Citrus Sinensis ID: 021896

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MDWDLQAIVRGCSTEASIDSVMDKPQSYNFSPSSLQQDVRFKFPDVSETTTILDELEELYKPFYPQTILTSTSISAPTEVNKKPKKLRKQQRKLSDSASNTDHPAAQPKGGKNQHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNHGHPTRRSALAGSTRSKLASMSKAQGPAQNKPLEPASEASAELGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFPSLEDLEGFLLDQFPDHNINMSADDNSWFIDESVTLNGGL
Secondary Structure (PSIPRED)
cccccccEEccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHccccEcccccccccEEEEccccccccHHEEEEccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccEEccccHccccc
Coil and Loop (DISEMBL)
MDWDLQAIVRGCSteasidsvmdkpqsynfspsslqqdvrfkfpdvsetTTILDELEelykpfypqtiltstsisaptevnkkpkKLRKQQRklsdsasntdhpaaqpkggknqhkRVVQRVTADCLACDKWawrkygqkpikgspyprsyyrcssskgclarkqverssadpgVFIITygaehnhghptrrsalagstrSKLASMskaqgpaqnkplepaseasaelgdlvyqgnikkedenvfldgqeielvmpdltfsdelmfpsledlegflldqfpdhninmsaddnswfidESVTLNGGL
Flexible Loop (DISEMBL)
MDWDLQAIVRGCSTEASIDSVMDKPQSYNFSPSSLQQDVRFKFPDVSETTTILDELEELYKPFYPQTILtstsisaptevnkkpkklrkqqrklsdsasntdhpaaqpkggknqhkrVVQRVTADCLAcdkwawrkygqkpikgspyprsYYRCSSSKGCLARKQVERSSADPGVFIITYgaehnhghptrRSALAGSTRSKLASMSKaqgpaqnkplepaSEASAELGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFPSLEDLEGFLLDQFPDHNINMSADDNSWFIDESVTLNGGL
Low Complexity Region (SEG)
MDWDLQAIVRGCSTEASIDSVMDKPQSYNFSPSSLQQDVRFKFPDVSetttildeleelYKPFYPQTILTSTSISAPTEVNkkpkklrkqqrklSDSASNTDHPAAQPKGGKNQHKRVVQRVTADCLACDKWAWRKYGQKPIKGspyprsyyrcsssKGCLARKQVERSSADPGVFIITYGAEHNHGHPTRRSALAGSTRSKLASMSKAQGPAQNKPLEPASEASAELGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFPSLEDLEGFLLDQFPDHNINMSADDNSWFIDESVTLNGGL
Disordered region (IsUnstruct)
******AIVR*****************************RFKFPDVSETTTILDELEELYKPFYPQTILT***********************************************VVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLA**********PGVFIITYGA***********************************************DLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFPSLEDLEGFLLDQFPDHNINMSADDNSWFIDE********
Disordered Region (DISOPRED)
MDWDLQAI********************************************************************************************************************DCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNH**************************************************************************************************************DESVT*****
Disordered Region (DISEMBL)
MDWDLQAIVRGCSTEASIDSVMDKPQSYNFSPSSLQQDVRFKFPDVSETTTILDELEELYKPFYPQTILTSTSIS*******************************************VQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNH************************************EASAELGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFPSLEDLEGFLLDQFPDHNINMSADDNSWFIDESVTLNGGL
Disordered Region (DISPRO)
MDWDLQAIVRGCSTEASIDSVMDKP*****************************************************************************************HKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHN*********************************************************************************PS*EDLEGFLLDQFPDHNINMSADDNSWFI**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDWDLQAIVRGCSTEASIDSVMDKPQSYNFSPSSLQQDVRFKFPDVSETTTILDELEELYKPFYPQTILTSTSISAPTEVNKKPKKLRKQQRKLSDSASNTDHPAAQPKGGKNQHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNHGHPTRRSALAGSTRSKLASMSKAQGPAQNKPLEPASEASAELGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFPSLEDLEGFLLDQFPDHNINMSADDNSWFIDESVTLNGGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	306	2.2.26 [Sep-21-2011]
O04609	298	WRKY transcription factor	yes	no	0.915	0.939	0.396	6e-48
Q9SUS1	304	Probable WRKY transcripti	no	no	0.846	0.851	0.444	5e-45
Q9FLX8	348	Probable WRKY transcripti	no	no	0.297	0.261	0.714	1e-34
Q9FL92	1372	Probable WRKY transcripti	no	no	0.480	0.107	0.479	9e-29
O64747	427	Probable WRKY transcripti	no	no	0.281	0.201	0.621	2e-28
Q9SA80	430	Probable WRKY transcripti	no	no	0.539	0.383	0.394	2e-27
Q93WV5	271	Probable WRKY transcripti	no	no	0.316	0.357	0.532	6e-24
Q9LP56	259	Probable WRKY transcripti	no	no	0.222	0.262	0.705	5e-23
Q9FH83	1288	Probable WRKY transcripti	no	no	0.385	0.091	0.456	7e-21
O04336	380	Probable WRKY transcripti	no	no	0.186	0.15	0.701	5e-20

>sp|O04609|WRK22_ARATH WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1

 Score =  191 bits (485), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 127/320 (39%), Positives = 175/320 (54%), Gaps = 40/320 (12%)

Query: 2   DWDLQAIVRGCSTEASIDSVMDKPQSYNFSPS-SLQQDVRFKFPDVSETTTILDELEELY 60
           DWDL A+VRGCS      +V     +  +SP  S   +  F     S   +   E+ +LY
Sbjct: 4   DWDLHAVVRGCS------AVSSSATTTVYSPGVSSHTNPIFTVGRQSNAVS-FGEIRDLY 56

Query: 61  KPFYPQTILTSTS-ISAPTEVNKKPKKLRKQQRKLSDSASN---TDHPA----AQPKGGK 112
            PF  +++++S S I+ P E    P+K + Q+R LS SAS+   T  P+    ++ K  K
Sbjct: 57  TPFTQESVVSSFSCINYPEE----PRKPQNQKRPLSLSASSGSVTSKPSGSNTSRSKRRK 112

Query: 113 NQHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSAD 172
            QHK+V   V A+ L  D WAWRKYGQKPIKGSPYPR YYRCS+SKGCLARKQVER+ +D
Sbjct: 113 IQHKKVCH-VAAEALNSDVWAWRKYGQKPIKGSPYPRGYYRCSTSKGCLARKQVERNRSD 171

Query: 173 PGVFIITYGAEHNHGHPTRRSALAGSTRSKLASMSKAQGPA------QNKPLEPASEASA 226
           P +FI+TY AEHNH  PT R++LAGSTR K +    ++ P        + P+  A E   
Sbjct: 172 PKMFIVTYTAEHNHPAPTHRNSLAGSTRQKPSDQQTSKSPTTTIATYSSSPVTSADEFVL 231

Query: 227 ELGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFPSLEDLEGFLLDQFPDHNIN 286
            + D +  G+         LDG+E  L + D   SD+      + LE F        N  
Sbjct: 232 PVEDHLAVGD---------LDGEEDLLSLSDTVVSDDF----FDGLEEFAAGDSFSGNSA 278

Query: 287 MSADDNSWFIDESVTLNGGL 306
            ++ D SW ++ + T  GG+
Sbjct: 279 PASFDLSWVVNSAATTTGGI 298

Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUS1|WRK29_ARATH Probable WRKY transcription factor 29 OS=Arabidopsis thaliana GN=WRKY29 PE=2 SV=1

 Score =  181 bits (460), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/286 (44%), Positives = 161/286 (56%), Gaps = 27/286 (9%)

Query: 4   DLQAIVRGCSTEASIDSVMDKPQSYNFSPSSLQQDVRFKFPDVSETTTILDELEELYKPF 63
           DL+AIVRG S   S D+   +  S  FSPS         F +    T+ LDEL ELYKPF
Sbjct: 5   DLEAIVRGYS--GSGDAFSGE-SSGTFSPSFCLPMETSSFYEPEMETSGLDELGELYKPF 61

