Citrus Sinensis ID: 021919
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 305 | ||||||
| 147777380 | 391 | hypothetical protein VITISV_001852 [Viti | 1.0 | 0.780 | 0.704 | 1e-128 | |
| 296090290 | 391 | unnamed protein product [Vitis vinifera] | 1.0 | 0.780 | 0.701 | 1e-128 | |
| 225446257 | 388 | PREDICTED: oxysterol-binding protein-rel | 1.0 | 0.786 | 0.701 | 1e-127 | |
| 356530324 | 387 | PREDICTED: oxysterol-binding protein-rel | 0.986 | 0.777 | 0.675 | 1e-121 | |
| 356558308 | 407 | PREDICTED: oxysterol-binding protein-rel | 0.993 | 0.744 | 0.679 | 1e-121 | |
| 356556222 | 383 | PREDICTED: oxysterol-binding protein-rel | 0.986 | 0.785 | 0.678 | 1e-121 | |
| 356532678 | 408 | PREDICTED: oxysterol-binding protein-rel | 0.990 | 0.740 | 0.675 | 1e-121 | |
| 224142715 | 384 | predicted protein [Populus trichocarpa] | 0.993 | 0.789 | 0.685 | 1e-120 | |
| 87162846 | 387 | Oxysterol-binding protein [Medicago trun | 0.990 | 0.780 | 0.656 | 1e-118 | |
| 357449541 | 374 | Oxysterol-binding protein-related protei | 0.990 | 0.807 | 0.656 | 1e-118 |
| >gi|147777380|emb|CAN67197.1| hypothetical protein VITISV_001852 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 215/305 (70%), Positives = 254/305 (83%)
Query: 1 MLSKCNSLESPLERFTAVVAWSISMNRPPVFGSAPYNPVLGETHHVSRGNLNILLEQVSH 60
MLS+C+ ES LERF +VVAWSIS RP +FG AP+NP+LGETHHVS+G LN+LLEQVSH
Sbjct: 87 MLSRCSKAESSLERFASVVAWSISTTRPLIFGVAPFNPILGETHHVSKGTLNVLLEQVSH 146
Query: 61 HPPVTALHATDEKENIEIIWCQHPAPKFYGASVEAEVHGRRQLKLLNHNETYEMNSPKLC 120
HPPV+ALHATDEKENIE+IWCQ+P PKFYGASVEAEVHG RQL+LL E YEMNSP+L
Sbjct: 147 HPPVSALHATDEKENIEMIWCQYPVPKFYGASVEAEVHGNRQLRLLKLGENYEMNSPRLL 206
Query: 121 IRFLPVPGADWVGNVKIKCYETGLEAELFYKANPFIALRRNHRAVKGKIYNSSSSKILYE 180
IRFLPV ADWVG V+I+C ETGLEAEL Y+ + F+ R N+R++KGKI+ SSSSK +YE
Sbjct: 207 IRFLPVSSADWVGTVRIRCRETGLEAELCYRGSSFLGRRSNYRSIKGKIFESSSSKTIYE 266
Query: 181 IDGHWDRTVSLKDVNNGKSTIIYNAKEVLTGLKAPIVKDLEEMWPSESAAVWSEVSQYIM 240
IDGHWDRTVS+KD+NNGK +IIYNAKE+L+GLK P VKD + +WPSESA VW EVSQ IM
Sbjct: 267 IDGHWDRTVSMKDINNGKLSIIYNAKEMLSGLKTPTVKDPKGVWPSESAVVWGEVSQGIM 326
Query: 241 RQDWEKASEAKKAVEEKQRKLLRERESAGETWVPKHFTVTCNKERGWDCSSIKKVVPPAP 300
+DWEKA AK A+EEK+R+ LRER+S GETWVPKHF + KE GWDC I+ +VPPAP
Sbjct: 327 NKDWEKAKAAKTAIEEKEREGLRERKSRGETWVPKHFKLFSGKEGGWDCLPIQDLVPPAP 386
Query: 301 IVVPL 305
I +PL
Sbjct: 387 IALPL 391
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090290|emb|CBI40109.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|225446257|ref|XP_002265474.1| PREDICTED: oxysterol-binding protein-related protein 4B-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356530324|ref|XP_003533732.1| PREDICTED: oxysterol-binding protein-related protein 4C-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356558308|ref|XP_003547449.1| PREDICTED: oxysterol-binding protein-related protein 4B-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356556222|ref|XP_003546425.1| PREDICTED: oxysterol-binding protein-related protein 4C-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356532678|ref|XP_003534898.1| PREDICTED: oxysterol-binding protein-related protein 4B-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224142715|ref|XP_002324700.1| predicted protein [Populus trichocarpa] gi|222866134|gb|EEF03265.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|87162846|gb|ABD28641.1| Oxysterol-binding protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|357449541|ref|XP_003595047.1| Oxysterol-binding protein-related protein [Medicago truncatula] gi|355484095|gb|AES65298.1| Oxysterol-binding protein-related protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 305 | ||||||
| TAIR|locus:2117522 | 383 | ORP4B "OSBP(oxysterol binding | 0.947 | 0.754 | 0.534 | 1.7e-82 | |
| TAIR|locus:2117532 | 386 | ORP4A "OSBP(oxysterol binding | 0.947 | 0.748 | 0.520 | 1.8e-80 | |
| TAIR|locus:2165575 | 379 | ORP4C "OSBP(oxysterol binding | 0.944 | 0.759 | 0.505 | 1.4e-78 | |
| CGD|CAL0002452 | 433 | OBPA [Candida albicans (taxid: | 0.918 | 0.646 | 0.309 | 2.1e-29 | |
| UNIPROTKB|Q9UW25 | 433 | OBPA "Oxysterol-binding protei | 0.918 | 0.646 | 0.309 | 2.1e-29 | |
| MGI|MGI:1930265 | 874 | Osbpl5 "oxysterol binding prot | 0.786 | 0.274 | 0.318 | 8e-26 | |
| UNIPROTKB|E1BSC6 | 799 | Gga.10561 "Oxysterol-binding p | 0.786 | 0.300 | 0.326 | 1.1e-25 | |
| UNIPROTKB|E1BC89 | 873 | OSBPL5 "Oxysterol-binding prot | 0.786 | 0.274 | 0.322 | 2.7e-25 | |
| UNIPROTKB|G3V8S8 | 898 | Osbpl5 "Oxysterol-binding prot | 0.901 | 0.306 | 0.292 | 2.9e-25 | |
| UNIPROTKB|F5GZ42 | 510 | OSBPL5 "Oxysterol-binding prot | 0.790 | 0.472 | 0.308 | 6.2e-25 |
| TAIR|locus:2117522 ORP4B "OSBP(oxysterol binding protein)-related protein 4B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
Identities = 156/292 (53%), Positives = 200/292 (68%)
Query: 1 MLSKCNSLESPLERFTAVVAWSISMNRPPVFGSAPYNPVLGETHHVSRGNLNILLEQVSH 60
+L +C+ + P+ER +VV W+IS RP VFG +PYN VLGETHHVS G++N++ EQV H
Sbjct: 79 LLGECSRRDLPIERLKSVVTWNISTLRPVVFGMSPYNSVLGETHHVSNGHINVIAEQVVH 138
Query: 61 HPPVTALHATDEKENIEIIWCQHPAPKFYGASVEAEVHGRRQLKLLNHNETYEMNSPKLC 120
HPPV+ALHAT E+ENI++ WCQ+ PKF G V+ EV G+R +KLLNH ETYEM+ P+L
Sbjct: 139 HPPVSALHATHEQENIDVTWCQYFTPKFRGTHVDVEVKGKRVMKLLNHIETYEMDQPRLI 198
Query: 121 IRFLPVPGADWVGNVKIKCYETGLEAELFYKANPFIALRR--NHRAVKGKIYNSSSSKIL 178
+RFLP PGA W G VKIKC ET LEAEL ++ FI R N+R++KGKI+ SSS L
Sbjct: 199 MRFLPAPGAYWAGKVKIKCPETDLEAELHLISDSFIERFRGNNNRSIKGKIFESSSGNQL 258
Query: 179 YEIDGHWDRTVSLKDVNNGKSTIIYNAKEVLTGLKAPIVKDLEEMWPSESAAVWSEVSQY 238
Y I GHWDRTV K++ G+ +IYNAKE +TGLK P VK+LEE+ SES VWSEVS+
Sbjct: 259 YNIFGHWDRTVMAKNIKTGELEVIYNAKENITGLKPPTVKNLEEVTESESTMVWSEVSEG 318
Query: 239 IMRQDWXXXXXXXXXXXXXXXXXXXXXXSAGETWVPKHFTVTCNKERGWDCS 290
I+++DW ++GE+WVPKHF V + WDCS
Sbjct: 319 ILKKDWERAREAKIVVEEKQRASLKQREASGESWVPKHFLVV-KDGKDWDCS 369
|
|
| TAIR|locus:2117532 ORP4A "OSBP(oxysterol binding protein)-related protein 4A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2165575 ORP4C "OSBP(oxysterol binding protein)-related protein 4C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0002452 OBPA [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9UW25 OBPA "Oxysterol-binding protein-like protein OBPa" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1930265 Osbpl5 "oxysterol binding protein-like 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BSC6 Gga.10561 "Oxysterol-binding protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BC89 OSBPL5 "Oxysterol-binding protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G3V8S8 Osbpl5 "Oxysterol-binding protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F5GZ42 OSBPL5 "Oxysterol-binding protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00001513001 | SubName- Full=Chromosome chr11 scaffold_118, whole genome shotgun sequence; (391 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 305 | |||
| pfam01237 | 335 | pfam01237, Oxysterol_BP, Oxysterol-binding protein | 3e-61 |
| >gnl|CDD|216381 pfam01237, Oxysterol_BP, Oxysterol-binding protein | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 3e-61
Identities = 91/314 (28%), Positives = 144/314 (45%), Gaps = 35/314 (11%)
Query: 1 MLSKCNSLESPLERFTAVVAWSISM--NRPPVFGSAPYNPVLGETHHVSRGNLNILL--E 56
+L K + PLER V A+++S + P+NP+LGET + R + E
Sbjct: 23 LLDKAAKEDDPLERMLYVAAFAVSTYSSTRKRRTKKPFNPLLGETFELVREDGGFRFISE 82
Query: 57 QVSHHPPVTALHATDEKENIEIIWCQHPAP--KFYGASVEAEVHGRRQLKLLNHNETYEM 114
QVSHHPP++A HA + AP KF+G S+E + G L L E Y
Sbjct: 83 QVSHHPPISAYHAESKG----WTLWGSSAPKSKFWGKSIEVKPEGHAHLTLKKTGEHYTW 138
Query: 115 NSPKLCIRFLPV--PGADWVGNVKIKCYETGLEAELFYKANPFIALRRNHRAVKGKIYNS 172
P I + P + G + IK TG +A + +K + + R+N V+GK+Y+
Sbjct: 139 TKPTTHIHNIIFGKPYVELYGEMYIKNSTTGYKAVIEFKKKGWFSGRKN--EVEGKVYDK 196
Query: 173 SSSKILYEIDGHWDRTVSLKDV--NNGKSTIIYNAKEV---------LTGLKAPIVKD-- 219
K+LY I G W+ ++ +K V + G+ +++ A + T P+ +
Sbjct: 197 KG-KVLYTISGKWNESLYIKKVKSSTGEKKLLWKANPLPPNSEKVYGFTKFAIPLNELTP 255
Query: 220 --LEEMWPSESAAVWSEVSQYIMRQDWEKASEAKKAVEEKQRKLLRERESAGETWVPKHF 277
EE+ P++S + + D+++A E K +EEKQR+ +ERE GE W P+ F
Sbjct: 256 ELKEELPPTDSR--LRPDQRALEEGDYDEAEEEKLRLEEKQRERRKEREEKGEEWKPRWF 313
Query: 278 TVT---CNKERGWD 288
E W
Sbjct: 314 VKVKDPLTGEEDWV 327
|
Length = 335 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 305 | |||
| PF01237 | 354 | Oxysterol_BP: Oxysterol-binding protein ; InterPro | 100.0 | |
| KOG2209 | 445 | consensus Oxysterol-binding protein [Signal transd | 100.0 | |
| KOG2210 | 392 | consensus Oxysterol-binding protein [Signal transd | 100.0 | |
| KOG1737 | 799 | consensus Oxysterol-binding protein [Lipid transpo | 100.0 |
| >PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-81 Score=591.96 Aligned_cols=283 Identities=33% Similarity=0.582 Sum_probs=227.0
Q ss_pred CcccccCCCCHHHHHHHHHHHhhhccCCCc-cccCCCCCCCCCeEEeec-CcEEEEeeecccCCceeEEEEEeCCCCEEE
Q 021919 1 MLSKCNSLESPLERFTAVVAWSISMNRPPV-FGSAPYNPVLGETHHVSR-GNLNILLEQVSHHPPVTALHATDEKENIEI 78 (305)
Q Consensus 1 lL~~Aa~~~dp~eRm~~V~~f~iS~~~~~~-~~~KPfNPiLGETf~~~~-~~~~~iaEQVSHHPPisA~~~~~~~~g~~~ 78 (305)
||++||.++||++||++|++|+||+++... ..+|||||||||||++.. ++++|+||||||||||||||+++ +||++
T Consensus 42 lL~~Aa~~~d~~eR~~~V~~f~~S~~~~~~~~~~KPfNPiLGETfe~~~~~~~~~~aEQVSHHPPisa~~~~~--~~~~~ 119 (354)
T PF01237_consen 42 LLDKAAEEDDPLERMLYVAAFALSSYSSTPGRTKKPFNPILGETFELVRPDGTRFIAEQVSHHPPISAFHAEG--RGWKF 119 (354)
T ss_dssp HHHGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE---TT-EE--TT-T-EEEEEEEEETTTTEEEEEEEE--TTEEE
T ss_pred HHhccCCCCCHHHHHHHHHHHHHhhhhhhcCCCCcCcCCCCcceeeeccCceEEEEEecccCCCCceEEEEEc--CCEEE
Confidence 689999999999999999999999977642 237999999999999876 88999999999999999999999 69999
Q ss_pred EEEEeeccEEEeeEEEEEEcceEEEEEcCCceeEEecCCceEEE--EeecceEEeeeeEEEEeCCCCceEEEEEeeCCcc
Q 021919 79 IWCQHPAPKFYGASVEAEVHGRRQLKLLNHNETYEMNSPKLCIR--FLPVPGADWVGNVKIKCYETGLEAELFYKANPFI 156 (305)
Q Consensus 79 ~g~~~~~~kF~G~sv~~~~~G~~~i~f~~~~e~y~~~~P~~~v~--i~G~~~~e~~G~~~i~~~~tg~~a~i~F~~~~~~ 156 (305)
+|++.++++|+||||++.+.|.++|+|.++||+|+|++|+++++ ++|++|+|+.|+|.|+|.+||++|+|+|+++|||
T Consensus 120 ~g~~~~~~kf~g~sv~~~~~G~~~i~f~~~~e~Y~~~~p~~~i~gi~~G~~~~e~~G~~~i~~~~tg~~~~i~f~~~~~f 199 (354)
T PF01237_consen 120 YGHIEPKSKFWGNSVEVNPIGKVTITFPDGGETYTWTKPTTYIRGIIFGKRYIEHVGKMVITCHKTGLKAEIEFKPKGWF 199 (354)
T ss_dssp EEEEEEEEEE-TT-EEEEEEEEEEEEET--TEEEEEE--SEEEESTTTTS-EEEEESEEEEEET-TS-EEEEEEETSSST
T ss_pred EEEEeeeEEEeceEEEEEECCcEEEEEcCCceEEEEecCcEEEeeeecccEEEEecCCEEEEcCCcceEEEEEEecCCcc
Confidence 99999999999999999999999999998899999999999999 8999999999999999999999999999999994
Q ss_pred cccCcceEEEEEEEeCCCCeeEEEEEEEecceEEEEEcC----CCceEEEEecccccCCC-----CCccccCC-------
Q 021919 157 ALRRNHRAVKGKIYNSSSSKILYEIDGHWDRTVSLKDVN----NGKSTIIYNAKEVLTGL-----KAPIVKDL------- 220 (305)
Q Consensus 157 ~~~~~~~~v~G~I~~~~~~~~~~~i~G~W~~~l~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~------- 220 (305)
+|+.+.|+|.|++. ++++++.|+|+||+.|.+.+.+ +++..++|++++.+... ++.++.++
T Consensus 200 --~~~~~~v~G~I~~~-~~~~~~~i~G~W~~~i~~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~ft~fa~~LNe~~~~~ 276 (354)
T PF01237_consen 200 --SGKSNEVEGKIYDS-KGKPIYKISGKWDEEIYIKDVKNDSDTGESKLLWDANPLPPNPKKYYGFTQFAIPLNELTPEL 276 (354)
T ss_dssp --SSSTTEEEEEEESS-GGG-SEEEEEETTSEEEEEETT----GGGEEEEEETTTS-SS--B----------G-------
T ss_pred --cccceeeEEEEEEc-cCceeEEeeeeeCCeEEEEeccccccCCCceEEEECCCCcccccceecccccccccccccccc
Confidence 57789999999995 6889999999999999999988 67889999998753211 22344455
Q ss_pred -CCCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeeeEEecCCC---CceEEc
Q 021919 221 -EEMWPSESAAVWSEVSQYIMRQDWEKASEAKKAVEEKQRKLLRERESAGETWVPKHFTVTCNKE---RGWDCS 290 (305)
Q Consensus 221 -~~~~ptdSr~rW~~d~~al~~gd~~~A~~eK~~lEe~QR~~rk~r~~~~~~w~P~~F~~~~~~~---~~W~~~ 290 (305)
+.++|||| ||++|++||++||+++|+++|.+|||+||++||+|+++|++|+||||+++.++. ..|.|+
T Consensus 277 ~~~~~ptDS--r~R~d~~al~~gd~~~A~~eK~~lEe~QR~~rk~R~~~~~~w~Pr~F~~~~d~~~~~~~w~~~ 348 (354)
T PF01237_consen 277 EEKLPPTDS--RWRPDQRALENGDIDKAQEEKKRLEEKQRADRKERKEKGEEWKPRWFEKVEDPSTEEEEWVYK 348 (354)
T ss_dssp G-GS-TTBH--HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHCT--GGGSSEEEEE-SSS--T-----
T ss_pred cccCCchhc--cchHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCeEEECCCCCCcccccccc
Confidence 37899999 677999999999999999999999999999999999999999999999997542 236554
|
These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A. |
| >KOG2209 consensus Oxysterol-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2210 consensus Oxysterol-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 305 | ||||
| 1zht_A | 438 | Structure Of Yeast Oxysterol Binding Protein Osh4 I | 3e-12 | ||
| 3spw_A | 436 | Structure Of Osh4pKES1P IN COMPLEX WITH PHOSPHATIDY | 4e-12 | ||
| 1zi7_A | 406 | Structure Of Truncated Yeast Oxysterol Binding Prot | 1e-10 |
| >pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In Complex With 7-Hydroxycholesterol Length = 438 | Back alignment and structure |
|
| >pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH PHOSPHATIDYLINOSITOL 4- Phosphate Length = 436 | Back alignment and structure |
| >pdb|1ZI7|A Chain A, Structure Of Truncated Yeast Oxysterol Binding Protein Osh4 Length = 406 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 305 | |||
| 1zhx_A | 438 | KES1 protein; oxysterol,sterol binding protein, li | 6e-76 |
| >1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A Length = 438 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 6e-76
Identities = 85/313 (27%), Positives = 124/313 (39%), Gaps = 33/313 (10%)
Query: 2 LSKCNSLESPLERFTAVVAWSIS--------MNRPPVFGSAPYNPVLGET--------HH 45
L L R AV W IS N P NP LGE H
Sbjct: 73 LIDPEVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEH 132
Query: 46 VSRGNLNILLEQVSHHPPVTALHATDEKENIEIIWCQHPAPKFYGASVEAEVHGRRQLKL 105
G +L EQVSHHPPVTA ++K +++ F S+ V L
Sbjct: 133 PEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTK-SLMLTVKQFGHTML 191
Query: 106 LNHNETYEMNSPKLCIRFL--PVPGADWVGNVKIKCYETGLEAELFYKANPFIALRRNHR 163
+E+Y + P L I + P + G I+ TGL + + + + ++N
Sbjct: 192 DIKDESYLVTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYFSGKKN-- 248
Query: 164 AVKGKIYNSS-----SSKILYEIDGHWDRTVSLKDVNN-GKSTIIYNAKEVLTGLKAPIV 217
+ K +IY S K LY I G W + + N +S + Y+A + V
Sbjct: 249 SFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEESRLFYDAARIPAEHL--NV 306
Query: 218 KDLEEMWPSESAAVWSEVSQYIMRQDWEKASEAKKAVEEKQRKLLRERESAGETWVPKHF 277
K LEE P ES W +V+ I D+ ++ K +EE QR+L +E E+ G +W + F
Sbjct: 307 KPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWF 366
Query: 278 T---VTCNKERGW 287
+ E G
Sbjct: 367 KDFDYSVTPEEGA 379
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 305 | |||
| 1zhx_A | 438 | KES1 protein; oxysterol,sterol binding protein, li | 100.0 |
| >1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-81 Score=602.44 Aligned_cols=265 Identities=29% Similarity=0.478 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHhhhccCCC--------ccccCCCCCCCCCeEEeec--------CcEEEEeeecccCCceeEEEEEeCCC
Q 021919 11 PLERFTAVVAWSISMNRPP--------VFGSAPYNPVLGETHHVSR--------GNLNILLEQVSHHPPVTALHATDEKE 74 (305)
Q Consensus 11 p~eRm~~V~~f~iS~~~~~--------~~~~KPfNPiLGETf~~~~--------~~~~~iaEQVSHHPPisA~~~~~~~~ 74 (305)
|++||++|++|+||+++.. ...+|||||||||||++.. +.++|||||||||||||||||++++.
T Consensus 82 p~eRm~~V~af~lS~~~~~y~~~~~~~~~~kKPfNPiLGETFe~~~~d~~~~~~g~~~~iaEQVSHHPPISA~~~e~~~~ 161 (438)
T 1zhx_A 82 ELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKN 161 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEEETTT
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccccccCcCCcccceEEEEecCccCCCCCcEEEEEEeccCCCCeeEEEEEcCCC
Confidence 9999999999999997531 2238999999999998762 34899999999999999999999999
Q ss_pred CEEEEEEEeeccEEEee-EEEEEEcceEEEEEcCCceeEEecCCceEEE--EeecceEEeeeeEEEEeCCCCceEEEEEe
Q 021919 75 NIEIIWCQHPAPKFYGA-SVEAEVHGRRQLKLLNHNETYEMNSPKLCIR--FLPVPGADWVGNVKIKCYETGLEAELFYK 151 (305)
Q Consensus 75 g~~~~g~~~~~~kF~G~-sv~~~~~G~~~i~f~~~~e~y~~~~P~~~v~--i~G~~~~e~~G~~~i~~~~tg~~a~i~F~ 151 (305)
||+++|++.++++|+|+ ||++.+.|.++|+|. ||+|+|++|+++++ |+|++|+|++|+|+|+| +||++|+|+|+
T Consensus 162 g~~~~g~~~~kskF~G~~Sv~v~~~G~~~l~l~--~E~Y~~t~P~~~v~gIi~G~~~vE~~G~~~I~~-~tg~~~~l~F~ 238 (438)
T 1zhx_A 162 KVKLQGYNQIKASFTKSLMLTVKQFGHTMLDIK--DESYLVTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFS 238 (438)
T ss_dssp TEEEEEEEEEEEEECTTCCEEEEEECCEEEEET--TEEEEEECCCEEEECTTTTCCEEEECSEEEEEE-TTSCEEEEEEE
T ss_pred CEEEEEEeeeEEEEcCceEEEEEcceEEEEEEC--CcEEEEecCcEEEEEEEecceeEecCCeEEEEc-CCCCEEEEEEc
Confidence 99999999999999999 999999999999997 89999999999999 89999999999999999 79999999999
Q ss_pred eCCcccccCcceEEEEEEEeCC-----CCeeEEEEEEEecceEEEEEcCCCc-eEEEEecccccCCCCCccccCCCCCCC
Q 021919 152 ANPFIALRRNHRAVKGKIYNSS-----SSKILYEIDGHWDRTVSLKDVNNGK-STIIYNAKEVLTGLKAPIVKDLEEMWP 225 (305)
Q Consensus 152 ~~~~~~~~~~~~~v~G~I~~~~-----~~~~~~~i~G~W~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p 225 (305)
++||| +|+.|.|+|+|++.+ +++++++|+|+|++.+++.+..+++ ..++|++.+.+. .+..+.|+++|+|
T Consensus 239 ~kg~f--~g~~n~v~G~I~~~~~~~~~~~~~l~~i~G~W~~~l~i~~~~~~~~~~~~~~~~~~~~--~~~~v~p~e~q~p 314 (438)
T 1zhx_A 239 GRGYF--SGKKNSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEESRLFYDAARIPA--EHLNVKPLEEQHP 314 (438)
T ss_dssp CSSSS--CSSSSEEEEEEESSTTGGGCGGGCSEEEEEETTSEEEEEETTCGGGCEEEEETTTSCC--CCCBCCCGGGCCT
T ss_pred CCCCc--CCCccEEEEEEEcCCcccCCCCcEEEEEEEEEcceEEEEeCCCCccceEEeccCCCCC--ccccCCChhhCCC
Confidence 99995 588899999999842 5678999999999999999887665 578999988532 3345678889999
Q ss_pred CCcccccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeeeEEecC
Q 021919 226 SESAAVWSEVSQYIMRQDWEKASEAKKAVEEKQRKLLRERESAGETWVPKHFTVTCN 282 (305)
Q Consensus 226 tdSr~rW~~d~~al~~gd~~~A~~eK~~lEe~QR~~rk~r~~~~~~w~P~~F~~~~~ 282 (305)
+|||++|++|++||++||++.|+++|.+|||+||++||+|+++|++|+||||+++.+
T Consensus 315 tdSR~~Wr~d~~ale~Gd~d~A~~eK~rLEe~QR~~rk~re~~g~~w~Pr~F~~~~~ 371 (438)
T 1zhx_A 315 LESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDY 371 (438)
T ss_dssp TBHHHHTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSEEEEEC
T ss_pred cccchhhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccceEEECCc
Confidence 999999999999999999999999999999999999999999999999999999976
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 305 | ||||
| d1zhxa1 | 433 | d.338.1.1 (A:2-434) Oxysterol-binding protein homo | 1e-63 |
| >d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4, KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 433 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Oxysterol-binding protein-like superfamily: Oxysterol-binding protein-like family: Oxysterol-binding protein domain: Oxysterol-binding protein homolog 4, KES1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 205 bits (522), Expect = 1e-63
Identities = 85/321 (26%), Positives = 126/321 (39%), Gaps = 35/321 (10%)
Query: 2 LSKCNSLESPLERFTAVVAWSIS--------MNRPPVFGSAPYNPVLGET--------HH 45
L L R AV W IS N P NP LGE H
Sbjct: 68 LIDPEVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEH 127
Query: 46 VSRGNLNILLEQVSHHPPVTALHATDEKENIEIIWCQHPAPKFYGASVEAEVHGRRQLKL 105
G +L EQVSHHPPVTA ++K +++ F S+ V L
Sbjct: 128 PEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASF-TKSLMLTVKQFGHTML 186
Query: 106 LNHNETYEMNSPKLCIRFLPV--PGADWVGNVKIKCYETGLEAELFYKANPFIALRRNHR 163
+E+Y + P L I + V P + G I+ TGL + + + +
Sbjct: 187 DIKDESYLVTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYFS--GKKN 243
Query: 164 AVKGKIYNSSSS-----KILYEIDGHWDRTVSLKDVN-NGKSTIIYNAKEVLTGLKAPIV 217
+ K +IY S K LY I G W + + N +S + Y+A + V
Sbjct: 244 SFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEESRLFYDAARIPAEHL--NV 301
Query: 218 KDLEEMWPSESAAVWSEVSQYIMRQDWEKASEAKKAVEEKQRKLLRERESAGETWVPKHF 277
K LEE P ES W +V+ I D+ ++ K +EE QR+L +E E+ G +W + F
Sbjct: 302 KPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWF 361
Query: 278 TVTCNKERGWDCSSIKKVVPP 298
K+ + + + + P
Sbjct: 362 -----KDFDYSVTPEEGALVP 377
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 305 | |||
| d1zhxa1 | 433 | Oxysterol-binding protein homolog 4, KES1 {Baker's | 100.0 |
| >d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4, KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Oxysterol-binding protein-like superfamily: Oxysterol-binding protein-like family: Oxysterol-binding protein domain: Oxysterol-binding protein homolog 4, KES1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-76 Score=569.19 Aligned_cols=271 Identities=29% Similarity=0.440 Sum_probs=236.1
Q ss_pred CCCCHHHHHHHHHHHhhhccCCC--------ccccCCCCCCCCCeEEee--------cCcEEEEeeecccCCceeEEEEE
Q 021919 7 SLESPLERFTAVVAWSISMNRPP--------VFGSAPYNPVLGETHHVS--------RGNLNILLEQVSHHPPVTALHAT 70 (305)
Q Consensus 7 ~~~dp~eRm~~V~~f~iS~~~~~--------~~~~KPfNPiLGETf~~~--------~~~~~~iaEQVSHHPPisA~~~~ 70 (305)
..+||++||++|++|+||++++. ...+|||||||||||++. .++++|||||||||||||||||+
T Consensus 73 ~e~~p~eRm~~V~~f~lS~~~~~~~~~~~~~~~~kKPfNPiLGETfe~~~~d~~~~~~~~~~~iaEQVSHHPPIsA~~~~ 152 (433)
T d1zhxa1 73 VESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIF 152 (433)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCcccceEEEEEecCCCCcCCcEEEEEeCCCCCCcceeEEEE
Confidence 34559999999999999997531 234899999999999875 24689999999999999999999
Q ss_pred eCCCCEEEEEEEeeccEEEeeEEEEEEcceEEEEEcCCceeEEecCCceEEE--EeecceEEeeeeEEEEeCCCCceEEE
Q 021919 71 DEKENIEIIWCQHPAPKFYGASVEAEVHGRRQLKLLNHNETYEMNSPKLCIR--FLPVPGADWVGNVKIKCYETGLEAEL 148 (305)
Q Consensus 71 ~~~~g~~~~g~~~~~~kF~G~sv~~~~~G~~~i~f~~~~e~y~~~~P~~~v~--i~G~~~~e~~G~~~i~~~~tg~~a~i 148 (305)
+++.||+++|+..++++|+| ++.+.+.|..++.|..++|+|+|++|+++|+ |+|++|+|+.|+|.|.| +||+.|+|
T Consensus 153 ~~~~~~~~~g~~~~~~~f~~-s~~i~~~g~~~~~l~~~~E~Y~~~~P~~~i~gii~G~~~vE~~G~~~I~~-~tg~~a~i 230 (433)
T d1zhxa1 153 NDKNKVKLQGYNQIKASFTK-SLMLTVKQFGHTMLDIKDESYLVTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVI 230 (433)
T ss_dssp ETTTTEEEEEEEEEEEEECT-TCCEEEEEECCEEEEETTEEEEEECCCEEEECTTTTCCEEEECSEEEEEE-TTSCEEEE
T ss_pred cCCCCEEEEEEeeeeeeecc-eEEEEEcceEEEEEEecCcEEEEecCCEEEEEEEcCCceEEecceEEEEe-CCCCEEEE
Confidence 99999999999999999965 4555555555566655799999999999999 89999999999999999 89999999
Q ss_pred EEeeCCcccccCcceEEEEEEEeCCC-----CeeEEEEEEEecceEEEEEcCC-CceEEEEecccccCCCCCccccCCCC
Q 021919 149 FYKANPFIALRRNHRAVKGKIYNSSS-----SKILYEIDGHWDRTVSLKDVNN-GKSTIIYNAKEVLTGLKAPIVKDLEE 222 (305)
Q Consensus 149 ~F~~~~~~~~~~~~~~v~G~I~~~~~-----~~~~~~i~G~W~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (305)
+|+++|| ++|+.|.|+|+|++.++ .+.+++|+|+|++.+.+...+. ++..++|++++.+ ..+..+.|+++
T Consensus 231 ~f~~kg~--fsg~~~~v~g~I~~~~~~~~~~~~~l~~i~G~W~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~p~e~ 306 (433)
T d1zhxa1 231 EFSGRGY--FSGKKNSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEESRLFYDAARIP--AEHLNVKPLEE 306 (433)
T ss_dssp EEECSSS--SCSSSSEEEEEEESSTTGGGCGGGCSEEEEEETTSEEEEEETTCGGGCEEEEETTTSC--CCCCBCCCGGG
T ss_pred EEcCCCc--cCCCcceEEEEEEeCCCCCccccceeEEEecccCceEEEEeCCCCCcceEEEeCCcCC--cccccCCCccc
Confidence 9999999 45889999999998632 2578999999999999987643 3567899998853 23455678999
Q ss_pred CCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeeeEEecCC
Q 021919 223 MWPSESAAVWSEVSQYIMRQDWEKASEAKKAVEEKQRKLLRERESAGETWVPKHFTVTCNK 283 (305)
Q Consensus 223 ~~ptdSr~rW~~d~~al~~gd~~~A~~eK~~lEe~QR~~rk~r~~~~~~w~P~~F~~~~~~ 283 (305)
+.|+|||+||++|++||++||++.|+++|.+|||+||++||+|+++|+.|+||||+++.++
T Consensus 307 ~~p~eS~~~wr~d~~ale~Gd~d~A~~eK~~LEe~QR~~Rk~re~~g~~w~Pr~F~~~~~~ 367 (433)
T d1zhxa1 307 QHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDYS 367 (433)
T ss_dssp CCTTBHHHHTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSEEEEECS
T ss_pred CCCCCCccccHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcEeccCCC
Confidence 9999999999999999999999999999999999999999999999999999999998753
|