOUSENo assigned EC number0.63250.85940.6675yesno
P53488ARP2_CHICKNo assigned EC number0.63250.85940.6675yesno
P53489ARP2_CAEELNo assigned EC number0.60600.85940.6658yesno
A7MB62ARP2_BOVINNo assigned EC number0.63250.85940.6675yesno
Q9LSD6ARP2_ARATHNo assigned EC number0.88670.86600.6812yesno
Q5M7U6ARP2_RATNo assigned EC number0.63250.85940.6675yesno
Q5R4K0ARP2_PONABNo assigned EC number0.62870.85940.6675yesno
A2YUL5ARP2_ORYSINo assigned EC number0.88300.86600.6812N/Ano
Q5BL41ARP2_XENTRNo assigned EC number0.63630.85940.6675yesno
P45888ARP2_DROMENo assigned EC number0.62870.85940.6675yesno
P32381ARP2_YEASTNo assigned EC number0.60670.86600.6777yesno
O96621ARP2_DICDINo assigned EC number0.64660.86600.6760yesno
Q56A35ARP2B_DANRENo assigned EC number0.6250.85940.6675yesno
Q9UUJ1ARP2_SCHPONo assigned EC number0.59450.84640.6641yesno
Q7SXW6ARP2A_DANRENo assigned EC number0.62870.85940.6675yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037896001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (390 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
smart00268373 smart00268, ACTIN, Actin 1e-128
pfam00022367 pfam00022, Actin, Actin 1e-112
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 2e-97
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 3e-93
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 2e-86
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 4e-77
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 8e-68
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 6e-67
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 5e-15
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information 
 Score =  370 bits (952), Expect = e-128
 Identities = 147/265 (55%), Positives = 192/265 (72%), Gaps = 6/265 (2%)

Query: 4   RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLR 63
              +V DNG+G +K GFAGE+FP  VFP +VGRP        M  + KD  VG  A + R
Sbjct: 1   VPAIVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKG---MVGDAKDIFVGDEAQEKR 57

Query: 64  HQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVET 123
             L++ YP+ NGIV+NW+DM ++WD+ FF+EL+++P E  +LLT+PP+NP  NREK++E 
Sbjct: 58  GGLELKYPIENGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEI 117

Query: 124 MFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAG 183
           MFE +NF  ++I IQAVL+LYA G  TGLVIDSGDGVTHVVPVVDGY  PH  KR+++AG
Sbjct: 118 MFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAG 177

Query: 184 RHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLE---TTILVKN 240
           R IT YL +LLS RGY  N +A+FE VR+IKEKLCY++ D+++E +L  E   ++ L K 
Sbjct: 178 RDITDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKLARESSESSKLEKT 237

Query: 241 YTLPDGRVIKVGTERFQAPEALFTP 265
           Y LPDG  IKVG ERF+ PE LF+P
Sbjct: 238 YELPDGNTIKVGNERFRIPEILFSP 262

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 306
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00004378 actin-2; Provisional 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0681 645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 99.97
PRK13927334 rod shape-determining protein MreB; Provisional 99.96
KOG0797 618 consensus Actin-related protein [Cytoskeleton] 99.95
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 99.94
PRK13929335 rod-share determining protein MreBH; Provisional 99.94
PRK13928336 rod shape-determining protein Mbl; Provisional 99.87
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.84
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.67
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.23
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.09
PLN03184 673 chloroplast Hsp70; Provisional 98.74
CHL00094 621 dnaK heat shock protein 70 98.71
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 98.68
PRK01433 595 hscA chaperone protein HscA; Provisional 98.66
PTZ00400 663 DnaK-type molecular chaperone; Provisional 98.61
PRK05183 616 hscA chaperone protein HscA; Provisional 98.58
PRK13410 668 molecular chaperone DnaK; Provisional 98.58
PTZ00009 653 heat shock 70 kDa protein; Provisional 98.57
PRK13411 653 molecular chaperone DnaK; Provisional 98.56
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 98.55
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 98.55
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 98.44
PRK11678450 putative chaperone; Provisional 98.32
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 98.28
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 98.23
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 98.2
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 98.02
PRK09472420 ftsA cell division protein FtsA; Reviewed 98.0
PRK13917344 plasmid segregation protein ParM; Provisional 97.98
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 97.61
PRK10719 475 eutA reactivating factor for ethanolamine ammonia 97.51
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 97.41
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 97.03
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 96.95
PF06277 473 EutA: Ethanolamine utilisation protein EutA; Inter 96.73
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 96.63
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 96.58
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 96.53
COG4820277 EutJ Ethanolamine utilization protein, possible ch 96.14
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 95.76
TIGR03706300 exo_poly_only exopolyphosphatase. It appears that 94.61
PRK11031 496 guanosine pentaphosphate phosphohydrolase; Provisi 94.43
PRK10854 513 exopolyphosphatase; Provisional 93.69
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 92.91
COG0248 492 GppA Exopolyphosphatase [Nucleotide transport and 91.79
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 89.52
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 89.21
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 88.37
COG4819 473 EutA Ethanolamine utilization protein, possible ch 87.67
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 87.43
COG1521251 Pantothenate kinase type III (Bvg accessory factor 86.98
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 86.96
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 86.45
PRK13321256 pantothenate kinase; Reviewed 82.88
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 81.13
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=7.2e-72  Score=471.10  Aligned_cols=296  Identities=62%  Similarity=1.077  Sum_probs=289.0