Query: 64  YP---QTILTSTSISAPTEVNKKPKKLRKQQRK---LSDSASNTDH----PAAQPKGGKN 113
           YP   QTILTS S+S P   + KP +  K+QR    L  + S  DH     +   K  KN
Sbjct: 62  YPFSTQTILTS-SVSLPE--DSKPFRDDKKQRSHGCLLSNGSRADHIRISESKSKKSKKN 118

Query: 114 QHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADP 173
           Q KRVV++V  + L  D WAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVER+  +P
Sbjct: 119 QQKRVVEQVKEENLLSDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERNPQNP 178

Query: 174 GVFIITYGAEHNHGHPTRRSALAGSTRSKLA----SMSK------AQGPAQNKPLEPASE 223
             F ITY  EHNH  PTRR++LAGSTR+K +    +++K         P  N  +  A E
Sbjct: 179 EKFTITYTNEHNHELPTRRNSLAGSTRAKTSQPKPTLTKKSEKEVVSSPTSNPMIPSADE 238

Query: 224 ASAELGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFPSL 269
           +S  + ++        +     ++G+ +   +P    S    FPS 
Sbjct: 239 SSVAVQEMSVAETSTHQAAGA-IEGRRLSNGLPSDLMSGSGTFPSF 283

Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLX8|WRK27_ARATH Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/91 (71%), Positives = 75/91 (82%)

Query: 112 KNQHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSA 171
           KNQ KR +  VT + L+ D WAWRKYGQKPIKGSPYPR+YYRCSSSKGCLARKQVERS+ 
Sbjct: 148 KNQQKRTICHVTQENLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCLARKQVERSNL 207

Query: 172 DPGVFIITYGAEHNHGHPTRRSALAGSTRSK 202
           DP +FI+TY  EH H  PT R++LAGSTR+K
Sbjct: 208 DPNIFIVTYTGEHTHPRPTHRNSLAGSTRNK 238

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  127 bits (320), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 101/167 (60%), Gaps = 20/167 (11%)

Query: 113  NQHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSAD 172
            N+ KRVV  V     + D W WRKYGQKPIK SPYPRSYYRC+SSKGC ARKQVERS  D
Sbjct: 1164 NKEKRVVCVVDRGSRSSDLWVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTD 1223

Query: 173  PGVFIITYGAEHNHGHPTRRSALAGS-----------TRSKLASMSK-AQGPAQNKPLEP 220
            P V +ITY +EHNH  PT R+ LAGS           T S  +++S+  +GP  +K   P
Sbjct: 1224 PNVSVITYISEHNHPFPTLRNTLAGSTRSSSSKCSDVTTSASSTVSQDKEGP--DKSHLP 1281

Query: 221  ASEASAELGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFP 267
            +S AS     +V    +K+ED   + D  E ++ + + TF  EL FP
Sbjct: 1282 SSPASPPYAAMV----VKEEDMEQW-DNMEFDVDVEEDTFIPEL-FP 1322

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64747|WRK35_ARATH Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 69/95 (72%), Gaps = 9/95 (9%)

Query: 112 KNQHKRVV---------QRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLA 162
           K+Q K+VV          R + + +  D WAWRKYGQKPIKGSPYPR YYRCSSSKGC A
Sbjct: 189 KSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSA 248

Query: 163 RKQVERSSADPGVFIITYGAEHNHGHPTRRSALAG 197
           RKQVERS  DP + +ITY +EHNH  PT+R+ALAG
Sbjct: 249 RKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAG 283

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA80|WRK14_ARATH Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 105/208 (50%), Gaps = 43/208 (20%)

Query: 112 KNQHKRVV---------QRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLA 162
           K+Q K+VV          R + + +  D WAWRKYGQKPIKGSP+PR YYRCSSSKGC A
Sbjct: 191 KSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPFPRGYYRCSSSKGCSA 250

Query: 163 RKQVERSSADPGVFIITYGAEHNHGHPTRRSALAGS---------------------TRS 201
           RKQVERS  DP + +ITY +EHNH  P +R+ALAGS                       S
Sbjct: 251 RKQVERSRTDPNMLVITYTSEHNHPWPIQRNALAGSTRSSTSSSSNPNPSKPSTANVNSS 310

Query: 202 KLASMSKAQGPAQNKPLEPASEASA---ELGDLVYQGNIKKEDENVFLDGQEIELVMPDL 258
            + S +    P+   P  P   +SA   E GD +   N+  +D+N      +I    P+L
Sbjct: 311 SIGSQNTIYLPSSTTP-PPTLSSSAIKDERGDDMELENVDDDDDN------QIAPYRPEL 363

Query: 259 ---TFSDELMFPSLEDLEGFLLDQFPDH 283
                  +  F  LE+LEG  L     H
Sbjct: 364 HDHQHQPDDFFADLEELEGDSLSMLLSH 391

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV5|WRK69_ARATH Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1

 Score =  111 bits (278), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 63/107 (58%), Gaps = 10/107 (9%)

Query: 108 PKGGKNQHKRVVQRVTADCLAC----------DKWAWRKYGQKPIKGSPYPRSYYRCSSS 157
           PK  +N  KRVV    AD              D WAWRKYGQKPIKGSPYPR YYRCSSS
Sbjct: 39  PKKRRNVEKRVVSVPIADVEGSKSRGEVYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSS 98

Query: 158 KGCLARKQVERSSADPGVFIITYGAEHNHGHPTRRSALAGSTRSKLA 204
           KGC ARKQVERS  DP   +ITY  +HNH  P+  +      RS + 
Sbjct: 99  KGCPARKQVERSRVDPSKLMITYACDHNHPFPSSSANTKSHHRSSVV 145

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LP56|WRK65_ARATH Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 52/68 (76%)

Query: 130 DKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNHGHP 189
           D WAWRKYGQKPIKGSPYPR YYRCSS+KGC ARKQVERS  DP + +ITY +EHNH  P
Sbjct: 75  DSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHPWP 134

Query: 190 TRRSALAG 197
              S   G
Sbjct: 135 LTSSTRNG 142

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  101 bits (251), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/127 (45%), Positives = 74/127 (58%), Gaps = 9/127 (7%)

Query: 87   LRKQQRKLSDSASN-----TDHPAAQPKGGKNQHKRVVQRVTADCLACDKWAWRKYGQKP 141
            L  Q   LSD  S+     +D P  + K  +++ K+VV     D    D W WRKYGQK 
Sbjct: 1163 LHGQSMLLSDCESSMTENLSDVPKKKKKHSESRVKKVVSIPAID--EGDLWTWRKYGQKD 1220

Query: 142  IKGSPYPRSYYRCSS--SKGCLARKQVERSSADPGVFIITYGAEHNHGHPTRRSALAGST 199
            I GS +PR YYRC+   + GC A KQV+RS  D  +  ITY +EHNH  PT+R ALA ST
Sbjct: 1221 ILGSRFPRGYYRCAYKFTHGCKATKQVQRSETDSNMLAITYLSEHNHPRPTKRKALADST 1280

Query: 200  RSKLASM 206
            RS  +S+
Sbjct: 1281 RSTSSSI 1287

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|O04336|WRK21_ARATH Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 46/57 (80%)

Query: 130 DKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNH 186
           D ++WRKYGQKPIKGSPYPR YY+CSS +GC ARK VER   DP + I+TY AEHNH
Sbjct: 314 DDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNH 370

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
297742244	323	unnamed protein product [Vitis vinifera]	0.686	0.650	0.573	2e-59
225426142	331	PREDICTED: WRKY transcription factor 22-	0.686	0.634	0.571	2e-58
255537591	334	WRKY transcription factor, putative [Ric	0.905	0.829	0.467	9e-58
224072019	330	predicted protein [Populus trichocarpa]	0.892	0.827	0.457	4e-57
15234113	298	WRKY transcription factor 22 [Arabidopsi	0.915	0.939	0.396	3e-46
389595894	304	WRKY22 [Catharanthus roseus]	0.843	0.848	0.419	9e-46
255541712	347	WRKY transcription factor, putative [Ric	0.915	0.806	0.399	3e-44
297810029	300	WRKY transcription factor 22 [Arabidopsi	0.924	0.943	0.394	4e-44
224064065	310	predicted protein [Populus trichocarpa]	0.859	0.848	0.396	4e-44
30686233	304	putative WRKY transcription factor 29 [A	0.846	0.851	0.444	3e-43

>gi|297742244|emb|CBI34393.3| unnamed protein product [Vitis vinifera]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/223 (57%), Positives = 157/223 (70%), Gaps = 13/223 (5%)

Query: 2   DWDLQAIVRGCS-TEASIDSVMDKPQSYNFSPSSLQQD-VRFKFPDVSETTTILDELEEL 59
           DWDLQ++VRGC+  EAS  + MD      F P ++QQD + F FPD  ETTT+LDELE+L
Sbjct: 3   DWDLQSVVRGCAINEASSAAFMDTSLPC-FGPLAIQQDELLFSFPDFFETTTVLDELEQL 61

Query: 60  YKPFYP--QTILTSTSISAPTEVNKKPKKLRKQQRKLSDSASNTDHPA----AQPKGGKN 113
           YKPFYP  Q +    + +AP+   + PKK+ K Q  L  +A N         A+PK  KN
Sbjct: 62  YKPFYPVLQPLSPVRTAAAPSISMEDPKKM-KGQDHLPGTADNGGGGPGSHGAKPKKRKN 120

Query: 114 QHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADP 173
           Q KRVVQ VTA+ L+ D WAWRKYGQKPIKGSPYPRSYYRCSS KGCLARKQVERS  DP
Sbjct: 121 QQKRVVQHVTAEGLSSDVWAWRKYGQKPIKGSPYPRSYYRCSSLKGCLARKQVERSRTDP 180

Query: 174 GVFIITYGAEHNHGHPTRRSALAGSTRSKLAS---MSKAQGPA 213
            +FI+TY AEH+H HPTRR++LAG TR+K ++    SKA+ P+
Sbjct: 181 EIFIVTYTAEHSHSHPTRRNSLAGITRNKFSTPKKPSKAEPPS 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426142|ref|XP_002278221.1| PREDICTED: WRKY transcription factor 22-like [Vitis vinifera]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 157/224 (70%), Gaps = 14/224 (6%)

Query: 2   DWDLQAIVRGCS-TEASIDSVMDKPQSYNFSPSSLQQD-VRFKFPDVSETTTILDELEEL 59
           DWDLQ++VRGC+  EAS  + MD      F P ++QQD + F FPD  ETTT+LDELE+L
Sbjct: 10  DWDLQSVVRGCAINEASSAAFMDTSLPC-FGPLAIQQDELLFSFPDFFETTTVLDELEQL 68

Query: 60  YKPFYP--QTILTSTSISAPTEVNKKPKKLRKQQRKLSDSASNTDHPA----AQPKGG-K 112
           YKPFYP  Q +    + +AP+   + PKK+ K Q  L  +A N         A+PK   K
Sbjct: 69  YKPFYPVLQPLSPVRTAAAPSISMEDPKKM-KGQDHLPGTADNGGGGPGSHGAKPKKSRK 127

Query: 113 NQHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSAD 172
           NQ KRVVQ VTA+ L+ D WAWRKYGQKPIKGSPYPRSYYRCSS KGCLARKQVERS  D
Sbjct: 128 NQQKRVVQHVTAEGLSSDVWAWRKYGQKPIKGSPYPRSYYRCSSLKGCLARKQVERSRTD 187

Query: 173 PGVFIITYGAEHNHGHPTRRSALAGSTRSKLAS---MSKAQGPA 213
           P +FI+TY AEH+H HPTRR++LAG TR+K ++    SKA+ P+
Sbjct: 188 PEIFIVTYTAEHSHSHPTRRNSLAGITRNKFSTPKKPSKAEPPS 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537591|ref|XP_002509862.1| WRKY transcription factor, putative [Ricinus communis] gi|223549761|gb|EEF51249.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  229 bits (585), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 151/323 (46%), Positives = 188/323 (58%), Gaps = 46/323 (14%)

Query: 2   DWDLQAIVRGCSTEASIDSVM--DKPQSYNFSPSSLQQDVRFKF---PDVSETTTILDEL 56
           DWDL+A+VRGCST  +   +M  + P S     S+L QD R +    PD  E  T   + 
Sbjct: 9   DWDLEAVVRGCSTNEAFADIMINNNPPSVLSPLSTLDQDDRQELLSSPDFFEFATKDFDY 68

Query: 57  ---EELYKP--FYP-------QTILTSTS-ISAPTEVNKKPKKLRKQQRKLSDSASNTDH 103
              +E YKP  FYP       Q+IL+ TS +S P+   ++P+KL+K+       A  +  
Sbjct: 69  GVEKETYKPLLFYPNQQALSPQSILSPTSSMSIPSYDGQEPEKLQKKHLFSESDAPVSCS 128

Query: 104 PAAQPKGGKNQ------HKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSS 157
             A P   K++        RVV+ VTAD L+ D WAWRKYGQKPIKGSPYPRSYYRCSS 
Sbjct: 129 DDATPLASKSKRCRKSAQNRVVKHVTADGLSSDMWAWRKYGQKPIKGSPYPRSYYRCSSL 188

Query: 158 KGCLARKQVERSSADPGVFIITYGAEHNHGHPTRRSALAGSTRSKLASMSKAQG------ 211
           KGCLARKQVERSS+DP +FIITY AEH+H HPTRR++LAGSTR K +SM+K         
Sbjct: 189 KGCLARKQVERSSSDPSIFIITYTAEHSHAHPTRRNSLAGSTRIK-SSMAKQANKSSEPN 247

Query: 212 -------------PAQNKPLEPASEASAELGDLVYQGNIKKEDENVFLDG-QEIELVMPD 257
                        P+   PL  AS    E+   V   N + E+E +  D     E+VMPD
Sbjct: 248 KPTIKGECLDTVLPSSITPLSMASTNEDEMVQHVRLKNEEAEEERILEDSISNQEIVMPD 307

Query: 258 LTFSDELMFPSLEDLEGFLLDQF 280
           + FSDEL FPSLED EG  LDQF
Sbjct: 308 IIFSDEL-FPSLEDFEGLFLDQF 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072019|ref|XP_002303610.1| predicted protein [Populus trichocarpa] gi|222841042|gb|EEE78589.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 144/315 (45%), Positives = 186/315 (59%), Gaps = 42/315 (13%)

Query: 3   WDLQAIVRGCSTEASID--SVMDKPQSYNFSPSSLQQDVRFKFPDVSETTTILDELEELY 60
           WDL A+VR  S+    D  ++ + P S  F+P S  QD    F    ET T  D L+ LY
Sbjct: 12  WDLHAVVRSGSSTNYEDFANITNNPPSL-FAPLSFYQDELLNF---QETPTDFDGLDGLY 67

Query: 61  KPFYP---QTILTSTS-----------ISAPTEVNKKPKKLRKQQRKLSDSASNTDH--- 103
           KP YP   QT  +  S           IS P EV ++ +K++K++    +SA+  +    
Sbjct: 68  KPLYPLLHQTFNSPQSNILSTSISTTSISVPKEVKER-QKVQKKKPVSPESATFANTVDA 126

Query: 104 -PAAQPKGGKNQHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLA 162
             AA+ K  KNQHK+VVQ V  D L+ D WAWRKYGQKPIKGSPYPRSYYRCSS KGCLA
Sbjct: 127 TSAAKSKRRKNQHKKVVQHVKEDGLSSDMWAWRKYGQKPIKGSPYPRSYYRCSSLKGCLA 186

Query: 163 RKQVERSSADPGVFIITYGAEHNHGHPTRRSALAGSTRSK--------------LASMSK 208
           RKQ+ERS  DP  FIITY AEH+H HPTRRS+LAGSTR K              + ++  
Sbjct: 187 RKQMERSRTDPSTFIITYTAEHSHAHPTRRSSLAGSTRIKPSMPKEATKNIEPNMPTIKD 246

Query: 209 AQGPAQNKPLEPASEASAELGDLVYQGNIKKEDENVFLDGQEI-ELVMPDLTFSDELMFP 267
              P  +  L P + +   + D + Q N+  ++E +   GQ + E+ +PD+ FSDEL FP
Sbjct: 247 ELSPNFDGVLSPTTPSVTSIEDELVQ-NVCIKNEELLDQGQVLDEIALPDILFSDEL-FP 304

Query: 268 SLEDLEGFLLDQFPD 282
           S+EDLEG LLD+F D
Sbjct: 305 SIEDLEGLLLDEFAD 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234113|ref|NP_192034.1| WRKY transcription factor 22 [Arabidopsis thaliana] gi|29839444|sp|O04609.1|WRK22_ARATH RecName: Full=WRKY transcription factor 22; AltName: Full=WRKY DNA-binding protein 22 gi|17064156|gb|AAL35285.1|AF442392_1 WRKY transcription factor 22 [Arabidopsis thaliana] gi|2191129|gb|AAB61016.1| similar to SPF1 DNA-binding protein [Arabidopsis thaliana] gi|7267622|emb|CAB80934.1| putative DNA-binding protein [Arabidopsis thaliana] gi|15028173|gb|AAK76583.1| putative DNA-binding protein [Arabidopsis thaliana] gi|19310809|gb|AAL85135.1| putative DNA-binding protein [Arabidopsis thaliana] gi|332656599|gb|AEE81999.1| WRKY transcription factor 22 [Arabidopsis thaliana]

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/320 (39%), Positives = 175/320 (54%), Gaps = 40/320 (12%)

Query: 2   DWDLQAIVRGCSTEASIDSVMDKPQSYNFSPS-SLQQDVRFKFPDVSETTTILDELEELY 60
           DWDL A+VRGCS      +V     +  +SP  S   +  F     S   +   E+ +LY
Sbjct: 4   DWDLHAVVRGCS------AVSSSATTTVYSPGVSSHTNPIFTVGRQSNAVS-FGEIRDLY 56

Query: 61  KPFYPQTILTSTS-ISAPTEVNKKPKKLRKQQRKLSDSASN---TDHPA----AQPKGGK 112
            PF  +++++S S I+ P E    P+K + Q+R LS SAS+   T  P+    ++ K  K
Sbjct: 57  TPFTQESVVSSFSCINYPEE----PRKPQNQKRPLSLSASSGSVTSKPSGSNTSRSKRRK 112

Query: 113 NQHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSAD 172
            QHK+V   V A+ L  D WAWRKYGQKPIKGSPYPR YYRCS+SKGCLARKQVER+ +D
Sbjct: 113 IQHKKVCH-VAAEALNSDVWAWRKYGQKPIKGSPYPRGYYRCSTSKGCLARKQVERNRSD 171

Query: 173 PGVFIITYGAEHNHGHPTRRSALAGSTRSKLASMSKAQGPA------QNKPLEPASEASA 226
           P +FI+TY AEHNH  PT R++LAGSTR K +    ++ P        + P+  A E   
Sbjct: 172 PKMFIVTYTAEHNHPAPTHRNSLAGSTRQKPSDQQTSKSPTTTIATYSSSPVTSADEFVL 231

Query: 227 ELGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFPSLEDLEGFLLDQFPDHNIN 286
            + D +  G+         LDG+E  L + D   SD+      + LE F        N  
Sbjct: 232 PVEDHLAVGD---------LDGEEDLLSLSDTVVSDDF----FDGLEEFAAGDSFSGNSA 278

Query: 287 MSADDNSWFIDESVTLNGGL 306
            ++ D SW ++ + T  GG+
Sbjct: 279 PASFDLSWVVNSAATTTGGI 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|389595894|gb|AFK88675.1| WRKY22 [Catharanthus roseus]

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 125/298 (41%), Positives = 170/298 (57%), Gaps = 40/298 (13%)

Query: 2   DWDLQAIVRGCSTEASIDSVMDKPQSYNFS---PSSLQQDVRFKFPDVSETT-TILDELE 57
           +W LQAIV G S  ++I S +  P S  +S     S  +D+   FPD+ ET  T  D LE
Sbjct: 8   NWGLQAIVGGKSFSSAI-SALPIPNSSCYSIMDHMSEHRDLANNFPDLFETMFTDDDRLE 66

Query: 58  ELYKPFYPQTILTSTSISAPTEVNKK---PKKLRKQQRKLSDSASNTDHPAAQPKGGKNQ 114
           +LYKPFYP     S+S S   +V +K    +  +K      +SA+  D+   + K  KNQ
Sbjct: 67  QLYKPFYPVVSSDSSSESITQQVEEKLFVEEDEKKSNFCPVESATTVDY-VPKYKRRKNQ 125

Query: 115 HKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPG 174
            K+VV +VTA+ L+ DKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVE+S  DP 
Sbjct: 126 QKKVVIQVTAEDLSSDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVEQSCKDPS 185

Query: 175 VFIITYGAEHNHGHPTRRSALAGSTR----------------SKLASMSKAQGPAQNKPL 218
           +FI+TY AEH+H  PT+++ALAG+ R                SKL + +K    +   PL
Sbjct: 186 IFIVTYTAEHSHSQPTKKNALAGTVRHKFPNPKTPSKATSSSSKLVAKAKDSSSSVPSPL 245

Query: 219 EPASEASAELGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFPSLEDLEGFL 276
            P+ E   +        +I+++D N+   G ++          D+  F  LEDL+  +
Sbjct: 246 IPSVENVKQ-----EMMSIEEDDNNIIFSGVKL----------DDEFFSGLEDLDELI 288

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541712|ref|XP_002511920.1| WRKY transcription factor, putative [Ricinus communis] gi|223549100|gb|EEF50589.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/318 (39%), Positives = 167/318 (52%), Gaps = 38/318 (11%)

Query: 2   DWDLQAIVRGCSTEASIDSVMDKPQSYNFSPSSLQ---------------QDVRFKFPDV 46
           DWDLQA+VRGC+T +   +V        ++ S +                    F  PD 
Sbjct: 11  DWDLQAVVRGCTTASPSVAVTTTTNIGGYASSFINTGDFYTQSCFGSESASGSLFSTPDP 70

Query: 47  SET--TTILDELEELYKPFYPQTILTSTSISAPTEVNKKPK---------KLRKQQRKLS 95
            ET    +  EL ELYKPF+P++  T+T +  P      P          KL+ QQ K S
Sbjct: 71  FETRNNNVTGELHELYKPFFPKSHQTTTCLYTPQGAPISPVVISKEQTQLKLQHQQPKQS 130

Query: 96  DSASNTDHPAAQPKGG--KNQHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYR 153
            + S T    +Q +    KNQ K++ Q V A+ L+ D WAWRKYGQKPIKGSPYPR YYR
Sbjct: 131 HTGSVTSSANSQTRSKRRKNQLKKICQ-VPAEALSSDVWAWRKYGQKPIKGSPYPRGYYR 189

Query: 154 CSSSKGCLARKQVERSSADPGVFIITYGAEHNHGHPTRRSALAGSTRSKLAS--MSKAQG 211
           CSSSKGCLARKQVER+ +DPG+FI+TY  EHNH  P  R++LAG TR K  +     A  
Sbjct: 190 CSSSKGCLARKQVERNRSDPGMFIVTYTGEHNHPAPAHRNSLAGITRQKTTAPQTVAASD 249

Query: 212 PAQNKPLEP--ASEASAELGDLVYQGNIKKEDENVFLDGQEIELV---MPDLTFSDELMF 266
             Q  PL+P  +S A++   DL+ Q    +  +       + E       D+T SD+  F
Sbjct: 250 SNQPSPLKPTCSSPATSLDDDLLPQSTNTESRDEKDTMEDDDEDEFGGFSDMTVSDDF-F 308

Query: 267 PSLEDLEGFLL-DQFPDH 283
             LE+L      D+F DH
Sbjct: 309 AGLEELASPATGDRFSDH 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810029|ref|XP_002872898.1| WRKY transcription factor 22 [Arabidopsis lyrata subsp. lyrata] gi|297318735|gb|EFH49157.1| WRKY transcription factor 22 [Arabidopsis lyrata subsp. lyrata]

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/319 (39%), Positives = 168/319 (52%), Gaps = 36/319 (11%)

Query: 2   DWDLQAIVRGCSTEASIDSVMDKPQSYNFSPSSLQQDVRFKFPDVSETTTILDELEELYK 61
           DWDL A+VRGCS   S  +       Y+   SS  + + F     S   +   E  +LY 
Sbjct: 4   DWDLHAVVRGCSA-VSSSATNTTTTVYSGGVSSHTKPI-FAVGRQSNAVS-FGEFRDLYT 60

Query: 62  PFYPQTILTSTS-ISAPTEVNKKPKKLRKQQRKLSDSASN-------TDHPAAQPKGGKN 113
           PF  +++++S S ++ P E    PKK + Q+R LS SAS+       T    ++ K  K 
Sbjct: 61  PFTQESVVSSFSCLNYPEE----PKKPQNQKRPLSLSASSGSVTSKPTGSNTSRSKRRKI 116

Query: 114 QHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADP 173
           QHK+V   V A+ L  D WAWRKYGQKPIKGSPYPR YYRCS+SKGCLARKQVER+ +DP
Sbjct: 117 QHKKVCH-VAAEALNSDVWAWRKYGQKPIKGSPYPRGYYRCSTSKGCLARKQVERNRSDP 175

Query: 174 GVFIITYGAEHNHGHPTRRSALAGSTRSKLASMSKAQGPA------QNKPLEPASEASAE 227
            +FI+TY AEHNH  PT R++LAGSTR K +     + P        + P+  A E    
Sbjct: 176 KMFIVTYTAEHNHPAPTHRNSLAGSTRQKPSDQPTTKSPTTTIGTYSSSPVTSADEFVLP 235

Query: 228 LGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFPSLEDLEGFLLDQFPDHNINM 287
           + DL              LDG E  L + D   SD+      + LE F        N   
Sbjct: 236 VEDLAVGD----------LDGDEDLLSLSDTVVSDDF----FDGLEEFAAGDSFSGNSAP 281

Query: 288 SADDNSWFIDESVTLNGGL 306
           ++ D SW ++ + T  GG+
Sbjct: 282 ASFDLSWVVNSAATATGGI 300

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064065|ref|XP_002301374.1| predicted protein [Populus trichocarpa] gi|222843100|gb|EEE80647.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 159/305 (52%), Gaps = 42/305 (13%)

Query: 1   MDWDLQAIVRGCSTEASIDSVMDKPQSYNFSPSSLQQDVRFKFPDVSETTTILDELEELY 60
           +DWDL A+VRGC+T  S  +      + N + +    D         ET  ++ EL+ELY
Sbjct: 4   IDWDLHAVVRGCTTSTSTSTTATTTINSNSNRNGTTSDPF-------ETRNVIGELDELY 56

Query: 61  KPFYPQT--ILTSTSISAPTEVNKKPKKLRKQQRKLSD-----------------SASNT 101
           KPF+P+T  +L S     P           K  +                     S+ N+
Sbjct: 57  KPFFPKTQPLLYSPQACTPISSFSSFASFNKDLQTQPKQQQKKSQPKQSLAGSVTSSGNS 116

Query: 102 DHPAAQPKGGKNQHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCL 161
             P ++ +  KNQ K+V Q V A+ L+ D WAWRKYGQKPIKGSPYPR YYRCSSSKGCL
Sbjct: 117 HTPRSKRR--KNQLKKVCQ-VPAEALSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCL 173

Query: 162 ARKQVERSSADPGVFIITYGAEHNHGHPTRRSALAGSTRSKLASMSKAQGPAQNKPLEPA 221
           ARKQVER+ +DPG+FI+TY AEHNH  PT R++LAGSTR K ++         NKP  PA
Sbjct: 174 ARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKTSTPQAGTSNDSNKPSSPA 233

Query: 222 SEASAELGDLVYQGNIKKEDENVFLDGQEIELV-MPDLTFSDELMFPSLEDL----EGFL 276
               +     +       EDE +  +  E EL    ++  SD+  F  LE+      GF 
Sbjct: 234 QPTCSSPATSL-------EDELLVQNDDEDELAGFSEIAVSDDF-FAGLEEFVVPATGFF 285

Query: 277 LDQFP 281
            D FP
Sbjct: 286 SDHFP 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686233|ref|NP_194086.3| putative WRKY transcription factor 29 [Arabidopsis thaliana] gi|29839684|sp|Q9SUS1.1|WRK29_ARATH RecName: Full=Probable WRKY transcription factor 29; AltName: Full=WRKY DNA-binding protein 29 gi|17064160|gb|AAL35287.1|AF442394_1 WRKY transcription factor 29 [Arabidopsis thaliana] gi|4454024|emb|CAA23021.1| putative protein [Arabidopsis thaliana] gi|7269203|emb|CAB79310.1| putative protein [Arabidopsis thaliana] gi|109946497|gb|ABG48427.1| At4g23550 [Arabidopsis thaliana] gi|225898803|dbj|BAH30532.1| hypothetical protein [Arabidopsis thaliana] gi|332659374|gb|AEE84774.1| putative WRKY transcription factor 29 [Arabidopsis thaliana]

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/286 (44%), Positives = 161/286 (56%), Gaps = 27/286 (9%)

Query: 4   DLQAIVRGCSTEASIDSVMDKPQSYNFSPSSLQQDVRFKFPDVSETTTILDELEELYKPF 63
           DL+AIVRG S   S D+   +  S  FSPS         F +    T+ LDEL ELYKPF
Sbjct: 5   DLEAIVRGYS--GSGDAFSGE-SSGTFSPSFCLPMETSSFYEPEMETSGLDELGELYKPF 61

Query: 64  YP---QTILTSTSISAPTEVNKKPKKLRKQQRK---LSDSASNTDH----PAAQPKGGKN 113
           YP   QTILTS S+S P   + KP +  K+QR    L  + S  DH     +   K  KN
Sbjct: 62  YPFSTQTILTS-SVSLPE--DSKPFRDDKKQRSHGCLLSNGSRADHIRISESKSKKSKKN 118

Query: 114 QHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADP 173
           Q KRVV++V  + L  D WAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVER+  +P
Sbjct: 119 QQKRVVEQVKEENLLSDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERNPQNP 178

Query: 174 GVFIITYGAEHNHGHPTRRSALAGSTRSKLA----SMSK------AQGPAQNKPLEPASE 223
             F ITY  EHNH  PTRR++LAGSTR+K +    +++K         P  N  +  A E
Sbjct: 179 EKFTITYTNEHNHELPTRRNSLAGSTRAKTSQPKPTLTKKSEKEVVSSPTSNPMIPSADE 238

Query: 224 ASAELGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFPSL 269
           +S  + ++        +     ++G+ +   +P    S    FPS 
Sbjct: 239 SSVAVQEMSVAETSTHQAAGA-IEGRRLSNGLPSDLMSGSGTFPSF 283

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
TAIR|locus:2125043	298	WRKY22 [Arabidopsis thaliana (	0.944	0.969	0.353	2.8e-34
TAIR|locus:2176907	348	WRKY27 "WRKY DNA-binding prote	0.486	0.428	0.424	1e-32
TAIR|locus:2128389	304	WRKY29 [Arabidopsis thaliana (	0.885	0.891	0.352	2e-31
TAIR|locus:2044777	427	WRKY35 "WRKY DNA-binding prote	0.382	0.274	0.447	7.8e-22
TAIR|locus:2155347	1372	TTR1 "TOLERANT TO TOBACCO RING	0.503	0.112	0.406	3.9e-21
TAIR|locus:2204549	430	WRKY14 "WRKY DNA-binding prote	0.343	0.244	0.486	5e-21
TAIR|locus:2029919	259	WRKY65 "WRKY DNA-binding prote	0.284	0.335	0.463	3.3e-15
TAIR|locus:2158485	1288	RRS1 "RESISTANT TO RALSTONIA S	0.339	0.080	0.416	1.7e-12
TAIR|locus:2125239	325	WRKY11 "WRKY DNA-binding prote	0.294	0.276	0.382	1.8e-10
TAIR|locus:2064377	380	WRKY21 "WRKY DNA-binding prote	0.287	0.231	0.417	6.5e-10

TAIR|locus:2125043 WRKY22 [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 110/311 (35%), Positives = 150/311 (48%)

Query:     2 DWDLQAIVRGCSTEASIDSVMDKPQSYNFSPSSLQQDVRFKFPDVSXXXXXXXXXXXXYK 61
             DWDL A+VRGCS  +S  +       Y+   SS    + F     S            Y 
Sbjct:     4 DWDLHAVVRGCSAVSSSATTT----VYSPGVSSHTNPI-FTVGRQSNAVSFGEIRDL-YT 57

Query:    62 PFYPQTILTSTS-ISAPTEVNXXXXXXXXXXXXXSDSASNTDHPA----AQPKGGKNQHK 116
             PF  +++++S S I+ P E               S S S T  P+    ++ K  K QHK
Sbjct:    58 PFTQESVVSSFSCINYPEEPRKPQNQKRPLSLSAS-SGSVTSKPSGSNTSRSKRRKIQHK 116

Query:   117 RVVQRVTADCLACDKWAWRKYGQKPIKGXXXXXXXXXXXXXKGCLARKQVERSSADPGVF 176
             +V   V A+ L  D WAWRKYGQKPIKG             KGCLARKQVER+ +DP +F
Sbjct:   117 KVCH-VAAEALNSDVWAWRKYGQKPIKGSPYPRGYYRCSTSKGCLARKQVERNRSDPKMF 175

Query:   177 IITYGAEHNHGHPTRRSALAGSTRSKLASMSKAQGPAQNKPLEPASEA-SAELGDLVYQG 235
             I+TY AEHNH  PT R++LAGSTR K +    ++ P        +S   SA+   L  + 
Sbjct:   176 IVTYTAEHNHPAPTHRNSLAGSTRQKPSDQQTSKSPTTTIATYSSSPVTSADEFVLPVED 235

Query:   236 NIKKEDENVFLDGQEIELVMPDLTFSDELMFPSLEDLEGFLLDQFPDHNINMSADDNSWF 295
             ++   D    LDG+E  L + D   SD+  F  LE+      D F  ++   S D  SW 
Sbjct:   236 HLAVGD----LDGEEDLLSLSDTVVSDDF-FDGLEEFAAG--DSFSGNSAPASFD-LSWV 287

Query:   296 IDESVTLNGGL 306
             ++ + T  GG+
Sbjct:   288 VNSAATTTGGI 298

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010150 "leaf senescence" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2176907 WRKY27 "WRKY DNA-binding protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
 Identities = 65/153 (42%), Positives = 84/153 (54%)

Query:   104 PAAQPKGGKNQHKRVVQRVTADCLACDKWAWRKYGQKPIKGXXXXXXXXXXXXXKGCLAR 163
             P  + +  KNQ KR +  VT + L+ D WAWRKYGQKPIKG             KGCLAR
Sbjct:   140 PPLRSRKRKNQQKRTICHVTQENLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCLAR 199

Query:   164 KQVERSSADPGVFIITYGAEHNHGHPTRRSALAGSTRSKLASMSKAQGPAQNKPLEPASE 223
             KQVERS+ DP +FI+TY  EH H  PT R++LAGSTR+K   ++    P    PL    +
Sbjct:   200 KQVERSNLDPNIFIVTYTGEHTHPRPTHRNSLAGSTRNKSQPVNPVPKP-DTSPLSDTVK 258

Query:   224 ASAELGDLV-YQGNIKKEDENVFLD--GQEIEL 253
                 L      +GN   ++ N   D  GQE+ +
Sbjct:   259 EEIHLSPTTPLKGNDDVQETNGDEDMVGQEVNM 291

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0007263 "nitric oxide mediated signal transduction" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2128389 WRKY29 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 104/295 (35%), Positives = 136/295 (46%)

Query:     4 DLQAIVRGCSTEASIDSVMDKPQSYNFSPSSLQQDVRFKFPDVSXXXXXXXXXXXXYKPF 63
             DL+AIVRG S   S D+   +  S  FSPS         F +              YKPF
Sbjct:     5 DLEAIVRGYS--GSGDAFSGE-SSGTFSPSFCLPMETSSFYEPEMETSGLDELGELYKPF 61

Query:    64 YP---QTILTSTSISAPTEVNXXXXXXXXXXXX-XSDSASNTDH----PAAQPKGGKNQH 115
             YP   QTILTS S+S P +                  + S  DH     +   K  KNQ 
Sbjct:    62 YPFSTQTILTS-SVSLPEDSKPFRDDKKQRSHGCLLSNGSRADHIRISESKSKKSKKNQQ 120

Query:   116 KRVVQRVTADCLACDKWAWRKYGQKPIKGXXXXXXXXXXXXXKGCLARKQVERSSADPGV 175
             KRVV++V  + L  D WAWRKYGQKPIKG             KGCLARKQVER+  +P  
Sbjct:   121 KRVVEQVKEENLLSDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERNPQNPEK 180

Query:   176 FIITYGAEHNHGHPTRRSALAGSTRSKLA----SMSK------AQGPAQNKPLEPASEAS 225
             F ITY  EHNH  PTRR++LAGSTR+K +    +++K         P  N  +  A E+S
Sbjct:   181 FTITYTNEHNHELPTRRNSLAGSTRAKTSQPKPTLTKKSEKEVVSSPTSNPMIPSADESS 240

Query:   226 AELGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFPSLE-DLEGFLLDQ 279
               + ++        +     ++G+ +   +P    S    FPS   D +  L  Q
Sbjct:   241 VAVQEMSVAETSTHQAAGA-IEGRRLSNGLPSDLMSGSGTFPSFTGDFDELLNSQ 294

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2044777 WRKY35 "WRKY DNA-binding protein 35" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 7.8e-22, P = 7.8e-22
 Identities = 55/123 (44%), Positives = 71/123 (57%)

Query:   121 RVTADCLACDKWAWRKYGQKPIKGXXXXXXXXXXXXXKGCLARKQVERSSADPGVFIITY 180
             R + + +  D WAWRKYGQKPIKG             KGC ARKQVERS  DP + +ITY
Sbjct:   207 RSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITY 266

Query:   181 GAEHNHGHPTRRSALAGSTRSKLASMSKAQGPAQNKPLEPASEASAELGDLVYQGNIKKE 240
              +EHNH  PT+R+ALAGSTRS   S S +  P+       A+ + +     V+Q N  K+
Sbjct:   267 TSEHNHPWPTQRNALAGSTRS---SSSSSLNPSSKSSTAAATTSPSSR---VFQNNSSKD 320

Query:   241 DEN 243
             + N
Sbjct:   321 EPN 323

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2155347 TTR1 "TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 65/160 (40%), Positives = 80/160 (50%)

Query:   113 NQHKRVVQRVTADCLACDKWAWRKYGQKPIKGXXXXXXXXXXXXXKGCLARKQVERSSAD 172
             N+ KRVV  V     + D W WRKYGQKPIK              KGC ARKQVERS  D
Sbjct:  1164 NKEKRVVCVVDRGSRSSDLWVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTD 1223

Query:   173 PGVFIITYGAEHNHGHPTRRSALAGSTRSKLASMSKAQGPA-----QNKPLEPASEASAE 227
             P V +ITY +EHNH  PT R+ LAGSTRS  +  S     A     Q+K     S   + 
Sbjct:  1224 PNVSVITYISEHNHPFPTLRNTLAGSTRSSSSKCSDVTTSASSTVSQDKEGPDKSHLPSS 1283

Query:   228 LGDLVYQGNIKKEDENVFLDGQEIELVMPDLTFSDELMFP 267
                  Y   + KE++    D  E ++ + + TF  EL FP
Sbjct:  1284 PASPPYAAMVVKEEDMEQWDNMEFDVDVEEDTFIPEL-FP 1322

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009615 "response to virus" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:2204549 WRKY14 "WRKY DNA-binding protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 5.0e-21, P = 5.0e-21
 Identities = 53/109 (48%), Positives = 66/109 (60%)

Query:   121 RVTADCLACDKWAWRKYGQKPIKGXXXXXXXXXXXXXKGCLARKQVERSSADPGVFIITY 180
             R + + +  D WAWRKYGQKPIKG             KGC ARKQVERS  DP + +ITY
Sbjct:   209 RSSGEVVPSDLWAWRKYGQKPIKGSPFPRGYYRCSSSKGCSARKQVERSRTDPNMLVITY 268

Query:   181 GAEHNHGHPTRRSALAGSTRSKLASMSKAQGPAQNKPLEPASEASAELG 229
              +EHNH  P +R+ALAGSTRS   S S +  P  +KP   A+  S+ +G
Sbjct:   269 TSEHNHPWPIQRNALAGSTRS---STSSSSNPNPSKP-STANVNSSSIG 313

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2029919 WRKY65 "WRKY DNA-binding protein 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 44/95 (46%), Positives = 53/95 (55%)

Query:   130 DKWAWRKYGQKPIKGXXXXXXXXXXXXXKGCLARKQVERSSADPGVFIITYGAEHNHGHP 189
             D WAWRKYGQKPIKG             KGC ARKQVERS  DP + +ITY +EHNH  P
Sbjct:    75 DSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHPWP 134

Query:   190 TRRSALAGSTRSKLASMSKAQGPAQNKP-LEPASE 223
                  L  STR+      K +   + +P +EP +E
Sbjct:   135 -----LTSSTRN--GPKPKPEPKPEPEPEVEPEAE 162

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2158485 RRS1 "RESISTANT TO RALSTONIA SOLANACEARUM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 45/108 (41%), Positives = 57/108 (52%)

Query:   101 TDHPAAQPKGGKNQHKRVVQRVTADCLACDKWAWRKYGQKPIKGXXXXXXXX--XXXXXK 158
             +D P  + K  +++ K+VV     D    D W WRKYGQK I G                
Sbjct:  1182 SDVPKKKKKHSESRVKKVVSIPAID--EGDLWTWRKYGQKDILGSRFPRGYYRCAYKFTH 1239

Query:   159 GCLARKQVERSSADPGVFIITYGAEHNHGHPTRRSALAGSTRSKLASM 206
             GC A KQV+RS  D  +  ITY +EHNH  PT+R ALA STRS  +S+
Sbjct:  1240 GCKATKQVQRSETDSNMLAITYLSEHNHPRPTKRKALADSTRSTSSSI 1287

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP;TAS

GO:0003677 "DNA binding" evidence=IDA

GO:0008219 "cell death" evidence=IMP

TAIR|locus:2125239 WRKY11 "WRKY DNA-binding protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 36/94 (38%), Positives = 51/94 (54%)

Query:   109 KGGKNQHKRVVQ--RVTADC--LACDKWAWRKYGQKPIKGXXXXXXXXXXXXXKGCLARK 164
             K  KN+ KR V+   ++A    +  D+++WRKYGQKPIKG             +GC ARK
Sbjct:   222 KSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARK 281

Query:   165 QVERSSADPGVFIITYGAEHNHGHPTRRSALAGS 198
              VER+  DP + I+TY  EH H     +  ++ S
Sbjct:   282 HVERALDDPAMLIVTYEGEHRHNQSAMQENISSS 315

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2064377 WRKY21 "WRKY DNA-binding protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 38/91 (41%), Positives = 49/91 (53%)

Query:    98 ASNTDHPAAQPKGGKNQHKRV--VQRVTADCLACDKWAWRKYGQKPIKGXXXXXXXXXXX 155
             +S+  H A + K    +  RV  +    AD +  D ++WRKYGQKPIKG           
Sbjct:   281 SSSRCHCAKKRKHRVRRSIRVPAISNKVAD-IPPDDYSWRKYGQKPIKGSPYPRGYYKCS 339

Query:   156 XXKGCLARKQVERSSADPGVFIITYGAEHNH 186
               +GC ARK VER   DP + I+TY AEHNH
Sbjct:   340 SMRGCPARKHVERCLEDPAMLIVTYEAEHNH 370

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04609	WRK22_ARATH	No assigned EC number	0.3968	0.9150	0.9395	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0018034701	hypothetical protein (330 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_IX0462	hypothetical protein (371 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	306
smart00774	59	smart00774, WRKY, DNA binding domain	2e-35
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	3e-32

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  121 bits (307), Expect = 2e-35
 Identities = 37/57 (64%), Positives = 44/57 (77%)

Query: 130 DKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNH 186
           D + WRKYGQK IKGSPYPRSYYRC+ ++GC A+KQV+RS  DP V  +TY  EH H
Sbjct: 3   DGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  113 bits (285), Expect = 3e-32
 Identities = 39/57 (68%), Positives = 45/57 (78%), Gaps = 1/57 (1%)

Query: 130 DKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNH 186
           D + WRKYGQKP+KGSP+PRSYYRC+S  GC  +KQVERSS DP +  ITY  EHNH
Sbjct: 3   DGYNWRKYGQKPVKGSPFPRSYYRCTSP-GCPVKKQVERSSDDPQIVEITYEGEHNH 58

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	94.34
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	93.25

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=7.6e-33  Score=207.14  Aligned_cols=60  Identities=63%  Similarity=1.185  Sum_probs=52.1

Q ss_pred             CCCCccccccCcccCCCCCCCCCceecCCCCCCccccceeeccCCCCeEEEEeCcCCCCCC
Q 021896          128 ACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNHGH  188 (306)
Q Consensus       128 ~~DGY~WRKYGQK~IKGs~~PRsYYRCs~~~gC~AkK~Vers~~D~~~~~vtY~GeHnH~~  188 (306)
                      ++|||+|||||||.|+|+++||+||||++ .+|+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~-~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTH-PGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEEC-TTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccc-cChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            37999999999999999999999999998 6999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=3e-32  Score=204.27  Aligned_cols=58  Identities=64%  Similarity=1.176  Sum_probs=56.5

Q ss_pred             CCCccccccCcccCCCCCCCCCceecCCCCCCccccceeeccCCCCeEEEEeCcCCCC
Q 021896          129 CDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNH  186 (306)
Q Consensus       129 ~DGY~WRKYGQK~IKGs~~PRsYYRCs~~~gC~AkK~Vers~~D~~~~~vtY~GeHnH  186 (306)
                      +|||+|||||||.|+|+++||+||||++.++|+|+|+|||+.+|+.+++|||+|+|||
T Consensus         2 ~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        2 DDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            7999999999999999999999999998689999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.34  E-value=0.015  Score=41.02  Aligned_cols=49  Identities=29%  Similarity=0.592  Sum_probs=25.2

Q ss_pred             CCCCccccccCcccCCCCCCCCCceecCCC--CCCccccceeeccCCCCeEEEEeCcCCCC
Q 021896          128 ACDKWAWRKYGQKPIKGSPYPRSYYRCSSS--KGCLARKQVERSSADPGVFIITYGAEHNH  186 (306)
Q Consensus       128 ~~DGY~WRKYGQK~IKGs~~PRsYYRCs~~--~gC~AkK~Vers~~D~~~~~vtY~GeHnH  186 (306)
                      .-|||.-+++...      ..+.|+||+..  .+|+|+-.+.  . +... ++...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~-~~~~-~~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--A-GDGR-VVRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE-----TTE-EEE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--C-CCCE-EEECCCccCC
Confidence            3589888877655      34679999962  3799988777  2 2333 3444599999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=93.25  E-value=0.076  Score=40.73  Aligned_cols=30  Identities=37%  Similarity=0.531  Sum_probs=26.3

Q ss_pred             CCCccccceeeccCCCCeEEEEeCcCCCCCC
Q 021896          158 KGCLARKQVERSSADPGVFIITYGAEHNHGH  188 (306)
Q Consensus       158 ~gC~AkK~Vers~~D~~~~~vtY~GeHnH~~  188 (306)
                      -+|+|+=.|.+.. ++...++.+..+|||+.
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCC
Confidence            4899999998877 78888899999999985

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	306
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		8e-07
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		3e-06

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 119 VQRVTADCLACDKWAWRKYGQKPIKGXXXXXXXXXXXXXKGCLARKQVERSSADPGVFII 178
           VQ  +   L  D + WRKYGQK +KG              GC  RK VER++ DP   + 
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVT 66
Query: 179 TYGAEHNHGHP 189
           TY  +HNH  P
Sbjct: 67  TYEGKHNHDLP 77

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 130 DKWAWRKYGQKPIKGXXXXXXXXXXXXXKGCLARKQVERSSADPGVFIITYGAEHNHGHP 189
           D + WRKYGQK +KG              GC  +K VERSS D  + I TY  +H+H  P
Sbjct: 16  DGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	306
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	6e-32
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	2e-31
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  112 bits (283), Expect = 6e-32
 Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 117 RVVQRVTADC-LACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGV 175
           R+V        +  D + WRKYGQK +KGSPYPRSYYRCSS  GC  +K VERSS D  +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP-GCPVKKHVERSSHDTKL 60

Query: 176 FIITYGAEHNHGHPT 190
            I TY  +H+H  P 
Sbjct: 61  LITTYEGKHDHDMPP 75

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  111 bits (279), Expect = 2e-31
 Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 114 QHKRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADP 173
                VQ  +   L  D + WRKYGQK +KG+PYPRSYY+C++  GC  RK VER++ DP
Sbjct: 3   SGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDP 61

Query: 174 GVFIITYGAEHNHGHP 189
              + TY  +HNH  P
Sbjct: 62  KAVVTTYEGKHNHDLP 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 30/298 (10%), Positives = 80/298 (26%), Gaps = 86/298 (28%)

Query: 36  QQDVRFKFPDVSETTTILDELEELYKPF-------YPQTILTSTSISAPTEVNKKPKKLR 88
           +   ++K  D+     +    +     F        P++IL+   I     +      + 
Sbjct: 13  EHQYQYK--DI-----LSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIMSKDAV- 61

Query: 89  KQQRKLSDSASNTDHPAAQPKGGKNQHKRVVQRVTADCLACD-KWAWRKYGQKPIKGSPY 147
               +L  +               ++ + +VQ+   + L  + K+       +  + S  
Sbjct: 62  SGTLRLFWTL-------------LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 148 PRSYY----RCSSSKGCLARKQVER-----------SSADPGVFIITYGAEHNHGHPTRR 192
            R Y     R  +     A+  V R               P   ++  G           
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG----------- 157

Query: 193 SALAGSTRSKLASMSKAQGPAQNKPLEPASEASAELGDLVY---QGNIKKEDENVFLDGQ 249
             + GS ++ +A          +  ++        +   ++     N    +    L+  
Sbjct: 158 --VLGSGKTWVALDV-----CLSYKVQCK------MDFKIFWLNLKNCNSPET--VLEML 202

Query: 250 E--IELVMPDLTFSDELMFP---SLEDLEGFLLDQFPDHNINMS---ADD--NSWFID 297
           +  +  + P+ T   +        +  ++  L                 +  N+   +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	306
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	84.32

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=5.9e-35  Score=227.42  Aligned_cols=74  Identities=54%  Similarity=0.958  Sum_probs=68.3

Q ss_pred             ceEEEeecccCCCCCCccccccCcccCCCCCCCCCceecCCCCCCccccceeeccCCCCeEEEEeCcCCCCCCCC
Q 021896          116 KRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNHGHPT  190 (306)
Q Consensus       116 k~vv~~v~~~~l~~DGY~WRKYGQK~IKGs~~PRsYYRCs~~~gC~AkK~Vers~~D~~~~~vtY~GeHnH~~P~  190 (306)
                      +.++++....++.+|||+|||||||.|||++|||+||||++ +||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            34666666678889999999999999999999999999997 899999999999999999999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=1.2e-34  Score=226.76  Aligned_cols=73  Identities=49%  Similarity=0.939  Sum_probs=65.6

Q ss_pred             eEEEeecccCCCCCCccccccCcccCCCCCCCCCceecCCCCCCccccceeeccCCCCeEEEEeCcCCCCCCCC
Q 021896          117 RVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNHGHPT  190 (306)
Q Consensus       117 ~vv~~v~~~~l~~DGY~WRKYGQK~IKGs~~PRsYYRCs~~~gC~AkK~Vers~~D~~~~~vtY~GeHnH~~P~  190 (306)
                      .++++....++.+|||+|||||||.|||++|||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         6 ~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            6 SGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             --CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             EEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            3455555567789999999999999999999999999998 899999999999999999999999999999884

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=84.32  E-value=0.35  Score=36.71  Aligned_cols=50  Identities=22%  Similarity=0.387  Sum_probs=31.9

Q ss_pred             CCCCCccccccCcccCCCCCCCCCceecCC--CCCCccccceeeccCCCCeEEEEeCcCCCCCCC
Q 021896          127 LACDKWAWRKYGQKPIKGSPYPRSYYRCSS--SKGCLARKQVERSSADPGVFIITYGAEHNHGHP  189 (306)
Q Consensus       127 l~~DGY~WRKYGQK~IKGs~~PRsYYRCs~--~~gC~AkK~Vers~~D~~~~~vtY~GeHnH~~P  189 (306)
                      |.-|||.-++--+.      ..+.|.+|+.  ..+|.|+-....   + .   +.-.+.|||++.
T Consensus        23 Lv~~Gy~Y~~~~~~------~~~~yWrC~~~~~~kCrARi~T~~---~-~---~~~~~~HnH~p~   74 (87)
T 2rpr_A           23 LVHESFLYRKEKAA------GEKVYWMCRDQARLGCRSRAITQG---H-R---IMVMRSHCHQPD   74 (87)
T ss_dssp             EEETTEEEEEEEEC------SSCEEEEEGGGTTSCCCCEEEEET---T-E---EEECSCCSSCCC
T ss_pred             EEECCEEEEeeecC------CCcEEEEecCCCCCCCCEEEEEcC---C-C---EECCCCcCCCCc
Confidence            44589888753221      2367999995  248999854432   1 1   235688999754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	306
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	8e-25

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 93.0 bits (231), Expect = 8e-25
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 119 VQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFII 178
           VQ  +   L  D + WRKYGQK +KG+PYPRSYY+C ++ GC  RK VER++ DP   + 
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKC-TTPGCGVRKHVERAATDPKAVVT 59

Query: 179 TYGAEHNHGHP 189
           TY  +HNH  P
Sbjct: 60  TYEGKHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	306
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.6e-35  Score=225.23  Aligned_cols=68  Identities=50%  Similarity=0.996  Sum_probs=63.4

Q ss_pred             ecccCCCCCCccccccCcccCCCCCCCCCceecCCCCCCccccceeeccCCCCeEEEEeCcCCCCCCCC
Q 021896          122 VTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNHGHPT  190 (306)
Q Consensus       122 v~~~~l~~DGY~WRKYGQK~IKGs~~PRsYYRCs~~~gC~AkK~Vers~~D~~~~~vtY~GeHnH~~P~  190 (306)
                      +...++++|||+|||||||.|||++|||+||||++ .||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         4 ~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           4 TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccccccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            34456789999999999999999999999999997 899999999999999999999999999999884