Q ss_pred             CCCCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccCCceeeceeecCeeech
Q 021885            1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNW   80 (306)
Q Consensus         1 ~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~   80 (306)
                      ||++++||.|+|+...|+||||++.|.++|||.+|+|..+...+.+....+++.+|+++.+.|+.+.+.||+++|.+.||
T Consensus         1 Md~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnw   80 (389)
T KOG0677|consen    1 MDSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNW   80 (389)
T ss_pred             CCCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccCh
Confidence            88999999999999999999999999999999999998888888777788999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCc
Q 021885           81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGV  160 (306)
Q Consensus        81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~  160 (306)
                      |+++++|+|.|.++|++++.+..++++|||++|.+.|++|+|.+||+|++.++|+.-|+++++||.|..||+|||+|.+.
T Consensus        81 ddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGV  160 (389)
T KOG0677|consen   81 DDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGV  160 (389)
T ss_pred             HHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhhcccCCcccce
Q 021885          161 THVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN  240 (306)
Q Consensus       161 t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~~~~~~~~~~~  240 (306)
                      |+|+||++|++++|-.++++++|+++|+||.++|.++|+.++...+.+.++++||++||++.|++.+.+.+.+.+....+
T Consensus       161 THi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~  240 (389)
T KOG0677|consen  161 THIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVES  240 (389)
T ss_pred             eEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888889999999


Q ss_pred             EECCCccEEEECCccccccccCCCCCCCCCCCcccchhhhhcccccCCCchhhhhh
Q 021885          241 YTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIIS  296 (306)
Q Consensus       241 y~lPdg~~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (306)
                      |.||||.+|++|.|||.+||.||+|.+++.+++|+.++.++.|+..+||.|.++|.
T Consensus       241 YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYk  296 (389)
T KOG0677|consen  241 YTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYK  296 (389)
T ss_pred             eecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHh
Confidence            99999999999999999999999999999999999999999999999999997775

>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03706 exo_poly_only exopolyphosphatase Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription] Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>PRK13321 pantothenate kinase; Reviewed Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 1e-102
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 1e-102
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 1e-78
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 2e-78
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 2e-78
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 3e-78
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 4e-78
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 4e-78
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 4e-78
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 4e-78
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 5e-78
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 5e-78
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 5e-78
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 6e-78
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 6e-78
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 6e-78
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 7e-78
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 8e-78
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 8e-78
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 8e-78
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 1e-77
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 1e-77
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 1e-77
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 2e-77
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 2e-77
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 5e-77
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 1e-76
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 2e-76
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 3e-76
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 4e-76
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 4e-76
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 5e-76
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 5e-76
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 1e-75
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 1e-75
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 1e-75
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 3e-75
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 4e-75
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 2e-74
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 3e-74
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 5e-74
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 1e-38
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 2e-35
3qb0_A 498 Crystal Structure Of Actin-Related Protein Arp4 Fro 1e-16
4fo0_A 593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 2e-10
4i6m_A 477 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 3e-09
4i6m_B 439 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 2e-04
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure 
Iteration: 1

 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 167/264 (63%), Positives = 212/264 (80%), Gaps = 1/264 (0%)
Query: 3   NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL 62
            R VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  A +L
Sbjct: 5   GRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASEL 64
Query: 63  RHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSE-LKIDPPECKILLTDPPLNPAKNREKMV 121
           R  L+V+YP+ NGIV+NW+DM  +WD+ F  E L ID   CKILLT+PP+NP KNREK+V
Sbjct: 65  RSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIV 124
Query: 122 ETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNV 181
           E MFE Y F+GV++ IQAVLTLYAQGLLTG+V+DSGDGVTH+ PV +G+S PHLT+R+++
Sbjct: 125 EVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDI 184
Query: 182 AGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNY 241
           AGR IT YL+ LL  RGY+ N +ADFETVR IKEKLCY+ Y+ ++E +L LETT+LV++Y
Sbjct: 185 AGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESY 244
Query: 242 TLPDGRVIKVGTERFQAPEALFTP 265
           TLPDGR+IKVG ERF+APEALF P
Sbjct: 245 TLPDGRIIKVGGERFEAPEALFQP 268
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure
>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 477 Back     alignment and structure
>pdb|4I6M|B Chain B, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 439 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 1e-136
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 1e-133
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-131
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 1e-117
3qb0_A 498 Actin-related protein 4; actin fold, ATP binding, 1e-112
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
 Score =  391 bits (1005), Expect = e-136
 Identities = 169/268 (63%), Positives = 215/268 (80%), Gaps = 3/268 (1%)

Query: 1   MDN--RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAA 58
           MD+  R VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  
Sbjct: 1   MDSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDE 60

Query: 59  ALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSE-LKIDPPECKILLTDPPLNPAKNR 117
           A +LR  L+V+YP+ NGIV+NW+DM  +WD+ F  E L ID   CKILLT+PP+NP KNR
Sbjct: 61  ASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNR 120

Query: 118 EKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTK 177
           EK+VE MFE Y F+GV++ IQAVLTLYAQGLLTG+V+DSGDGVTH+ PV +G+S PHLT+
Sbjct: 121 EKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTR 180

Query: 178 RMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTIL 237
           R+++AGR IT YL+ LL  RGY+ N +ADFETVR IKEKLCY+ Y+ ++E +L LETT+L
Sbjct: 181 RLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVL 240

Query: 238 VKNYTLPDGRVIKVGTERFQAPEALFTP 265
           V++YTLPDGR+IKVG ERF+APEALF P
Sbjct: 241 VESYTLPDGRIIKVGGERFEAPEALFQP 268
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A 655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 99.93
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.62
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.55
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.38
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.37
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.24
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 99.22
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.06
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 98.92
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 98.83
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 98.77
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 98.73
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 98.66
3js6_A355 Uncharacterized PARM protein; partition, segregati 98.57
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 98.47
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 98.43
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 98.3
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 95.43
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 95.38
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 95.3
1u6z_A 513 Exopolyphosphatase; alpha/beta protein, askha (ace 93.96
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 93.73
3hi0_A 508 Putative exopolyphosphatase; 17739545, structural 93.24
3aap_A353 Ectonucleoside triphosphate diphosphohydrolase I; 93.12
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 90.09
3djc_A266 Type III pantothenate kinase; structural genomics, 83.17
2h3g_X268 Biosynthetic protein; pantothenate kinase, anthrax 81.86
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=3.5e-63  Score=471.96  Aligned_cols=286  Identities=23%  Similarity=0.376  Sum_probs=255.2

Q ss_pred             CCCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccc-cccccCCceeeceeecCeeech
Q 021885            2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAA-ALDLRHQLDVSYPVNNGIVQNW   80 (306)
Q Consensus         2 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~p~~~g~i~~~   80 (306)
                      ++.++||||+||++||+||+|++.|+.++||++++++...        .+..++|++ +...++.+.+++|+++|+|+||
T Consensus        21 de~~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~--------~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dw   92 (498)
T 3qb0_A           21 DEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADE--------GNKKIFSEQSIGIPRKDYELKPIIENGLVIDW   92 (498)
T ss_dssp             CCBSCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCS--------SCCEECCTTGGGSCCTTEEEEESEETTEESCH
T ss_pred             CCCCeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCC--------CccEEEecHHHhcCcCceEEeccCcCCEEccH
Confidence            5678999999999999999999999999999999976431        346789997 5667888999999999999999


Q ss_pred             hhHHHHHHHHhhcccCCCCCCC-eeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCC
Q 021885           81 EDMGQVWDHAFFSELKIDPPEC-KILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDG  159 (306)
Q Consensus        81 d~l~~ll~~~~~~~L~~~~~~~-~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~  159 (306)
                      |.++++|+|+|.+.|++++.++ |+|+++|+++++..|++++|++||+|++|+++++.+++||+||+|++||+|||+|++
T Consensus        93 d~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g  172 (498)
T 3qb0_A           93 DTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHD  172 (498)
T ss_dssp             HHHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSS
T ss_pred             HHHHHHHHHHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCC
Confidence            9999999999988899999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeecceecccceEEecccchhHHHHHHHHHhhc------------------CCccccC------C-hHHHHHHHH
Q 021885          160 VTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRR------------------GYSMNRT------A-DFETVRQIK  214 (306)
Q Consensus       160 ~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~------------------~~~~~~~------~-~~~~~~~iK  214 (306)
                      .|+|+||++|++++++++++++||+++|++|.++|+.+                  ++.+...      . ++++++++|
T Consensus       173 ~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iK  252 (498)
T 3qb0_A          173 TCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECK  252 (498)
T ss_dssp             CEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHH
T ss_pred             cEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999865                  2333221      1 455999999


Q ss_pred             Hhccccccc--hHHHHhhcccCCcccceEECCCccEEEECCc-cccccccCCCCCCCCC---------------------
Q 021885          215 EKLCYISYD--YKREYQLGLETTILVKNYTLPDGRVIKVGTE-RFQAPEALFTPVSLYF---------------------  270 (306)
Q Consensus       215 e~~~~vs~d--~~~~~~~~~~~~~~~~~y~lPdg~~i~l~~e-r~~~~E~lF~P~~~g~---------------------  270 (306)
                      |++|||+.|  +..+..  ...+...+.|+||||+.|.+++| ||.+||.||+|+++|+                     
T Consensus       253 E~~c~Va~~~~~~~~~~--~~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~  330 (498)
T 3qb0_A          253 ETLCHICPTKTLEETKT--ELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVP  330 (498)
T ss_dssp             HHTCCCCSSCHHHHHHH--HHHTCCCEEEECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCC
T ss_pred             HhhEEecCCccHhHHhh--hccCcCceEEECCCCCEEEECchHhhhCchhhCCHhHcCCccccccccccccccccccccc
Confidence            999999997  544321  22345678999999999999999 9999999999998866                     


Q ss_pred             -----------------------------------------------------------CCcccchhhhhcccccCCCch
Q 021885          271 -----------------------------------------------------------FSVVFYPLKLTHAIHCSCSTE  291 (306)
Q Consensus       271 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~  291 (306)
                                                                                 +..||++++.++|.+|++|-|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r  410 (498)
T 3qb0_A          331 LKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLR  410 (498)
T ss_dssp             CCBCC-----------------------------------------------------CCSCCHHHHHHHHHHTSCTTTH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhCCHHHH
Confidence                                                                       668999999999999999999


Q ss_pred             hhhhhc
Q 021885          292 HAIIST  297 (306)
Q Consensus       292 ~~~~~~  297 (306)
                      ++|+.+
T Consensus       411 ~~L~~n  416 (498)
T 3qb0_A          411 ATLAHN  416 (498)
T ss_dssp             HHHHTT
T ss_pred             HHHhcC
Confidence            977754
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A* Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} Back     alignment and structure
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 306
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 1e-50
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 5e-47
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 3e-43
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 1e-39
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 3e-36
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  162 bits (410), Expect = 1e-50
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)

Query: 7   VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQL 66
           +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L
Sbjct: 2   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGIL 59

Query: 67  DVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFE 126
            + YP+ +GI+ NW+DM ++W H F++EL++ P E   LLT+ PLNP  NREKM + MFE
Sbjct: 60  TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 119

Query: 127 KYNFAGVFIQIQAVLTLYAQG 147
            +N   +++ IQAVL+LYA G
Sbjct: 120 TFNVPAMYVAIQAVLSLYASG 140
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.97
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 99.97
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.94
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 98.2
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 97.65
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 97.45
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 97.25
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 94.46
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 94.37
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 92.06
d1q18a1110 Glucokinase Glk {Escherichia coli [TaxId: 562]} 91.05
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 90.85
d2fsja2164 Hypothetical protein Ta0583 {Archaeon Thermoplasma 89.93
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 88.26
d2zgya1157 Plasmid segregation protein ParM {Escherichia coli 87.01
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 86.8
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 85.63
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-36  Score=243.82  Aligned_cols=147  Identities=32%  Similarity=0.567  Sum_probs=128.6

Q ss_pred             CCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhh------hcccCCceEeccccccccCCceeeceeecCee
Q 021885            4 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESL------MEQELKDTIVGAAALDLRHQLDVSYPVNNGIV   77 (306)
Q Consensus         4 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i   77 (306)
                      .++||||+||+++|||||||+.|+.++||++|.++.....+.      .+....++++|+++.. +..+.+.+|+++|.+
T Consensus         3 ~PavViD~GS~~~KaG~age~~P~~i~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~ig~e~~~-~~~~~~~~pi~~G~i   81 (158)
T d1k8ka1           3 LPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIE-KPTYATKWPIRHGIV   81 (158)
T ss_dssp             SCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTS-CTTSEEECCEETTEE
T ss_pred             CCcEEEECCCCeEEEEECCCCCCCEEeccceeecccccccCchhcccccCCCccceecChhhhh-CCCccccccccCCeE
Confidence            478999999999999999999999999999998754332110      1223357899999874 556889999999999


Q ss_pred             echhhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeE
Q 021885           78 QNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTG  151 (306)
Q Consensus        78 ~~~d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tg  151 (306)
                      .|||.++.+|+|++.+.|.++++++|++++||+++++..|++++|+|||+|++|+++++.+++||+||+|++++
T Consensus        82 ~dwd~~e~l~~~~~~~~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~~~  155 (158)
T d1k8ka1          82 EDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQ  155 (158)
T ss_dssp             SCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTT
T ss_pred             ecHHHHHHHHHHHHHHhcccCCCCCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCCCC
Confidence            99999999999999899999999999999999999999999999999999999999999999999999999875
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure