Citrus Sinensis ID: 021925

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASRKYIYDDLLNFDAGPQHFIFYFLFF
Secondary Structure (PSIPRED)
cccEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEcccccEEEEEEccccEEEEEEccccEEEccccccEEcccccccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEccccccccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEccccEEEEEEcEEEEEEEEcccEEEEcccccEEcccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEEcccccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEccccEEEEEEccccEEEcccccEEEEEEcccccEEEEccccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mrpilmkgherpltylkynkdgdllfscakdhtptvwfadngerlgtyrghngavwccdvsrdsmtliTGSADQTAKLWnvetgaqlftfnfdsparsvdfavgdklavittdpfmelnSAIHVKRiardpadqggesvlilkgpqgrinravwgplnrtIISAGEDAIVRIWDTETGKLlkesdketghkkTITSLakaadgshfltgsldksaKLWDARTLELIKTYVterpvnavtmsplldhvcigepqTIKFMLLVYLFVLFLDILFYNLYCSASRKYIYddllnfdagpqhFIFYFLFF
Flexible Loop (DISEMBL)
mrpilmkgherpltylKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLilkgpqgrinravwgpLNRTiisagedaivRIWDTETGkllkesdketghkktitslakaadgshfltgsldksakLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASRKYIYDDLLNFDAGPQHFIFYFLFF
Low Complexity Region (SEG)
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKfmllvylfvlfldilfyNLYCSASRKYIYDDLLNFDAGPQHFIFYFLFF
Disordered region (IsUnstruct)
***********PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL***********************SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASRKYIYDDLLNFDAGPQHFIFYFLF*
Disordered Region (DISOPRED)
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASRKYIYDDLLNFDAGPQHFIFYFLFF
Disordered Region (DISEMBL)
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASRKYIYDDLLNFDAGPQHFIFYFLFF
Disordered Region (DISPRO)
*RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASRKYIYDDLLNFDAGPQHFIFYFLFF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASRKYIYDDLLNFDAGPQHFIFYFLFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
Q38884	328	Eukaryotic translation in	no	no	0.829	0.771	0.760	1e-109
B0XFT7	328	Eukaryotic translation in	N/A	no	0.819	0.762	0.431	8e-57
B4Q354	326	Eukaryotic translation in	N/A	no	0.816	0.763	0.425	5e-56
B4I195	326	Eukaryotic translation in	N/A	no	0.816	0.763	0.425	5e-56
O02195	326	Eukaryotic translation in	yes	no	0.816	0.763	0.425	5e-56
Q29L19	326	Eukaryotic translation in	yes	no	0.816	0.763	0.433	8e-56
B4GSH1	326	Eukaryotic translation in	N/A	no	0.816	0.763	0.433	8e-56
B3N4C7	326	Eukaryotic translation in	N/A	no	0.816	0.763	0.421	2e-55
Q16K15	326	Eukaryotic translation in	N/A	no	0.816	0.763	0.421	2e-55
B4JB43	326	Eukaryotic translation in	N/A	no	0.822	0.769	0.421	1e-54

>sp|Q38884|EIF3I_ARATH Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/255 (76%), Positives = 223/255 (87%), Gaps = 2/255 (0%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+L+YN++GDLLFSCAKDHTPT+WFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS  LITGSADQTAKLW+V++G +LFTF F++P RSVDFAVGD+LAVITTD F++  +
Sbjct: 61  SRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRTA 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
           AIHVKRIA DP +Q  ESVL+L  P G  RINRAVWGPLN+TI+S GED ++RIWD ETG
Sbjct: 121 AIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAETG 180

Query: 179 KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
           KLLK+SD+E GHKK ITSL KAAD SHFLTGSLDK+AKLWD RTL L+KTY T  PVNAV
Sbjct: 181 KLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAV 240

Query: 239 TMSPLLDHVCIGEPQ 253
           ++SPLL+HV +G  Q
Sbjct: 241 SLSPLLNHVVLGGGQ 255

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Arabidopsis thaliana (taxid: 3702)

>sp|B0XFT7|EIF3I_CULQU Eukaryotic translation initiation factor 3 subunit I OS=Culex quinquefasciatus GN=CPIJ018275 PE=3 SV=1

 Score =  221 bits (562), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 111/257 (43%), Positives = 161/257 (62%), Gaps = 7/257 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           M+P++++GHER +T +KYN++GDL+FS AKDH P+VWF+ NGERLGTY GH GAVWC DV
Sbjct: 1   MKPLMLQGHERAITQIKYNREGDLIFSTAKDHKPSVWFSLNGERLGTYNGHQGAVWCVDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
              +  LITG+ D + KLW+VETG+ L T   +S AR+ +F+     A  +TD  M  NS
Sbjct: 61  DWTTTRLITGAGDMSTKLWDVETGSVLGTIPCNSAARTANFSFSGNQASYSTDKAMGHNS 120

Query: 121 AIHVKRIAR-DPADQGGESVLIL---KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
            + +  +   D +      VL L   +  Q +I   +WG L+ T+I+  E+  +RIWD  
Sbjct: 121 ELFIIDVRNVDSSISSQSPVLKLTMNQSIQTKITSMLWGALDETVITGHENGSIRIWDLR 180

Query: 177 TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN 236
           T K L   +  TG    I  +  +ADG+  ++ S D +AKL+D+ +L  +KTY TERPVN
Sbjct: 181 TAKELNSVNDHTG---VINDMQLSADGTMLVSASKDTTAKLFDSESLMCLKTYKTERPVN 237

Query: 237 AVTMSPLLDHVCIGEPQ 253
           +  +SP+ +HV +G  Q
Sbjct: 238 SAAISPIHEHVVLGGGQ 254

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Culex quinquefasciatus (taxid: 7176)

>sp|B4Q354|EIF3I_DROSI Eukaryotic translation initiation factor 3 subunit I OS=Drosophila simulans GN=Trip1 PE=3 SV=1

 Score =  218 bits (555), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 109/256 (42%), Positives = 158/256 (61%), Gaps = 7/256 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct: 61  DWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query: 121 A---IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
               I V+      ++Q  E  L +   + +I   +WGPL+ TII+  ++  + IWD   
Sbjct: 121 ELFLIDVRNADSSLSEQ--EPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRK 178

Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
           G+  K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+
Sbjct: 179 GQ--KVVDSGTDHSAGINDMQLSKDGTMFVTASRDTTAKLFDSESLMCLKTYKTERPVNS 236

Query: 238 VTMSPLLDHVCIGEPQ 253
             +SP++DHV +G  Q
Sbjct: 237 AAISPIMDHVVLGGGQ 252

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila simulans (taxid: 7240)

>sp|B4I195|EIF3I_DROSE Eukaryotic translation initiation factor 3 subunit I OS=Drosophila sechellia GN=Trip1 PE=3 SV=1

 Score =  218 bits (555), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 109/256 (42%), Positives = 158/256 (61%), Gaps = 7/256 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct: 61  DWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query: 121 A---IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
               I V+      ++Q  E  L +   + +I   +WGPL+ TII+  ++  + IWD   
Sbjct: 121 ELFLIDVRNADSSLSEQ--EPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRK 178

Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
           G+  K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+
Sbjct: 179 GQ--KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNS 236

Query: 238 VTMSPLLDHVCIGEPQ 253
             +SP++DHV +G  Q
Sbjct: 237 AAISPIMDHVVLGGGQ 252

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila sechellia (taxid: 7238)

>sp|O02195|EIF3I_DROME Eukaryotic translation initiation factor 3 subunit I OS=Drosophila melanogaster GN=Trip1 PE=1 SV=1

 Score =  218 bits (555), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 109/256 (42%), Positives = 158/256 (61%), Gaps = 7/256 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct: 61  DWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query: 121 A---IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
               I V+      ++Q  E  L +   + +I   +WGPL+ TII+  ++  + IWD   
Sbjct: 121 ELFLIDVRNADSSLSEQ--EPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRK 178

Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
           G+  K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+
Sbjct: 179 GQ--KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNS 236

Query: 238 VTMSPLLDHVCIGEPQ 253
             +SP++DHV +G  Q
Sbjct: 237 AAISPIMDHVVLGGGQ 252

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila melanogaster (taxid: 7227)

>sp|Q29L19|EIF3I_DROPS Eukaryotic translation initiation factor 3 subunit I OS=Drosophila pseudoobscura pseudoobscura GN=Trip1 PE=3 SV=2

 Score =  217 bits (553), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 111/256 (43%), Positives = 155/256 (60%), Gaps = 7/256 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D T KLW+VE G  + +    S  R+ +F+     A  +TD  M  N 
Sbjct: 61  DWESRKLITGAGDMTTKLWDVEYGTIIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQNC 120

Query: 121 A---IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
               I V+      ADQ     L +   + +I    WGPL+ TII+  ++  + IWD   
Sbjct: 121 ELFIIDVRNADSTLADQ--TPTLRIPMTESKITSMQWGPLDETIITGHDNGNIAIWDVRK 178

Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
           G+  K  D  + H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+
Sbjct: 179 GQ--KVVDSGSDHAAGINDMQLSKDGTMFVTASRDTTAKLFDSESLMCLKTYKTERPVNS 236

Query: 238 VTMSPLLDHVCIGEPQ 253
             +SP+LDHV +G  Q
Sbjct: 237 AAISPILDHVVLGGGQ 252

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GSH1|EIF3I_DROPE Eukaryotic translation initiation factor 3 subunit I OS=Drosophila persimilis GN=Trip1 PE=3 SV=1

 Score =  217 bits (553), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 111/256 (43%), Positives = 155/256 (60%), Gaps = 7/256 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D T KLW+VE G  + +    S  R+ +F+     A  +TD  M  N 
Sbjct: 61  DWESRKLITGAGDMTTKLWDVEYGTIIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQNC 120

Query: 121 A---IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
               I V+      ADQ     L +   + +I    WGPL+ TII+  ++  + IWD   
Sbjct: 121 ELFIIDVRNADSTLADQ--TPTLRIPMTESKITSMQWGPLDETIITGHDNGNIAIWDVRK 178

Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
           G+  K  D  + H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+
Sbjct: 179 GQ--KVVDSGSDHAAGINDMQLSKDGTMFVTASRDTTAKLFDSESLMCLKTYKTERPVNS 236

Query: 238 VTMSPLLDHVCIGEPQ 253
             +SP+LDHV +G  Q
Sbjct: 237 AAISPILDHVVLGGGQ 252

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila persimilis (taxid: 7234)

>sp|B3N4C7|EIF3I_DROER Eukaryotic translation initiation factor 3 subunit I OS=Drosophila erecta GN=Trip1 PE=3 SV=1

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/256 (42%), Positives = 157/256 (61%), Gaps = 7/256 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D T K+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct: 61  DWESRKLITGAGDMTTKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query: 121 A---IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
               I V+      ++Q  E  L +   + +I   +WGPL+ TII+  ++  + IWD   
Sbjct: 121 ELFLIDVRNADSSLSEQ--EPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRK 178

Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
           G+  K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+
Sbjct: 179 GQ--KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNS 236

Query: 238 VTMSPLLDHVCIGEPQ 253
             +SP++DHV +G  Q
Sbjct: 237 AAISPIMDHVVLGGGQ 252

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila erecta (taxid: 7220)

>sp|Q16K15|EIF3I_AEDAE Eukaryotic translation initiation factor 3 subunit I OS=Aedes aegypti GN=AAEL013144 PE=3 SV=1

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/256 (42%), Positives = 159/256 (62%), Gaps = 7/256 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           M+P++++GHER +T +KYN++GDL+FS AKDH P+VWF+ NGERLGT+ GH GAVWC DV
Sbjct: 1   MKPLMLQGHERAITQIKYNREGDLIFSTAKDHKPSVWFSLNGERLGTFNGHQGAVWCVDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
              +  LITGS D + KLW+VETG+ L T   +S AR+V+F+     A  +TD  M  N 
Sbjct: 61  DWTTTRLITGSGDMSTKLWDVETGSVLGTIPCNSAARTVNFSYSGNQASYSTDKAMGHNC 120

Query: 121 A---IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
               I V+ +    ++Q     L +   Q +I   +WG L+ T+I+  E+  +RIWD   
Sbjct: 121 ELFIIDVRNVDSSISNQSPVLKLTMN-QQSKITSMLWGALDETVITGHENGSIRIWDLRA 179

Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
            K L   +    H   I  +  ++DG+  ++ S D +AKL+D+ +L  +KTY TERPVN+
Sbjct: 180 AKELNSVND---HTLNINDMQLSSDGTMLVSASKDATAKLFDSESLMCLKTYKTERPVNS 236

Query: 238 VTMSPLLDHVCIGEPQ 253
             +SP+ +HV +G  Q
Sbjct: 237 AAISPIHEHVVLGGGQ 252

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Aedes aegypti (taxid: 7159)

>sp|B4JB43|EIF3I_DROGR Eukaryotic translation initiation factor 3 subunit I OS=Drosophila grimshawi GN=Trip1 PE=3 SV=1

 Score =  213 bits (543), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/254 (42%), Positives = 151/254 (59%), Gaps = 3/254 (1%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFS +KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSSSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D T KLW+VE G  + +    S  R+ +F+     A  +TD  M  N 
Sbjct: 61  DWESRKLITGAGDMTTKLWDVEYGTVIASIATKSSVRTSNFSFSGNQAAYSTDKAMGQNC 120

Query: 121 AIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
            + +  +   D      E  L +   + +I    WGPL+ TII+  ++  + IWD   G+
Sbjct: 121 ELFIIDVRNADSTLSEQEPTLRIPMVESKITSMQWGPLDETIITGHDNGNIAIWDVRKGQ 180

Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             K  D    H   I  +  + DG+ F+T S D +AKL+DA +L  +KTY TERPVN+  
Sbjct: 181 --KVVDSGVDHAAGINDMQLSKDGTMFVTASKDNTAKLFDAESLMCLKTYKTERPVNSAA 238

Query: 240 MSPLLDHVCIGEPQ 253
           +SP+ DHV +G  Q
Sbjct: 239 ISPIFDHVVLGGGQ 252

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila grimshawi (taxid: 7222)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
225424530	326	PREDICTED: eukaryotic translation initia	0.763	0.714	0.893	1e-133
356497716	326	PREDICTED: eukaryotic translation initia	0.763	0.714	0.889	1e-132
449437818	326	PREDICTED: eukaryotic translation initia	0.763	0.714	0.881	1e-132
13936812	326	TGF-beta receptor-interacting protein 1	0.763	0.714	0.869	1e-130
255561759	326	eukaryotic translation initiation factor	0.763	0.714	0.873	1e-130
357453275	321	Eukaryotic translation initiation factor	0.747	0.710	0.870	1e-128
356531718	326	PREDICTED: eukaryotic translation initia	0.763	0.714	0.853	1e-128
356544180	326	PREDICTED: eukaryotic translation initia	0.763	0.714	0.857	1e-127
224111384	326	predicted protein [Populus trichocarpa]	0.763	0.714	0.837	1e-124
224099627	326	predicted protein [Populus trichocarpa]	0.763	0.714	0.822	1e-122

>gi|225424530|ref|XP_002285281.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I [Vitis vinifera] gi|147853445|emb|CAN80198.1| hypothetical protein VITISV_030908 [Vitis vinifera] gi|297737552|emb|CBI26753.3| unnamed protein product [Vitis vinifera]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/253 (89%), Positives = 240/253 (94%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW CDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWTCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LITGSADQT KLWNVETGAQLFTFNFDSPARSVDF+VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSMRLITGSADQTVKLWNVETGAQLFTFNFDSPARSVDFSVGDKLAVITTDPFMELTS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIARDP+ Q  ES L++KGPQGRINRA+WGPLNRTIISAGEDAIVRIWD+ETGKL
Sbjct: 121 AIHVKRIARDPSQQTAESALVIKGPQGRINRAIWGPLNRTIISAGEDAIVRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESDKETGHKKT+TSL+KA DGSHF+TGSLDKSAKLWD+RTL LIKTY+TERPVNAVTM
Sbjct: 181 LKESDKETGHKKTVTSLSKAVDGSHFVTGSLDKSAKLWDSRTLTLIKTYLTERPVNAVTM 240

Query: 241 SPLLDHVCIGEPQ 253
           SPLLDHV +G  Q
Sbjct: 241 SPLLDHVVLGGGQ 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497716|ref|XP_003517705.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Glycine max]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/253 (88%), Positives = 240/253 (94%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS  LITGSADQTAKLWNV+TG QLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL S
Sbjct: 61  SRDSGRLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIA DPA+Q GESVL++KGPQGRINRA+WGPLNRTIISAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIANDPAEQTGESVLLIKGPQGRINRAIWGPLNRTIISAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESDKE+GHKKT+TSLAK+ADGSHFLTGSLDKSA+LWD RTL LIKTYVTERPVNAV M
Sbjct: 181 LKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRTLTLIKTYVTERPVNAVAM 240

Query: 241 SPLLDHVCIGEPQ 253
           SPLLDHV +G  Q
Sbjct: 241 SPLLDHVVLGGGQ 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437818|ref|XP_004136687.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Cucumis sativus] gi|449494685|ref|XP_004159618.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Cucumis sativus]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 223/253 (88%), Positives = 241/253 (95%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVW+ADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWYADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LITGSADQTAKLWNV+TG QLF+FNFDSPAR+VDF+VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIARDP++Q GESVL+LKGPQGRINRAVWGPLN+TIISAGEDA+VRIWD+ETGKL
Sbjct: 121 AIHVKRIARDPSEQTGESVLLLKGPQGRINRAVWGPLNKTIISAGEDAVVRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESDKE GHKKT+TSL K++DGSHF+TGSLDKSAKLWD RTL LIKTYVTERPVNAVTM
Sbjct: 181 LKESDKEIGHKKTVTSLTKSSDGSHFITGSLDKSAKLWDTRTLTLIKTYVTERPVNAVTM 240

Query: 241 SPLLDHVCIGEPQ 253
           SPLLDHV +G  Q
Sbjct: 241 SPLLDHVVLGGGQ 253

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13936812|gb|AAK49947.1|AF335551_1 TGF-beta receptor-interacting protein 1 [Phaseolus vulgaris]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/253 (86%), Positives = 239/253 (94%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS  LITGSADQTAKLWNV+TG QLFTFNFDSPARSVDF+VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSGRLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFSVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIA DP +Q G+SV+++KGPQGRINRA+WGPLNRTIISAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIANDPTEQTGDSVVLIKGPQGRINRAIWGPLNRTIISAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           +KESDKE+GHKKT+TSLAK+ADGSHFLTGSLDKSA+LWD RTL LIKTYVTERPVNAV M
Sbjct: 181 IKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRTLTLIKTYVTERPVNAVAM 240

Query: 241 SPLLDHVCIGEPQ 253
           SPLLDHV +G  Q
Sbjct: 241 SPLLDHVVLGGGQ 253

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561759|ref|XP_002521889.1| eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] gi|223538927|gb|EEF40525.1| eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 221/253 (87%), Positives = 240/253 (94%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYNK+GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNKEGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LITGSADQTAKLW+V+TG QL++FNFDSPAR+VD +VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSMRLITGSADQTAKLWDVKTGTQLYSFNFDSPARAVDLSVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIARDP +Q GESVL+LKGPQGRINRAVWGPLN+TI+SAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIARDPDNQTGESVLVLKGPQGRINRAVWGPLNKTILSAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESD+E GHKKTITSL K++DGSHFLTGSLDKSAKLWD RTL LIKTYVTERPVNAVTM
Sbjct: 181 LKESDREIGHKKTITSLTKSSDGSHFLTGSLDKSAKLWDIRTLTLIKTYVTERPVNAVTM 240

Query: 241 SPLLDHVCIGEPQ 253
           SPLLDHV +G  Q
Sbjct: 241 SPLLDHVVLGGGQ 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453275|ref|XP_003596914.1| Eukaryotic translation initiation factor 3 subunit I [Medicago truncatula] gi|355485962|gb|AES67165.1| Eukaryotic translation initiation factor 3 subunit I [Medicago truncatula]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/248 (87%), Positives = 236/248 (95%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           MKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDVSRDS 
Sbjct: 1   MKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSG 60

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            LITGSADQTAKLWNV+TG QLFTFNFDSPARSVDF+VGDKLAVITTDPFMEL+SAIHVK
Sbjct: 61  RLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFSVGDKLAVITTDPFMELSSAIHVK 120

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
           RIA+DP+DQ  ES+L++KGPQGRINRA+WGPLN+TIISAGEDA++RIWD+ETGKLLKESD
Sbjct: 121 RIAKDPSDQTAESLLVIKGPQGRINRAIWGPLNKTIISAGEDAVIRIWDSETGKLLKESD 180

Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245
           KE GHKKTITSLAK+ADGSHF TGSLDKSAK+WD+RTL L+KTYVTERPVNAVTMSPLLD
Sbjct: 181 KELGHKKTITSLAKSADGSHFCTGSLDKSAKIWDSRTLSLVKTYVTERPVNAVTMSPLLD 240

Query: 246 HVCIGEPQ 253
           HV +G  Q
Sbjct: 241 HVVLGGGQ 248

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531718|ref|XP_003534423.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Glycine max]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/253 (85%), Positives = 239/253 (94%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVW CDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWTCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS+ LITGSADQTAKLW+V++G QL+TFNFDSPARSVDF+VGD+LAVITTDPFMEL+S
Sbjct: 61  SRDSVRLITGSADQTAKLWDVQSGLQLYTFNFDSPARSVDFSVGDRLAVITTDPFMELSS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIA DP +Q GES+L++KGP GRINRA+WGPLN TIISAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIADDPTEQSGESLLLIKGPLGRINRAIWGPLNSTIISAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESDKE+GHKKT+TSLAK+ADGSHFLTGSLDKSA+LWD R+L LIKTYVTERPVNAVTM
Sbjct: 181 LKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRSLTLIKTYVTERPVNAVTM 240

Query: 241 SPLLDHVCIGEPQ 253
           SPLLDHV IG  Q
Sbjct: 241 SPLLDHVVIGGGQ 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544180|ref|XP_003540532.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Glycine max] gi|255646294|gb|ACU23631.1| unknown [Glycine max]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/253 (85%), Positives = 237/253 (93%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVW CDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWTCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS  LITGSADQTAKLW+V++G QL+TFNFDSPARSVDF+VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSARLITGSADQTAKLWDVQSGLQLYTFNFDSPARSVDFSVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIA DP+ Q GESVL++KGPQGRINRA+WGPLN TIISAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIANDPSQQIGESVLLIKGPQGRINRAIWGPLNTTIISAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           L+ESDKE+GHKKT+TSLAK+AD SHFLTGSLDKSA+LWD R+L LIKTYVTERPVNAVTM
Sbjct: 181 LQESDKESGHKKTVTSLAKSADDSHFLTGSLDKSARLWDTRSLTLIKTYVTERPVNAVTM 240

Query: 241 SPLLDHVCIGEPQ 253
           SPLLDHV IG  Q
Sbjct: 241 SPLLDHVVIGGGQ 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111384|ref|XP_002315834.1| predicted protein [Populus trichocarpa] gi|118484697|gb|ABK94219.1| unknown [Populus trichocarpa] gi|222864874|gb|EEF02005.1| predicted protein [Populus trichocarpa]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/253 (83%), Positives = 229/253 (90%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN++GDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNREGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LIT SADQ+ KLWNV+TGAQLFTFNF+SPARSVDF+VGDKLAVITTDPFM + S
Sbjct: 61  SRDSMLLITASADQSVKLWNVQTGAQLFTFNFNSPARSVDFSVGDKLAVITTDPFMGVTS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AI+VK IA DP+ Q GESVL + GP GRINRAVWG LN+TIISAGED++VRIWD+ETGKL
Sbjct: 121 AINVKSIAEDPSQQSGESVLTITGPTGRINRAVWGSLNKTIISAGEDSVVRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESD E GHKK ITSL K+ADGSHFLTGSLDKSAKLWD RTL LIKTY TERPVNAVTM
Sbjct: 181 LKESDPEVGHKKPITSLTKSADGSHFLTGSLDKSAKLWDTRTLTLIKTYATERPVNAVTM 240

Query: 241 SPLLDHVCIGEPQ 253
           SPLLDHV +G  Q
Sbjct: 241 SPLLDHVVLGGGQ 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099627|ref|XP_002311556.1| predicted protein [Populus trichocarpa] gi|222851376|gb|EEE88923.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/253 (82%), Positives = 229/253 (90%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN++GDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNREGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LIT SADQ+ KLWNV+TGAQL+TF+F+SPARSVDF+VGDKLAVITTDPFM + S
Sbjct: 61  SRDSMQLITASADQSVKLWNVQTGAQLYTFSFNSPARSVDFSVGDKLAVITTDPFMGVTS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AI+VKRIA DP+ Q GESVL + GP GRINRAVWGPLNRTIISAGED +VRIWD+ETGKL
Sbjct: 121 AINVKRIADDPSQQSGESVLTITGPAGRINRAVWGPLNRTIISAGEDCVVRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKES+ E GHKK I+SL K+ADGSHFLTGSLDKSAK+ D+RTL LIK Y TERPVNAVTM
Sbjct: 181 LKESEPEVGHKKPISSLTKSADGSHFLTGSLDKSAKVGDSRTLTLIKNYTTERPVNAVTM 240

Query: 241 SPLLDHVCIGEPQ 253
           SPLLDHV +G  Q
Sbjct: 241 SPLLDHVVLGGGQ 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2063009	328	TRIP-1 "AT2G46280" [Arabidopsi	0.829	0.771	0.760	4e-106
TAIR|locus:2062994	355	AT2G46290 "AT2G46290" [Arabido	0.829	0.712	0.764	1.4e-105
FB|FBgn0015834	326	Trip1 "Trip1" [Drosophila mela	0.822	0.769	0.421	3e-53
ZFIN|ZDB-GENE-040426-1922	325	eif3i "eukaryotic translation	0.816	0.766	0.405	2.8e-50
UNIPROTKB|Q5EBE8	325	eif3i "Eukaryotic translation	0.816	0.766	0.417	9.5e-50
UNIPROTKB|E1C6T8	325	EIF3I "Uncharacterized protein	0.816	0.766	0.417	1.2e-49
UNIPROTKB|Q66J51	325	eif3i "Eukaryotic translation	0.816	0.766	0.413	1.5e-49
DICTYBASE|DDB_G0285683	331	eif3I "eukaryotic translation	0.816	0.752	0.425	2e-49
POMBASE|SPAC4D7.05	328	sum1 "translation initiation f	0.826	0.768	0.397	2e-49
UNIPROTKB|B5FZ19	325	EIF3I "Eukaryotic translation	0.816	0.766	0.409	6.7e-49

TAIR|locus:2063009 TRIP-1 "AT2G46280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
 Identities = 194/255 (76%), Positives = 223/255 (87%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPILMKGHERPLT+L+YN++GDLLFSCAKDHTPT+WFADNGERLGTYRGHNGAVWCCDV
Sbjct:     1 MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             SRDS  LITGSADQTAKLW+V++G +LFTF F++P RSVDFAVGD+LAVITTD F++  +
Sbjct:    61 SRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRTA 120

Query:   121 AIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
             AIHVKRIA DP +Q  ESVL+L  P G  RINRAVWGPLN+TI+S GED ++RIWD ETG
Sbjct:   121 AIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAETG 180

Query:   179 KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
             KLLK+SD+E GHKK ITSL KAAD SHFLTGSLDK+AKLWD RTL L+KTY T  PVNAV
Sbjct:   181 KLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAV 240

Query:   239 TMSPLLDHVCIGEPQ 253
             ++SPLL+HV +G  Q
Sbjct:   241 SLSPLLNHVVLGGGQ 255

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2062994 AT2G46290 "AT2G46290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
 Identities = 195/255 (76%), Positives = 222/255 (87%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPILMKGHERPLT+L+YN++GDLLFSCAKDHTPTVWFADNGERLGTYRGH+GAVWCCD+
Sbjct:    28 MRPILMKGHERPLTFLRYNRNGDLLFSCAKDHTPTVWFADNGERLGTYRGHSGAVWCCDI 87

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             SRDS  LITGSADQTAKLW+V++G +LFTF F +PARSVDF+VGD LAVITTD F+  +S
Sbjct:    88 SRDSSRLITGSADQTAKLWDVKSGKELFTFKFGAPARSVDFSVGDHLAVITTDHFVGTSS 147

Query:   121 AIHVKRIARDPADQGGESVLILKGPQGR--INRAVWGPLNRTIISAGEDAIVRIWDTETG 178
             AIHVKRIA DP DQ G+SVL+L+ P G+  INRAVWGPLN+TI+S GEDA +RIWD ETG
Sbjct:   148 AIHVKRIAEDPEDQVGDSVLVLQSPDGKKKINRAVWGPLNQTIVSGGEDAAIRIWDAETG 207

Query:   179 KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
             KLLK+SD+E GHK+ ITSL KAAD SHFLTGS DK+AKLWD RTL LIKTY T  PVNAV
Sbjct:   208 KLLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKTAKLWDMRTLTLIKTYTTVVPVNAV 267

Query:   239 TMSPLLDHVCIGEPQ 253
              MSPLL+HV +G  Q
Sbjct:   268 AMSPLLNHVVLGGGQ 282

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

FB|FBgn0015834 Trip1 "Trip1" [Drosophila melanogaster (taxid:7227)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 107/254 (42%), Positives = 157/254 (61%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct:     1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct:    61 DWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query:   121 AIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct:   121 ELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
               K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+  
Sbjct:   181 --KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAA 238

Query:   240 MSPLLDHVCIGEPQ 253
             +SP++DHV +G  Q
Sbjct:   239 ISPIMDHVVLGGGQ 252

GO:0003743 "translation initiation factor activity" evidence=ISS;NAS

GO:0006412 "translation" evidence=ISS;NAS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS;NAS

GO:0005829 "cytosol" evidence=NAS

GO:0006413 "translational initiation" evidence=ISS

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-040426-1922 eif3i "eukaryotic translation initiation factor 3, subunit I" [Danio rerio (taxid:7955)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 103/254 (40%), Positives = 158/254 (62%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             M+PIL++GHER +T +KYN++GDLLFS AKD    VW++ NGERLGTY GH GAVWC DV
Sbjct:     1 MKPILLQGHERSITQIKYNREGDLLFSVAKDPIANVWYSVNGERLGTYNGHTGAVWCVDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  ++TGSAD + +LW+ ETG QL      S  R+  F     + + +TD  M    
Sbjct:    61 DWDTKNVLTGSADNSCRLWDCETGKQLALLETSSAVRTCGFDFSGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              ++   + RDP   +  +  + +   + +I  AVWGPL   +I+  E+  +  +  ++G+
Sbjct:   121 FLNYYDL-RDPQQIEDNQPYISVPCSESKITSAVWGPLGEFVIAGHENGEINQFSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             +LK++ KE  H K I  +  + D +  ++ S D +AK++D+ TLE +KT+ TERPVN+  
Sbjct:   180 VLKKA-KE--HTKQINDIQSSVDLTMIISASKDCTAKMFDSSTLEHVKTFKTERPVNSAA 236

Query:   240 MSPLLDHVCIGEPQ 253
             +SP++DHV +G  Q
Sbjct:   237 ISPIMDHVVMGGGQ 250

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q5EBE8 eif3i "Eukaryotic translation initiation factor 3 subunit I" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 106/254 (41%), Positives = 156/254 (61%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPIL++GHER +T +KYN+DGDLLF+ AKD    VW++ NGERLGTY GH GAVWC DV
Sbjct:     1 MRPILLQGHERSITQIKYNRDGDLLFTVAKDPVVNVWYSVNGERLGTYSGHTGAVWCVDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  +++GSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M    
Sbjct:    61 DWDTRHVLSGSADNSCRLWDCETGKQLALLETNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP   +  E  + +   + +I  AVWGPL   II+  E+  +  +  ++G+
Sbjct:   121 FVSFIDL-RDPTQIEDNEPYMKIPCSESKITSAVWGPLGENIIAGHENGELNQYSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             ++  S KE  H K I  +  + D + F+T S D ++KL+D+ +LE  KT+ TERPVN+  
Sbjct:   180 IVN-SIKE--HSKQINDIQTSRDMTMFVTASKDCTSKLFDSTSLEHQKTFRTERPVNSAA 236

Query:   240 MSPLLDHVCIGEPQ 253
             +SP+ DHV +G  Q
Sbjct:   237 ISPIYDHVVLGGGQ 250

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

UNIPROTKB|E1C6T8 EIF3I "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 106/254 (41%), Positives = 151/254 (59%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D 
Sbjct:     1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYNGHTGAVWCVDA 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  ++TGSAD + +LW+ ETG QL      S  R+  F  G  + + +TD  M    
Sbjct:    61 DWDTRHVLTGSADNSCRLWDCETGKQLALVKTSSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP+  +  E  + +     +I  AVWGPL   II+  E   +  +  ++G+
Sbjct:   121 FVSFFDL-RDPSQIENNEPYMKIPCSDSKITSAVWGPLGEFIIAGHESGELNQFSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
              L    KE  H K I  +  + D + F+T S D +AKL+D  TLE +KT+ TERPVN+  
Sbjct:   180 QLSNI-KE--HTKQINDIQTSRDMTMFITASKDNTAKLFDCTTLEHLKTFRTERPVNSAA 236

Query:   240 MSPLLDHVCIGEPQ 253
             +SP+ DHV +G  Q
Sbjct:   237 LSPIFDHVVLGGGQ 250

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

UNIPROTKB|Q66J51 eif3i "Eukaryotic translation initiation factor 3 subunit I" [Xenopus laevis (taxid:8355)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 105/254 (41%), Positives = 157/254 (61%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPIL++GHER +T +KYN+DGDLLF+ AKD    VW++ NGERLGTY GH GAVWC DV
Sbjct:     1 MRPILLQGHERSITQIKYNRDGDLLFTVAKDPVVNVWYSVNGERLGTYNGHTGAVWCVDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               ++  +++GSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M    
Sbjct:    61 DWETRHVLSGSADNSCRLWDCETGKQLALLQTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP+  +  E  + +   + +I  AVWGPL   II+  E+  +  +  ++G+
Sbjct:   121 FVSFIDL-RDPSQIEDNEPYMKIPCSESKITSAVWGPLGENIIAGHENGELNHYSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             ++  S KE  H K I  +  + D + F+T S D ++KL+D+ +LE  KT+ TERPVN+  
Sbjct:   180 IVN-SIKE--HSKQINDIQTSRDMTMFVTASKDCTSKLFDSTSLEHQKTFRTERPVNSAA 236

Query:   240 MSPLLDHVCIGEPQ 253
             +SP+ DHV +G  Q
Sbjct:   237 VSPIYDHVVLGGGQ 250

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

DICTYBASE|DDB_G0285683 eif3I "eukaryotic translation initiation factor 3 (eIF3) subunit I" [Dictyostelium discoideum (taxid:44689)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 108/254 (42%), Positives = 161/254 (63%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPI ++ HERP+T + +N++GDLLF  AKD   ++W+  NGER+G+Y+   G V+  DV
Sbjct:     1 MRPISLRLHERPITQVLFNREGDLLFVAAKDKLVSLWYTTNGERIGSYQC-GGVVYSIDV 59

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             S+DS  LIT SAD  A++W+V +G QL + +F+  ARS++F+ GDK  ++ TD  M   +
Sbjct:    60 SQDSKYLITASADAKARVWDVSSGRQLDSTDFEVSARSIEFSQGDKQILVVTDQVMGCQA 119

Query:   121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
              IHV    +D   +  +S   L  PQ +I +A WGPLN+TI ++ ED  VRI+ TE  +L
Sbjct:   120 KIHVFDFDKDEVRKLNKSYT-LPSPQCKITQATWGPLNKTIFASCEDGAVRIYCTEKREL 178

Query:   181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
             +K       H K +T +        F+T S D +AKL+D +TL+L++T+ T RP+NA  +
Sbjct:   179 IKTI---LDHNKLVTRIEWTKHRIMFMTCSKDGTAKLYDTKTLKLLRTFDTGRPINAAGI 235

Query:   241 SPLLDHVCIGEPQT 254
             SPL  HV +G  Q+
Sbjct:   236 SPLKPHVILGGGQS 249

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC4D7.05 sum1 "translation initiation factor eIF3i" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 101/254 (39%), Positives = 153/254 (60%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPI+++GHERPLT +KYN DGDLLFSCAKD    VWF+ NGERLGTY GH GA+W CD+
Sbjct:     1 MRPIILQGHERPLTQIKYNHDGDLLFSCAKDKVINVWFSHNGERLGTYEGHTGAIWTCDI 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             ++ S  +++G+AD T +LW+V+TG QL+ + F +  + V+F   D   +  T+  M    
Sbjct:    61 NKSSTLMVSGAADNTMRLWDVKTGKQLYKWEFPTAVKRVEFNEDDTRILAVTEERMGYAG 120

Query:   121 AIHVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              + V R+    +D   E+ L ++   + +   A W  L++ + +  ED  V  +D  TG+
Sbjct:   121 TVTVFRVPISESDAAAETPLYVITTRESKATVAGWSYLSKFLFTGHEDGSVSRYDAITGE 180

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
              + ES +      TIT L    D ++F+T   D +AK  D  + E+IKTY+T+ P+N  +
Sbjct:   181 FV-ESKQVHNSGSTITDLQFYPDRTYFITSCKDTTAKAIDVDSFEVIKTYLTDTPLNTSS 239

Query:   240 MSPLLDHVCIGEPQ 253
              +P+ D V +G  Q
Sbjct:   240 FTPVQDFVILGGGQ 253

GO:0002183 "cytoplasmic translational initiation" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006413 "translational initiation" evidence=IMP

GO:0016282 "eukaryotic 43S preinitiation complex" evidence=IDA

GO:0034399 "nuclear periphery" evidence=IDA

GO:0065007 "biological regulation" evidence=NAS

GO:0071470 "cellular response to osmotic stress" evidence=IMP

GO:0071540 "eukaryotic translation initiation factor 3 complex, eIF3e" evidence=IDA

GO:0071541 "eukaryotic translation initiation factor 3 complex, eIF3m" evidence=IDA

GO:0003743 "translation initiation factor activity" evidence=IC

UNIPROTKB|B5FZ19 EIF3I "Eukaryotic translation initiation factor 3 subunit I" [Taeniopygia guttata (taxid:59729)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 104/254 (40%), Positives = 152/254 (59%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D 
Sbjct:     1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYNGHTGAVWCVDA 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  ++TGSAD + +LW+ ETG QL      S  R+  F  G  + + +TD  M    
Sbjct:    61 DWDTRHVLTGSADNSCRLWDCETGKQLALVKTSSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP+  +  E  + +     +I  AVWGPL   II+  E+  +  +  ++G+
Sbjct:   121 FVSFFDL-RDPSQIENNEPYMKIPCSDSKITSAVWGPLGEFIIAGHENGELNQFSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
              L    KE  H K I  +  + D + F+T S D +AKL+D  +L+ +KT+ TERPVN+  
Sbjct:   180 QLSNI-KE--HTKQINDIQTSRDMTMFITASKDNTAKLFDCTSLKHLKTFRTERPVNSAA 236

Query:   240 MSPLLDHVCIGEPQ 253
             +SP+ DHV +G  Q
Sbjct:   237 LSPIFDHVVLGGGQ 250

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030682001	SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgun sequence); (326 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00015309001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (363 aa)				•	•	•	•		0.961
	GSVIVG00023929001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (269 aa)				•		•	•		0.955
	GSVIVG00024042001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (344 aa)				•	•	•	•		0.934
	GSVIVG00029350001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (344 aa)				•	•	•	•		0.933
	GSVIVG00031929001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_60, whole geno [...] (464 aa)				•	•	•	•		0.917
	GSVIVG00025658001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (437 aa)				•	•	•	•		0.896
	GSVIVG00001176001	SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)				•	•		•		0.894
	GSVIVG00022664001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (977 aa)				•	•	•	•		0.828
	GSVIVG00033547001	SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (333 aa)				•	•	•	•		0.825
	GSVIVG00022319001	SubName- Full=Chromosome chr14 scaffold_26, whole genome shotgun sequence; (116 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	305
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-38
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-32
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-08
smart00320	40	smart00320, WD40, WD40 repeats	1e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	4e-05
smart00320	40	smart00320, WD40, WD40 repeats	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	7e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  137 bits (347), Expect = 1e-38
 Identities = 73/238 (30%), Positives = 115/238 (48%), Gaps = 16/238 (6%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
           KGH   +T + ++ DG LL + + D T  VW  + GE L T +GH G V     S D   
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65

Query: 67  LITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
           L +GS+D+T +LW++ETG  + T     S   SV F+   ++   ++      +  I V 
Sbjct: 66  LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR-----DKTIKVW 120

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
            +        G+ +  L+G    +N   + P    + S+ +D  +++WD  TGK +    
Sbjct: 121 DVET------GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL- 173

Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242
             TGH   + S+A + DG   L+ S D + KLWD  T + + T    E  VN+V  SP
Sbjct: 174 --TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  121 bits (305), Expect = 2e-32
 Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 19/217 (8%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH   ++ + ++ DG +L S ++D T  VW  + G+ L T RGH   V     S D  
Sbjct: 89  LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148

Query: 66  TLITGSADQTAKLWNVETG--AQLFTFNFDSPARSVDF-AVGDKLAVITTDPFMELNSAI 122
            + + S D T KLW++ TG      T        SV F   G+KL   ++D        I
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSD------GTI 201

Query: 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
            +  +        G+ +  L+G +  +N   + P    + S  ED  +R+WD  TG+ ++
Sbjct: 202 KLWDL------STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255

Query: 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
                +GH  ++TSLA + DG    +GS D + ++WD
Sbjct: 256 TL---SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 99.7 bits (249), Expect = 2e-24
 Identities = 53/199 (26%), Positives = 74/199 (37%), Gaps = 56/199 (28%)

Query: 45  LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG 104
             T +GH G V C   S D   L TGS D T K+W++ETG  L T               
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT--------------- 46

Query: 105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164
                                                LKG  G +           + S 
Sbjct: 47  -------------------------------------LKGHTGPVRDVAASADGTYLASG 69

Query: 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224
             D  +R+WD ETG+ ++     TGH   ++S+A + DG    + S DK+ K+WD  T +
Sbjct: 70  SSDKTIRLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126

Query: 225 LIKTYVT-ERPVNAVTMSP 242
            + T       VN+V  SP
Sbjct: 127 CLTTLRGHTDWVNSVAFSP 145

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 91.3 bits (225), Expect = 1e-20
 Identities = 64/232 (27%), Positives = 98/232 (42%), Gaps = 13/232 (5%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSM 65
            GH        ++ DG LL S + D T  +W   +    L T  GH+ +V     S D  
Sbjct: 239 SGHSDS-VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            L +GS+D T +LW++ETG  L +         V        ++  +     L S     
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS-------SLSFSPDGSLLVSGGSDD 350

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
              R    + G+ +  L+G    +    + P  R + S   D  VR+WD  TG LL+  D
Sbjct: 351 GTIRLWDLRTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
              GH   +TSL  + DG    +GS D + +LWD +T     ++  +  V A
Sbjct: 410 ---GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLA 458

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 84.8 bits (208), Expect = 2e-18
 Identities = 70/261 (26%), Positives = 114/261 (43%), Gaps = 23/261 (8%)

Query: 5   LMKGHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSR 62
            + GH  P++ L ++ DG LL  S + D T  +W    G+ L  T  GH+ +V     S 
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSP 251

Query: 63  DSMTLITGSADQTAKLWNVETGAQLFTFNF--DSPARSVDFA-VGDKLAVITTDPFMELN 119
           D   L +GS+D T +LW++ + + L        S   SV F+  G  LA  ++D      
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD------ 305

Query: 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETG 178
             + +     D       S L LKG +G ++   + P  +  +    +D  +R+WD  TG
Sbjct: 306 GTVRL----WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361

Query: 179 KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT-YVTERPVNA 237
           K L    K       + S++ + DG    +GS D + +LWD  T  L++        V +
Sbjct: 362 KPL----KTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTS 417

Query: 238 VTMSPLLDHVCIG-EPQTIKF 257
           +  SP    +  G    TI+ 
Sbjct: 418 LDFSPDGKSLASGSSDNTIRL 438

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 83.6 bits (205), Expect = 5e-18
 Identities = 63/250 (25%), Positives = 108/250 (43%), Gaps = 21/250 (8%)

Query: 2   RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-LGTYRGHNG----AVW 56
             +L++GHE  +T + ++ DG+LL S + D T  +W  DNGE+ + +  G +      + 
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 57  CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM 116
                 +S+ L + S D T KLW++ T  +L              A      ++      
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA----- 171

Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDT 175
              S   +    +    + G+ +  L G    ++   + P    +I S   D  +R+WD 
Sbjct: 172 ---SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 176 ETGKLLKESDKETGHKKT-ITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTYVTE 232
            TGKLL+ +    GH  + ++S +   DGS   +GS D + +LWD R+    L       
Sbjct: 229 STGKLLRSTLS--GHSDSVVSSFSP--DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284

Query: 233 RPVNAVTMSP 242
             V +V  SP
Sbjct: 285 SSVLSVAFSP 294

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.9 bits (198), Expect = 4e-17
 Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 19/236 (8%)

Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI 68
           +   L  L  ++ G LL +   D   ++    +       RGH  ++     S D   L+
Sbjct: 26  NSLSLLSLGSSESGILLLALLSDSLVSLPDLSSL----LLRGHEDSITSIAFSPDGELLL 81

Query: 69  TGSADQTAKLWNVETGAQL---FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
           +GS+D T KLW+++ G +L        DS    +  +  D  +++        +S++   
Sbjct: 82  SGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA------SSSLDGT 135

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKES 184
               D +   G+ +  L+G    +    + P  + + S    D  +++WD  TGK L   
Sbjct: 136 VKLWDLSTP-GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS-- 192

Query: 185 DKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
               GH   ++SLA + DG     +GS D + +LWD  T +L+++ ++    + V+
Sbjct: 193 -TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.4 bits (186), Expect = 9e-16
 Identities = 27/76 (35%), Positives = 41/76 (53%)

Query: 5   LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
            ++GHE  +  + ++ DG LL S ++D T  VW    GE + T  GH  +V     S D 
Sbjct: 214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG 273

Query: 65  MTLITGSADQTAKLWN 80
             L +GSAD T ++W+
Sbjct: 274 KRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
               LKG  G +    + P  + + +   D  +++WD ETG+LL+      GH   +  +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDV 57

Query: 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242
           A +ADG++  +GS DK+ +LWD  T E ++T       V++V  SP
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP 103

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.5 bits (132), Expect = 1e-08
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
            +P+        +  + ++ DG ++ S + D T  +W    G  L    GH   V   D 
Sbjct: 361 GKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK 106
           S D  +L +GS+D T +LW+++T   L + +F    + +     D 
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLKT--SLKSVSFSPDGKVLASKSSDL 464

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80
          G+ L T +GH G V     S D   L +GS D T ++W+
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 41 NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80
          +GE L T +GH G V     S D   L +GS D T KLW+
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
            GH   +TS+A + DG+   +GS D + ++WD
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
            GH   +TS+A + DG +  +GS D + KLWD
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
           GE +  LKG  G +    + P  + + S  +D  +++WD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
           G+ +  LKG  G +    + P    + S  +D  VR+WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 163 SAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
           SAG D +V +WD E GK       E    H   ITSL    DGS   T S DK   + D 
Sbjct: 143 SAGADMVVNVWDVERGKA-----VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDP 197

Query: 221 R 221
           R
Sbjct: 198 R 198

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG2096	420	consensus WD40 repeat protein [General function pr	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.98
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.98
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1273	405	consensus WD40 repeat protein [General function pr	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.87
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.86
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.86
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.86
KOG0649	325	consensus WD40 repeat protein [General function pr	99.86
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.86
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
PRK01742	429	tolB translocation protein TolB; Provisional	99.85
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG1963	792	consensus WD40 repeat protein [General function pr	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG1963	792	consensus WD40 repeat protein [General function pr	99.83
KOG1310	758	consensus WD40 repeat protein [General function pr	99.83
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.81
PRK03629	429	tolB translocation protein TolB; Provisional	99.81
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.8
PRK04922	433	tolB translocation protein TolB; Provisional	99.79
COG2319	466	FOG: WD40 repeat [General function prediction only	99.79
PRK05137	435	tolB translocation protein TolB; Provisional	99.79
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.79
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.79
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.78
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
PRK02889	427	tolB translocation protein TolB; Provisional	99.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.77
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.77
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.76
PRK02889	427	tolB translocation protein TolB; Provisional	99.76
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.76
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.76
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.76
PRK05137	435	tolB translocation protein TolB; Provisional	99.75
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.75
PRK03629	429	tolB translocation protein TolB; Provisional	99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.75
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.73
PRK04922	433	tolB translocation protein TolB; Provisional	99.73
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.73
KOG2139	445	consensus WD40 repeat protein [General function pr	99.72
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.71
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.71
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.7
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.7
PRK01029	428	tolB translocation protein TolB; Provisional	99.69
KOG4227	609	consensus WD40 repeat protein [General function pr	99.69
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.69
KOG2139	445	consensus WD40 repeat protein [General function pr	99.69
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.68
KOG2321	703	consensus WD40 repeat protein [General function pr	99.68
PRK00178	430	tolB translocation protein TolB; Provisional	99.68
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.67
KOG1334	559	consensus WD40 repeat protein [General function pr	99.67
PRK04792	448	tolB translocation protein TolB; Provisional	99.66
KOG2315	566	consensus Predicted translation initiation factor	99.66
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.65
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.64
KOG1310	758	consensus WD40 repeat protein [General function pr	99.64
PRK00178	430	tolB translocation protein TolB; Provisional	99.64
PRK01029	428	tolB translocation protein TolB; Provisional	99.63
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.62
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.61
PRK04792	448	tolB translocation protein TolB; Provisional	99.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.6
KOG4547	541	consensus WD40 repeat-containing protein [General	99.59
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.56
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.56
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.54
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.53
COG4946	668	Uncharacterized protein related to the periplasmic	99.5
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.5
KOG1334	559	consensus WD40 repeat protein [General function pr	99.49
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.48
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.48
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.47
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.44
PRK04043	419	tolB translocation protein TolB; Provisional	99.43
KOG2315	566	consensus Predicted translation initiation factor	99.42
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.41
PRK04043	419	tolB translocation protein TolB; Provisional	99.4
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.39
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.39
KOG2314	698	consensus Translation initiation factor 3, subunit	99.38
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.38
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.37
KOG2314	698	consensus Translation initiation factor 3, subunit	99.36
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.35
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.35
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.33
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.33
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.33
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.32
COG4946	668	Uncharacterized protein related to the periplasmic	99.3
KOG4547	541	consensus WD40 repeat-containing protein [General	99.25
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.25
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.24
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.22
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.22
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.21
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.21
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.12
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.12
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.11
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.1
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.1
KOG2695	425	consensus WD40 repeat protein [General function pr	99.1
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.09
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.09
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.07
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.05
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.05
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.04
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.03
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.03
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.02
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.96
KOG2695	425	consensus WD40 repeat protein [General function pr	98.94
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.94
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.93
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.93
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.93
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.92
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.89
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.87
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.86
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.86
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.79
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.79
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.77
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.77
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.76
PRK02888	635	nitrous-oxide reductase; Validated	98.75
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.72
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.71
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.7
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.7
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.69
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.64
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.63
PRK02888	635	nitrous-oxide reductase; Validated	98.61
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.6
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.57
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.54
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.52
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.48
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.47
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.47
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.45
COG3391	381	Uncharacterized conserved protein [Function unknow	98.44
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.43
KOG3621	726	consensus WD40 repeat-containing protein [General	98.43
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.43
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.42
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.41
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.39
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.38
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.37
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.36
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.33
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.29
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.24
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.23
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.17
COG3391	381	Uncharacterized conserved protein [Function unknow	98.16
PRK13616	591	lipoprotein LpqB; Provisional	98.13
KOG3621	726	consensus WD40 repeat-containing protein [General	98.12
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.1
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.07
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.07
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.05
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.01
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.01
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.98
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.95
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.94
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.92
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.91
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.9
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.86
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.86
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.85
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.85
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.84
PRK13616	591	lipoprotein LpqB; Provisional	97.8
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.79
KOG2395	644	consensus Protein involved in vacuole import and d	97.75
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.55
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.54
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.52
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.44
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.39
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.37
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.35
KOG2395	644	consensus Protein involved in vacuole import and d	97.34
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.26
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.22
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.15
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.15
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.14
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.13
COG5167	776	VID27 Protein involved in vacuole import and degra	97.11
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.08
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.07
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.01
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.92
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.9
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.83
KOG2444	238	consensus WD40 repeat protein [General function pr	96.78
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.76
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.7
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.6
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.58
PHA03098	534	kelch-like protein; Provisional	96.54
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.49
KOG2444	238	consensus WD40 repeat protein [General function pr	96.49
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.47
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.46
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.45
PHA02713	557	hypothetical protein; Provisional	96.39
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	96.34
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.33
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.29
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.2
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.12
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.08
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.04
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.94
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.87
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	95.86
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.85
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.81
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.74
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.72
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.72
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.55
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.54
PHA02713	557	hypothetical protein; Provisional	95.38
PRK13684	334	Ycf48-like protein; Provisional	95.18
PHA03098	534	kelch-like protein; Provisional	95.16
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.14
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.08
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.07
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.99
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	94.98
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.83
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.81
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.75
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.74
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.66
PRK10115	686	protease 2; Provisional	94.63
COG4590	733	ABC-type uncharacterized transport system, permeas	94.51
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.5
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	94.48
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.47
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.23
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.21
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.2
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.16
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.08
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.05
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.03
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	93.51
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	93.36
PHA02790	480	Kelch-like protein; Provisional	93.29
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.25
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.23
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.95
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.92
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.59
KOG2247	615	consensus WD40 repeat-containing protein [General	92.53
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.25
KOG2247	615	consensus WD40 repeat-containing protein [General	92.16
PRK13684	334	Ycf48-like protein; Provisional	92.1
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.09
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.02
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.77
COG5167	776	VID27 Protein involved in vacuole import and degra	91.58
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.53
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.33
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	90.7
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.52
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.25
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.19
COG5276	370	Uncharacterized conserved protein [Function unknow	90.17
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	89.46
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	89.15
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	88.83
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.6
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	88.55
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	88.28
PF14727	418	PHTB1_N: PTHB1 N-terminus	88.17
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.11
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.94
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	87.85
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	87.45
COG4590	733	ABC-type uncharacterized transport system, permeas	87.42
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	87.25
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.75
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	86.72
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.99
KOG3616	1636	consensus Selective LIM binding factor [Transcript	85.45
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.01
KOG3611	737	consensus Semaphorins [Signal transduction mechani	84.98
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	84.64
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	84.33
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	84.03
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	83.86
PHA02790	480	Kelch-like protein; Provisional	82.81
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	82.66
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	82.53
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	81.24
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	81.15
COG1520	370	FOG: WD40-like repeat [Function unknown]	80.83
PLN02193	470	nitrile-specifier protein	80.6
PRK10115	686	protease 2; Provisional	80.15

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.9e-46  Score=278.72  Aligned_cols=281  Identities=22%  Similarity=0.354  Sum_probs=234.4

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.||.++|.|+.|+|+|+.|++|+.|.++|+||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||.+++
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg  189 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG  189 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEE-e-eCCCceEEEEec-----CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           85 AQLFTF-N-FDSPARSVDFAV-----GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        85 ~~~~~~-~-~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      +++-.- . |...|.+++|.|     ..+.++.++.     ++.+.+|++.      .+..+..+.+|..+|+|++|-.+
T Consensus       190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~sk-----Dg~vrIWd~~------~~~~~~~lsgHT~~VTCvrwGG~  258 (480)
T KOG0271|consen  190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSK-----DGSVRIWDTK------LGTCVRTLSGHTASVTCVRWGGE  258 (480)
T ss_pred             CcccccccCcccceeEEeecccccCCCccceecccC-----CCCEEEEEcc------CceEEEEeccCccceEEEEEcCC
Confidence            876543 3 888999999987     4556666654     7788888875      34688899999999999999754


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeecc---------------------------------------------------
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESDK---------------------------------------------------  186 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------------------------------------  186 (305)
                      | +|++|+.|++|++|+...|...+.+..                                                   
T Consensus       259 g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e  337 (480)
T KOG0271|consen  259 G-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE  337 (480)
T ss_pred             c-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence            4 799999999999999876554332211                                                   


Q ss_pred             -------------------------ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEe
Q 021925          187 -------------------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM  240 (305)
Q Consensus       187 -------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~  240 (305)
                                               ..+|..-|+.+.|+||++++|+++.|..|++||.++|+.+.+|+ |-.+|..++|
T Consensus       338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw  417 (480)
T KOG0271|consen  338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW  417 (480)
T ss_pred             eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence                                     23688899999999999999999999999999999999999999 9999999999


Q ss_pred             cCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhcccccccccccc----cccccCCCCceEEEEE
Q 021925          241 SPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASRKYIYD----DLLNFDAGPQHFIFYF  302 (305)
Q Consensus       241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  302 (305)
                      +.|.++|++|+.|..     +++|+.....+.+.+-...+..|-.+    --..-..+.+..++.+
T Consensus       418 saDsRLlVS~SkDsT-----LKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  418 SADSRLLVSGSKDST-----LKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             ccCccEEEEcCCCce-----EEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence            999999999999998     77777777777666665555444331    1222334455555443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-44  Score=256.66  Aligned_cols=277  Identities=51%  Similarity=0.831  Sum_probs=257.8

Q ss_pred             CCceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925            1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus         1 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      |||+.|+||+.+++.+.++.+|.+|.+++.|.+..+|-..+|+.+.++.+|.+.|+|++...+.+++++|+.|.++++||
T Consensus         1 mrpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    1 MRPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD   80 (327)
T ss_pred             CCccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence            89999999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             cCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC-CCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA-DQGGESVLILKGPQGRINRAVWGPLNR  159 (305)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (305)
                      +++|+++..++.+.+|..+.|++++++++...+..+.....+.+.++..... ....++...+..+.+.++.+.|.|-++
T Consensus        81 v~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   81 VETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             cCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            9999999999999999999999999999999999999999999999886653 334566888999999999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEE
Q 021925          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT  239 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~  239 (305)
                      +|++|.+||.|.+||+++++......  ..|...|+.++++||..++++++.|.+-++||.++.+.++++....||++.+
T Consensus       161 ~ii~Ghe~G~is~~da~~g~~~v~s~--~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa  238 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDARTGKELVDSD--EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA  238 (327)
T ss_pred             EEEEecCCCcEEEEEcccCceeeech--hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence            99999999999999999986554432  2688899999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhccccc
Q 021925          240 MSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSA  279 (305)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (305)
                      ++|....++.|++...+.+.+..-....++.+++++...+
T Consensus       239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eE  278 (327)
T KOG0643|consen  239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEE  278 (327)
T ss_pred             cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHH
Confidence            9999999999999999999999988888999998876533

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-45  Score=278.73  Aligned_cols=243  Identities=21%  Similarity=0.305  Sum_probs=225.9

Q ss_pred             eEecccccceEEEEEcCC--CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925            4 ILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      .+|.||.+.|.++.|+|.  +..+|||+.||++++|++++..++..+.+|...|..++|+|+|++|+|++.|.+-++||+
T Consensus       211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~  290 (459)
T KOG0272|consen  211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDL  290 (459)
T ss_pred             EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccc
Confidence            468999999999999995  679999999999999999998999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           82 ETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        82 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      +++..+.... |...|.+++|.++|.++++++-     +....+|++.      .+.++..+.+|..+|.++.|+|+|..
T Consensus       291 ~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl-----D~~~RvWDlR------tgr~im~L~gH~k~I~~V~fsPNGy~  359 (459)
T KOG0272|consen  291 ETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL-----DSLGRVWDLR------TGRCIMFLAGHIKEILSVAFSPNGYH  359 (459)
T ss_pred             ccchhhHhhcccccccceeEecCCCceeeccCc-----cchhheeecc------cCcEEEEecccccceeeEeECCCceE
Confidence            9998776665 8999999999999999999874     5666778875      56889999999999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  238 (305)
                      ||||+.|++++|||++..+.+..+.   +|..-|+.+.|+| .|.+|+|++.|+++++|..++..+++++. |+..|-++
T Consensus       360 lATgs~Dnt~kVWDLR~r~~ly~ip---AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~  436 (459)
T KOG0272|consen  360 LATGSSDNTCKVWDLRMRSELYTIP---AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL  436 (459)
T ss_pred             EeecCCCCcEEEeeecccccceecc---cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEE
Confidence            9999999999999999999988887   8999999999998 78899999999999999999999999998 99999999


Q ss_pred             EecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925          239 TMSPLLDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                      +++|+++.+++++-|..     +++|.
T Consensus       437 Dis~d~~~i~t~s~DRT-----~KLW~  458 (459)
T KOG0272|consen  437 DISPDSQAIATSSFDRT-----IKLWR  458 (459)
T ss_pred             EeccCCceEEEeccCce-----eeecc
Confidence            99999999999999987     66663

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.3e-44  Score=268.62  Aligned_cols=249  Identities=24%  Similarity=0.366  Sum_probs=209.2

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee-EEecCCCcceEEEEEcC-----CCcEEEEEeCCCcEE
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSR-----DSMTLITGSADQTAK   77 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~i~~~~-----~~~~l~s~~~dg~v~   77 (305)
                      .+.+||...|.|++|+|||+.||+|+.||+|++||..+|+++ ..+.+|...|++++|.|     ..++|++++.||.++
T Consensus       151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr  230 (480)
T KOG0271|consen  151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR  230 (480)
T ss_pred             eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence            357899999999999999999999999999999999988765 67899999999999976     567999999999999


Q ss_pred             EEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEE-------------EEEe----------------
Q 021925           78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH-------------VKRI----------------  127 (305)
Q Consensus        78 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~----------------  127 (305)
                      |||+..++++..+. |..+|+|+.|--++.+...+-+..+.++....             +..+                
T Consensus       231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t  310 (480)
T KOG0271|consen  231 IWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT  310 (480)
T ss_pred             EEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence            99999998888877 88899999987655444443332222111100             0000                


Q ss_pred             --------------------------------------ecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925          128 --------------------------------------ARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (305)
Q Consensus       128 --------------------------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  169 (305)
                                                            .........+++..+.+|...|+.+.||||++++|+++-|..
T Consensus       311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS  390 (480)
T KOG0271|consen  311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS  390 (480)
T ss_pred             cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence                                                  000001223456677899999999999999999999999999


Q ss_pred             EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEE
Q 021925          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVC  248 (305)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~  248 (305)
                      |++||.++|+.+..++   +|-..|..++|+.|.++|++|+.|.++++||+++.+....+. |...|.++.|+|||..++
T Consensus       391 VkLW~g~tGk~lasfR---GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~  467 (480)
T KOG0271|consen  391 VKLWDGRTGKFLASFR---GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA  467 (480)
T ss_pred             eeeeeCCCcchhhhhh---hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence            9999999999999998   899999999999999999999999999999999999998888 999999999999999999


Q ss_pred             EeeCCcE
Q 021925          249 IGEPQTI  255 (305)
Q Consensus       249 ~~~~~~~  255 (305)
                      +|+.|..
T Consensus       468 sggkdkv  474 (480)
T KOG0271|consen  468 SGGKDKV  474 (480)
T ss_pred             cCCCceE
Confidence            9998887

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.2e-44  Score=271.11  Aligned_cols=255  Identities=24%  Similarity=0.313  Sum_probs=228.1

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEEEecCCCC
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      |-+.+|..+.|++|++.|+||+.+|.+++|+.++...+.++.+|.+.|.++.|+|.  +..++||+.||++++|++.+..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            56789999999999999999999999999999999999999999999999999995  6789999999999999999988


Q ss_pred             eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      ++..+. |...|..++|+|+|+++.+++-     +..-.+|++..      .......++|...|.+++|+|||..+++|
T Consensus       253 ~l~~l~gH~~RVs~VafHPsG~~L~Tasf-----D~tWRlWD~~t------k~ElL~QEGHs~~v~~iaf~~DGSL~~tG  321 (459)
T KOG0272|consen  253 PLQDLEGHLARVSRVAFHPSGKFLGTASF-----DSTWRLWDLET------KSELLLQEGHSKGVFSIAFQPDGSLAATG  321 (459)
T ss_pred             chhhhhcchhhheeeeecCCCceeeeccc-----ccchhhccccc------chhhHhhcccccccceeEecCCCceeecc
Confidence            888887 8899999999999999999863     55666666643      35566678999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC-
Q 021925          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP-  242 (305)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-  242 (305)
                      +.|..-+|||+++++++..+.   +|..+|.+++|+|+|..|||||.|++++|||++..+++.++. |..-|+.|.|+| 
T Consensus       322 GlD~~~RvWDlRtgr~im~L~---gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~  398 (459)
T KOG0272|consen  322 GLDSLGRVWDLRTGRCIMFLA---GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQ  398 (459)
T ss_pred             CccchhheeecccCcEEEEec---ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEeccc
Confidence            999999999999999999998   899999999999999999999999999999999999988888 889999999999 


Q ss_pred             CCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhccccccc
Q 021925          243 LLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASR  281 (305)
Q Consensus       243 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (305)
                      .|.+|++|+.|+.     +++|....-.....+.+.+.+
T Consensus       399 ~g~fL~TasyD~t-----~kiWs~~~~~~~ksLaGHe~k  432 (459)
T KOG0272|consen  399 EGYFLVTASYDNT-----VKIWSTRTWSPLKSLAGHEGK  432 (459)
T ss_pred             CCeEEEEcccCcc-----eeeecCCCcccchhhcCCccc
Confidence            7888999999998     666666555555555555443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-41  Score=241.40  Aligned_cols=253  Identities=23%  Similarity=0.315  Sum_probs=221.8

Q ss_pred             EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcC-----CCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFAD-----NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v   78 (305)
                      ++++|.+.|+.++..+. ...+++++.|.++.+|++.     .|.+++.+.+|+..|..+..++||++.++++.|+++++
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl   89 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL   89 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence            58899999999999986 5688999999999999875     36788999999999999999999999999999999999


Q ss_pred             EecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc--CCCeeEEEEc
Q 021925           79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--QGRINRAVWG  155 (305)
Q Consensus        79 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~  155 (305)
                      ||+.+++....+. |...|.+++++++++.++.++.     +..+.+|++..       .+......+  .+.|.++.|+
T Consensus        90 WDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr-----DkTiklwnt~g-------~ck~t~~~~~~~~WVscvrfs  157 (315)
T KOG0279|consen   90 WDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR-----DKTIKLWNTLG-------VCKYTIHEDSHREWVSCVRFS  157 (315)
T ss_pred             EEecCCcEEEEEEecCCceEEEEecCCCceeecCCC-----cceeeeeeecc-------cEEEEEecCCCcCcEEEEEEc
Confidence            9999998888877 8889999999999999999876     66677777642       333333333  7889999999


Q ss_pred             CC--CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC
Q 021925          156 PL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (305)
Q Consensus       156 ~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  233 (305)
                      |+  ..+|++++.|++|++||+++.+....+.   +|.+.++.+++||||...++|+.||.+.+||++.++.+..+.+..
T Consensus       158 P~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~---gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~  234 (315)
T KOG0279|consen  158 PNESNPIIVSASWDKTVKVWNLRNCQLRTTFI---GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD  234 (315)
T ss_pred             CCCCCcEEEEccCCceEEEEccCCcchhhccc---cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC
Confidence            98  6799999999999999999988888777   899999999999999999999999999999999999999999999


Q ss_pred             CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhcccc
Q 021925          234 PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCS  278 (305)
Q Consensus       234 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (305)
                      .|.+++|+|+.-.|+.+.+.+      +++|++........+.-.
T Consensus       235 ~v~sl~fspnrywL~~at~~s------IkIwdl~~~~~v~~l~~d  273 (315)
T KOG0279|consen  235 IVNSLCFSPNRYWLCAATATS------IKIWDLESKAVVEELKLD  273 (315)
T ss_pred             eEeeEEecCCceeEeeccCCc------eEEEeccchhhhhhcccc
Confidence            999999999998898888777      677777666665554443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.3e-40  Score=237.61  Aligned_cols=257  Identities=18%  Similarity=0.257  Sum_probs=222.7

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ++|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++.+.-....|..++|+|.|+++|+|+.|+...||++.+
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~  128 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST  128 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence            46999999999999999999999999999999999998888888888889999999999999999999999999999985


Q ss_pred             C--C----eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           84 G--A----QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        84 ~--~----~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      .  +    ....+. +.+.+.++.|.+++.++..+++      ....+|++      +.++.+..+.+|.+.|.+++++|
T Consensus       129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD------~TCalWDi------e~g~~~~~f~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD------MTCALWDI------ETGQQTQVFHGHTGDVMSLSLSP  196 (343)
T ss_pred             ccccccceeeeeecCccceeEEEEEcCCCceEecCCC------ceEEEEEc------ccceEEEEecCCcccEEEEecCC
Confidence            5  2    222233 7888999999997777766664      44556666      45688899999999999999999


Q ss_pred             -CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee---C
Q 021925          157 -LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---E  232 (305)
Q Consensus       157 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~  232 (305)
                       +++.+++|+-|+..++||++.+.+++.+.   +|+..|+++.|.|+|.-+++|+.|++.++||++..+.+..+.+   .
T Consensus       197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~---ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~  273 (343)
T KOG0286|consen  197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFE---GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII  273 (343)
T ss_pred             CCCCeEEecccccceeeeeccCcceeEeec---ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence             89999999999999999999999999998   8999999999999999999999999999999999999998884   4


Q ss_pred             CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhcccccc
Q 021925          233 RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSAS  280 (305)
Q Consensus       233 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (305)
                      .+|++++||..|++|++|..|..     ..+|+.......-.+..+.+
T Consensus       274 ~gitSv~FS~SGRlLfagy~d~~-----c~vWDtlk~e~vg~L~GHeN  316 (343)
T KOG0286|consen  274 CGITSVAFSKSGRLLFAGYDDFT-----CNVWDTLKGERVGVLAGHEN  316 (343)
T ss_pred             CCceeEEEcccccEEEeeecCCc-----eeEeeccccceEEEeeccCC
Confidence            57999999999999999977776     66777655555444444433

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-39  Score=234.21  Aligned_cols=239  Identities=20%  Similarity=0.293  Sum_probs=204.9

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.||...|..+..++||++.++++.|+++++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|++|++|+....
T Consensus        58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~  137 (315)
T KOG0279|consen   58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV  137 (315)
T ss_pred             eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999998755


Q ss_pred             CeeEEEee--CCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           85 AQLFTFNF--DSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        85 ~~~~~~~~--~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      ........  ...|.|+.|+|.  +.+++.++.     +..+++|++..      .+....+.+|.+.++.+.+||||..
T Consensus       138 ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~-----DktvKvWnl~~------~~l~~~~~gh~~~v~t~~vSpDGsl  206 (315)
T KOG0279|consen  138 CKYTIHEDSHREWVSCVRFSPNESNPIIVSASW-----DKTVKVWNLRN------CQLRTTFIGHSGYVNTVTVSPDGSL  206 (315)
T ss_pred             EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC-----CceEEEEccCC------cchhhccccccccEEEEEECCCCCE
Confidence            44433333  678999999998  455555543     67788888853      3566778899999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee---------
Q 021925          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---------  231 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------  231 (305)
                      .++|+.||.+.+||++.++.+..+.    +...|.+++|+|+.-.|+.+. +..|+|||+.++..+..+..         
T Consensus       207 casGgkdg~~~LwdL~~~k~lysl~----a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~  281 (315)
T KOG0279|consen  207 CASGGKDGEAMLWDLNEGKNLYSLE----AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKA  281 (315)
T ss_pred             EecCCCCceEEEEEccCCceeEecc----CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccccccc
Confidence            9999999999999999999988885    899999999999976666555 55599999999988877651         


Q ss_pred             -CCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925          232 -ERPVNAVTMSPLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       232 -~~~v~~~~~~~~~~~l~~~~~~~~~~~~  259 (305)
                       +....+++|+++|..|++|-.++.+.++
T Consensus       282 ~~~~clslaws~dG~tLf~g~td~~irv~  310 (315)
T KOG0279|consen  282 GDPICLSLAWSADGQTLFAGYTDNVIRVW  310 (315)
T ss_pred             CCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence             1224678999999999999888874433

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.5e-39  Score=250.58  Aligned_cols=241  Identities=26%  Similarity=0.481  Sum_probs=215.2

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      ..|++++|+.+|..||+|+.||.++||+. +|..+.++..|+++|.++.|+.+|.+|++++.||++.+||..+++..+.+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f  314 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF  314 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence            57999999999999999999999999995 58888999999999999999999999999999999999999999999998


Q ss_pred             eeCCCc-eEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925           91 NFDSPA-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (305)
Q Consensus        91 ~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  169 (305)
                      .....+ ..+.|..+..+.....+      +.+.+..+.      ...++..+.+|.++|.++.|+|.+.+|++++.|++
T Consensus       315 ~~~s~~~lDVdW~~~~~F~ts~td------~~i~V~kv~------~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T  382 (524)
T KOG0273|consen  315 EFHSAPALDVDWQSNDEFATSSTD------GCIHVCKVG------EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT  382 (524)
T ss_pred             eeccCCccceEEecCceEeecCCC------ceEEEEEec------CCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence            855555 78999988888877764      344455443      34678888999999999999999999999999999


Q ss_pred             EEEEeCCCCcEeeeeccccCCccceEEEEEcCCC---------CEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEE
Q 021925          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADG---------SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT  239 (305)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~  239 (305)
                      ++||++........+.   .|...|..+.|+|.|         ..+++++.|++|++||+..+.++..+. |..+|.+++
T Consensus       383 lkiWs~~~~~~~~~l~---~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva  459 (524)
T KOG0273|consen  383 LKIWSMGQSNSVHDLQ---AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA  459 (524)
T ss_pred             eEeeecCCCcchhhhh---hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE
Confidence            9999999888888887   899999999999964         469999999999999999999999995 999999999


Q ss_pred             ecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          240 MSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      |+|+|+++++|+-++.     +.+|+.....+.
T Consensus       460 fS~~g~ylAsGs~dg~-----V~iws~~~~~l~  487 (524)
T KOG0273|consen  460 FSPNGRYLASGSLDGC-----VHIWSTKTGKLV  487 (524)
T ss_pred             ecCCCcEEEecCCCCe-----eEeccccchhee
Confidence            9999999999999998     777777666655

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.7e-40  Score=269.35  Aligned_cols=244  Identities=22%  Similarity=0.364  Sum_probs=217.1

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC-------------------------------eeeEEecCCCcc
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-------------------------------ERLGTYRGHNGA   54 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~-------------------------------~~~~~~~~~~~~   54 (305)
                      +..-...++|..|++|++.||.|-.|..|++|.+...                               ....++.+|.++
T Consensus       374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP  453 (707)
T KOG0263|consen  374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP  453 (707)
T ss_pred             EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence            3344567999999999999999999999999987621                               123346789999


Q ss_pred             eEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC
Q 021925           55 VWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD  133 (305)
Q Consensus        55 v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (305)
                      |.+..|+|+.++|+++|.|+++++|.+.+..++..++ +..+|..+.|+|-|.++++++.     +....+|....    
T Consensus       454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~-----D~tArLWs~d~----  524 (707)
T KOG0263|consen  454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH-----DQTARLWSTDH----  524 (707)
T ss_pred             eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC-----Cceeeeeeccc----
Confidence            9999999999999999999999999999999988888 8889999999999999999976     44445565543    


Q ss_pred             CCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC
Q 021925          134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK  213 (305)
Q Consensus       134 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  213 (305)
                        ..+.+.+.+|.+.+.|+.|+|+..|+++|+.|.+|++||..+|..++.+.   +|.++|++++|+|+|++|++|+.||
T Consensus       525 --~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~---GH~~~V~al~~Sp~Gr~LaSg~ed~  599 (707)
T KOG0263|consen  525 --NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT---GHKGPVTALAFSPCGRYLASGDEDG  599 (707)
T ss_pred             --CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec---CCCCceEEEEEcCCCceEeecccCC
Confidence              47888999999999999999999999999999999999999999999997   8999999999999999999999999


Q ss_pred             eEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          214 SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       214 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      .|.+||+.+++++.++. |.+.|.++.|+.+|..||+|+.|..     +.+|++..
T Consensus       600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns-----V~lWD~~~  650 (707)
T KOG0263|consen  600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS-----VRLWDLTK  650 (707)
T ss_pred             cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe-----EEEEEchh
Confidence            99999999999998887 8889999999999999999999987     66665543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.5e-38  Score=225.31  Aligned_cols=229  Identities=21%  Similarity=0.361  Sum_probs=200.9

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ..+.+|++.|+++.|..+|+.+++|++||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+.+
T Consensus        77 ~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~  155 (311)
T KOG0315|consen   77 ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE  155 (311)
T ss_pred             eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence            3689999999999999999999999999999999999876666665 889999999999999999999999999999998


Q ss_pred             CCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           84 GAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        84 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      ..+...+-  ....+.++...|+|.+++.+.+     .+...+|++.........+++.+++.|.+.+..+.+||++++|
T Consensus       156 ~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn-----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  156 NSCTHELIPEDDTSIQSLTVMPDGSMLAAANN-----KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             CccccccCCCCCcceeeEEEcCCCcEEEEecC-----CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence            76655544  5568899999999999999876     5667778887766667778899999999999999999999999


Q ss_pred             EEeeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEE
Q 021925          162 ISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT  239 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~  239 (305)
                      ++++.|.+++||+..+. +....+.   +|...+..++||.||.+|++|+.|+.+++||++.++.++.+. |..+..|++
T Consensus       231 at~ssdktv~iwn~~~~~kle~~l~---gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~  307 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDDFFKLELVLT---GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA  307 (311)
T ss_pred             EeecCCceEEEEecCCceeeEEEee---cCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence            99999999999999887 4444444   899999999999999999999999999999999999999887 555556665


Q ss_pred             ec
Q 021925          240 MS  241 (305)
Q Consensus       240 ~~  241 (305)
                      ..
T Consensus       308 ln  309 (311)
T KOG0315|consen  308 LN  309 (311)
T ss_pred             ee
Confidence            43

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.9e-38  Score=258.64  Aligned_cols=205  Identities=29%  Similarity=0.543  Sum_probs=193.4

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ..+.||.++|..+.|+|+.++|+++++|++||+|.+.+...+..+++|..+|+++.|+|.|-++||+|.|++-++|....
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~  524 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH  524 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      .++...+. +-+.+.|+.|+|+..++++++.     +..+++|+..      .+..++.+.+|.++|.+++|||+|++|+
T Consensus       525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs-----D~tVRlWDv~------~G~~VRiF~GH~~~V~al~~Sp~Gr~La  593 (707)
T KOG0263|consen  525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSS-----DRTVRLWDVS------TGNSVRIFTGHKGPVTALAFSPCGRYLA  593 (707)
T ss_pred             CCchhhhcccccccceEEECCcccccccCCC-----CceEEEEEcC------CCcEEEEecCCCCceEEEEEcCCCceEe
Confidence            88888877 8889999999999999999976     6778888875      4567999999999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      +|+.||.|.+||+.+++.+..+.   +|.+.|.++.|+.+|..||+|+.|.+|++||+..
T Consensus       594 Sg~ed~~I~iWDl~~~~~v~~l~---~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  594 SGDEDGLIKIWDLANGSLVKQLK---GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ecccCCcEEEEEcCCCcchhhhh---cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            99999999999999999999888   8999999999999999999999999999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=217.01  Aligned_cols=251  Identities=16%  Similarity=0.212  Sum_probs=212.2

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      +++..++.|+.+...|+++.||+++ .-.||+||+.++.  ++.++.+|...|+.+.|..+|+.+++||+||+++|||++
T Consensus        35 Tiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR  113 (311)
T KOG0315|consen   35 TIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR  113 (311)
T ss_pred             EEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence            4555677899999999999999887 5589999998865  688999999999999999999999999999999999999


Q ss_pred             CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      ...+...+++..+|.++..+|+..-++++..     .+.+.+|++....-.     ...+......|.++...|+|.+++
T Consensus       114 ~~~~qR~~~~~spVn~vvlhpnQteLis~dq-----sg~irvWDl~~~~c~-----~~liPe~~~~i~sl~v~~dgsml~  183 (311)
T KOG0315|consen  114 SLSCQRNYQHNSPVNTVVLHPNQTELISGDQ-----SGNIRVWDLGENSCT-----HELIPEDDTSIQSLTVMPDGSMLA  183 (311)
T ss_pred             CcccchhccCCCCcceEEecCCcceEEeecC-----CCcEEEEEccCCccc-----cccCCCCCcceeeEEEcCCCcEEE
Confidence            9888888999999999999999888888876     778889988754211     122233456789999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcE---eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eEEEEEe-eCCCeeE
Q 021925          163 SAGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNA  237 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~  237 (305)
                      .+...|..++|++-+.+.   +..+.....|+..+..+.+|||+++||++|.|.+++||+.++. +....+. |+..++.
T Consensus       184 a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWd  263 (311)
T KOG0315|consen  184 AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWD  263 (311)
T ss_pred             EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEe
Confidence            999999999999976432   2222333489999999999999999999999999999999988 4445555 7789999


Q ss_pred             EEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925          238 VTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
                      ++||.||++|++|++|..     .++|+......
T Consensus       264 c~FS~dg~YlvTassd~~-----~rlW~~~~~k~  292 (311)
T KOG0315|consen  264 CAFSADGEYLVTASSDHT-----ARLWDLSAGKE  292 (311)
T ss_pred             eeeccCccEEEecCCCCc-----eeecccccCce
Confidence            999999999999999987     78888766553

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.9e-36  Score=217.52  Aligned_cols=238  Identities=21%  Similarity=0.330  Sum_probs=212.2

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC------eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      ....|..++|+|.|+++|+|+.|+...||++.+.      ...+.+.+|.+.+.|+.|.+|+ .|++++.|.+..+||++
T Consensus        96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie  174 (343)
T KOG0286|consen   96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIE  174 (343)
T ss_pred             CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcc
Confidence            3567889999999999999999999999998854      3456788999999999999855 78999999999999999


Q ss_pred             CCCeeEEEe-eCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           83 TGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      +++.+..+. |.+.|.++.++| +++.++.++-     +....+|+++      .+...+.+.+|.+.|++++|.|+|.-
T Consensus       175 ~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c-----D~~aklWD~R------~~~c~qtF~ghesDINsv~ffP~G~a  243 (343)
T KOG0286|consen  175 TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC-----DKSAKLWDVR------SGQCVQTFEGHESDINSVRFFPSGDA  243 (343)
T ss_pred             cceEEEEecCCcccEEEEecCCCCCCeEEeccc-----ccceeeeecc------CcceeEeecccccccceEEEccCCCe
Confidence            999999998 899999999999 7777777654     5666777775      35789999999999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEE
Q 021925          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT  239 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~  239 (305)
                      +++|+.|++.++||++..+.+..+... ....+|++++||..|++|++|..|.++.+||.-.++.+..+. |+.+|.|+.
T Consensus       244 fatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~  322 (343)
T KOG0286|consen  244 FATGSDDATCRLYDLRADQELAVYSHD-SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLG  322 (343)
T ss_pred             eeecCCCceeEEEeecCCcEEeeeccC-cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEE
Confidence            999999999999999999998888632 456789999999999999999999999999999999998888 999999999


Q ss_pred             ecCCCCcEEEeeCCcEEEEEEeehh
Q 021925          240 MSPLLDHVCIGEPQTIKFMLLVYLF  264 (305)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~~~~~~  264 (305)
                      .+|||..+++|+-|..     +++|
T Consensus       323 ~s~DG~av~TgSWDs~-----lriW  342 (343)
T KOG0286|consen  323 VSPDGMAVATGSWDST-----LRIW  342 (343)
T ss_pred             ECCCCcEEEecchhHh-----eeec
Confidence            9999999999998876     5555

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-37  Score=230.87  Aligned_cols=237  Identities=22%  Similarity=0.355  Sum_probs=216.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      .|+||++.|.+++|+..|+++|+++.|-.+++||.++ .++++.+.+|+..|.++.|-|.|.++++++.|.+|+.|++.+
T Consensus       145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t  224 (406)
T KOG0295|consen  145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT  224 (406)
T ss_pred             hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc
Confidence            4889999999999999999999999999999999887 567788889999999999999999999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC-----
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-----  157 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----  157 (305)
                      +.++.++. ++..+..+..+.||.+++.++.     +..+.+|....      .++...+..|.-+|.+++|-|.     
T Consensus       225 g~cv~t~~~h~ewvr~v~v~~DGti~As~s~-----dqtl~vW~~~t------~~~k~~lR~hEh~vEci~wap~~~~~~  293 (406)
T KOG0295|consen  225 GYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-----DQTLRVWVVAT------KQCKAELREHEHPVECIAWAPESSYPS  293 (406)
T ss_pred             ceeEEeccCchHhEEEEEecCCeeEEEecCC-----CceEEEEEecc------chhhhhhhccccceEEEEecccccCcc
Confidence            99999998 7788999999999999999886     66777777643      3456678899999999999763     


Q ss_pred             ----------CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925          158 ----------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (305)
Q Consensus       158 ----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  227 (305)
                                +.++.+++.|++|++||+.++.++.++.   +|...|..++|+|.|++|+++..|+++++||++++++++
T Consensus       294 i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~---ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk  370 (406)
T KOG0295|consen  294 ISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV---GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK  370 (406)
T ss_pred             hhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe---cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence                      2589999999999999999999999998   899999999999999999999999999999999999999


Q ss_pred             EEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          228 TYV-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       228 ~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      .+. |+.-+++++|+.+..++++|+-+-.
T Consensus       371 ~~~ah~hfvt~lDfh~~~p~VvTGsVdqt  399 (406)
T KOG0295|consen  371 TLEAHEHFVTSLDFHKTAPYVVTGSVDQT  399 (406)
T ss_pred             ccCCCcceeEEEecCCCCceEEeccccce
Confidence            998 8888999999999999999987765

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.4e-36  Score=245.23  Aligned_cols=242  Identities=20%  Similarity=0.321  Sum_probs=209.5

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      ..+||...+++++++|||+++|||+.||.|+|||..++-+..++..|+..|+.+.|+..|+.+++++.||+|+.||+...
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEeeCCCc--eEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           85 AQLFTFNFDSPA--RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        85 ~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      +...++..+.++  .|++..|.|.++++++.+    .-.+.+|..      +.++.+..+.+|.++|.+++|+|.+..|+
T Consensus       425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d----~F~IfvWS~------qTGqllDiLsGHEgPVs~l~f~~~~~~La  494 (893)
T KOG0291|consen  425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQD----SFEIFVWSV------QTGQLLDILSGHEGPVSGLSFSPDGSLLA  494 (893)
T ss_pred             ceeeeecCCCceeeeEEEEcCCCCEEEeeccc----eEEEEEEEe------ecCeeeehhcCCCCcceeeEEccccCeEE
Confidence            999998866654  577888889998888753    335566666      45688899999999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-----------
Q 021925          163 SAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-----------  230 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------  230 (305)
                      +++.|.+|++||+-.. ..+.+++    +...+..++|+|+|+.|++++.||.|.+||.+.+..+..+.           
T Consensus       495 S~SWDkTVRiW~if~s~~~vEtl~----i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~  570 (893)
T KOG0291|consen  495 SGSWDKTVRIWDIFSSSGTVETLE----IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKE  570 (893)
T ss_pred             eccccceEEEEEeeccCceeeeEe----eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccc
Confidence            9999999999998654 3555664    77889999999999999999999999999998766553332           


Q ss_pred             ----------eCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925          231 ----------TERPVNAVTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       231 ----------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                                .....+.+++++||..|++|+..+....+.
T Consensus       571 ~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~  610 (893)
T KOG0291|consen  571 TDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD  610 (893)
T ss_pred             cceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence                      124578999999999999998888744333

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.8e-38  Score=240.58  Aligned_cols=241  Identities=19%  Similarity=0.303  Sum_probs=212.5

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCC-cceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      .+++|..+|+++.|+++|.++++|+.+|.|++|+.. ...++.+.+|. ..|++++|+|+...+++++.||+|+|||...
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~  211 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM  211 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence            478999999999999999999999999999999865 44455566555 8999999999889999999999999999988


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      .+....+. +.-.|.+++|+|...++++++.     +..+++|+.      ..+.++..+.+|+..|..+.|+|++++|+
T Consensus       212 ~kee~vL~GHgwdVksvdWHP~kgLiasgsk-----DnlVKlWDp------rSg~cl~tlh~HKntVl~~~f~~n~N~Ll  280 (464)
T KOG0284|consen  212 PKEERVLRGHGWDVKSVDWHPTKGLIASGSK-----DNLVKLWDP------RSGSCLATLHGHKNTVLAVKFNPNGNWLL  280 (464)
T ss_pred             CchhheeccCCCCcceeccCCccceeEEccC-----CceeEeecC------CCcchhhhhhhccceEEEEEEcCCCCeeE
Confidence            87777776 7788999999999999999887     346666666      45678888999999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEE
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVT  239 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~  239 (305)
                      +++.|..++++|+++.+.+..++   +|...|+++.|+| ...+|.+|+.||.|..|.+...+++..+.  |...|++++
T Consensus       281 t~skD~~~kv~DiR~mkEl~~~r---~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~  357 (464)
T KOG0284|consen  281 TGSKDQSCKVFDIRTMKELFTYR---GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLA  357 (464)
T ss_pred             EccCCceEEEEehhHhHHHHHhh---cchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeee
Confidence            99999999999999888888887   8999999999999 56688999999999999998777777766  889999999


Q ss_pred             ecCCCCcEEEeeCCcEEEEEE
Q 021925          240 MSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~~  260 (305)
                      |+|-|..|++|+.|....++.
T Consensus       358 ~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  358 YHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             ccccceeEeecCCCcceeeec
Confidence            999999999998888754443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.7e-35  Score=220.37  Aligned_cols=244  Identities=18%  Similarity=0.332  Sum_probs=218.3

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ..+..|+++|.+++.+|+.++++||+.|..-.+|++.+++....+.+|++.|+++.|+.+|.+||||+.+|.|+||+..+
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st  137 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST  137 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      +.....+. .-..+.=+.|+|.+.+++.++.     ++.+-.|.+..      ....+.+.+|..++++-.|.|+|+.++
T Consensus       138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~-----DGsvWmw~ip~------~~~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGST-----DGSVWMWQIPS------QALCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             CceEEEeecccCceEEEEecccccEEEeecC-----CCcEEEEECCC------cceeeEecCCCCCcccccccCCCceEE
Confidence            99888886 5667788999999999998876     55555666542      266788999999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeecc--------------------------------------------------------
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDK--------------------------------------------------------  186 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~--------------------------------------------------------  186 (305)
                      ++..||+|++||+.+++++..+..                                                        
T Consensus       207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~  286 (399)
T KOG0296|consen  207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD  286 (399)
T ss_pred             EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence            999999999999999988766441                                                        


Q ss_pred             ------------------------------------ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          187 ------------------------------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       187 ------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                                                          .-.|..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.
T Consensus       287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~  365 (399)
T KOG0296|consen  287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT  365 (399)
T ss_pred             hhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe
Confidence                                                113678899999988 6799999999999999999999999998


Q ss_pred             -eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925          231 -TERPVNAVTMSPLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       231 -~~~~v~~~~~~~~~~~l~~~~~~~~~~~~  259 (305)
                       |..+|.+++++|+.+++++++.|+...++
T Consensus       366 GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF  395 (399)
T KOG0296|consen  366 GHQMGILDFALSPQKRLVVTVSDDNTALVF  395 (399)
T ss_pred             cCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence             99999999999999999999999875544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=3e-36  Score=216.14  Aligned_cols=248  Identities=17%  Similarity=0.192  Sum_probs=210.6

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE--EecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEe
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG--TYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWN   80 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~--~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd   80 (305)
                      ..+++|.+.|.+++|+.+|..|++|+.|+++.+|+++..+...  ...+|.+.|-.++|+| +...+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4578999999999999999999999999999999998775544  3457999999999998 567899999999999999


Q ss_pred             cCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEee------------------------------cc
Q 021925           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA------------------------------RD  130 (305)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~  130 (305)
                      ++++++...+.....-..+.|+|++.+++++........-..+.....                              ..
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I  173 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI  173 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence            999999999998888889999999999888765221111110000000                              00


Q ss_pred             cCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe
Q 021925          131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS  210 (305)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  210 (305)
                      ......+++..++.|.....|+.|+|+|+++|+|+.|..+.+||+..--+++.+.   .+.-+|+.+.|+.||++||++|
T Consensus       174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~dg~~lASaS  250 (313)
T KOG1407|consen  174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHDGRMLASAS  250 (313)
T ss_pred             EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec---cccCceEEEEeccCcceeeccC
Confidence            0012457788889999999999999999999999999999999999888888887   6889999999999999999999


Q ss_pred             CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925          211 LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       211 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      +|..|-|=++++|..+..+.+.++...++|+|...+||-++++.
T Consensus       251 EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  251 EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCC
Confidence            99999999999999999999999999999999999999887665

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.1e-36  Score=225.17  Aligned_cols=236  Identities=21%  Similarity=0.312  Sum_probs=216.4

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      +++||.+.|.|+++.|-.+++++|+.|++++|||+.+|+...++.+|-..|..+++++...++.+++.|+.|+.||++..
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n  225 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN  225 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      +.+..+. +-+.|.+++..|.-..+++++.     +..+++|+++..      ..+..+.+|..+|.++.+.|-...+++
T Consensus       226 kvIR~YhGHlS~V~~L~lhPTldvl~t~gr-----Dst~RvWDiRtr------~~V~~l~GH~~~V~~V~~~~~dpqvit  294 (460)
T KOG0285|consen  226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGR-----DSTIRVWDIRTR------ASVHVLSGHTNPVASVMCQPTDPQVIT  294 (460)
T ss_pred             hhHHHhccccceeEEEeccccceeEEecCC-----cceEEEeeeccc------ceEEEecCCCCcceeEEeecCCCceEE
Confidence            9988877 8889999999999999998876     677888998643      578899999999999999999999999


Q ss_pred             eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~  242 (305)
                      |+.|++|++||++.++....+.   .|...|.+++.+|....+|+++.|. |+-|++..+..+..+. +..-+++++...
T Consensus       295 ~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~ns  370 (460)
T KOG0285|consen  295 GSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNS  370 (460)
T ss_pred             ecCCceEEEeeeccCceeEeee---cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeecc
Confidence            9999999999999999888887   7999999999999999999999875 9999999999888876 777889999998


Q ss_pred             CCCcEEEeeCCcEE
Q 021925          243 LLDHVCIGEPQTIK  256 (305)
Q Consensus       243 ~~~~l~~~~~~~~~  256 (305)
                      |+ ++++|++++.+
T Consensus       371 D~-v~~~G~dng~~  383 (460)
T KOG0285|consen  371 DG-VLVSGGDNGSI  383 (460)
T ss_pred             Cc-eEEEcCCceEE
Confidence            87 66777777663

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.2e-37  Score=237.79  Aligned_cols=245  Identities=22%  Similarity=0.376  Sum_probs=211.1

Q ss_pred             eEecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCC-CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925            4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      .++.||+..|+++.|.| .+.+|++++.|+.|+||++.+ +++++++.+|..+|.+++|+++|..++|+|.|+.|++||+
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence            36889999999999999 899999999999999999876 8899999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEeeCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           82 ETGAQLFTFNFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      ++|+++..+.....+.|+.|.|++ +.++++..     +..+..|+++.      ++.++.+..|-+.|..+.|-++|++
T Consensus       288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~s-----d~ki~~wDiRs------~kvvqeYd~hLg~i~~i~F~~~g~r  356 (503)
T KOG0282|consen  288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGS-----DKKIRQWDIRS------GKVVQEYDRHLGAILDITFVDEGRR  356 (503)
T ss_pred             ccceEEEEEecCCCceeeecCCCCCcEEEEecC-----CCcEEEEeccc------hHHHHHHHhhhhheeeeEEccCCce
Confidence            999999999999999999999998 55555544     56677777753      4567778889999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCcEeeeecc-------------------------------------------ccCCc--cceE
Q 021925          161 IISAGEDAIVRIWDTETGKLLKESDK-------------------------------------------ETGHK--KTIT  195 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------------~~~~~--~~v~  195 (305)
                      +++.+.|+.++||+.+...+++.+..                                           ..+|.  +.-.
T Consensus       357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~  436 (503)
T KOG0282|consen  357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC  436 (503)
T ss_pred             EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence            99999999999999886544332110                                           11332  4456


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCc-EEEeeCCcEEEEEEeehh
Q 021925          196 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDH-VCIGEPQTIKFMLLVYLF  264 (305)
Q Consensus       196 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~  264 (305)
                      .+.|||||.+|++|+.||.+.+||.++-+.+..+. |..++..+.|+|.... +|+|+-+|.     +++|
T Consensus       437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~-----Ikiw  502 (503)
T KOG0282|consen  437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGL-----IKIW  502 (503)
T ss_pred             eEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCce-----eEec
Confidence            78999999999999999999999999999999998 7799999999998764 677777776     5665

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-34  Score=207.40  Aligned_cols=241  Identities=20%  Similarity=0.341  Sum_probs=201.6

Q ss_pred             ceEecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCC---eeeEEe-cCCCcceEEEEEcCCCcEEEEEeCCCcEE
Q 021925            3 PILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG---ERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~---~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~v~   77 (305)
                      ...+++|++.+..++|+|- |..||+|+.|+.|++|+...+   .+...+ .+|+..|.+++|+|.|++|+++|.|.++.
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            3468999999999999997 889999999999999998743   333334 36999999999999999999999999999


Q ss_pred             EEecCCC--CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925           78 LWNVETG--AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (305)
Q Consensus        78 vwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (305)
                      ||.-..+  +++..+. +...|.+++|+++|.++++++.     +..+-+|.+.   .....+....+++|...|..+.|
T Consensus        87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR-----DKSVWiWe~d---eddEfec~aVL~~HtqDVK~V~W  158 (312)
T KOG0645|consen   87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR-----DKSVWIWEID---EDDEFECIAVLQEHTQDVKHVIW  158 (312)
T ss_pred             EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC-----CCeEEEEEec---CCCcEEEEeeeccccccccEEEE
Confidence            9976544  5666666 8899999999999999999986     4455566655   33556788999999999999999


Q ss_pred             cCCCCEEEEeeCCCcEEEEeCCC---CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925          155 GPLNRTIISAGEDAIVRIWDTET---GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (305)
Q Consensus       155 ~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  231 (305)
                      +|....|++++.|.+|++|+-..   ..+++++.   +|...|.+++|++.|..|++++.|++++||...+.   -...+
T Consensus       159 HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~---g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~  232 (312)
T KOG0645|consen  159 HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD---GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMH  232 (312)
T ss_pred             cCCcceeEEeccCCeEEEEeecCCCCeeEEEEec---CccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhc
Confidence            99999999999999999998762   45677776   88899999999999999999999999999987622   11226


Q ss_pred             CCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925          232 ERPVNAVTMSPLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       232 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~  259 (305)
                      ..++..++|.  ...|+++++|+.+.++
T Consensus       233 sr~~Y~v~W~--~~~IaS~ggD~~i~lf  258 (312)
T KOG0645|consen  233 SRALYDVPWD--NGVIASGGGDDAIRLF  258 (312)
T ss_pred             ccceEeeeec--ccceEeccCCCEEEEE
Confidence            7789999999  4578888888775444

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.7e-35  Score=225.41  Aligned_cols=242  Identities=21%  Similarity=0.345  Sum_probs=219.7

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      +|..|+++|.++.|+.+|++|++++.||++.+||..+++..+.+.-|..+-.++.|-.+. .+++++.|+.|+|+.+...
T Consensus       271 tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~  349 (524)
T KOG0273|consen  271 TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGED  349 (524)
T ss_pred             hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCC
Confidence            467899999999999999999999999999999999999999999999988899998654 7899999999999999988


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-----
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-----  158 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----  158 (305)
                      .++.++. |.++|.++.|.|.+.+++.+++     +..+++|....      ......+..|...|..+.|+|.|     
T Consensus       350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd-----D~TlkiWs~~~------~~~~~~l~~Hskei~t~~wsp~g~v~~n  418 (524)
T KOG0273|consen  350 RPVKTFIGHHGEVNALKWNPTGSLLASCSD-----DGTLKIWSMGQ------SNSVHDLQAHSKEIYTIKWSPTGPVTSN  418 (524)
T ss_pred             CcceeeecccCceEEEEECCCCceEEEecC-----CCeeEeeecCC------CcchhhhhhhccceeeEeecCCCCccCC
Confidence            8888887 8999999999999999999987     67777877643      35667789999999999999975     


Q ss_pred             ----CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCC
Q 021925          159 ----RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP  234 (305)
Q Consensus       159 ----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  234 (305)
                          ..+++++.|++|++||+..+.++..+.   .|..+|.+++|+|+|+++|+|+.||.|.+|+.++++.++.+.....
T Consensus       419 ~~~~~~l~sas~dstV~lwdv~~gv~i~~f~---kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~  495 (524)
T KOG0273|consen  419 PNMNLMLASASFDSTVKLWDVESGVPIHTLM---KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG  495 (524)
T ss_pred             CcCCceEEEeecCCeEEEEEccCCceeEeec---cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe
Confidence                379999999999999999999999987   7999999999999999999999999999999999999999998888


Q ss_pred             eeEEEecCCCCcEEEeeCCcEEEEEEe
Q 021925          235 VNAVTMSPLLDHVCIGEPQTIKFMLLV  261 (305)
Q Consensus       235 v~~~~~~~~~~~l~~~~~~~~~~~~~~  261 (305)
                      |..++|+.+|..|.++-.++...+..+
T Consensus       496 Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  496 IFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            999999999999999988887655443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.5e-37  Score=233.56  Aligned_cols=240  Identities=22%  Similarity=0.375  Sum_probs=207.9

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      -+.+|..+.|.|+|+.|++|+..|...+|+..+......+++|.++|.++.|++++.+++||+.+|.|++|+........
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            35679999999999999999999999999976555555667899999999999999999999999999999976544333


Q ss_pred             EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925           89 TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (305)
Q Consensus        89 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  167 (305)
                      ... +...|++++|+|.+..++++++     ++.+.+|+....      +....+.+|.-.|.+++|+|....+++|+.|
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~Sd-----Dg~ikiWdf~~~------kee~vL~GHgwdVksvdWHP~kgLiasgskD  243 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSD-----DGTIKIWDFRMP------KEERVLRGHGWDVKSVDWHPTKGLIASGSKD  243 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecC-----CCeEEEEeccCC------chhheeccCCCCcceeccCCccceeEEccCC
Confidence            333 5589999999999988888887     677888887643      4556679999999999999999999999999


Q ss_pred             CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCc
Q 021925          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDH  246 (305)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  246 (305)
                      ..|++||.++++++.++.   +|...|..+.|+|++++|+++|.|..++++|+++.+.+..++ |...|+++.|+|-..-
T Consensus       244 nlVKlWDprSg~cl~tlh---~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~  320 (464)
T KOG0284|consen  244 NLVKLWDPRSGSCLATLH---GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES  320 (464)
T ss_pred             ceeEeecCCCcchhhhhh---hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc
Confidence            999999999999999998   899999999999999999999999999999999999999888 9999999999997665


Q ss_pred             -EEEeeCCcEEEEEEee
Q 021925          247 -VCIGEPQTIKFMLLVY  262 (305)
Q Consensus       247 -l~~~~~~~~~~~~~~~  262 (305)
                       +.+|+.|+....+.+.
T Consensus       321 lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  321 LFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             ceeeccCCCceEEEecc
Confidence             5556777765544444

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.9e-34  Score=225.47  Aligned_cols=248  Identities=22%  Similarity=0.347  Sum_probs=203.1

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec---CCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR---GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      .++.|..-|+|+.|+|||+.+|+++.||.+.+||-.+++.+..+.   +|++.|.+++|+||++.+++++.|.+++|||+
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV  264 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV  264 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence            467899999999999999999999999999999999999999998   89999999999999999999999999999999


Q ss_pred             CCCCeeEEEeeCCCce----EEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           82 ETGAQLFTFNFDSPAR----SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        82 ~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      .+.+++.++.....+.    .+.|. .+.++.+..++.+.+.      +.      ....+...+.+|...|+++..+|+
T Consensus       265 s~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~l------n~------~d~~~~~~i~GHnK~ITaLtv~~d  331 (603)
T KOG0318|consen  265 STNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYL------NP------SDPSVLKVISGHNKSITALTVSPD  331 (603)
T ss_pred             eccceEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEe------cc------cCCChhheecccccceeEEEEcCC
Confidence            9999999998665543    33344 5555555544333222      22      233477889999999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeee-----------ecc----------------------------------------
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKE-----------SDK----------------------------------------  186 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~-----------~~~----------------------------------------  186 (305)
                      +++|++|+.||.|.-||..++..-+.           +..                                        
T Consensus       332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l  411 (603)
T KOG0318|consen  332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL  411 (603)
T ss_pred             CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence            99999999999999999876532211           000                                        


Q ss_pred             -----------------------------------------------------------------------ccCCccceE
Q 021925          187 -----------------------------------------------------------------------ETGHKKTIT  195 (305)
Q Consensus       187 -----------------------------------------------------------------------~~~~~~~v~  195 (305)
                                                                                             ...|.++++
T Consensus       412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT  491 (603)
T KOG0318|consen  412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAIT  491 (603)
T ss_pred             EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCce
Confidence                                                                                   124778999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE-Ee-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925          196 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKT-YV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       196 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                      +++++||+.+||++...+.+.+||..+.+.... +. |...|++++|+|+..++|+|+-|...+++.+.-..
T Consensus       492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~  563 (603)
T KOG0318|consen  492 DVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA  563 (603)
T ss_pred             EEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence            999999999999999999999999998876332 22 89999999999999999999999986666655443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.7e-35  Score=214.40  Aligned_cols=251  Identities=23%  Similarity=0.386  Sum_probs=207.4

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcC-CCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      .+.||++.|+.+.|+|+|.++|+|+.|..|.+|+.. .-+....+++|+++|..+.|.+|++.+++++.|.+|+.||.++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            478999999999999999999999999999999953 3455677889999999999999999999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      |+....++ +..-+..+....-|..++.+..    -+..+++|+++......       ....+.+++++.|...+..+.
T Consensus       122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgs----dD~t~kl~D~R~k~~~~-------t~~~kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGS----DDGTLKLWDIRKKEAIK-------TFENKYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             ceeeehhccccceeeecCccccCCeEEEecC----CCceEEEEeecccchhh-------ccccceeEEEEEeccccccee
Confidence            99999888 6666777775555655555442    26778888887532211       122355788999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----eEEEEEe---eC--C
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYV---TE--R  233 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~---~~--~  233 (305)
                      +|+-|+.|++||++.+.....+.   +|..+|+.+..+|+|.++.+-+.|.++++||++..    +++..+.   |.  .
T Consensus       191 sggIdn~ikvWd~r~~d~~~~ls---Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek  267 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKNDGLYTLS---GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK  267 (338)
T ss_pred             eccccCceeeeccccCcceEEee---cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence            99999999999999999999888   99999999999999999999999999999999853    4466665   22  2


Q ss_pred             CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhh
Q 021925          234 PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYN  274 (305)
Q Consensus       234 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (305)
                      ....++|+|+++.+.+|+.|..     +++|+......+|.
T Consensus       268 nlL~cswsp~~~~i~ags~dr~-----vyvwd~~~r~~lyk  303 (338)
T KOG0265|consen  268 NLLKCSWSPNGTKITAGSADRF-----VYVWDTTSRRILYK  303 (338)
T ss_pred             hcceeeccCCCCccccccccce-----EEEeecccccEEEE
Confidence            3467799999999999999987     67776655444443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.2e-35  Score=206.55  Aligned_cols=248  Identities=23%  Similarity=0.363  Sum_probs=219.4

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ..|..|.++|.++.|+-+|++.++++.|.+|++|+...+.+++++.+|..+|..++.+.|...+++|+.|+.+.+||+.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      |+....+. |..+|..++|+.+...++.++     ++..++.|+-+.    ...++++.+......|.++...  +..|+
T Consensus        91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs-----fD~s~r~wDCRS----~s~ePiQildea~D~V~Si~v~--~heIv  159 (307)
T KOG0316|consen   91 GKVDRRFRGHLAQVNTVRFNEESSVVASGS-----FDSSVRLWDCRS----RSFEPIQILDEAKDGVSSIDVA--EHEIV  159 (307)
T ss_pred             CeeeeecccccceeeEEEecCcceEEEecc-----ccceeEEEEccc----CCCCccchhhhhcCceeEEEec--ccEEE
Confidence            99999998 899999999999999998876     477788888765    3457889999999999999887  56799


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCC--CeeEEE
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TER--PVNAVT  239 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~--~v~~~~  239 (305)
                      +|+.||+++.||++.|+....+.     ..+|+++.|+++++..+.++.|+++++.|-.+|+.++.+. |..  .-...+
T Consensus       160 aGS~DGtvRtydiR~G~l~sDy~-----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~  234 (307)
T KOG0316|consen  160 AGSVDGTVRTYDIRKGTLSSDYF-----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC  234 (307)
T ss_pred             eeccCCcEEEEEeecceeehhhc-----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence            99999999999999998776653     5689999999999999999999999999999999999887 333  235667


Q ss_pred             ecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          240 MSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      ++....+++.|+.||.     ++.|++..+...
T Consensus       235 l~qsdthV~sgSEDG~-----Vy~wdLvd~~~~  262 (307)
T KOG0316|consen  235 LNQSDTHVFSGSEDGK-----VYFWDLVDETQI  262 (307)
T ss_pred             ecccceeEEeccCCce-----EEEEEeccceee
Confidence            8888889999999998     667776655544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.8e-34  Score=239.37  Aligned_cols=235  Identities=24%  Similarity=0.439  Sum_probs=206.5

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEc-CCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      .+.+|...|++++|+|+++++++++.|++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|++||+++
T Consensus       198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~  277 (456)
T KOG0266|consen  198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT  277 (456)
T ss_pred             cccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence            35799999999999999999999999999999999 55689999999999999999999999999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC--eeEEEEcCCCCE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR--INRAVWGPLNRT  160 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~  160 (305)
                      ++++..+. +...+.+++|++++..+++++.     ++.+.+|+.......    ....+.++...  +++++|+|++++
T Consensus       278 ~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-----d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~  348 (456)
T KOG0266|consen  278 GECVRKLKGHSDGISGLAFSPDGNLLVSASY-----DGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKY  348 (456)
T ss_pred             CeEEEeeeccCCceEEEEECCCCCEEEEcCC-----CccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcE
Confidence            99999998 8889999999999999999864     677788887643211    34455555554  999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCcEeeeeccccCCcc---ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-e-CCCe
Q 021925          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T-ERPV  235 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~-~~~v  235 (305)
                      +++++.|+.+++||++.+..+..+.   +|..   .+.+...++.+.++++|+.|+.|++||+.++..+..+. | ...+
T Consensus       349 ll~~~~d~~~~~w~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~  425 (456)
T KOG0266|consen  349 LLSASLDRTLKLWDLRSGKSVGTYT---GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAV  425 (456)
T ss_pred             EEEecCCCeEEEEEccCCcceeeec---ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCce
Confidence            9999999999999999999888887   4544   44455567899999999999999999999988888887 6 6888


Q ss_pred             eEEEecCCCCcEEEee
Q 021925          236 NAVTMSPLLDHVCIGE  251 (305)
Q Consensus       236 ~~~~~~~~~~~l~~~~  251 (305)
                      ..++++|..+++++++
T Consensus       426 ~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  426 SDLSSHPTENLIASSS  441 (456)
T ss_pred             eccccCCCcCeeeecC
Confidence            9999999999999987

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-35  Score=221.23  Aligned_cols=246  Identities=23%  Similarity=0.279  Sum_probs=219.9

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.||..+|+.+-|+|+-..+++++.|++|++||..+++....+++|.+.|.++.|+..|++|++++.|=.+++||.++.
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~  182 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF  182 (406)
T ss_pred             hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999863


Q ss_pred             -CeeEEE-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           85 -AQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        85 -~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                       +++... .+...+.++.|-|.+..++.++.     +..+..|+..      .+.++..+.+|...+..++.+.||..++
T Consensus       183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr-----D~tik~We~~------tg~cv~t~~~h~ewvr~v~v~~DGti~A  251 (406)
T KOG0295|consen  183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSR-----DNTIKAWECD------TGYCVKTFPGHSEWVRMVRVNQDGTIIA  251 (406)
T ss_pred             HHHHHHhcCcccceeeEEEEecCCeeeeccc-----ccceeEEecc------cceeEEeccCchHhEEEEEecCCeeEEE
Confidence             333333 37888999999999999988875     6667777774      4578899999999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC---------------CCEEEEEeCCCeEEEEEcCCceEEE
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD---------------GSHFLTGSLDKSAKLWDARTLELIK  227 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~  227 (305)
                      +++.|.+|++|-+.++++...+.   .|+.+|-+++|.|.               ++++++++.|++|++||+.++.++.
T Consensus       252 s~s~dqtl~vW~~~t~~~k~~lR---~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~  328 (406)
T KOG0295|consen  252 SCSNDQTLRVWVVATKQCKAELR---EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF  328 (406)
T ss_pred             ecCCCceEEEEEeccchhhhhhh---ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence            99999999999999998877777   79999999999873               3589999999999999999999999


Q ss_pred             EEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925          228 TYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLD  269 (305)
Q Consensus       228 ~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  269 (305)
                      ++. |...|..++|+|.|++|+++.+|+.     +.+|++...
T Consensus       329 tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-----lrvwdl~~~  366 (406)
T KOG0295|consen  329 TLVGHDNWVRGVAFSPGGKYILSCADDKT-----LRVWDLKNL  366 (406)
T ss_pred             EEecccceeeeeEEcCCCeEEEEEecCCc-----EEEEEeccc
Confidence            998 9999999999999999999999998     666666543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.5e-34  Score=236.54  Aligned_cols=256  Identities=27%  Similarity=0.415  Sum_probs=219.1

Q ss_pred             eccc-ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec-
Q 021925            6 MKGH-ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV-   81 (305)
Q Consensus         6 l~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~-   81 (305)
                      +.+| ...|.++.|+++|+.+++++.|+.+++|+..+.+  ....+.+|...|.+++|+|+++++++++.|++|++||+ 
T Consensus       154 ~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  154 LAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             ecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            3344 7889999999999999999999999999998777  77777899999999999999999999999999999999 


Q ss_pred             CCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           82 ETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        82 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      ..+..+.++. |...+.+++|+|+++.++.++.     +..+++|++..      +++...+.+|.+.|++++|++++++
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~-----D~tvriWd~~~------~~~~~~l~~hs~~is~~~f~~d~~~  302 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD-----DGTVRIWDVRT------GECVRKLKGHSDGISGLAFSPDGNL  302 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCCCEEEEecC-----CCcEEEEeccC------CeEEEeeeccCCceEEEEECCCCCE
Confidence            4457778776 9999999999999988888876     78888898864      6889999999999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCc--EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCC---C
Q 021925          161 IISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TER---P  234 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~---~  234 (305)
                      |++++.|+.|++||+.++.  +...+....... +++++.|+|++.++++++.|+.+++||++.++.+..+. +..   .
T Consensus       303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~  381 (456)
T KOG0266|consen  303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRC  381 (456)
T ss_pred             EEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCccee
Confidence            9999999999999999998  456665332333 69999999999999999999999999999999888887 443   4


Q ss_pred             eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhcccc
Q 021925          235 VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCS  278 (305)
Q Consensus       235 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (305)
                      +.+...++.++++++|+.++.     +++|+.........+...
T Consensus       382 ~~~~~~~~~~~~i~sg~~d~~-----v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  382 IFSPTLSTGGKLIYSGSEDGS-----VYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             EecccccCCCCeEEEEeCCce-----EEEEeCCccchhhhhcCC
Confidence            455567889999999999998     677776654444444443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-34  Score=235.10  Aligned_cols=244  Identities=22%  Similarity=0.318  Sum_probs=214.3

Q ss_pred             CceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe----eeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcE
Q 021925            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTA   76 (305)
Q Consensus         2 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v   76 (305)
                      ...++.||++.|.++....+|-+|+||+.|.++++|.++++.    ++....+|...|.+++++..+ .+|+++|.|+++
T Consensus       357 ~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl  436 (775)
T KOG0319|consen  357 YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL  436 (775)
T ss_pred             ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceE
Confidence            345789999999999977788899999999999999885443    455667899999999998754 689999999999


Q ss_pred             EEEecCCCCe---eEEE-------eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC
Q 021925           77 KLWNVETGAQ---LFTF-------NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (305)
Q Consensus        77 ~vwd~~~~~~---~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (305)
                      ++|++...+.   ...+       .|+..|.+++++|+.+++++++.     +...++|++.      .......+.+|.
T Consensus       437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq-----DktaKiW~le------~~~l~~vLsGH~  505 (775)
T KOG0319|consen  437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ-----DKTAKIWDLE------QLRLLGVLSGHT  505 (775)
T ss_pred             EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc-----ccceeeeccc------CceEEEEeeCCc
Confidence            9999876221   1111       27889999999999999999986     6666777775      457788999999


Q ss_pred             CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE
Q 021925          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  226 (305)
                      ..+.++.|+|..+.++|+|.|++|+||.+.+..+++++.   +|...|..+.|-.+|+.|++++.||-|++|++++++++
T Consensus       506 RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e---GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~  582 (775)
T KOG0319|consen  506 RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE---GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE  582 (775)
T ss_pred             cceEEEEeccccceeEeccCCceEEEEEeccceeeeeec---CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence            999999999999999999999999999999999999998   99999999999999999999999999999999999999


Q ss_pred             EEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925          227 KTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       227 ~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~  259 (305)
                      .++. |...|++++.+|.+.++++|++|+..+++
T Consensus       583 ~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  583 MTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             hhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence            9998 99999999999999999999999874433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.2e-33  Score=220.14  Aligned_cols=237  Identities=31%  Similarity=0.494  Sum_probs=207.5

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+++|.++|++++|+|++++|++++.||.+++|++.+++....+..|...+..+.|+|+++.+++++.||.|++||++++
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            46799999999999999999999999999999999998888888899999999999999999999999999999999988


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      +.+..+. +...+.++.+++++.+++++..     .+.+.++++.      ..+....+..|...+.+++|+|+++++++
T Consensus        84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~i~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  152 (289)
T cd00200          84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSR-----DKTIKVWDVE------TGKCLTTLRGHTDWVNSVAFSPDGTFVAS  152 (289)
T ss_pred             cceEEEeccCCcEEEEEEcCCCCEEEEecC-----CCeEEEEECC------CcEEEEEeccCCCcEEEEEEcCcCCEEEE
Confidence            7777776 5568999999999888888762     3445555553      23556667788999999999999999998


Q ss_pred             eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE-eeCCCeeEEEecC
Q 021925          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSP  242 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~  242 (305)
                      ++.||.|++||+++++.+..+.   .|...+.++.|+|+++.+++++.||.|++||+++++.+..+ .+..++.+++|+|
T Consensus       153 ~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  229 (289)
T cd00200         153 SSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP  229 (289)
T ss_pred             EcCCCcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence            8889999999999888887776   67789999999999999999999999999999999998888 4778999999999


Q ss_pred             CCCcEEEeeCCcE
Q 021925          243 LLDHVCIGEPQTI  255 (305)
Q Consensus       243 ~~~~l~~~~~~~~  255 (305)
                      ++.++++++.++.
T Consensus       230 ~~~~~~~~~~~~~  242 (289)
T cd00200         230 DGYLLASGSEDGT  242 (289)
T ss_pred             CCcEEEEEcCCCc
Confidence            9888888775666

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.6e-34  Score=210.03  Aligned_cols=240  Identities=23%  Similarity=0.369  Sum_probs=210.8

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET   83 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~   83 (305)
                      ++++|++.|..+.|.+|++.|++++.|++|+.||.++|+....+++|.+-|+.+.-+.-| .++.+++.||++++||+++
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            578999999999999999999999999999999999999999999999999999855444 4667889999999999999


Q ss_pred             CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      .+.++++..+.++.++.|...+..+.++.     +++.+++|++.+      ......+.+|.+.|+.+..+|+|.++.+
T Consensus       165 k~~~~t~~~kyqltAv~f~d~s~qv~sgg-----Idn~ikvWd~r~------~d~~~~lsGh~DtIt~lsls~~gs~lls  233 (338)
T KOG0265|consen  165 KEAIKTFENKYQLTAVGFKDTSDQVISGG-----IDNDIKVWDLRK------NDGLYTLSGHADTITGLSLSRYGSFLLS  233 (338)
T ss_pred             cchhhccccceeEEEEEecccccceeecc-----ccCceeeecccc------CcceEEeecccCceeeEEeccCCCcccc
Confidence            99999999999999999999888887764     477888998864      3678899999999999999999999999


Q ss_pred             eeCCCcEEEEeCCCCc----EeeeeccccCC--ccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925          164 AGEDAIVRIWDTETGK----LLKESDKETGH--KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN  236 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~----~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~  236 (305)
                      -+.|.++++||++...    ++..++.. .|  +.....++|+|++..+..|+.|..+++||......+..+. |...|+
T Consensus       234 nsMd~tvrvwd~rp~~p~~R~v~if~g~-~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn  312 (338)
T KOG0265|consen  234 NSMDNTVRVWDVRPFAPSQRCVKIFQGH-IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVN  312 (338)
T ss_pred             ccccceEEEEEecccCCCCceEEEeecc-hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEE
Confidence            9999999999998533    34444411 12  2345577899999999999999999999999888888888 888999


Q ss_pred             EEEecCCCCcEEEeeCCcEE
Q 021925          237 AVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~  256 (305)
                      +++|+|..+.|.+++.|...
T Consensus       313 ~~~Fhp~e~iils~~sdk~i  332 (338)
T KOG0265|consen  313 EVDFHPTEPIILSCSSDKTI  332 (338)
T ss_pred             EeeecCCCcEEEEeccCcee
Confidence            99999999999999999874

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-34  Score=231.03  Aligned_cols=255  Identities=16%  Similarity=0.252  Sum_probs=231.4

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+..|...|.++.++|...+++++-.+|.|.||+.++...++.+.-...+|.+..|.+..+.+++|+.|..|+||+..++
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~   87 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG   87 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence            45679999999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEE
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTII  162 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~  162 (305)
                      +.+..+. |+..+++++.+|...+++++++     +..++.|+....     ..+.+.+++|...|.+++|+|.. +.++
T Consensus        88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSD-----Dm~iKlW~we~~-----wa~~qtfeGH~HyVMqv~fnPkD~ntFa  157 (794)
T KOG0276|consen   88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSD-----DMTIKLWDWENE-----WACEQTFEGHEHYVMQVAFNPKDPNTFA  157 (794)
T ss_pred             eeeEEeeccccceeeeeecCCCCeEEecCC-----ccEEEEeeccCc-----eeeeeEEcCcceEEEEEEecCCCcccee
Confidence            9999998 9999999999999999999988     667778887643     36788999999999999999954 7999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC--CEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEE
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG--SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT  239 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~  239 (305)
                      +++-|++|++|.+.+..+..+++   +|...|+++.+-+.|  .+|++|+.|.+++|||..+..+++++. |...|+.+.
T Consensus       158 S~sLDrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~  234 (794)
T KOG0276|consen  158 SASLDRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVF  234 (794)
T ss_pred             eeeccccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEE
Confidence            99999999999999999998888   899999999998844  689999999999999999999999999 888999999


Q ss_pred             ecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhccc
Q 021925          240 MSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYC  277 (305)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (305)
                      |+|.-+.+++|+.||.     +++|....-.+...++.
T Consensus       235 fhp~lpiiisgsEDGT-----vriWhs~Ty~lE~tLn~  267 (794)
T KOG0276|consen  235 FHPELPIIISGSEDGT-----VRIWNSKTYKLEKTLNY  267 (794)
T ss_pred             ecCCCcEEEEecCCcc-----EEEecCcceehhhhhhc
Confidence            9999999999999998     77777655555444433

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.5e-33  Score=200.84  Aligned_cols=236  Identities=21%  Similarity=0.350  Sum_probs=194.2

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC--CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      ++-.+|+..|++++|+|.|++||+|+.|.++.||.-..  .+++.++++|...|.+++|+++|++||+++.|+.|-||.+
T Consensus        55 vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   55 VLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             eccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence            34468999999999999999999999999999997554  3688899999999999999999999999999999999998


Q ss_pred             CCCCe---eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           82 ETGAQ---LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        82 ~~~~~---~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      ..+..   ...++ |...|..+.|+|...+++.++-     ++.++++.-..   ...-...+.+.+|...|.+++|+|.
T Consensus       135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SY-----DnTIk~~~~~~---dddW~c~~tl~g~~~TVW~~~F~~~  206 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSY-----DNTIKVYRDED---DDDWECVQTLDGHENTVWSLAFDNI  206 (312)
T ss_pred             cCCCcEEEEeeeccccccccEEEEcCCcceeEEecc-----CCeEEEEeecC---CCCeeEEEEecCccceEEEEEecCC
Confidence            86644   34444 7888999999999998888763     56666665542   3455788999999999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc------eEEEEE--
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL------ELIKTY--  229 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~--  229 (305)
                      |..|++++.|++++||-..+.     +.  ..|..++..+.|. + ..|++++.|+.|+++.-...      +.+...  
T Consensus       207 G~rl~s~sdD~tv~Iw~~~~~-----~~--~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~  277 (312)
T KOG0645|consen  207 GSRLVSCSDDGTVSIWRLYTD-----LS--GMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEG  277 (312)
T ss_pred             CceEEEecCCcceEeeeeccC-----cc--hhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhc
Confidence            999999999999999987632     11  1477889999998 3 47999999999999976542      122211  


Q ss_pred             eeCCCeeEEEecCC-CCcEEEeeCCcEE
Q 021925          230 VTERPVNAVTMSPL-LDHVCIGEPQTIK  256 (305)
Q Consensus       230 ~~~~~v~~~~~~~~-~~~l~~~~~~~~~  256 (305)
                      .|+..|++++|+|. ...|++|++||..
T Consensus       278 aHe~dVNsV~w~p~~~~~L~s~~DDG~v  305 (312)
T KOG0645|consen  278 AHEVDVNSVQWNPKVSNRLASGGDDGIV  305 (312)
T ss_pred             ccccccceEEEcCCCCCceeecCCCceE
Confidence            27789999999995 6678888888873

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.4e-34  Score=234.45  Aligned_cols=249  Identities=21%  Similarity=0.311  Sum_probs=218.8

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      +.+|.++|+.++|+|++.++++|+.|..|++|+..+.+++.++.+|-+.|..+.|++.-..++|+|.|.+|+||+..+.+
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~  126 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK  126 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC-----------------------CCceEEE
Q 021925           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-----------------------GGESVLI  141 (305)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~  141 (305)
                      ++..+. |...|.|..|+|....++.++     ++..+++|++.......                       ..-..+.
T Consensus       127 ~iavltGHnHYVMcAqFhptEDlIVSaS-----LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V  201 (1202)
T KOG0292|consen  127 CIAVLTGHNHYVMCAQFHPTEDLIVSAS-----LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV  201 (1202)
T ss_pred             eEEEEecCceEEEeeccCCccceEEEec-----ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence            999998 888999999999998888876     47788888875322110                       0112357


Q ss_pred             EeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      +++|+..|+-++|+|.-..+++|+.|..|++|.+...+ ........+|...|.++-|+|....+++.|+|++|++||+.
T Consensus       202 LEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~  280 (1202)
T KOG0292|consen  202 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT  280 (1202)
T ss_pred             ecccccccceEEecCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence            88999999999999999999999999999999987543 33344445899999999999999999999999999999999


Q ss_pred             CceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925          222 TLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       222 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                      ..+.+++++ ...+.+.++-+|..+++++|.+.|.+++..
T Consensus       281 kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl  320 (1202)
T KOG0292|consen  281 KRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL  320 (1202)
T ss_pred             cccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence            999999998 667899999999999999888777664443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5e-34  Score=234.61  Aligned_cols=243  Identities=20%  Similarity=0.326  Sum_probs=198.0

Q ss_pred             ec-ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC--------------------------------C----------
Q 021925            6 MK-GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--------------------------------G----------   42 (305)
Q Consensus         6 l~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~--------------------------------~----------   42 (305)
                      ++ +|.+.|.++.||+||+|||+||+|+.|+||.+..                                .          
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            55 8999999999999999999999999999997654                                0          


Q ss_pred             ------------------eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEec-
Q 021925           43 ------------------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-  103 (305)
Q Consensus        43 ------------------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-  103 (305)
                                        +++..+.+|.+.|.++.|+.++ +|++++.|++|++|++...+++..+.|+.-|+|++|+| 
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence                              1122356899999999999765 89999999999999999999999999999999999999 


Q ss_pred             CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeee
Q 021925          104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE  183 (305)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  183 (305)
                      |.++++.++     +++.+++|.+..       ..+.....-..-|+++++.|+|++.+.|+.+|.+++|+....+....
T Consensus       421 DDryFiSGS-----LD~KvRiWsI~d-------~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  421 DDRYFISGS-----LDGKVRLWSISD-------KKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             CCCcEeecc-----cccceEEeecCc-------CeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence            556666654     588888888854       33444455558899999999999999999999999999987776554


Q ss_pred             ecccc-----CCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEEEecCCCCcEEEeeCCc
Q 021925          184 SDKET-----GHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       184 ~~~~~-----~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      .....     .....|+.+.|.|.. ..+++.+.|..|+|+|.++.+++..++   ....-....|+.||++|++|+.|.
T Consensus       489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence            43211     112389999999844 357888889999999999888888777   223345678999999999999777


Q ss_pred             EEEEEEeehhhh
Q 021925          255 IKFMLLVYLFVL  266 (305)
Q Consensus       255 ~~~~~~~~~~~~  266 (305)
                      .     +++|..
T Consensus       569 ~-----VYiW~~  575 (712)
T KOG0283|consen  569 W-----VYIWKN  575 (712)
T ss_pred             e-----EEEEeC
Confidence            6     677765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.7e-32  Score=215.53  Aligned_cols=237  Identities=29%  Similarity=0.479  Sum_probs=208.4

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|...+..+.|+|+++.+++++.||.|++|++.+++.+..+..|...+.++.|+|+++++++++.||.+.+||++++
T Consensus        46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  125 (289)
T cd00200          46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG  125 (289)
T ss_pred             EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc
Confidence            46789999999999999999999999999999999988888889999999999999999888888888999999999988


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      +....+. +...+.++.++|++.+++++..     .+.+.++++.      ..+....+..|...+.++.|+|+++.+++
T Consensus       126 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~d~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  194 (289)
T cd00200         126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-----DGTIKLWDLR------TGKCVATLTGHTGEVNSVAFSPDGEKLLS  194 (289)
T ss_pred             EEEEEeccCCCcEEEEEEcCcCCEEEEEcC-----CCcEEEEEcc------ccccceeEecCccccceEEECCCcCEEEE
Confidence            8887777 6778999999999888888762     3345555553      23456667788889999999999999999


Q ss_pred             eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~  242 (305)
                      ++.|+.|++||+++++.+..+.   .|...+.++.|+|++.++++++.||.|++||+.+++....+. +...+.+++|+|
T Consensus       195 ~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~  271 (289)
T cd00200         195 SSSDGTIKLWDLSTGKCLGTLR---GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP  271 (289)
T ss_pred             ecCCCcEEEEECCCCceecchh---hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC
Confidence            9999999999999988888775   577899999999998888888889999999999988888877 777899999999


Q ss_pred             CCCcEEEeeCCcE
Q 021925          243 LLDHVCIGEPQTI  255 (305)
Q Consensus       243 ~~~~l~~~~~~~~  255 (305)
                      +++.+++++.++.
T Consensus       272 ~~~~l~~~~~d~~  284 (289)
T cd00200         272 DGKRLASGSADGT  284 (289)
T ss_pred             CCCEEEEecCCCe
Confidence            9999999998886

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-32  Score=223.81  Aligned_cols=238  Identities=20%  Similarity=0.355  Sum_probs=209.0

Q ss_pred             cccceEEEEEcCCCCEEEEeeCC-CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKD-HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~d-g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~   87 (305)
                      -..+|..++|+..|.+||.|+.. |.+-||+.++...+...++|...+++++++|||+++++|+.||+|+|||..++-+.
T Consensus       306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~  385 (893)
T KOG0291|consen  306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF  385 (893)
T ss_pred             ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence            34679999999999999998765 89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-CCCeeEEEEcCCCCEEEEee
Q 021925           88 FTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        88 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~  165 (305)
                      .++. |.+.+..+.|+..++.+++++     +++.++.|++.+.      ...+.+..+ .....+++..|.|..+.+|+
T Consensus       386 vTFteHts~Vt~v~f~~~g~~llssS-----LDGtVRAwDlkRY------rNfRTft~P~p~QfscvavD~sGelV~AG~  454 (893)
T KOG0291|consen  386 VTFTEHTSGVTAVQFTARGNVLLSSS-----LDGTVRAWDLKRY------RNFRTFTSPEPIQFSCVAVDPSGELVCAGA  454 (893)
T ss_pred             EEeccCCCceEEEEEEecCCEEEEee-----cCCeEEeeeeccc------ceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence            9998 899999999999999999875     4788888888654      333344333 34567899999999999999


Q ss_pred             CCC-cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eEEEEEeeCCCeeEEEecCC
Q 021925          166 EDA-IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPL  243 (305)
Q Consensus       166 ~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~  243 (305)
                      .|. .|.+|++++|+.+-.+.   +|+++|.+++|+|++..|+++|.|.+|++||+-.. ..+.++.....+..++|+|+
T Consensus       455 ~d~F~IfvWS~qTGqllDiLs---GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd  531 (893)
T KOG0291|consen  455 QDSFEIFVWSVQTGQLLDILS---GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD  531 (893)
T ss_pred             cceEEEEEEEeecCeeeehhc---CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCC
Confidence            875 79999999999998887   99999999999999999999999999999998644 56677788888999999999


Q ss_pred             CCcEEEeeCCcEEEEEE
Q 021925          244 LDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       244 ~~~l~~~~~~~~~~~~~  260 (305)
                      |+-|++++-+|.+-++.
T Consensus       532 G~elaVaTldgqItf~d  548 (893)
T KOG0291|consen  532 GKELAVATLDGQITFFD  548 (893)
T ss_pred             CCeEEEEEecceEEEEE
Confidence            99999999998844333

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.6e-33  Score=226.81  Aligned_cols=248  Identities=25%  Similarity=0.365  Sum_probs=213.4

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEe-----------------------------------
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-----------------------------------   48 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~-----------------------------------   48 (305)
                      +.+.||+..|.++++|.+...+++|+ .+++++|+..+.++++++                                   
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~  445 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS  445 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence            67889999999999999887777765 679999998877666553                                   


Q ss_pred             -----cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC-----CC--e------eEEEeeCCCceEEEEecCCceEEE
Q 021925           49 -----RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-----GA--Q------LFTFNFDSPARSVDFAVGDKLAVI  110 (305)
Q Consensus        49 -----~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~-----~~--~------~~~~~~~~~v~~~~~~~~~~~~~~  110 (305)
                           ++|.+.|++++.+||++.+++||.|.+|++||..-     +.  .      ..++..+..+.|+.++|+++++++
T Consensus       446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV  525 (888)
T KOG0306|consen  446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV  525 (888)
T ss_pred             hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence                 47999999999999999999999999999999641     11  1      134457889999999999999999


Q ss_pred             eCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCC
Q 021925          111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH  190 (305)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  190 (305)
                      +-     ++..+.++-+.      ..+....+.||.-+|.|+..+||++.++||+.|..|++|-+.-|.+-+.+.   +|
T Consensus       526 sL-----LdnTVkVyflD------tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f---AH  591 (888)
T KOG0306|consen  526 SL-----LDNTVKVYFLD------TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF---AH  591 (888)
T ss_pred             Ee-----ccCeEEEEEec------ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh---cc
Confidence            84     45566665553      335677789999999999999999999999999999999999999999988   89


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925          191 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLD  269 (305)
Q Consensus       191 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  269 (305)
                      ...|.++.|.|....+.+++.|+.|+-||-...+.+..+. |...|+|++.+|+|.++++++.|..     +++|...-+
T Consensus       592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s-----IRlwE~tde  666 (888)
T KOG0306|consen  592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS-----IRLWERTDE  666 (888)
T ss_pred             cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce-----eEeeeccCc
Confidence            9999999999999999999999999999999999999998 8899999999999999999998876     677765444


Q ss_pred             hh
Q 021925          270 IL  271 (305)
Q Consensus       270 ~~  271 (305)
                      ..
T Consensus       667 ~~  668 (888)
T KOG0306|consen  667 IL  668 (888)
T ss_pred             ce
Confidence            33

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-33  Score=215.11  Aligned_cols=252  Identities=20%  Similarity=0.292  Sum_probs=199.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC---eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      +++.|+++|.-+.||++|++||+++.|.+..||++...   +..+++.+|..+|..+.|+||.++|++|+.|..+.+||+
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv  298 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV  298 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence            57899999999999999999999999999999987543   457888999999999999999999999999999999999


Q ss_pred             CCCCeeEEEeeC--CCceEEEEecCCceEEEeCCcceeee-----------eeE---EEEEeecccCCCCCceEEE----
Q 021925           82 ETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELN-----------SAI---HVKRIARDPADQGGESVLI----  141 (305)
Q Consensus        82 ~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~~~----  141 (305)
                      .+|.....+...  ..+.+++|.||+..+++++.+.....           ...   +++++....   .++.+..    
T Consensus       299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~---Dgk~vl~v~~d  375 (519)
T KOG0293|consen  299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITY---DGKYVLLVTVD  375 (519)
T ss_pred             CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcC---CCcEEEEEecc
Confidence            999999888854  88999999999999888876321110           001   122222111   1111111    


Q ss_pred             ---------------EeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccc--eEEEEEcC-CC
Q 021925          142 ---------------LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT--ITSLAKAA-DG  203 (305)
Q Consensus       142 ---------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~-~~  203 (305)
                                     +.....+|++++.|.+++++++.-.+..+++||++..+.++.+.   +|...  +..-+|-. +.
T Consensus       376 ~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~---Ghkq~~fiIrSCFgg~~~  452 (519)
T KOG0293|consen  376 KKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF---GHKQGHFIIRSCFGGGND  452 (519)
T ss_pred             cceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh---cccccceEEEeccCCCCc
Confidence                           22235679999999999999999999999999999888888887   56543  33334443 55


Q ss_pred             CEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCc-EEEeeCCcEEEEEEeehhhhh
Q 021925          204 SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDH-VCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       204 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      .++++||+|+.|+||+..+++++..+. |...|++++|+|..+. +|+|++|+.     +++|...
T Consensus       453 ~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt-----IRIWg~~  513 (519)
T KOG0293|consen  453 KFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT-----IRIWGPS  513 (519)
T ss_pred             ceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe-----EEEecCC
Confidence            799999999999999999999999998 8889999999998765 666777776     7777653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.3e-32  Score=239.47  Aligned_cols=234  Identities=15%  Similarity=0.232  Sum_probs=198.1

Q ss_pred             cccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCe
Q 021925            9 HERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus         9 h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      +...|.+++|+| ++.+|++++.||+|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.||+|++||+++++.
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~  610 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS  610 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence            456799999987 578999999999999999999999999999999999999997 788999999999999999999999


Q ss_pred             eEEEeeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           87 LFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        87 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      +..+.....+.++.|.+ ++..+++++.     ++.+.+|++...     ......+.+|...|.++.|. ++.+|++++
T Consensus       611 ~~~~~~~~~v~~v~~~~~~g~~latgs~-----dg~I~iwD~~~~-----~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s  679 (793)
T PLN00181        611 IGTIKTKANICCVQFPSESGRSLAFGSA-----DHKVYYYDLRNP-----KLPLCTMIGHSKTVSYVRFV-DSSTLVSSS  679 (793)
T ss_pred             EEEEecCCCeEEEEEeCCCCCEEEEEeC-----CCeEEEEECCCC-----CccceEecCCCCCEEEEEEe-CCCEEEEEE
Confidence            88888778899999964 6778877765     567777777532     12455677899999999997 678999999


Q ss_pred             CCCcEEEEeCCCC------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---------
Q 021925          166 EDAIVRIWDTETG------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---------  230 (305)
Q Consensus       166 ~dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------  230 (305)
                      .|+.|++||++.+      +++..+.   +|...+..++|+|++.+|++|+.|+.|++|+.....++..+.         
T Consensus       680 ~D~~ikiWd~~~~~~~~~~~~l~~~~---gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~  756 (793)
T PLN00181        680 TDNTLKLWDLSMSISGINETPLHSFM---GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSG  756 (793)
T ss_pred             CCCEEEEEeCCCCccccCCcceEEEc---CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccc
Confidence            9999999999753      4555555   788999999999999999999999999999987665443322         


Q ss_pred             -----eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          231 -----TERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       231 -----~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                           +...|.+++|+|++..|++|+.++.+
T Consensus       757 ~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I  787 (793)
T PLN00181        757 LEVDDASQFISSVCWRGQSSTLVAANSTGNI  787 (793)
T ss_pred             cccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence                 23458999999999999999999873

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2e-34  Score=213.48  Aligned_cols=242  Identities=21%  Similarity=0.318  Sum_probs=207.5

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec--------CCCcceEEEEEcCCCcEEEEEeCCCcEEEE
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--------GHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~--------~~~~~v~~i~~~~~~~~l~s~~~dg~v~vw   79 (305)
                      |.+..+.|..|+|||++|++|+.||-|.+|+..+|+..+.++        -+.++|.|+.|+.|...|++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            556778899999999999999999999999999987655432        477899999999999999999999999999


Q ss_pred             ecCCCCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           80 NVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        80 d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      .+++|+++..+.  +...|+++.|+.++..++.++.     +..+++..+      ..++....+++|.+.|+...|.++
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf-----D~tvRiHGl------KSGK~LKEfrGHsSyvn~a~ft~d  359 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF-----DQTVRIHGL------KSGKCLKEFRGHSSYVNEATFTDD  359 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccc-----cceEEEecc------ccchhHHHhcCccccccceEEcCC
Confidence            999999999987  8889999999999998887764     344444443      456788889999999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeeccc--------------------------------------------cCCccc
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESDKE--------------------------------------------TGHKKT  193 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------------------------------------~~~~~~  193 (305)
                      |.++++++.||+|++|+.++.+++.++...                                            ....+.
T Consensus       360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGd  439 (508)
T KOG0275|consen  360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGD  439 (508)
T ss_pred             CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCc
Confidence            999999999999999999987766554321                                            012234


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925          194 ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       194 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                      ..+.+.+|.|.++.+.++|+.++.+...+|+...++. |+..+-.++-+|..+.+++-+.|+.     +++|.
T Consensus       440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgl-----lKLWk  507 (508)
T KOG0275|consen  440 FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGL-----LKLWK  507 (508)
T ss_pred             eEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccch-----hhhcC
Confidence            5567789999999999999999999999999999888 8888999999999999999998887     66663

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=3.3e-31  Score=219.32  Aligned_cols=228  Identities=18%  Similarity=0.303  Sum_probs=185.1

Q ss_pred             eEecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcCCC-cEEEEEeCCC
Q 021925            4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQ   74 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg   74 (305)
                      ..+.||.+.|++++|+| ++++|++|+.|++|++||+.++       +++..+.+|...|.+++|+|++ ++|++++.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            45789999999999999 8899999999999999999764       3567889999999999999975 6899999999


Q ss_pred             cEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC-eeEE
Q 021925           75 TAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR-INRA  152 (305)
Q Consensus        75 ~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~  152 (305)
                      +|+|||+++++.+..+. +...+.+++|+|++..+++++.     ++.+.+|++..      ++.+..+.+|.+. ...+
T Consensus       149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~-----Dg~IrIwD~rs------g~~v~tl~~H~~~~~~~~  217 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK-----DKKLNIIDPRD------GTIVSSVEAHASAKSQRC  217 (493)
T ss_pred             EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC-----CCEEEEEECCC------CcEEEEEecCCCCcceEE
Confidence            99999999998887776 7788999999999999988875     56777887743      3566777888765 4567


Q ss_pred             EEcCCCCEEEEee----CCCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEE
Q 021925          153 VWGPLNRTIISAG----EDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELI  226 (305)
Q Consensus       153 ~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~  226 (305)
                      .|.+++..+++++    .|+.|++||+++.. +......  .....+....|++++++|++++ .|+.|++||+.+++++
T Consensus       218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~--d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~  295 (493)
T PTZ00421        218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL--DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT  295 (493)
T ss_pred             EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc--CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence            8999888877654    47899999998754 3332221  2334566678999999998887 5999999999999887


Q ss_pred             EEEe--eCCCeeEEEecCCC
Q 021925          227 KTYV--TERPVNAVTMSPLL  244 (305)
Q Consensus       227 ~~~~--~~~~v~~~~~~~~~  244 (305)
                      ....  ...++..++|.|..
T Consensus       296 ~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        296 FCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             EEeeccCCCCCcceEecccc
Confidence            7654  45677888888854

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-32  Score=218.82  Aligned_cols=237  Identities=20%  Similarity=0.294  Sum_probs=210.2

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-C
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-A   85 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~   85 (305)
                      +-..-||++..|-+..+++++|+.|..|+||+..+++.++.+++|.+.|.+++.+|...+++|+|.|-+|++||.+.+ .
T Consensus        52 eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa  131 (794)
T KOG0276|consen   52 EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA  131 (794)
T ss_pred             eecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee
Confidence            344667888889888899999999999999999999999999999999999999999999999999999999999866 4


Q ss_pred             eeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC--CEE
Q 021925           86 QLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--RTI  161 (305)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l  161 (305)
                      +.+++. |...|.+++|.|.+. .++.+     .++..+++|.+.      ...+...+++|...|+++.+-+.|  .+|
T Consensus       132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~-----sLDrTVKVWslg------s~~~nfTl~gHekGVN~Vdyy~~gdkpyl  200 (794)
T KOG0276|consen  132 CEQTFEGHEHYVMQVAFNPKDPNTFASA-----SLDRTVKVWSLG------SPHPNFTLEGHEKGVNCVDYYTGGDKPYL  200 (794)
T ss_pred             eeeEEcCcceEEEEEEecCCCccceeee-----eccccEEEEEcC------CCCCceeeeccccCcceEEeccCCCcceE
Confidence            555565 888899999999654 44444     357888888884      446778899999999999998865  699


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEe
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM  240 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~  240 (305)
                      ++|+.|..|+|||.++..+++++.   +|...|..+.|+|.=..+++|++||+++||+..+.++..++. ...+++|++-
T Consensus       201 IsgaDD~tiKvWDyQtk~CV~TLe---GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~  277 (794)
T KOG0276|consen  201 ISGADDLTIKVWDYQTKSCVQTLE---GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAA  277 (794)
T ss_pred             EecCCCceEEEeecchHHHHHHhh---cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEee
Confidence            999999999999999999999998   999999999999999999999999999999999999998888 6778999999


Q ss_pred             cCCCCcEEEeeCCcEEE
Q 021925          241 SPLLDHVCIGEPQTIKF  257 (305)
Q Consensus       241 ~~~~~~l~~~~~~~~~~  257 (305)
                      .+.++.+++|.+++...
T Consensus       278 ~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  278 HKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             cCCCCeEEEeccCCcEE
Confidence            99999999998877643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-30  Score=192.63  Aligned_cols=245  Identities=16%  Similarity=0.261  Sum_probs=195.7

Q ss_pred             CCce-EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee----------------------------------
Q 021925            1 MRPI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL----------------------------------   45 (305)
Q Consensus         1 ~~~~-~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~----------------------------------   45 (305)
                      |||- .++.-.+.|+++.|+++|.++++++.|.+++|||..+++.+                                  
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            3443 35566789999999999999999999999999998765443                                  


Q ss_pred             ----------EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcc
Q 021925           46 ----------GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF  115 (305)
Q Consensus        46 ----------~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  115 (305)
                                +.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+.... -..++|.|.|.+++++.+. 
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~-  161 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGS-  161 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCC-
Confidence                      3356999999999999988999999999999999999888776665333 3467899999999998763 


Q ss_pred             eeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceE
Q 021925          116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT  195 (305)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  195 (305)
                          ..+.+++++..... +........+.....+.+.|||+|++|+.++..+.+++.|.-+|.....+........---
T Consensus       162 ----~~IkLyD~Rs~dkg-PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~  236 (311)
T KOG1446|consen  162 ----ELIKLYDLRSFDKG-PFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL  236 (311)
T ss_pred             ----CeEEEEEecccCCC-CceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence                35666666543221 1111112225567889999999999999999999999999999998888875433333336


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeC
Q 021925          196 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       196 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                      ..+|.||++++++|+.||+|.+|++++++.+..+.  +..++.++.|+|....+++++.
T Consensus       237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence            77899999999999999999999999999999988  4788999999999877777654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.9e-31  Score=195.95  Aligned_cols=260  Identities=17%  Similarity=0.262  Sum_probs=200.9

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe------------------------------------eeEEe
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------------------------------------RLGTY   48 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~------------------------------------~~~~~   48 (305)
                      .|+||.+.|++++|+.||++|||++.|++|++|++++..                                    .+..+
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            488999999999999999999999999999999876311                                    01000


Q ss_pred             -----------------------cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecC
Q 021925           49 -----------------------RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVG  104 (305)
Q Consensus        49 -----------------------~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~  104 (305)
                                             +.|.-.+..+-...++++|++++.|..|.+|+++ |+.+..+. ....-...+.+|+
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~  239 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD  239 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence                                   1245566677777788999999999999999998 88888887 4556677889999


Q ss_pred             CceEEEeCCcceeeeeeEEEEEeeccc--CCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC----C
Q 021925          105 DKLAVITTDPFMELNSAIHVKRIARDP--ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET----G  178 (305)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~  178 (305)
                      |+++++++     +...+.+|.+....  .-++...+..+++|+..|..++|+|+.+.+++.+.||++++||..-    +
T Consensus       240 GRFia~~g-----FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~  314 (420)
T KOG2096|consen  240 GRFIAVSG-----FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG  314 (420)
T ss_pred             CcEEEEec-----CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence            99999875     35567777765432  2234456778899999999999999999999999999999999863    1


Q ss_pred             c---Eeeeec-cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeC
Q 021925          179 K---LLKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       179 ~---~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                      +   .++... ......+....++.+|+|+.||.+. ...++++..++++....++  |+..|.+++|+++|++++++++
T Consensus       315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD  393 (420)
T ss_pred             CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence            1   122221 1112223344899999999887665 5579999999998888777  8999999999999999999998


Q ss_pred             CcEEEEEEeehhhhhhhhh
Q 021925          253 QTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~  271 (305)
                      .-.+++-+..-|......+
T Consensus       394 r~vrv~~ntpg~~~~V~~~  412 (420)
T KOG2096|consen  394 RYVRVIRNTPGWHSRVVKL  412 (420)
T ss_pred             eeeeeecCCCchhhHHHHh
Confidence            8877666666665544433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.5e-30  Score=231.15  Aligned_cols=236  Identities=15%  Similarity=0.242  Sum_probs=192.2

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----e----eeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcE
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----E----RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTA   76 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~----~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v   76 (305)
                      +.+|.+.|.+++|+|+|+++|+|+.|+.|+||+..+.    .    +...+. +...+.+++|+| ++.+|++++.||+|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            3458999999999999999999999999999997532    1    222333 356799999987 57899999999999


Q ss_pred             EEEecCCCCeeEEEe-eCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925           77 KLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (305)
                      ++||+.+++.+..+. +...|.+++|+| ++.++++++.     ++.+.+|++..      ...+..+..+ ..+.++.|
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-----Dg~v~iWd~~~------~~~~~~~~~~-~~v~~v~~  625 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-----DGSVKLWSINQ------GVSIGTIKTK-ANICCVQF  625 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-----CCEEEEEECCC------CcEEEEEecC-CCeEEEEE
Confidence            999999998888776 788999999997 6778887765     56677887743      2344455543 67899999


Q ss_pred             c-CCCCEEEEeeCCCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc------eEE
Q 021925          155 G-PLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL------ELI  226 (305)
Q Consensus       155 ~-~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~  226 (305)
                      + +++.+|++|+.||.|++||+++.+ .+..+.   +|...|.++.|. ++..|++++.|++|++||++.+      +++
T Consensus       626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~---~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l  701 (793)
T PLN00181        626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL  701 (793)
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCCccceEec---CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence            5 568999999999999999998765 344554   799999999997 6789999999999999999743      566


Q ss_pred             EEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEE
Q 021925          227 KTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFM  258 (305)
Q Consensus       227 ~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~  258 (305)
                      ..+. |...+.+++|+|++++|++|+.++...+
T Consensus       702 ~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~i  734 (793)
T PLN00181        702 HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFV  734 (793)
T ss_pred             EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEE
Confidence            6776 7788999999999999999999987433

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=5.5e-33  Score=198.43  Aligned_cols=251  Identities=26%  Similarity=0.459  Sum_probs=214.1

Q ss_pred             ceEecccccceEEEEEcC---CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEE
Q 021925            3 PILMKGHERPLTYLKYNK---DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vw   79 (305)
                      |++-.||+.+|-.++|||   +|-+|++++.||.-.+-+-++|..+.++.+|++.|++.....+...-++++.|=+-++|
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw   86 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW   86 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence            677889999999999986   88899999999999999999999999999999999999999888888999999999999


Q ss_pred             ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (305)
Q Consensus        80 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (305)
                      |.-+|..+.++.+..-|..++|+.+.+.+++++...+     +++.++.     ....+...+.+|.+.|..+.|....+
T Consensus        87 ~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekl-----lrvfdln-----~p~App~E~~ghtg~Ir~v~wc~eD~  156 (334)
T KOG0278|consen   87 DAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKL-----LRVFDLN-----RPKAPPKEISGHTGGIRTVLWCHEDK  156 (334)
T ss_pred             hhhhhhhhhhhhhhheeeeEEecccchhhhccchHHH-----hhhhhcc-----CCCCCchhhcCCCCcceeEEEeccCc
Confidence            9999999999999999999999999999999876332     2333332     22345566789999999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCcEeeeecccc------------------------------------CCccceEEEEEcCCC
Q 021925          160 TIISAGEDAIVRIWDTETGKLLKESDKET------------------------------------GHKKTITSLAKAADG  203 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------------~~~~~v~~~~~~~~~  203 (305)
                      .|++++.|++||+||.++++.+++++...                                    .-...|.+...+|+.
T Consensus       157 ~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k  236 (334)
T KOG0278|consen  157 CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK  236 (334)
T ss_pred             eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC
Confidence            99999999999999999999888765310                                    112346677777888


Q ss_pred             CEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          204 SHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       204 ~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      ..+++|+.|..++.||..+++.+..+.  |.++|.|+.|+|+|..-++|+.||.     +++|....
T Consensus       237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-----irlWQt~~  298 (334)
T KOG0278|consen  237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-----IRLWQTTP  298 (334)
T ss_pred             ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-----EEEEEecC
Confidence            888889999999999999999888863  8899999999999999999999998     56665443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=7.9e-32  Score=198.31  Aligned_cols=218  Identities=20%  Similarity=0.335  Sum_probs=178.8

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC------------C------eeeEEecCCCcceEEEEEcCCCc
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------------G------ERLGTYRGHNGAVWCCDVSRDSM   65 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~------------~------~~~~~~~~~~~~v~~i~~~~~~~   65 (305)
                      ..+..|++++++-+|+|||.++|+|+.|.+|+|.|++.            +      -.++++-.|.++|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            46889999999999999999999999999999999871            1      24567778999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCe---eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925           66 TLITGSADQTAKLWNVETGAQ---LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (305)
Q Consensus        66 ~l~s~~~dg~v~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (305)
                      .|++++.|++|+++|+.....   .+.+....+++++.|+|.|.+++++++-     ...+++++....--   -....-
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH-----p~~rlYdv~T~Qcf---vsanPd  257 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH-----PTLRLYDVNTYQCF---VSANPD  257 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCC-----CceeEEeccceeEe---eecCcc
Confidence            999999999999999875533   3344577889999999999999999873     33344443321100   011123


Q ss_pred             eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      ..|.+.|+++.+++.+++.++++.||.|++||--+++++.++.... ....|.+..|..+|+++++.+.|..+++|.+.+
T Consensus       258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST  336 (430)
T ss_pred             cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence            5789999999999999999999999999999999999999887432 245799999999999999999999999999998


Q ss_pred             ceEEEEEe
Q 021925          223 LELIKTYV  230 (305)
Q Consensus       223 ~~~~~~~~  230 (305)
                      ++++..+.
T Consensus       337 ~R~l~~Yt  344 (430)
T KOG0640|consen  337 GRMLKEYT  344 (430)
T ss_pred             CceEEEEe
Confidence            87766654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.3e-31  Score=213.01  Aligned_cols=263  Identities=18%  Similarity=0.238  Sum_probs=217.2

Q ss_pred             ecccccceEEEEE-cCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            6 MKGHERPLTYLKY-NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         6 l~~h~~~v~~~~~-~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      +-|-.+.|.+|+| .|+.++||.++..+.+|+++..+..+. .+.+|++.|.+++...+|-+|+||+.|+++++|.++++
T Consensus       319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~  397 (775)
T KOG0319|consen  319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN  397 (775)
T ss_pred             hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence            4467788999988 567789999999999999998876664 88999999999996667789999999999999988544


Q ss_pred             Cee----EEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEE----EEeccCCCeeEEEE
Q 021925           85 AQL----FTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVL----ILKGPQGRINRAVW  154 (305)
Q Consensus        85 ~~~----~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~  154 (305)
                      ...    .... |...+.+++++..+. +++.++.     +..+++|.+........ ....    ....|...|++++.
T Consensus       398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~-----D~tlK~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vai  471 (775)
T KOG0319|consen  398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ-----DCTLKLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAI  471 (775)
T ss_pred             cchhhhhhhhcccccccceeeecccCccEEEEecC-----CceEEEecCCCcccccc-cceehhhHHHHhhcccccceEe
Confidence            322    2222 788999999977654 4455444     67888888877322221 2222    44679999999999


Q ss_pred             cCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCC
Q 021925          155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TER  233 (305)
Q Consensus       155 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~  233 (305)
                      +|+.+.++||++|.+.+||++........+.   +|...|.++.|+|..+.++|+|.|++|+||.+.++.+++++. |..
T Consensus       472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLs---GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~  548 (775)
T KOG0319|consen  472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLS---GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS  548 (775)
T ss_pred             cCCCceEEecccccceeeecccCceEEEEee---CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc
Confidence            9999999999999999999999888888888   999999999999999999999999999999999999999999 999


Q ss_pred             CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhccccccccc
Q 021925          234 PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASRKY  283 (305)
Q Consensus       234 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (305)
                      .|..+.|-.+|+.|++|+.+|.     +++|+.....-...+..+.++-.
T Consensus       549 aVlra~F~~~~~qliS~~adGl-----iKlWnikt~eC~~tlD~H~DrvW  593 (775)
T KOG0319|consen  549 AVLRASFIRNGKQLISAGADGL-----IKLWNIKTNECEMTLDAHNDRVW  593 (775)
T ss_pred             eeEeeeeeeCCcEEEeccCCCc-----EEEEeccchhhhhhhhhccceeE
Confidence            9999999999999999999998     77887766665555555544433

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=6e-30  Score=212.95  Aligned_cols=229  Identities=17%  Similarity=0.273  Sum_probs=179.7

Q ss_pred             EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCe--------eeEEecCCCcceEEEEEcCCCcE-EEEEeCCC
Q 021925            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE--------RLGTYRGHNGAVWCCDVSRDSMT-LITGSADQ   74 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~--------~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~dg   74 (305)
                      .+.+|.++|.+++|+|+ +++||+|+.||+|+|||+.++.        ++..+.+|...|.+++|+|++.. |++++.|+
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg  148 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS  148 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence            47899999999999996 7899999999999999997642        34567889999999999998865 57899999


Q ss_pred             cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE--
Q 021925           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA--  152 (305)
Q Consensus        75 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--  152 (305)
                      +|++||+++++.+..+.+...+.+++|+|++.++++++.     +..+.+|++..      ++.+..+.+|.+.+...  
T Consensus       149 tIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~-----D~~IrIwD~Rs------g~~i~tl~gH~g~~~s~~v  217 (568)
T PTZ00420        149 FVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCV-----GKHMHIIDPRK------QEIASSFHIHDGGKNTKNI  217 (568)
T ss_pred             eEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEec-----CCEEEEEECCC------CcEEEEEecccCCceeEEE
Confidence            999999999998888877888999999999999987764     45677777643      45667788898765433  


Q ss_pred             ---EEcCCCCEEEEeeCCC----cEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925          153 ---VWGPLNRTIISAGEDA----IVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       153 ---~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  224 (305)
                         .|++++++|++++.|+    .|+|||+++ ++++.... ...+.+.+......+++.++++|+.|+.|++|++..+.
T Consensus       218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence               3458889999988764    799999995 55555543 11233444444445568899999999999999998764


Q ss_pred             E--EEEEeeCCCeeEEEecCCCC
Q 021925          225 L--IKTYVTERPVNAVTMSPLLD  245 (305)
Q Consensus       225 ~--~~~~~~~~~v~~~~~~~~~~  245 (305)
                      .  +..+.+..+..+++|.|...
T Consensus       297 ~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        297 IRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEeecccccCCCccceEEccccc
Confidence            2  33344677889999999753

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.7e-30  Score=201.03  Aligned_cols=244  Identities=20%  Similarity=0.270  Sum_probs=194.2

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeC--CCcEEEEe
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSA--DQTAKLWN   80 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~--dg~v~vwd   80 (305)
                      .+.+|..+++-..|+|.|.++|+|...|.|||||....+  ...+++...++|.+|+|++|+++|+..++  ++..+++-
T Consensus        54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~  133 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL  133 (603)
T ss_pred             eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence            467899999999999999999999999999999976533  33466778899999999999999988765  33333444


Q ss_pred             cCCCCeeEEEe-eCCCceEEEEecCCceEE-EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           81 VETGAQLFTFN-FDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        81 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      .++|..+-.+. +...+.++.|-|...+-+ +++++     +.+..++-      .+.+....+..|..-|.++.|+|||
T Consensus       134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdD-----n~v~ffeG------PPFKFk~s~r~HskFV~~VRysPDG  202 (603)
T KOG0318|consen  134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDD-----NTVAFFEG------PPFKFKSSFREHSKFVNCVRYSPDG  202 (603)
T ss_pred             ecCCCccceeeccceeEeeeeccCCCceEEEeccCC-----CeEEEeeC------CCeeeeecccccccceeeEEECCCC
Confidence            44676666666 777888999988665443 33332     22222111      2334556677899999999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE---------
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY---------  229 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------  229 (305)
                      .++++++.||++.+||-.+++.+..+....+|.+.|.+++|+||+..+++++.|.+++|||+.+.++++++         
T Consensus       203 ~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dq  282 (603)
T KOG0318|consen  203 SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQ  282 (603)
T ss_pred             CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhce
Confidence            99999999999999999999999999877799999999999999999999999999999998875443332         


Q ss_pred             ----------------------------------e-eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925          230 ----------------------------------V-TERPVNAVTMSPLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       230 ----------------------------------~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~  259 (305)
                                                        . |...|++++.+|++++|++|+.||.+..|
T Consensus       283 qvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W  347 (603)
T KOG0318|consen  283 QVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW  347 (603)
T ss_pred             EEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence                                              2 44568999999999999999999984433

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=8.3e-33  Score=206.44  Aligned_cols=232  Identities=23%  Similarity=0.416  Sum_probs=196.7

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      ..+.|.|+.+.  ...+++|..|.+|+|||..+.+++..+.+|++.|.|+.|.  .+.|++|+.|.+|++||+++++++.
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence            45678999885  4579999999999999999999999999999999999995  5599999999999999999999988


Q ss_pred             EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925           89 TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (305)
Q Consensus        89 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  167 (305)
                      ++- +-..|..+.|+.  .++++++.     +..+.+|++....   .....+.+.+|...|+.+.|+  .+++++++.|
T Consensus       272 tlihHceaVLhlrf~n--g~mvtcSk-----DrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd--~kyIVsASgD  339 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFSN--GYMVTCSK-----DRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFD--DKYIVSASGD  339 (499)
T ss_pred             HHhhhcceeEEEEEeC--CEEEEecC-----CceeEEEeccCch---HHHHHHHHhhhhhheeeeccc--cceEEEecCC
Confidence            776 667788887764  35555544     5667778776433   234456778999999999997  5699999999


Q ss_pred             CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCc
Q 021925          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDH  246 (305)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  246 (305)
                      .+|++|++.+++.++.+.   +|...|.|+.+  .++++++|++|.+|++||+..|.+++.++ |+.-|.++.|..  +.
T Consensus       340 RTikvW~~st~efvRtl~---gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--kr  412 (499)
T KOG0281|consen  340 RTIKVWSTSTCEFVRTLN---GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KR  412 (499)
T ss_pred             ceEEEEeccceeeehhhh---cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ce
Confidence            999999999999999998   89999988877  58899999999999999999999999998 888899999965  56


Q ss_pred             EEEeeCCcEEEEEEeehhhhhh
Q 021925          247 VCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       247 l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      +++|+.||.     +++|++..
T Consensus       413 IVSGaYDGk-----ikvWdl~a  429 (499)
T KOG0281|consen  413 IVSGAYDGK-----IKVWDLQA  429 (499)
T ss_pred             eeeccccce-----EEEEeccc
Confidence            999999998     66666543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=5e-31  Score=218.21  Aligned_cols=251  Identities=18%  Similarity=0.281  Sum_probs=217.0

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      ++.-+..|..++|+|...+++++--.|.|++||.+-+..+..+..|.++|..++|+|++.+++||+.|-.|+||+.++.+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      ++.++. |-..|+.+.|++.-.+++.+++     +..+.+|++.      ..+++..+.+|...|.|..|+|....++++
T Consensus        85 clftL~GHlDYVRt~~FHheyPWIlSASD-----DQTIrIWNwq------sr~~iavltGHnHYVMcAqFhptEDlIVSa  153 (1202)
T KOG0292|consen   85 CLFTLLGHLDYVRTVFFHHEYPWILSASD-----DQTIRIWNWQ------SRKCIAVLTGHNHYVMCAQFHPTEDLIVSA  153 (1202)
T ss_pred             ehhhhccccceeEEeeccCCCceEEEccC-----CCeEEEEecc------CCceEEEEecCceEEEeeccCCccceEEEe
Confidence            988877 8899999999999999999998     7788888884      458899999999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCcEeee-----------------e---------ccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925          165 GEDAIVRIWDTETGKLLKE-----------------S---------DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW  218 (305)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~-----------------~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  218 (305)
                      |-|-+|++||+..-+....                 +         ....+|...|+-++|+|.-..+++|+.|..|++|
T Consensus       154 SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlW  233 (1202)
T KOG0292|consen  154 SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW  233 (1202)
T ss_pred             cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEE
Confidence            9999999999863110000                 0         0134899999999999999999999999999999


Q ss_pred             EcCCceE--EEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          219 DARTLEL--IKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       219 d~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      .+...+.  +.+.+ |...|.++-|+|..+++++.+.|+.     +.+|+..-....
T Consensus       234 rmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks-----irVwDm~kRt~v  285 (1202)
T KOG0292|consen  234 RMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS-----IRVWDMTKRTSV  285 (1202)
T ss_pred             EeccccceeehhhhcccCCcceEEecCccceeEecCCCcc-----EEEEecccccce
Confidence            9875432  22333 8889999999999999999999987     666766544443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=4.5e-32  Score=202.54  Aligned_cols=232  Identities=22%  Similarity=0.369  Sum_probs=191.2

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .|.||++.|.|+.|.  .+.+++|+.|.+|++||.++++++.++-.|.+.|..+.|+.  .++++++.|.++.+||+.+.
T Consensus       232 ~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sp  307 (499)
T KOG0281|consen  232 ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASP  307 (499)
T ss_pred             hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCc
Confidence            578999999999986  55999999999999999999999999999999999999984  38999999999999999876


Q ss_pred             CeeEEE----eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           85 AQLFTF----NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        85 ~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      ..+...    .+...|..+.|+..  +++.+++     +..+++|++.      ..+.++.+.+|+..|.|+.+.  +++
T Consensus       308 s~it~rrVLvGHrAaVNvVdfd~k--yIVsASg-----DRTikvW~~s------t~efvRtl~gHkRGIAClQYr--~rl  372 (499)
T KOG0281|consen  308 TDITLRRVLVGHRAAVNVVDFDDK--YIVSASG-----DRTIKVWSTS------TCEFVRTLNGHKRGIACLQYR--DRL  372 (499)
T ss_pred             hHHHHHHHHhhhhhheeeeccccc--eEEEecC-----CceEEEEecc------ceeeehhhhcccccceehhcc--CeE
Confidence            533221    16677777777654  7777765     6677778774      457889999999999998875  889


Q ss_pred             EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE---------EEE-e
Q 021925          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI---------KTY-V  230 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~-~  230 (305)
                      +++|+.|.+|++||+..|.+++.++   +|+.-|.++.|.  .+.+++|+.||+|++||+..+...         .+. +
T Consensus       373 vVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~  447 (499)
T KOG0281|consen  373 VVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE  447 (499)
T ss_pred             EEecCCCceEEEEeccccHHHHHHh---chHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhh
Confidence            9999999999999999999999998   999999999995  568999999999999999876432         222 2


Q ss_pred             eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          231 TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       231 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      |.+.|..+.|..  ..+++++.++.     +.+|+..
T Consensus       448 hsgRVFrLQFD~--fqIvsssHddt-----ILiWdFl  477 (499)
T KOG0281|consen  448 HSGRVFRLQFDE--FQIISSSHDDT-----ILIWDFL  477 (499)
T ss_pred             ccceeEEEeecc--eEEEeccCCCe-----EEEEEcC
Confidence            677888888864  45777777766     5555543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=1.9e-31  Score=199.88  Aligned_cols=244  Identities=19%  Similarity=0.277  Sum_probs=200.2

Q ss_pred             CceE--ecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925            2 RPIL--MKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (305)
Q Consensus         2 ~~~~--l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v   78 (305)
                      +|.+  |.||.+.|.|++=+|.. ..+|+|+.||.|+|||+.+.++..++.+|.+.|.+|++..  ..+++++.|.+|+.
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence            3543  78999999999999977 7899999999999999999999999999999999999986  57899999999999


Q ss_pred             EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      |.++. ....++.....+..+.-+..+..+++++.       .+.+|+..+      ..++..+.-....|.++.|+|..
T Consensus       134 wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe-------~i~IWD~~R------~~Pv~smswG~Dti~svkfNpvE  199 (433)
T KOG0268|consen  134 WKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGE-------QIDIWDEQR------DNPVSSMSWGADSISSVKFNPVE  199 (433)
T ss_pred             eeccC-CcceeeeccccccccccccccccccccCc-------eeeeccccc------CCccceeecCCCceeEEecCCCc
Confidence            99875 57778888888888887777777777654       455566543      35666677777888899999876


Q ss_pred             C-EEEEeeCCCcEEEEeCCCCcEeeeecc---------------------------------------ccCCccceEEEE
Q 021925          159 R-TIISAGEDAIVRIWDTETGKLLKESDK---------------------------------------ETGHKKTITSLA  198 (305)
Q Consensus       159 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------------------------~~~~~~~v~~~~  198 (305)
                      . .|+++..|+.|.+||++++++++.+..                                       ..+|.+.|.++.
T Consensus       200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd  279 (433)
T KOG0268|consen  200 TSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD  279 (433)
T ss_pred             chheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec
Confidence            4 566667899999999988777654321                                       236788999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       199 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                      |+|.|+-+++||.|.+|+||..+.+.....+.  --..|.|+.||.|.+++++|++++.     +.+|..
T Consensus       280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n-----vRlWka  344 (433)
T KOG0268|consen  280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN-----VRLWKA  344 (433)
T ss_pred             cCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc-----eeeeec
Confidence            99999999999999999999999887655544  3346899999999999999999998     555543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.98  E-value=3.1e-30  Score=201.72  Aligned_cols=247  Identities=18%  Similarity=0.207  Sum_probs=195.0

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC---------------------------eeeE---------
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---------------------------ERLG---------   46 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~---------------------------~~~~---------   46 (305)
                      .+.|++|+..|.++++.|.|..+++|+.|..|++||+...                           ..+.         
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            3578999999999999999999999999999999997621                           1000         


Q ss_pred             -----------------------EecCCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCCCe-eEEEe------eCCC
Q 021925           47 -----------------------TYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQ-LFTFN------FDSP   95 (305)
Q Consensus        47 -----------------------~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~~~-~~~~~------~~~~   95 (305)
                                             ..++|...++|.+|+|+ ...+++++.||++++||+...+. ...+.      ..-+
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP  319 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence                                   01478899999999995 46889999999999999876542 33333      2346


Q ss_pred             ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC--CeeEEEEcCCCCEEEEeeCCCcEEEE
Q 021925           96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDAIVRIW  173 (305)
Q Consensus        96 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iw  173 (305)
                      +..++|++++..++++..     ++.+.+|+.....   .......-+.|..  .|+++.||++|++|++-+.|+++++|
T Consensus       320 ~tsC~~nrdg~~iAagc~-----DGSIQ~W~~~~~~---v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW  391 (641)
T KOG0772|consen  320 VTSCAWNRDGKLIAAGCL-----DGSIQIWDKGSRT---VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW  391 (641)
T ss_pred             ceeeecCCCcchhhhccc-----CCceeeeecCCcc---cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence            889999999999888764     7788888863321   1223444567776  89999999999999999999999999


Q ss_pred             eCCCCc-EeeeeccccCCccceEEEEEcCCCCEEEEEeC------CCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCC
Q 021925          174 DTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLD  245 (305)
Q Consensus       174 d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~  245 (305)
                      |++..+ ++...... ....+-+.++|||+.++|++|+.      .|.+.+||..+.+.+..+. ....|..+.|+|.-+
T Consensus       392 DLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN  470 (641)
T KOG0772|consen  392 DLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN  470 (641)
T ss_pred             eccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence            999754 44333321 23456678999999999999875      5789999999999999887 667799999999999


Q ss_pred             cEEEeeCCcEEEE
Q 021925          246 HVCIGEPQTIKFM  258 (305)
Q Consensus       246 ~l~~~~~~~~~~~  258 (305)
                      .|.+|+++|...+
T Consensus       471 Qi~~gsgdG~~~v  483 (641)
T KOG0772|consen  471 QIFAGSGDGTAHV  483 (641)
T ss_pred             heeeecCCCceEE
Confidence            9999999987543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=5.4e-30  Score=205.44  Aligned_cols=238  Identities=18%  Similarity=0.313  Sum_probs=207.9

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~   87 (305)
                      +++.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|.+++|.  +..+.+|+.|+.|..+|++..+..
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~  293 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV  293 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence            378999999999999999999999999999999999999998 99999999998  568999999999999999988765


Q ss_pred             EE-Ee-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEe
Q 021925           88 FT-FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISA  164 (305)
Q Consensus        88 ~~-~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~  164 (305)
                      .. +. |...|..++|++++..++.++.     ++.+.+|+.      ...++...+..|...|..++|+|-. ..||+|
T Consensus       294 ~~~~~~H~qeVCgLkws~d~~~lASGgn-----DN~~~Iwd~------~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG  362 (484)
T KOG0305|consen  294 VSTLQGHRQEVCGLKWSPDGNQLASGGN-----DNVVFIWDG------LSPEPKFTFTEHTAAVKALAWCPWQSGLLATG  362 (484)
T ss_pred             hhhhhcccceeeeeEECCCCCeeccCCC-----ccceEeccC------CCccccEEEeccceeeeEeeeCCCccCceEEc
Confidence            55 44 8899999999999999999987     556666666      3446788899999999999999965 677876


Q ss_pred             e--CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEE--EeCCCeEEEEEcCCceEEEEEe-eCCCeeEEE
Q 021925          165 G--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT--GSLDKSAKLWDARTLELIKTYV-TERPVNAVT  239 (305)
Q Consensus       165 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~  239 (305)
                      +  .|+.|++||..+++.+..+.    ....|.++.|++..+.|++  |..++.|.||+..+.+.+..+. |..+|..++
T Consensus       363 GGs~D~~i~fwn~~~g~~i~~vd----tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la  438 (484)
T KOG0305|consen  363 GGSADRCIKFWNTNTGARIDSVD----TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA  438 (484)
T ss_pred             CCCcccEEEEEEcCCCcEecccc----cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE
Confidence            5  59999999999999998885    6789999999998877665  3457889999999999988887 999999999


Q ss_pred             ecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          240 MSPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      ++|||..+++|+.|..     ++.|.+..
T Consensus       439 ~SPdg~~i~t~a~DET-----lrfw~~f~  462 (484)
T KOG0305|consen  439 LSPDGETIVTGAADET-----LRFWNLFD  462 (484)
T ss_pred             ECCCCCEEEEecccCc-----EEeccccC
Confidence            9999999999999998     66665543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=5.8e-30  Score=198.67  Aligned_cols=239  Identities=23%  Similarity=0.332  Sum_probs=202.9

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      +...++.|.++.|..||+++|+|...|.|+|+|..+...+..+.+|+.+|..+.|+| ++..+++|+.|+.+++||+.+.
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a  143 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA  143 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence            344567899999999999999999999999999777668889999999999999999 5567888999999999999988


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      .....+. +...|++.+++|....++..+    .+++.++.|++....      ....--.|..+|..+.+-|.|..+++
T Consensus       144 ~v~~~l~~htDYVR~g~~~~~~~hivvtG----sYDg~vrl~DtR~~~------~~v~elnhg~pVe~vl~lpsgs~ias  213 (487)
T KOG0310|consen  144 YVQAELSGHTDYVRCGDISPANDHIVVTG----SYDGKVRLWDTRSLT------SRVVELNHGCPVESVLALPSGSLIAS  213 (487)
T ss_pred             EEEEEecCCcceeEeeccccCCCeEEEec----CCCceEEEEEeccCC------ceeEEecCCCceeeEEEcCCCCEEEE
Confidence            8644554 889999999999877555443    357888899886431      23334468889999999999999998


Q ss_pred             eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCC
Q 021925          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPL  243 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  243 (305)
                      ++. ..|++||+.+|...-...  ..|...|+|+.+..++..|++|+.|+.|++||+.+.+.+..+...++|.+++.+|+
T Consensus       214 AgG-n~vkVWDl~~G~qll~~~--~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~d  290 (487)
T KOG0310|consen  214 AGG-NSVKVWDLTTGGQLLTSM--FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPD  290 (487)
T ss_pred             cCC-CeEEEEEecCCceehhhh--hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCC
Confidence            874 679999999665443333  15999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEeeCCcEEE
Q 021925          244 LDHVCIGEPQTIKF  257 (305)
Q Consensus       244 ~~~l~~~~~~~~~~  257 (305)
                      ++.+++|.++|...
T Consensus       291 d~t~viGmsnGlv~  304 (487)
T KOG0310|consen  291 DQTVVIGMSNGLVS  304 (487)
T ss_pred             CceEEEecccceee
Confidence            99999999998753

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=5.5e-30  Score=216.27  Aligned_cols=243  Identities=19%  Similarity=0.245  Sum_probs=202.9

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC------------------CeeeEEecCCCcceEEEEEcCCCcEE
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------------------GERLGTYRGHNGAVWCCDVSRDSMTL   67 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~------------------~~~~~~~~~~~~~v~~i~~~~~~~~l   67 (305)
                      +..|.+.|+|+.|+|||++||+|+.|+.|.||+...                  -+.+..+.+|...|..++|+|++.+|
T Consensus        65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l  144 (942)
T KOG0973|consen   65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL  144 (942)
T ss_pred             eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence            568999999999999999999999999999998762                  13567788999999999999999999


Q ss_pred             EEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-
Q 021925           68 ITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-  145 (305)
Q Consensus        68 ~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  145 (305)
                      ++++.|++|.+||.++.+.+..+. |.+.|..+.|.|-|+++++-++     +..+.+|++...      ...+.+.++ 
T Consensus       145 vS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd-----Drtikvwrt~dw------~i~k~It~pf  213 (942)
T KOG0973|consen  145 VSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSD-----DRTLKVWRTSDW------GIEKSITKPF  213 (942)
T ss_pred             EEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecC-----CceEEEEEcccc------eeeEeeccch
Confidence            999999999999999998888888 8999999999999999999887     556666664321      122222222 


Q ss_pred             -----CCCeeEEEEcCCCCEEEEeeC----CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC-----CC-------
Q 021925          146 -----QGRINRAVWGPLNRTIISAGE----DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-----GS-------  204 (305)
Q Consensus       146 -----~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~-------  204 (305)
                           ...+..+.|||||.+|++...    -..+.|.+..+.+.-..+-   +|.+++.++.|+|.     .+       
T Consensus       214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv---GH~~p~evvrFnP~lfe~~~~ng~~~~~  290 (942)
T KOG0973|consen  214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV---GHSAPVEVVRFNPKLFERNNKNGTSTQP  290 (942)
T ss_pred             hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee---cCCCceEEEEeChHHhccccccCCccCC
Confidence                 335678999999999998753    3478899988887777776   89999999999981     11       


Q ss_pred             -----EEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925          205 -----HFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       205 -----~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                           .+|+|+.|++|.||.....+++....  ....|.+++|+|||..|++++-||........
T Consensus       291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence                 57899999999999998888887776  67889999999999999999999986655444

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=6.3e-30  Score=191.60  Aligned_cols=242  Identities=21%  Similarity=0.393  Sum_probs=215.1

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      .++.||...|..+++|+--.|+++++.|+.|+.||++.++.++.+.+|-+.|.|++.+|.-..|++|+.|.+++|||+++
T Consensus       187 ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt  266 (460)
T KOG0285|consen  187 LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT  266 (460)
T ss_pred             EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence            35789999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      ...+..+. +..+|.++.+.|-+..+++++.     +..+++|++..      ++....+..|+..+.+++.+|....+|
T Consensus       267 r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~-----D~tvrlWDl~a------gkt~~tlt~hkksvral~lhP~e~~fA  335 (460)
T KOG0285|consen  267 RASVHVLSGHTNPVASVMCQPTDPQVITGSH-----DSTVRLWDLRA------GKTMITLTHHKKSVRALCLHPKENLFA  335 (460)
T ss_pred             cceEEEecCCCCcceeEEeecCCCceEEecC-----CceEEEeeecc------CceeEeeecccceeeEEecCCchhhhh
Confidence            99999998 9999999999997777777764     67888888853      577788899999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE---------eeCC
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY---------VTER  233 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~  233 (305)
                      +++.|. |+-|++..+..+..+.   +|...+++++...|+ ++++|+.+|.+.+||.+++...+..         ..+.
T Consensus       336 Sas~dn-ik~w~~p~g~f~~nls---gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEa  410 (460)
T KOG0285|consen  336 SASPDN-IKQWKLPEGEFLQNLS---GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEA  410 (460)
T ss_pred             ccCCcc-ceeccCCccchhhccc---cccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcccccc
Confidence            998864 8999999999888876   899999999998876 7899999999999999988655443         2456


Q ss_pred             CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          234 PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       234 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                      .|.+.+|...|..|++|..|..     ++.|..
T Consensus       411 gI~as~fDktg~rlit~eadKt-----Ik~~ke  438 (460)
T KOG0285|consen  411 GIFASCFDKTGSRLITGEADKT-----IKMYKE  438 (460)
T ss_pred             ceeEEeecccCceEEeccCCcc-----eEEEec
Confidence            7899999999999999988887     555543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1e-30  Score=186.89  Aligned_cols=204  Identities=18%  Similarity=0.346  Sum_probs=176.9

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      .|+.-|.+++|+.|.++|++|+.++.++|+|++..+ +...+.+|.+.|..+.|....+.+++++.|++|++||.+++..
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~  177 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE  177 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence            588899999999999999999999999999998754 5678899999999999999888999999999999999999999


Q ss_pred             eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (305)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  166 (305)
                      ++++..+.+|.++.++++|.++.++....+.++.....            ..+..+ .-...|.+...+|+...+++|++
T Consensus       178 v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf------------~~lKs~-k~P~nV~SASL~P~k~~fVaGge  244 (334)
T KOG0278|consen  178 VQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF------------GLLKSY-KMPCNVESASLHPKKEFFVAGGE  244 (334)
T ss_pred             EEEEecCCCCcceeeccCCCEEEEecCceeEEeccccc------------cceeec-cCccccccccccCCCceEEecCc
Confidence            99999999999999999999999988655544443222            112111 22346888899999999999999


Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  226 (305)
                      |..++.||..++..+..+.  .+|.++|.|+.|+|+|...++||+||+|++|....++..
T Consensus       245 d~~~~kfDy~TgeEi~~~n--kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  245 DFKVYKFDYNTGEEIGSYN--KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ceEEEEEeccCCceeeecc--cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            9999999999999988862  389999999999999999999999999999998766554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=2.8e-30  Score=196.59  Aligned_cols=237  Identities=18%  Similarity=0.240  Sum_probs=196.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      +|.|-.++|+++.|.++++++++++.|+.+++|++.+.+...++.+|++.|+++.|......+++|+.|.++++||+.+.
T Consensus       214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~  293 (459)
T KOG0288|consen  214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA  293 (459)
T ss_pred             hhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh
Confidence            46677788999999999999999999999999999999999999999999999999887666999999999999999998


Q ss_pred             CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      .+..++-..+.+..+...  ...++.+     .++..+..|+...      ..+......+ +.|+++..++++..+.++
T Consensus       294 ~C~kt~l~~S~cnDI~~~--~~~~~Sg-----H~DkkvRfwD~Rs------~~~~~sv~~g-g~vtSl~ls~~g~~lLss  359 (459)
T KOG0288|consen  294 YCSKTVLPGSQCNDIVCS--ISDVISG-----HFDKKVRFWDIRS------ADKTRSVPLG-GRVTSLDLSMDGLELLSS  359 (459)
T ss_pred             heeccccccccccceEec--ceeeeec-----ccccceEEEeccC------CceeeEeecC-cceeeEeeccCCeEEeee
Confidence            888888777777777665  2222222     2355577777643      3444444444 499999999999999999


Q ss_pred             eCCCcEEEEeCCCCcEeeeecccc-CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-e--CCCeeEEEe
Q 021925          165 GEDAIVRIWDTETGKLLKESDKET-GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T--ERPVNAVTM  240 (305)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~--~~~v~~~~~  240 (305)
                      +.|..+.+.|+++.+....+.... ......+.+.|||++.++++||.||.|+||++.++++...+. .  ...|++++|
T Consensus       360 sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W  439 (459)
T KOG0288|consen  360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW  439 (459)
T ss_pred             cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE
Confidence            999999999999988777665221 112348899999999999999999999999999999998887 2  236999999


Q ss_pred             cCCCCcEEEeeCCcE
Q 021925          241 SPLLDHVCIGEPQTI  255 (305)
Q Consensus       241 ~~~~~~l~~~~~~~~  255 (305)
                      +|.|..+++++.+..
T Consensus       440 ~~sG~~Llsadk~~~  454 (459)
T KOG0288|consen  440 NPSGSGLLSADKQKA  454 (459)
T ss_pred             cCCCchhhcccCCcc
Confidence            999999999988776

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=9.9e-29  Score=204.67  Aligned_cols=244  Identities=16%  Similarity=0.220  Sum_probs=185.4

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee-------------EEecCCCcceEEEEEcC-CCcEEEEEeCC
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-------------GTYRGHNGAVWCCDVSR-DSMTLITGSAD   73 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~-------------~~~~~~~~~v~~i~~~~-~~~~l~s~~~d   73 (305)
                      .|-..|+....++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++++|++|+.|
T Consensus        18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D   97 (493)
T PTZ00421         18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED   97 (493)
T ss_pred             cceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence            34456666777778777787777777777875443222             24678999999999999 88899999999


Q ss_pred             CcEEEEecCCCC-------eeEEEe-eCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec
Q 021925           74 QTAKLWNVETGA-------QLFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (305)
Q Consensus        74 g~v~vwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (305)
                      ++|++||+.++.       .+..+. +...|.+++|+|.+ .++++++.     ++.+.+|++..      ++....+.+
T Consensus        98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~-----DgtVrIWDl~t------g~~~~~l~~  166 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA-----DMVVNVWDVER------GKAVEVIKC  166 (493)
T ss_pred             CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC-----CCEEEEEECCC------CeEEEEEcC
Confidence            999999997653       334444 77889999999975 56666553     56778888753      356677889


Q ss_pred             cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccc-eEEEEEcCCCCEEEEEe----CCCeEEEEE
Q 021925          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLAKAADGSHFLTGS----LDKSAKLWD  219 (305)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~i~iwd  219 (305)
                      |...|.+++|+|++++|++++.|+.|++||+++++.+..+.   +|... +..+.|.+++..+++++    .|+.|++||
T Consensus       167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD  243 (493)
T PTZ00421        167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD  243 (493)
T ss_pred             CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence            99999999999999999999999999999999999888776   56543 45678898887777654    479999999


Q ss_pred             cCCce-EEEEEe--eCCCeeEEEecCCCCcEEEee-CCcEEEEEEeehhhhhhhh
Q 021925          220 ARTLE-LIKTYV--TERPVNAVTMSPLLDHVCIGE-PQTIKFMLLVYLFVLFLDI  270 (305)
Q Consensus       220 ~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~  270 (305)
                      +++.. ++....  ....+....|++++++|++|+ +|+.     +++|++..+.
T Consensus       244 lr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-----Iriwdl~~~~  293 (493)
T PTZ00421        244 TRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-----IRCFELMNER  293 (493)
T ss_pred             CCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-----EEEEEeeCCc
Confidence            98764 444333  334566678999999999887 4666     5555554433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=8.4e-30  Score=195.22  Aligned_cols=229  Identities=20%  Similarity=0.311  Sum_probs=195.1

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      ..++++...|..+.+++|+.|..+.++|.++++.+..+++|...|+.+.++|+...+++++.|..|+||...........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            45888888888789999999999999999999999999999999999999999999999999999999998766555444


Q ss_pred             e-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe--ccCCCeeEEEEcCCCCEEEEeeCC
Q 021925           91 N-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWGPLNRTIISAGED  167 (305)
Q Consensus        91 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d  167 (305)
                      . +..+|+.+..+|.+.+++.+++...-....     +.      .+..+....  ...-.+++.+|+|||..+.+|..|
T Consensus       300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd-----~~------~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d  368 (506)
T KOG0289|consen  300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD-----IS------SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD  368 (506)
T ss_pred             ccccccceeeeeccCCcEEEEecCCceEEEEE-----cc------CCcEEEEEeeccccceeEEeeEcCCceEEeccCCC
Confidence            4 899999999999999999998744332222     21      122222222  233458999999999999999999


Q ss_pred             CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC--CCeeEEEecCCCC
Q 021925          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--RPVNAVTMSPLLD  245 (305)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~  245 (305)
                      |.|+|||+.++..+..+.   +|.++|..++|+.+|-+|++++.|+.|++||++..+..+++..+  .++.++.|.+.|.
T Consensus       369 ~~vkiwdlks~~~~a~Fp---ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt  445 (506)
T KOG0289|consen  369 GVVKIWDLKSQTNVAKFP---GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT  445 (506)
T ss_pred             ceEEEEEcCCccccccCC---CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence            999999999999888887   89999999999999999999999999999999999988888733  3699999999999


Q ss_pred             cEEEeeCC
Q 021925          246 HVCIGEPQ  253 (305)
Q Consensus       246 ~l~~~~~~  253 (305)
                      +|++++.+
T Consensus       446 ~L~~~g~~  453 (506)
T KOG0289|consen  446 YLGIAGSD  453 (506)
T ss_pred             eEEeecce
Confidence            99999544

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.6e-29  Score=194.91  Aligned_cols=237  Identities=22%  Similarity=0.344  Sum_probs=202.9

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      ++|.+.|.+++.++||++||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....|++++.|+.|++|+++....
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            48999999999999999999999999999999999999999999999999999998888999999999999999987766


Q ss_pred             eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           87 LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        87 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      +.++- |+..|..+....-++.+.++..     +....+|.+.       .+....+.++.+.+.|++|-.+ ..+++|+
T Consensus       279 vetlyGHqd~v~~IdaL~reR~vtVGgr-----DrT~rlwKi~-------eesqlifrg~~~sidcv~~In~-~HfvsGS  345 (479)
T KOG0299|consen  279 VETLYGHQDGVLGIDALSRERCVTVGGR-----DRTVRLWKIP-------EESQLIFRGGEGSIDCVAFIND-EHFVSGS  345 (479)
T ss_pred             HHHHhCCccceeeechhcccceEEeccc-----cceeEEEecc-------ccceeeeeCCCCCeeeEEEecc-cceeecc
Confidence            65554 8888888888888887777743     5667777773       2455677889999999999864 5789999


Q ss_pred             CCCcEEEEeCCCCcEeeeecccc---------CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----eEEEEEeeC
Q 021925          166 EDAIVRIWDTETGKLLKESDKET---------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYVTE  232 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~  232 (305)
                      .+|.|.+|++.+.+++.......         .++..|++++..|...++++|+.+|.|++|-+..+    +++..+...
T Consensus       346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~  425 (479)
T KOG0299|consen  346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV  425 (479)
T ss_pred             CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc
Confidence            99999999999998887665321         12238999999999999999999999999998876    566666778


Q ss_pred             CCeeEEEecCCCCcEEEeeCCcEE
Q 021925          233 RPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       233 ~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      +-|++++|+++|+.+++|.+...+
T Consensus       426 GfVNsl~f~~sgk~ivagiGkEhR  449 (479)
T KOG0299|consen  426 GFVNSLAFSNSGKRIVAGIGKEHR  449 (479)
T ss_pred             cEEEEEEEccCCCEEEEecccccc
Confidence            889999999999999998777665

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.3e-29  Score=177.68  Aligned_cols=233  Identities=21%  Similarity=0.304  Sum_probs=188.7

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      +..||..+|..++.+.|...+++|+.|..|.+||+.+|+..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.++.
T Consensus        54 tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~  133 (307)
T KOG0316|consen   54 TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR  133 (307)
T ss_pred             eecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999998755


Q ss_pred             --CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           85 --AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        85 --~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                        ++++.+. ....|.++.....  .++.++.     ++..+.++++...      .  ....-..+|++++|+++++..
T Consensus       134 s~ePiQildea~D~V~Si~v~~h--eIvaGS~-----DGtvRtydiR~G~------l--~sDy~g~pit~vs~s~d~nc~  198 (307)
T KOG0316|consen  134 SFEPIQILDEAKDGVSSIDVAEH--EIVAGSV-----DGTVRTYDIRKGT------L--SSDYFGHPITSVSFSKDGNCS  198 (307)
T ss_pred             CCCccchhhhhcCceeEEEeccc--EEEeecc-----CCcEEEEEeecce------e--ehhhcCCcceeEEecCCCCEE
Confidence              4566555 4556666665432  3333332     4555555554321      1  112335689999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccc--eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-CC-eeE
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKT--ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RP-VNA  237 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~-v~~  237 (305)
                      +.++.|+++++.|-.+|+.++.+.   +|...  -..+++......+++|++||.|++||+.....+..+.+. .. +.+
T Consensus       199 La~~l~stlrLlDk~tGklL~sYk---Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~d  275 (307)
T KOG0316|consen  199 LASSLDSTLRLLDKETGKLLKSYK---GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTD  275 (307)
T ss_pred             EEeeccceeeecccchhHHHHHhc---ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEe
Confidence            999999999999999999999888   55543  234466777778999999999999999999999988844 44 689


Q ss_pred             EEecCCCCcEEEeeCCcE
Q 021925          238 VTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~  255 (305)
                      ++++|.-.-++++...+.
T Consensus       276 l~~hp~~~~f~~A~~~~~  293 (307)
T KOG0316|consen  276 LSCHPTMDDFITATGHGD  293 (307)
T ss_pred             eecccCccceeEecCCce
Confidence            999999888888877664

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.5e-30  Score=183.06  Aligned_cols=237  Identities=18%  Similarity=0.290  Sum_probs=189.8

Q ss_pred             ccceEEEEEcCC-CCEEEEeeCCCceEEEEcCC-CeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCe
Q 021925           10 ERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus        10 ~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      .+.+..++|+++ .+.+++++.||+++|||... ..++..++.|+.+|.++.|++ ++..++++|.|++|++|+...++.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            466889999994 46788899999999999653 357888999999999999999 566788889999999999999999


Q ss_pred             eEEEe-eCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEE
Q 021925           87 LFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIIS  163 (305)
Q Consensus        87 ~~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~  163 (305)
                      +.++. +...|...+|+|.. ++++.++.     ++..++|++..     .++... +..|...|.++.|+.-. +.++|
T Consensus       140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg-----d~~l~lwdvr~-----~gk~~~-i~ah~~Eil~cdw~ky~~~vl~T  208 (311)
T KOG0277|consen  140 VQTFNGHNSCIYQAAFSPHIPNLFASASG-----DGTLRLWDVRS-----PGKFMS-IEAHNSEILCCDWSKYNHNVLAT  208 (311)
T ss_pred             eEeecCCccEEEEEecCCCCCCeEEEccC-----CceEEEEEecC-----CCceeE-EEeccceeEeecccccCCcEEEe
Confidence            99888 78889999999954 55555554     66777888653     234444 88999999999999754 68889


Q ss_pred             eeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceEE-EEEe-eCCCeeEEE
Q 021925          164 AGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELI-KTYV-TERPVNAVT  239 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~-~~~~-~~~~v~~~~  239 (305)
                      |+.|+.|+.||+++- .++..+.   +|.-.|+.+.|||.. ..|++++.|=+++|||...+... .+.. |.+-+..+.
T Consensus       209 g~vd~~vr~wDir~~r~pl~eL~---gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~D  285 (311)
T KOG0277|consen  209 GGVDNLVRGWDIRNLRTPLFELN---GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLD  285 (311)
T ss_pred             cCCCceEEEEehhhccccceeec---CCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccc
Confidence            999999999999974 3555554   899999999999954 57899999999999999865443 3344 677788999


Q ss_pred             ecCCC-CcEEEeeCCcEEEEEEeehhh
Q 021925          240 MSPLL-DHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       240 ~~~~~-~~l~~~~~~~~~~~~~~~~~~  265 (305)
                      |++.. .++|.++-|+.     +++|+
T Consensus       286 ws~~~~~~vAs~gWDe~-----l~Vw~  307 (311)
T KOG0277|consen  286 WSLFDPGQVASTGWDEL-----LYVWN  307 (311)
T ss_pred             cccccCceeeecccccc-----eeeec
Confidence            99854 46777777776     55554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=6.4e-29  Score=190.42  Aligned_cols=238  Identities=18%  Similarity=0.242  Sum_probs=208.5

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      ++.||...|+.+.++|+...+++++.|..|+||.............|.++|+.+..+|.|.||++++.||+....|++++
T Consensus       256 ~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g  335 (506)
T KOG0289|consen  256 TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG  335 (506)
T ss_pred             hccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCC
Confidence            57899999999999999999999999999999999888888888899999999999999999999999999999999999


Q ss_pred             CeeEEEeeC---CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           85 AQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        85 ~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      ..+......   -.+.+.+|+|||.++..+..     ++.+++|++..      ...+..+.+|.++|..++|+.+|-+|
T Consensus       336 ~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~-----d~~vkiwdlks------~~~~a~Fpght~~vk~i~FsENGY~L  404 (506)
T KOG0289|consen  336 SQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP-----DGVVKIWDLKS------QTNVAKFPGHTGPVKAISFSENGYWL  404 (506)
T ss_pred             cEEEEEeeccccceeEEeeEcCCceEEeccCC-----CceEEEEEcCC------ccccccCCCCCCceeEEEeccCceEE
Confidence            998888764   34889999999999999876     67788888853      34667788999999999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC--CceEEEEEe-eCCCeeEE
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR--TLELIKTYV-TERPVNAV  238 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~-~~~~v~~~  238 (305)
                      +++++|+.|++||+|..+..+++...  ....+.++.|.+.|.+|+.++.|=+|++++-.  +..++..+. +.+..+++
T Consensus       405 at~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v  482 (506)
T KOG0289|consen  405 ATAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGV  482 (506)
T ss_pred             EEEecCCeEEEEEehhhcccceeecc--ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccccee
Confidence            99999999999999998888877642  33479999999999999999888778877744  445666665 66688999


Q ss_pred             EecCCCCcEEEeeCCcE
Q 021925          239 TMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       239 ~~~~~~~~l~~~~~~~~  255 (305)
                      .|....+++++++.+..
T Consensus       483 ~Fg~~aq~l~s~smd~~  499 (506)
T KOG0289|consen  483 RFGEHAQYLASTSMDAI  499 (506)
T ss_pred             eecccceEEeeccchhh
Confidence            99999999999987765

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4.9e-29  Score=203.02  Aligned_cols=293  Identities=21%  Similarity=0.275  Sum_probs=210.5

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      ++.+.||+..|+++.|+..|..|++||.|+.|.+||+-...-+.++++|++.|+..-|..+.+.+++++.|+.|++||++
T Consensus       100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~  179 (888)
T KOG0306|consen  100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE  179 (888)
T ss_pred             eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence            46789999999999999999999999999999999998877788899999999998888877888999999999999987


Q ss_pred             CCCeeEE-------------------------------------------------------------------------
Q 021925           83 TGAQLFT-------------------------------------------------------------------------   89 (305)
Q Consensus        83 ~~~~~~~-------------------------------------------------------------------------   89 (305)
                      +..+..+                                                                         
T Consensus       180 tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~  259 (888)
T KOG0306|consen  180 TQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFL  259 (888)
T ss_pred             cceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEE
Confidence            1111111                                                                         


Q ss_pred             --------------------------------------------------------------------------------
Q 021925           90 --------------------------------------------------------------------------------   89 (305)
Q Consensus        90 --------------------------------------------------------------------------------   89 (305)
                                                                                                      
T Consensus       260 ~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv  339 (888)
T KOG0306|consen  260 VCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLV  339 (888)
T ss_pred             EEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEE
Confidence                                                                                            


Q ss_pred             ---------------------------E---eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC-------
Q 021925           90 ---------------------------F---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA-------  132 (305)
Q Consensus        90 ---------------------------~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  132 (305)
                                                 +   .|...|++++++.+...++.+.++.+.++......-+.....       
T Consensus       340 ~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~  419 (888)
T KOG0306|consen  340 LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASK  419 (888)
T ss_pred             EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEE
Confidence                                       0   133445666666666666666544433332211111110000       


Q ss_pred             -----------C----------CCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC-----CcEee--ee
Q 021925          133 -----------D----------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET-----GKLLK--ES  184 (305)
Q Consensus       133 -----------~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~--~~  184 (305)
                                 .          .....+...+.|.+.|.+++.+||++.+++|+.|.+|++||..-     +...+  .+
T Consensus       420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl  499 (888)
T KOG0306|consen  420 FVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL  499 (888)
T ss_pred             ecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence                       0          11123344568999999999999999999999999999999752     11111  11


Q ss_pred             cc--ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEe
Q 021925          185 DK--ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLV  261 (305)
Q Consensus       185 ~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~  261 (305)
                      ..  .-.....|.++.+||||++|+++=.|.+++||-+.+.+-.-++. |.-||.|+.++||++.+++|+.|..     +
T Consensus       500 ~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-----V  574 (888)
T KOG0306|consen  500 KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-----V  574 (888)
T ss_pred             ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-----e
Confidence            10  00245789999999999999999999999999999998877776 8999999999999999999999998     8


Q ss_pred             ehhhhhhhhhhhhccccccc----ccccccccccCCCCceEEE
Q 021925          262 YLFVLFLDILFYNLYCSASR----KYIYDDLLNFDAGPQHFIF  300 (305)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  300 (305)
                      ++|.+.+.---..+..+.+.    .|++....-|..+...-+-
T Consensus       575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvK  617 (888)
T KOG0306|consen  575 KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVK  617 (888)
T ss_pred             EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEE
Confidence            88888776554444443222    3444333344444444333

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.9e-30  Score=182.28  Aligned_cols=248  Identities=21%  Similarity=0.308  Sum_probs=192.1

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC---eeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEE
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLW   79 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vw   79 (305)
                      +..+|++.|.++...--|+.|||++.|++|+|+..+++   +.+.++.+|.++|..++|..  -|..|++++.||+|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            35689999999999989999999999999999998764   46789999999999999965  78999999999999999


Q ss_pred             ecCCCCeeEEEe---eCCCceEEEEecCC--ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925           80 NVETGAQLFTFN---FDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (305)
Q Consensus        80 d~~~~~~~~~~~---~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (305)
                      .-++++-.+...   +...+++++|.|.+  ..+++++.     ++.+.+......   ...........|.-.+++++|
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS-----DG~vsvl~~~~~---g~w~t~ki~~aH~~GvnsVsw  157 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS-----DGKVSVLTYDSS---GGWTTSKIVFAHEIGVNSVSW  157 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC-----CCcEEEEEEcCC---CCccchhhhhccccccceeee
Confidence            988774333322   88899999999964  45555543     444444444332   122334456789999999999


Q ss_pred             cCC---C-----------CEEEEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCC----CEEEEEeCCCe
Q 021925          155 GPL---N-----------RTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADG----SHFLTGSLDKS  214 (305)
Q Consensus       155 ~~~---~-----------~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~  214 (305)
                      .|.   |           +.|++|+.|..|+||+..+++-  -+.+.   +|...|+.++|.|.-    ..||+++.||+
T Consensus       158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~---~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~  234 (299)
T KOG1332|consen  158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE---GHKDWVRDVAWAPSVGLPKSTIASCSQDGT  234 (299)
T ss_pred             cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh---hcchhhhhhhhccccCCCceeeEEecCCCc
Confidence            986   4           5699999999999999987632  22343   899999999999953    46999999999


Q ss_pred             EEEEEcCCc--eEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          215 AKLWDARTL--ELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       215 i~iwd~~~~--~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      +.||..+..  .-..++.  ....+..++||+.|+.|+++++++.     +.+|.-..
T Consensus       235 viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk-----vtlwke~~  287 (299)
T KOG1332|consen  235 VIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK-----VTLWKENV  287 (299)
T ss_pred             EEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcE-----EEEEEeCC
Confidence            999986622  1111121  5677999999999999999998887     55554433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.2e-30  Score=204.64  Aligned_cols=249  Identities=23%  Similarity=0.354  Sum_probs=205.4

Q ss_pred             ccccceE---EEEEcC-CCCEEEEeeCCCceEEEEcCCCe------eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEE
Q 021925            8 GHERPLT---YLKYNK-DGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (305)
Q Consensus         8 ~h~~~v~---~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~   77 (305)
                      .|...|.   ++..+. ++++|+|||.||.|++|+.....      ...+++.|.+.|.++....+++.|+++|.|-+|+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK   98 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK   98 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence            3444555   444544 67789999999999999876422      3667888999999999999999999999999999


Q ss_pred             EEecCCCC--eeEEEe-eCCCceEEEE-ecCCceEEEeCCcceeeeeeEEEEEeecccC----CCCCceEEEEe-ccCCC
Q 021925           78 LWNVETGA--QLFTFN-FDSPARSVDF-AVGDKLAVITTDPFMELNSAIHVKRIARDPA----DQGGESVLILK-GPQGR  148 (305)
Q Consensus        78 vwd~~~~~--~~~~~~-~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~  148 (305)
                      +|+...+.  +..++. |...|.|+++ .++...++.++     ++..+.+|++.....    .........+. ++..+
T Consensus        99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgG-----LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s  173 (735)
T KOG0308|consen   99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGG-----LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS  173 (735)
T ss_pred             EeecccCcchhHhhhhcccchheeeeecccCceeEEecC-----CCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence            99998773  445554 8999999999 55555665554     577788888874422    11122222333 88999


Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE
Q 021925          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (305)
Q Consensus       149 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  228 (305)
                      |++++.++.|..+++|+..+.+++||.++.+.+..++   +|...|..+..++||..++++|+||+|++||+...+++.+
T Consensus       174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T  250 (735)
T KOG0308|consen  174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT  250 (735)
T ss_pred             eeeeecCCcceEEEecCcccceEEeccccccceeeee---ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee
Confidence            9999999999999999999999999999999998888   8999999999999999999999999999999999999999


Q ss_pred             Ee-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehh
Q 021925          229 YV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLF  264 (305)
Q Consensus       229 ~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  264 (305)
                      +. |...|+++..+|+-.++.+|+.++.+....++-.
T Consensus       251 ~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  251 YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            88 8888999999999999999999999766655543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=5.6e-29  Score=187.64  Aligned_cols=253  Identities=20%  Similarity=0.333  Sum_probs=203.4

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC---CcEEEEEeCCCcEEEEecCCC
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      -|.+.|.++.-.  ++.|++|+.||.+++||. .|+...++.+|.++|.+++|...   ...|++++.|.++++|.++.+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            578888888877  679999999999999995 58899999999999998888542   236999999999999998877


Q ss_pred             CeeEEE-----eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeeccc-------------------CCCCCceEE
Q 021925           85 AQLFTF-----NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP-------------------ADQGGESVL  140 (305)
Q Consensus        85 ~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~  140 (305)
                      +.....     .|...|.++...+++..++.++-     +..+.+|......                   ......++.
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~-----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW-----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecc-----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            543322     38889999999999999888763     5555666521111                   112345778


Q ss_pred             EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      .+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.....+.    ....++++..+|..++|++|+.|..+++||.
T Consensus       255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP  329 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT----TNKSLNCISYSPLSKLLASGSSDRHIRLWDP  329 (423)
T ss_pred             EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee----cCcceeEeecccccceeeecCCCCceeecCC
Confidence            8999999999999998 6679999999999999999999988886    5788999999999999999999999999999


Q ss_pred             CCce---EEEEEe-eCCCeeEEEecCCCCc-EEEeeCCcEEEEEEeehhhhhhhh-hhhhcccc
Q 021925          221 RTLE---LIKTYV-TERPVNAVTMSPLLDH-VCIGEPQTIKFMLLVYLFVLFLDI-LFYNLYCS  278 (305)
Q Consensus       221 ~~~~---~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  278 (305)
                      +++.   ...++. |...|.++.|+|...+ +++|+.|+.     +++|+..... .+|.+...
T Consensus       330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-----~klWDvRS~k~plydI~~h  388 (423)
T KOG0313|consen  330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-----VKLWDVRSTKAPLYDIAGH  388 (423)
T ss_pred             CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-----EEEEEeccCCCcceeeccC
Confidence            8763   223444 8889999999998877 555677776     7777776655 55555555

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1.7e-30  Score=201.46  Aligned_cols=206  Identities=19%  Similarity=0.350  Sum_probs=172.8

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET   83 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~   83 (305)
                      ++.||..+|.+++|+++|..+++++.|+.+++||+++|+++..+. -...+.|+.|+|++ +.+++|+.|+.|+.||+++
T Consensus       253 tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs  331 (503)
T KOG0282|consen  253 TFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS  331 (503)
T ss_pred             hhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc
Confidence            578999999999999999999999999999999999999999987 45678999999988 8899999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC----------------------------
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ----------------------------  134 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  134 (305)
                      ++.++.+. +-+.+..+.|.++++.++.+++.     ..+.+|.........                            
T Consensus       332 ~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd-----ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d  406 (503)
T KOG0282|consen  332 GKVVQEYDRHLGAILDITFVDEGRRFISSSDD-----KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD  406 (503)
T ss_pred             hHHHHHHHhhhhheeeeEEccCCceEeeeccC-----ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC
Confidence            99888887 77899999999999999998873     344455443221100                            


Q ss_pred             ------------CCceEEEEeccC--CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc
Q 021925          135 ------------GGESVLILKGPQ--GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA  200 (305)
Q Consensus       135 ------------~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  200 (305)
                                  .......+++|.  +.-..+.|||||++|++|+.||.+.+||.++-+.+..+.   .|.+++..+.|+
T Consensus       407 N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk---ah~~~ci~v~wH  483 (503)
T KOG0282|consen  407 NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK---AHDQPCIGVDWH  483 (503)
T ss_pred             ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc---cCCcceEEEEec
Confidence                        001112234443  445678999999999999999999999999999988888   899999999999


Q ss_pred             CCC-CEEEEEeCCCeEEEEE
Q 021925          201 ADG-SHFLTGSLDKSAKLWD  219 (305)
Q Consensus       201 ~~~-~~l~~~~~dg~i~iwd  219 (305)
                      |.. ..+|+++.||.|++||
T Consensus       484 P~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  484 PVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCCcceeEecccCceeEecC
Confidence            954 5799999999999996

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.6e-27  Score=168.50  Aligned_cols=245  Identities=18%  Similarity=0.251  Sum_probs=190.6

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC------C-----e----eeEEecCCCcceEEEEEcCCCcEE
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------G-----E----RLGTYRGHNGAVWCCDVSRDSMTL   67 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~------~-----~----~~~~~~~~~~~v~~i~~~~~~~~l   67 (305)
                      .+.+......|.+++|+|.|.+.|.|+..++.+|-....      +     +    ..++-+.|.+.|.|.+|+|+|++|
T Consensus        25 ~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geli  104 (350)
T KOG0641|consen   25 AINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELI  104 (350)
T ss_pred             EEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeE
Confidence            345556678899999999999999999999998874321      1     1    112334689999999999999999


Q ss_pred             EEEeCCCcEEEEecCCCCee-----EEEe-eCCCceEEEEecC----CceEEEeCCcceeeeeeEEEEEeecccCCCCCc
Q 021925           68 ITGSADQTAKLWNVETGAQL-----FTFN-FDSPARSVDFAVG----DKLAVITTDPFMELNSAIHVKRIARDPADQGGE  137 (305)
Q Consensus        68 ~s~~~dg~v~vwd~~~~~~~-----~~~~-~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (305)
                      ++|+.|++|++.-+....+.     ..++ +.+.++.++|..+    +.+++.++.+.    ..+.+.+      -..++
T Consensus       105 atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd----c~iy~td------c~~g~  174 (350)
T KOG0641|consen  105 ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD----CKIYITD------CGRGQ  174 (350)
T ss_pred             EecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc----ceEEEee------cCCCC
Confidence            99999999999866533221     2233 7889999999764    34555444321    1222222      14567


Q ss_pred             eEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccC----CccceEEEEEcCCCCEEEEEeCCC
Q 021925          138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG----HKKTITSLAKAADGSHFLTGSLDK  213 (305)
Q Consensus       138 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg  213 (305)
                      ..+.+.+|.+.|.++ ++-++-++++|++|.+|++||++-..++..+.....    ....|.+++..|.|++|++|-.|.
T Consensus       175 ~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds  253 (350)
T KOG0641|consen  175 GFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS  253 (350)
T ss_pred             cceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence            788899999999876 344588999999999999999998888887753211    236799999999999999999999


Q ss_pred             eEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEE
Q 021925          214 SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFM  258 (305)
Q Consensus       214 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~  258 (305)
                      ...+||++.+++++.+. |...|.|+.|+|...++++|+.|..+.+
T Consensus       254 sc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikl  299 (350)
T KOG0641|consen  254 SCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKL  299 (350)
T ss_pred             ceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEE
Confidence            99999999999999998 8899999999999999999998887433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.2e-28  Score=204.64  Aligned_cols=242  Identities=26%  Similarity=0.431  Sum_probs=207.3

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      +.||.+.|.++++..-+..+++|+.|.++++||..+|++...+.+|.+.|.++...+  ..+++|+.|.+|++|+++++.
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~  322 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA  322 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc
Confidence            789999999999988788999999999999999999999999999999999998764  478889999999999999999


Q ss_pred             eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      .+..+. +..+|.++...  +.+++.++.     ++.+.+|+..      ..+++..+.+|...|.++.+.+. +.+++|
T Consensus       323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~-----d~~v~VW~~~------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sg  388 (537)
T KOG0274|consen  323 CLNLLRGHTGPVNCVQLD--EPLLVSGSY-----DGTVKVWDPR------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSG  388 (537)
T ss_pred             eEEEeccccccEEEEEec--CCEEEEEec-----CceEEEEEhh------hceeeeeecCCcceEEEEEecCc-ceEEee
Confidence            999999 99999999998  555555543     5567778775      56899999999999999988765 889999


Q ss_pred             eCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee--CCCeeEEEec
Q 021925          165 GEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMS  241 (305)
Q Consensus       165 ~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~  241 (305)
                      +.|+.|++||+++. +++..+.   +|...+..+.+  .++.|++++.|++|++||..++++++.+..  ...|.++++.
T Consensus       389 s~D~~IkvWdl~~~~~c~~tl~---~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~  463 (537)
T KOG0274|consen  389 SLDTTIKVWDLRTKRKCIHTLQ---GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG  463 (537)
T ss_pred             eeccceEeecCCchhhhhhhhc---CCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence            99999999999999 8888887   78888866655  467999999999999999999999999985  3677777776


Q ss_pred             CCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhc
Q 021925          242 PLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNL  275 (305)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (305)
                        ...+++++.++.     +++|++.......++
T Consensus       464 --~~~il~s~~~~~-----~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  464 --KEEILCSSDDGS-----VKLWDLRSGTLIRTL  490 (537)
T ss_pred             --cceEEEEecCCe-----eEEEecccCchhhhh
Confidence              456777777776     677776666655444

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.7e-28  Score=180.96  Aligned_cols=240  Identities=18%  Similarity=0.310  Sum_probs=199.1

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCc--EEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~v~vwd~~   82 (305)
                      .++.|.++|++++.+  +.++|+|+.|-+|+|||+++...+..+-.|.+.|+++.|.++-.  .|++|+.||.|.+|+..
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            478999999999985  89999999999999999999999999999999999999998654  89999999999999999


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      .-.++..++ +...|+.++.+|.+++.+..++     +..++.|++.+...    ..+..+   ....+.+.|+|.|.++
T Consensus       116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~-----D~~lr~WNLV~Gr~----a~v~~L---~~~at~v~w~~~Gd~F  183 (362)
T KOG0294|consen  116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGG-----DQVLRTWNLVRGRV----AFVLNL---KNKATLVSWSPQGDHF  183 (362)
T ss_pred             CeEEeeeecccccccceeEecCCCceEEEEcC-----CceeeeehhhcCcc----ceeecc---CCcceeeEEcCCCCEE
Confidence            998888888 8888999999999999888776     56677777764321    111111   2233449999999999


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEe
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM  240 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~  240 (305)
                      +.+..+ .|-+|.+.+......+.    ....+.++.|- ++..|++|+.|+.|++||..+..+...+. |..+|.++.+
T Consensus       184 ~v~~~~-~i~i~q~d~A~v~~~i~----~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~  257 (362)
T KOG0294|consen  184 VVSGRN-KIDIYQLDNASVFREIE----NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS  257 (362)
T ss_pred             EEEecc-EEEEEecccHhHhhhhh----ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence            888775 58999998877776665    33556677665 56789999999999999999998888887 9999999884


Q ss_pred             --cCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925          241 --SPLLDHVCIGEPQTIKFMLLVYLFVLFLD  269 (305)
Q Consensus       241 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  269 (305)
                        .|++.+|+++++||.     +.+|+..++
T Consensus       258 ~~~~~~~~lvTaSSDG~-----I~vWd~~~~  283 (362)
T KOG0294|consen  258 YTNPEHEYLVTASSDGF-----IKVWDIDME  283 (362)
T ss_pred             EecCCceEEEEeccCce-----EEEEEcccc
Confidence              578899999999998     777777666

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=6.2e-29  Score=179.32  Aligned_cols=238  Identities=16%  Similarity=0.197  Sum_probs=195.4

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-----CCcEEEE
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-----DQTAKLW   79 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-----dg~v~vw   79 (305)
                      ++.||++.|.|+..+.+.+.+++|+.|.++++||+++|+++.+++ ...+|..+.|+++|++++.+..     .+.|.++
T Consensus        47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f  125 (327)
T KOG0643|consen   47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVF  125 (327)
T ss_pred             eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence            478999999999999999999999999999999999999999998 6789999999999988776644     4779999


Q ss_pred             ecC-------CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925           80 NVE-------TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (305)
Q Consensus        80 d~~-------~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (305)
                      |++       +.++...+. ..+.+..+.|.|-+..++.+..     .+.+..|+....     .+.+...+.|...|+.
T Consensus       126 di~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe-----~G~is~~da~~g-----~~~v~s~~~h~~~Ind  195 (327)
T KOG0643|consen  126 DIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE-----DGSISIYDARTG-----KELVDSDEEHSSKIND  195 (327)
T ss_pred             EccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC-----CCcEEEEEcccC-----ceeeechhhhcccccc
Confidence            998       445555555 6788999999999999999876     667777776532     2455566789999999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCe--EEEEEcCCc------
Q 021925          152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS--AKLWDARTL------  223 (305)
Q Consensus       152 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~------  223 (305)
                      ++++|+..++++++.|.+-++||.++-+.++++.    ...+|++.+++|....++.|+....  |.--+.+.+      
T Consensus       196 ~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~----te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF  271 (327)
T KOG0643|consen  196 LQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT----TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF  271 (327)
T ss_pred             ccccCCcceEEecccCccceeeeccceeeEEEee----ecccccceecccccceEEecCCceeeeeeeecccccchhhhH
Confidence            9999999999999999999999999999999996    6789999999997767666554322  222222222      


Q ss_pred             ------eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925          224 ------ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKF  257 (305)
Q Consensus       224 ------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~  257 (305)
                            +.+..++ |-+||++++|+|+|+..++|+.|+...
T Consensus       272 yh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR  312 (327)
T KOG0643|consen  272 YHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR  312 (327)
T ss_pred             HHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence                  3444455 778999999999999999999999753

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.3e-29  Score=184.84  Aligned_cols=249  Identities=16%  Similarity=0.214  Sum_probs=192.5

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEee
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~   92 (305)
                      -.|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++|+.|+|+|.|..+++||+..|.+++.+..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            67999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec--c----CCCeeEEEEcCCCCEEEEeeC
Q 021925           93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG--P----QGRINRAVWGPLNRTIISAGE  166 (305)
Q Consensus        93 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~i~~~~~~~~~~~l~~~~~  166 (305)
                      +++|..+.|+|.....+++.-    +.....+.....        +.+..-.  .    .....+..|.+.|+++++|..
T Consensus       106 ~spv~~~q~hp~k~n~~va~~----~~~sp~vi~~s~--------~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts  173 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATI----MEESPVVIDFSD--------PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS  173 (405)
T ss_pred             cCccceeeeccccCCeEEEEE----ecCCcEEEEecC--------CceeeccCCCccccccccccccccCCCCEEEEecC
Confidence            999999999996654444431    111111111110        0111100  0    111223468899999999999


Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-------eEE--EEEe---eCCC
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-------ELI--KTYV---TERP  234 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~---~~~~  234 (305)
                      .|.+.++|..+.+++..++..  ....|..+.++..|++|+.-+.|..||.|+++.-       ++.  +.+.   ....
T Consensus       174 KGkllv~~a~t~e~vas~rit--s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~  251 (405)
T KOG1273|consen  174 KGKLLVYDAETLECVASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ  251 (405)
T ss_pred             cceEEEEecchheeeeeeeec--hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence            999999999999998888732  2478999999999999999999999999998732       111  2222   2334


Q ss_pred             eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhccccc
Q 021925          235 VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSA  279 (305)
Q Consensus       235 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (305)
                      =.+++|+.+|.++++|+..-..    +++|......+..-+++..
T Consensus       252 Wk~ccfs~dgeYv~a~s~~aHa----LYIWE~~~GsLVKILhG~k  292 (405)
T KOG1273|consen  252 WKKCCFSGDGEYVCAGSARAHA----LYIWEKSIGSLVKILHGTK  292 (405)
T ss_pred             hhheeecCCccEEEecccccee----EEEEecCCcceeeeecCCc
Confidence            4688999999999998855544    8888887777776666544

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=3.5e-27  Score=196.57  Aligned_cols=217  Identities=12%  Similarity=0.120  Sum_probs=165.3

Q ss_pred             eeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCCC--------eeEEEe-eCCCce
Q 021925           28 CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGA--------QLFTFN-FDSPAR   97 (305)
Q Consensus        28 ~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~~--------~~~~~~-~~~~v~   97 (305)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++.        .+..+. +...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            556789999998887888899999999999999996 7899999999999999997642        122333 778899


Q ss_pred             EEEEecCCceEE-EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 021925           98 SVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE  176 (305)
Q Consensus        98 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  176 (305)
                      +++|+|++..++ +++.     ++.+.+|++...      +....+. |...|.+++|+|+|++|++++.|+.|+|||++
T Consensus       130 sVaf~P~g~~iLaSgS~-----DgtIrIWDl~tg------~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~R  197 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGF-----DSFVNIWDIENE------KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR  197 (568)
T ss_pred             EEEECCCCCeEEEEEeC-----CCeEEEEECCCC------cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence            999999887654 4443     567778887532      3333443 56789999999999999999999999999999


Q ss_pred             CCcEeeeeccccCCccceEE-----EEEcCCCCEEEEEeCCC----eEEEEEcCC-ceEEEEEeeCCCee---EEEecCC
Q 021925          177 TGKLLKESDKETGHKKTITS-----LAKAADGSHFLTGSLDK----SAKLWDART-LELIKTYVTERPVN---AVTMSPL  243 (305)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~v~---~~~~~~~  243 (305)
                      +++.+..+.   +|.+.+..     ..|++++.+|++++.|+    +|++||+++ .+++..+.+.....   .....++
T Consensus       198 sg~~i~tl~---gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~t  274 (568)
T PTZ00420        198 KQEIASSFH---IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDEST  274 (568)
T ss_pred             CCcEEEEEe---cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCC
Confidence            999888876   67665433     33568889999988774    799999995 56776665433322   2333456


Q ss_pred             CCcEEEeeCCcEEEEE
Q 021925          244 LDHVCIGEPQTIKFML  259 (305)
Q Consensus       244 ~~~l~~~~~~~~~~~~  259 (305)
                      +.++++|++|+...++
T Consensus       275 g~l~lsGkGD~tIr~~  290 (568)
T PTZ00420        275 GLIYLIGKGDGNCRYY  290 (568)
T ss_pred             CCEEEEEECCCeEEEE
Confidence            8888888888874333

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.5e-29  Score=191.61  Aligned_cols=208  Identities=25%  Similarity=0.464  Sum_probs=159.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ++.||..+|..+.||||.++|++|+.|..+.+||+.+|+....+.. |...+.+++|.|||..+++|+.|+++..||+..
T Consensus       264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg  343 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG  343 (519)
T ss_pred             eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence            5789999999999999999999999999999999999998877753 457899999999999999999999999999874


Q ss_pred             CCeeEEEe--eCCCceEEEEecCCceEEEeCC-cceee-----------------------------------eeeEEEE
Q 021925           84 GAQLFTFN--FDSPARSVDFAVGDKLAVITTD-PFMEL-----------------------------------NSAIHVK  125 (305)
Q Consensus        84 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~-~~~~~-----------------------------------~~~~~~~  125 (305)
                      . .....+  ....+.+++.++||+.++.... ..+..                                   ...+..|
T Consensus       344 n-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LW  422 (519)
T KOG0293|consen  344 N-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLW  422 (519)
T ss_pred             c-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence            3 333333  2345667777777766555432 11111                                   2233344


Q ss_pred             EeecccCCCCCceEEEEeccCCC--eeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-
Q 021925          126 RIARDPADQGGESVLILKGPQGR--INRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-  201 (305)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-  201 (305)
                      ++.      ....++.+.||+..  +-.-+|.. +..++++|++|++|+||+..+++++..+.   +|...|++++|+| 
T Consensus       423 Dl~------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls---GHs~~vNcVswNP~  493 (519)
T KOG0293|consen  423 DLE------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS---GHSKTVNCVSWNPA  493 (519)
T ss_pred             ecc------hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec---CCcceeeEEecCCC
Confidence            432      23445556666644  22334443 34799999999999999999999999998   9999999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEEcCC
Q 021925          202 DGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       202 ~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      +-.++|+++.||+|+||....
T Consensus       494 ~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  494 DPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CHHHhhccCCCCeEEEecCCc
Confidence            456799999999999998754

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.97  E-value=3e-28  Score=178.31  Aligned_cols=208  Identities=18%  Similarity=0.298  Sum_probs=169.7

Q ss_pred             ecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCee----------eE-----EecCCCcceEEEEEcC-CCcEEE
Q 021925            6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER----------LG-----TYRGHNGAVWCCDVSR-DSMTLI   68 (305)
Q Consensus         6 l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~----------~~-----~~~~~~~~v~~i~~~~-~~~~l~   68 (305)
                      .+.|.+.|+++...+ .|+++++|+.||.|.+||+++...          +.     .-.+|+-.|.++.|-| |...+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            467999999999998 889999999999999999985321          11     1135788999999999 777899


Q ss_pred             EEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecC---CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925           69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (305)
Q Consensus        69 s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (305)
                      +++.|.+++|||..+.+....++.++.|.+-+++|-   ..+++++..     ...+++-++      ..+...+.+.+|
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr-----~~~VrLCDi------~SGs~sH~LsGH  187 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTR-----DVQVRLCDI------ASGSFSHTLSGH  187 (397)
T ss_pred             cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecC-----CCcEEEEec------cCCcceeeeccc
Confidence            999999999999999999999999999999999984   445666554     223333333      456788899999


Q ss_pred             CCCeeEEEEcCCCCE-EEEeeCCCcEEEEeCCCC-cEeee-----------eccccCCccceEEEEEcCCCCEEEEEeCC
Q 021925          146 QGRINRAVWGPLNRT-IISAGEDAIVRIWDTETG-KLLKE-----------SDKETGHKKTITSLAKAADGSHFLTGSLD  212 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~-~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  212 (305)
                      .+.|.++.|+|...+ |++|+.||.|++||++.. .+...           ++....|.+.|+.++|..++.++++++.|
T Consensus       188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd  267 (397)
T KOG4283|consen  188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD  267 (397)
T ss_pred             cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence            999999999998875 668999999999999854 22222           22234688999999999999999999999


Q ss_pred             CeEEEEEcCCce
Q 021925          213 KSAKLWDARTLE  224 (305)
Q Consensus       213 g~i~iwd~~~~~  224 (305)
                      .++++|+..+|+
T Consensus       268 ~r~r~wn~~~G~  279 (397)
T KOG4283|consen  268 DRIRVWNMESGR  279 (397)
T ss_pred             cceEEeecccCc
Confidence            999999998764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.6e-28  Score=177.65  Aligned_cols=238  Identities=16%  Similarity=0.199  Sum_probs=185.0

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCc--EEEEEeCCCcEEEEe
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWN   80 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~v~vwd   80 (305)
                      |.....|.++|.+++|+.||..+++|+.|+.+++||+.+++ +..+..|.++|..+.|-+...  .|+|||.|++|+.||
T Consensus        65 ~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD  143 (347)
T KOG0647|consen   65 PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD  143 (347)
T ss_pred             chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence            33456799999999999999999999999999999999995 566778999999999988554  899999999999999


Q ss_pred             cCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      .+...++.++..+..+.++..-..-..++++       ...+.++.+.....    +.......-+-.+.+++..++...
T Consensus       144 ~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata-------~r~i~vynL~n~~t----e~k~~~SpLk~Q~R~va~f~d~~~  212 (347)
T KOG0647|consen  144 TRSSNPVATLQLPERVYAADVLYPMAVVATA-------ERHIAVYNLENPPT----EFKRIESPLKWQTRCVACFQDKDG  212 (347)
T ss_pred             cCCCCeeeeeeccceeeehhccCceeEEEec-------CCcEEEEEcCCCcc----hhhhhcCcccceeeEEEEEecCCc
Confidence            9999999999999998888765443333333       23344444432211    111111223446789999999988


Q ss_pred             EEEeeCCCcEEEEeCCCCcEe--eeecccc------CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-e
Q 021925          161 IISAGEDAIVRIWDTETGKLL--KESDKET------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T  231 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~--~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~  231 (305)
                      .+.|+.+|.+.+..+..+.+.  ..++.++      +.-..|++++|+|....|+|++.||+..+||-.....+++.. +
T Consensus       213 ~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~  292 (347)
T KOG0647|consen  213 FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH  292 (347)
T ss_pred             eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence            899999999999998876332  2222111      112468999999999999999999999999988887777766 8


Q ss_pred             CCCeeEEEecCCCCcEEEeeC
Q 021925          232 ERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       232 ~~~v~~~~~~~~~~~l~~~~~  252 (305)
                      +.+|++.+|+.+|.+++-+.+
T Consensus       293 ~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  293 PQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             CCccceeEecCCCCEEEEEee
Confidence            999999999999999887753

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.2e-28  Score=208.35  Aligned_cols=213  Identities=23%  Similarity=0.354  Sum_probs=174.2

Q ss_pred             CceEecccccceEEEEEcCCCCEEEEee--CCCceEEEEcCC------------CeeeEEecCCCcceEEEEEcCCCcEE
Q 021925            2 RPILMKGHERPLTYLKYNKDGDLLFSCA--KDHTPTVWFADN------------GERLGTYRGHNGAVWCCDVSRDSMTL   67 (305)
Q Consensus         2 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~--~dg~v~iw~~~~------------~~~~~~~~~~~~~v~~i~~~~~~~~l   67 (305)
                      +|..+..++..|.++..+|+|..+|||+  .||.++||+.+.            .+.+.+...|.+.|.|+.|+|||++|
T Consensus         5 kp~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~l   84 (942)
T KOG0973|consen    5 KPTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYL   84 (942)
T ss_pred             cccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeE
Confidence            4555666678899999999999999999  899999997652            23456677899999999999999999


Q ss_pred             EEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC
Q 021925           68 ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (305)
Q Consensus        68 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (305)
                      |+|+.|+.|.||+......-..+          .+.+               +         ....+..+.+..+.+|.+
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~f----------gs~g---------------~---------~~~vE~wk~~~~l~~H~~  130 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVF----------GSTG---------------G---------AKNVESWKVVSILRGHDS  130 (942)
T ss_pred             eeccCcceEEEeeecccCCcccc----------cccc---------------c---------ccccceeeEEEEEecCCC
Confidence            99999999999997641000000          0000               0         001133467788899999


Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  227 (305)
                      .|..++|+|++.++++++.|++|.+||.++.+.++.+.   +|.+.|..+.|+|-|++||+-+.|++|++|++.+....+
T Consensus       131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~---~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k  207 (942)
T KOG0973|consen  131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR---GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK  207 (942)
T ss_pred             ccceeccCCCccEEEEecccceEEEEccccceeeeeee---cccccccceEECCccCeeeeecCCceEEEEEcccceeeE
Confidence            99999999999999999999999999999998888887   899999999999999999999999999999988877776


Q ss_pred             EEe-------eCCCeeEEEecCCCCcEEEee
Q 021925          228 TYV-------TERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       228 ~~~-------~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      .+.       ....+..+.|||||++|++..
T Consensus       208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  208 SITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             eeccchhhCCCcceeeecccCCCcCeecchh
Confidence            665       223478899999999999873

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-28  Score=203.15  Aligned_cols=208  Identities=22%  Similarity=0.303  Sum_probs=165.9

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      .+.||.+.|.++.||.++ +|++++.|++|++|++...++++.|. |.+.|+|++|+| |.+++++|+-||.++||++..
T Consensus       364 ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d  441 (712)
T KOG0283|consen  364 EFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD  441 (712)
T ss_pred             hhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCc
Confidence            478999999999999876 99999999999999999999999998 999999999999 889999999999999999998


Q ss_pred             CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE----EEeccCCCeeEEEEcCCC-
Q 021925           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL----ILKGPQGRINRAVWGPLN-  158 (305)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~-  158 (305)
                      .+.+.-......|++++|.|+|+..++++-.     +...++.......... ..+.    .-..|. .|+.+.|.|.. 
T Consensus       442 ~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~-----G~C~fY~t~~lk~~~~-~~I~~~~~Kk~~~~-rITG~Q~~p~~~  514 (712)
T KOG0283|consen  442 KKVVDWNDLRDLITAVCYSPDGKGAVIGTFN-----GYCRFYDTEGLKLVSD-FHIRLHNKKKKQGK-RITGLQFFPGDP  514 (712)
T ss_pred             CeeEeehhhhhhheeEEeccCCceEEEEEec-----cEEEEEEccCCeEEEe-eeEeeccCccccCc-eeeeeEecCCCC
Confidence            8888777788999999999999999998743     3333333221110000 0000    011223 79999999865 


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      ..+++.+.|..|+|+|.++.+++..+........ -....|+.||++|++++.|..|++|+...
T Consensus       515 ~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S-Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  515 DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS-QISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             CeEEEecCCCceEEEeccchhhhhhhcccccCCc-ceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            4578888999999999998888888874433333 34568899999999999999999999743

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=2.1e-27  Score=179.16  Aligned_cols=237  Identities=24%  Similarity=0.387  Sum_probs=185.8

Q ss_pred             EecccccceEEEEEcCCC---CEEEEeeCCCceEEEEcCCCeee----EEecCCCcceEEEEEcCCCcEEEEEeCCCcEE
Q 021925            5 LMKGHERPLTYLKYNKDG---DLLFSCAKDHTPTVWFADNGERL----GTYRGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~---~~l~s~~~dg~v~iw~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~   77 (305)
                      .+.||.++|.+++|....   ..+++++.|.++++|..+.++..    +.-.+|...|.++...++|..+++|+.|.+|+
T Consensus       139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lk  218 (423)
T KOG0313|consen  139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLK  218 (423)
T ss_pred             EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceee
Confidence            578999999998885533   35999999999999988876532    33358999999999999999999999999999


Q ss_pred             EEecCC-------------------------CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeeccc
Q 021925           78 LWNVET-------------------------GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP  131 (305)
Q Consensus        78 vwd~~~-------------------------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (305)
                      +|+.++                         ..++..+. |..+|.++.|++.+....++      .+..+..|++... 
T Consensus       219 iWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~S------wDHTIk~WDletg-  291 (423)
T KOG0313|consen  219 IWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVS------WDHTIKVWDLETG-  291 (423)
T ss_pred             ecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeec------ccceEEEEEeecc-
Confidence            999321                         11233333 77889999999954444443      3677888888643 


Q ss_pred             CCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEe
Q 021925          132 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS  210 (305)
Q Consensus       132 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~  210 (305)
                           .....+. ....++++..+|..++|++|+.|..+++||.+++.-........+|...|.++.|+|... .|++|+
T Consensus       292 -----~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S  365 (423)
T KOG0313|consen  292 -----GLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS  365 (423)
T ss_pred             -----cceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe
Confidence                 2222222 345789999999999999999999999999998653322223348999999999999654 588999


Q ss_pred             CCCeEEEEEcCCce-EEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          211 LDKSAKLWDARTLE-LIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       211 ~dg~i~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      .|+++++||+++.+ ++..+. |...|.++.|+.. ..|++|+.|..
T Consensus       366 ~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~  411 (423)
T KOG0313|consen  366 YDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGADNK  411 (423)
T ss_pred             cCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCcce
Confidence            99999999999887 888887 8999999999865 47888888876

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.2e-28  Score=180.15  Aligned_cols=245  Identities=25%  Similarity=0.438  Sum_probs=198.8

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC--
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE--   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~--   82 (305)
                      .+.||++.|..++-......+.+++.|.+.+||.++++.++.++.+|.+.|+++.|++.+.++++++.|++-.||...  
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~  222 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVN  222 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhc
Confidence            478999999999998888899999999999999999999999999999999999999999999999999999999721  


Q ss_pred             --CCC------------------------------------eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEE
Q 021925           83 --TGA------------------------------------QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH  123 (305)
Q Consensus        83 --~~~------------------------------------~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (305)
                        ..+                                    ++..+. +...|.+..|...+..++.++     ++....
T Consensus       223 ~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS-----WDRTAn  297 (481)
T KOG0300|consen  223 WEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS-----WDRTAN  297 (481)
T ss_pred             CcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee-----ccccce
Confidence              000                                    011111 344555556666666666553     344555


Q ss_pred             EEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC
Q 021925          124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG  203 (305)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  203 (305)
                      +|+.      +.++.+..+.+|....+.++-+|..+++++++.|.+.++||.+.  .+.....+.+|...|+++.|..+.
T Consensus       298 lwDV------Etge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd  369 (481)
T KOG0300|consen  298 LWDV------ETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDD  369 (481)
T ss_pred             eeee------ccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCC
Confidence            5665      45788999999999999999999999999999999999999983  344433444999999999998765


Q ss_pred             CEEEEEeCCCeEEEEEcCCc-eEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          204 SHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       204 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                       .+++|+.|.+|++||+++. .++.+++..++++.++.+..++.|+.-.++..     +.++++..
T Consensus       370 -~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRq-----vRlfDlnG  429 (481)
T KOG0300|consen  370 -RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQ-----VRLFDLNG  429 (481)
T ss_pred             -ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCce-----EEEEecCC
Confidence             5899999999999999976 57888999999999999999999988876665     44554443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.7e-27  Score=183.94  Aligned_cols=202  Identities=19%  Similarity=0.308  Sum_probs=177.7

Q ss_pred             EecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+.+|+.+|..+.|+| ++..+++|+.|+.+++||+.+......+.+|++.|.|.+|+| ++..++|||.||+|++||++
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence            4789999999999999 556778888899999999999887778999999999999999 55689999999999999999


Q ss_pred             CC-CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           83 TG-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        83 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      +. ..+.+++++.+|..+.+-|.|..++.+++      ..+++|++..     .++.+.....|...|+|+++..++..|
T Consensus       185 ~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG------n~vkVWDl~~-----G~qll~~~~~H~KtVTcL~l~s~~~rL  253 (487)
T KOG0310|consen  185 SLTSRVVELNHGCPVESVLALPSGSLIASAGG------NSVKVWDLTT-----GGQLLTSMFNHNKTVTCLRLASDSTRL  253 (487)
T ss_pred             cCCceeEEecCCCceeeEEEcCCCCEEEEcCC------CeEEEEEecC-----CceehhhhhcccceEEEEEeecCCceE
Confidence            87 78888999999999999999999999885      4567777753     234445555699999999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      ++|+-|+.+++||+.+.+.+..+.    -.++|.+++.+|+++.++.|..||.+.+-+..
T Consensus       254 lS~sLD~~VKVfd~t~~Kvv~s~~----~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  254 LSGSLDRHVKVFDTTNYKVVHSWK----YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             eecccccceEEEEccceEEEEeee----cccceeeEEecCCCceEEEecccceeeeehhh
Confidence            999999999999998889888885    78999999999999999999999988777443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=1.6e-27  Score=183.59  Aligned_cols=245  Identities=13%  Similarity=0.221  Sum_probs=187.0

Q ss_pred             cccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCe----------eeEEecCCCcceEEEEEcCC-CcEEEEEeCCC
Q 021925            7 KGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE----------RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQ   74 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~----------~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg   74 (305)
                      --|.+.|+.+++-|. ...+|+.+..+.|.|||..+..          +-.++.+|...=.+++|++. .-.|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            358999999999994 4577778889999999976421          22377889987788999984 45899999999


Q ss_pred             cEEEEecCCCCe-------eEEEe-eCCCceEEEEecCCceEE-EeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925           75 TAKLWNVETGAQ-------LFTFN-FDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (305)
Q Consensus        75 ~v~vwd~~~~~~-------~~~~~-~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (305)
                      +|.+||+.....       ...+. +...|..++|++-...++ .+++     ++.+.+|+++..    ..++.....+|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d-----d~~L~iwD~R~~----~~~~~~~~~ah  271 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD-----DGKLMIWDTRSN----TSKPSHSVKAH  271 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC-----CCeEEEEEcCCC----CCCCccccccc
Confidence            999999875433       22233 888999999999655444 4443     556677777652    44667778899


Q ss_pred             CCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCC
Q 021925          146 QGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       146 ~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~  222 (305)
                      .+.++|++|+|-+ ..||+|+.|++|++||+|+-+ ++..+.   +|...|.++.|+|+ ...||+++.|+++.+||+..
T Consensus       272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e---~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE---GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc---CCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            9999999999965 678899999999999999743 455555   89999999999995 45789999999999999874


Q ss_pred             ceE--------------EEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          223 LEL--------------IKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       223 ~~~--------------~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      -..              +.... |...|..+.|+|+.+++++.-.++..    +.+|...
T Consensus       349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~----LqIW~~s  404 (422)
T KOG0264|consen  349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI----LQIWQMA  404 (422)
T ss_pred             cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce----EEEeecc
Confidence            221              22222 66789999999999987766544444    6666543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=1.4e-26  Score=173.88  Aligned_cols=210  Identities=19%  Similarity=0.262  Sum_probs=174.8

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      +..+.||++.|+++.|+.+|.+||||+.+|.|+||+..++.....+...-+.+.=+.|+|.+..|+.|+.||.+-+|.+.
T Consensus        99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip  178 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP  178 (399)
T ss_pred             eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence            35688999999999999999999999999999999999999888887666778889999999999999999999999999


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC-----------------------------
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA-----------------------------  132 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  132 (305)
                      ++...+.+. +..++.+=.|.|+|+.++++.+     ++.+.+|+......                             
T Consensus       179 ~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-----dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~  253 (399)
T KOG0296|consen  179 SQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-----DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS  253 (399)
T ss_pred             CcceeeEecCCCCCcccccccCCCceEEEEec-----CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence            876666666 8888999999999999888765     22222222211100                             


Q ss_pred             ------------------C------------------------------------------CCCceEEEEeccCCCeeEE
Q 021925          133 ------------------D------------------------------------------QGGESVLILKGPQGRINRA  152 (305)
Q Consensus       133 ------------------~------------------------------------------~~~~~~~~~~~~~~~i~~~  152 (305)
                                        .                                          ......+..-.|...|..+
T Consensus       254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l  333 (399)
T KOG0296|consen  254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL  333 (399)
T ss_pred             CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence                              0                                          0001113334677889999


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       153 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      .|-+ ..+|++++.+|.|+.||.++|+++..+.   +|...|.+++++|+.++++++|.|++.+|++..
T Consensus       334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~---GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYT---GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEcC-cchheeeccCceEEeeeccccceEEEEe---cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9998 7899999999999999999999999998   999999999999999999999999999999864

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.5e-26  Score=192.48  Aligned_cols=243  Identities=19%  Similarity=0.277  Sum_probs=200.2

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC-eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      .+|+..-+.++|.|+|+.|++++.||.|++|+..+. +...++..+...|.+++..  +.+|++|+.+++|.+|.+.+++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            379999999999999999999999999999987655 4444555577888888765  4489999999999999999887


Q ss_pred             eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      .-..+. ..-++++++++.+|++++.++++     ..+.+.+..      .......+++|+.+|.++.++|++++||+.
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD-----~~vK~~~~~------D~s~~~~lrgh~apVl~l~~~p~~~fLAvs  156 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSDD-----TAVKLLNLD------DSSQEKVLRGHDAPVLQLSYDPKGNFLAVS  156 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecCc-----eeEEEEecc------ccchheeecccCCceeeeeEcCCCCEEEEE
Confidence            764443 78889999999999999999873     334443332      235667889999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCcEeeeeccccC-----CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCee
Q 021925          165 GEDAIVRIWDTETGKLLKESDKETG-----HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVN  236 (305)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~  236 (305)
                      +-||.|++||+.++.....+.....     ....+..++|+|+|..|+..+.|+.|++|+..+++....+.   +...+.
T Consensus       157 s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~  236 (933)
T KOG1274|consen  157 SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS  236 (933)
T ss_pred             ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence            9999999999999887766653221     14567889999998889999999999999999999888887   445599


Q ss_pred             EEEecCCCCcEEEeeCCcEEEEEEee
Q 021925          237 AVTMSPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                      +++|+|+|+|||+++-++.+.+|.+.
T Consensus       237 ~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  237 DLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             EEEEcCCCcEEeeeccCCcEEEEecc
Confidence            99999999999999999985544444

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.8e-28  Score=193.80  Aligned_cols=247  Identities=19%  Similarity=0.274  Sum_probs=206.8

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC--eeeEEecCCCcceEEEEE-cCCCcEEEEEeCCCcEEEEec
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDV-SRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~i~~-~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      .++.|.+.|+++....+|+.|+++|.|.+|++|+...+  -+..++..|.+.|.|++. .++...+|+||.|+.|.+||+
T Consensus        68 sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDi  147 (735)
T KOG0308|consen   68 SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDI  147 (735)
T ss_pred             hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEc
Confidence            47889999999999999999999999999999998876  577888999999999999 778889999999999999999


Q ss_pred             CCCC--eeEEEe----------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe
Q 021925           82 ETGA--QLFTFN----------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI  149 (305)
Q Consensus        82 ~~~~--~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (305)
                      +++.  .+.+++          ....+.+++.++.+..++.++.     ...+.+|+..      ..+.+..+++|...|
T Consensus       148 n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt-----ek~lr~wDpr------t~~kimkLrGHTdNV  216 (735)
T KOG0308|consen  148 NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT-----EKDLRLWDPR------TCKKIMKLRGHTDNV  216 (735)
T ss_pred             cCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc-----ccceEEeccc------cccceeeeeccccce
Confidence            9872  333222          4457888999999877777764     5566677664      346678889999999


Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eEEEE
Q 021925          150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKT  228 (305)
Q Consensus       150 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~  228 (305)
                      ..+..++||+.+++++.||+|++||+...+++.++.   .|...|+++..+|+=..+++|+.||.|..-|+++. +....
T Consensus       217 r~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~---vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli  293 (735)
T KOG0308|consen  217 RVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI---VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI  293 (735)
T ss_pred             EEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE---eccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence            999999999999999999999999999999999987   78999999999999999999999999999999984 55566


Q ss_pred             EeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925          229 YVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDI  270 (305)
Q Consensus       229 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  270 (305)
                      ++.+.+|..+..+...+-+-+++.++.     ++.|......
T Consensus       294 ck~daPv~~l~~~~~~~~~WvtTtds~-----I~rW~~~~~~  330 (735)
T KOG0308|consen  294 CKEDAPVLKLHLHEHDNSVWVTTTDSS-----IKRWKLEPDI  330 (735)
T ss_pred             ecCCCchhhhhhccccCCceeeecccc-----ceecCCcccc
Confidence            667888888888866555566666665     5666554443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.1e-28  Score=172.66  Aligned_cols=204  Identities=20%  Similarity=0.358  Sum_probs=173.2

Q ss_pred             EecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .++.|+.+|.++.|++ +++.+++++-|++|++|+...++.+.++.+|...|...+|+| .++.++++|.|+++++||++
T Consensus        99 ~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr  178 (311)
T KOG0277|consen   99 KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR  178 (311)
T ss_pred             HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence            4789999999999999 667788899999999999999999999999999999999999 67899999999999999998


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CE
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RT  160 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  160 (305)
                      .......+. +..++.++.|+.-+..+++.++    .++.++.|++....     .++..+.+|.-.|..++|||.. ..
T Consensus       179 ~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~l  249 (311)
T KOG0277|consen  179 SPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASL  249 (311)
T ss_pred             CCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhH
Confidence            665444455 7779999999996665555442    47788888887543     5678889999999999999976 68


Q ss_pred             EEEeeCCCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEc
Q 021925          161 IISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~  220 (305)
                      |++++.|-+++|||...+. .+.+..   .|..-+..+.|++ ++..+|+++.|+.++||+.
T Consensus       250 LaSasYDmT~riw~~~~~ds~~e~~~---~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  250 LASASYDMTVRIWDPERQDSAIETVD---HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccccceEEecccccchhhhhhhh---ccceEEeccccccccCceeeecccccceeeecc
Confidence            8899999999999998543 344444   6888999999998 5678999999999999984

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.7e-27  Score=193.54  Aligned_cols=247  Identities=17%  Similarity=0.172  Sum_probs=200.0

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC---CCcEEEEEeCCCcEEEEecCCC
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR---DSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      +.+-.+++++.+|+|++||+|..-|+++||++.+.+....+++|..+|.|+.++.   ..++|++++.|+-|.|+|+...
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            3456799999999999999999999999999999999999999999999999986   3478999999999999998654


Q ss_pred             -CeeEEEe-eCCCceEEEEecCC--ceEEEe-CCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925           85 -AQLFTFN-FDSPARSVDFAVGD--KLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (305)
Q Consensus        85 -~~~~~~~-~~~~v~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (305)
                       ..+.++. |...|+++.|...+  ..++.+ .+..+.+...-+...-.       ..+...-...+..+..++..|..+
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~-------~f~r~t~t~~ktTlYDm~Vdp~~k  609 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR-------LFPRHTQTLSKTTLYDMAVDPTSK  609 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce-------eccccccccccceEEEeeeCCCcc
Confidence             3445555 78899999999876  334433 33322222111000000       000111122345688999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  238 (305)
                      ++++++.|..|+|||+.++++.+.++...+|++....+...|.|.+|++.+.|.++.++|..+++++.+.. |...|+.+
T Consensus       610 ~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~  689 (1080)
T KOG1408|consen  610 LVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV  689 (1080)
T ss_pred             eEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee
Confidence            99999999999999999999999999888898999999999999999999999999999999999998877 88999999


Q ss_pred             EecCCCCcEEEeeCCcEEEEEEe
Q 021925          239 TMSPLLDHVCIGEPQTIKFMLLV  261 (305)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~  261 (305)
                      .|.+|-++|++.++|+.+++|-+
T Consensus       690 kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  690 KFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             eecccchhheeecCCceEEEEEC
Confidence            99999999999999999444433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.6e-27  Score=181.42  Aligned_cols=247  Identities=22%  Similarity=0.287  Sum_probs=205.2

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee----EE-------------e-cCCCcceEEEEEcCCCc
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL----GT-------------Y-RGHNGAVWCCDVSRDSM   65 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~----~~-------------~-~~~~~~v~~i~~~~~~~   65 (305)
                      +.+..|.-+|.+++++|+.++.++++.+|+|.-|++.+++..    .+             - ++|...+.+++.++||+
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            456789999999999999999999999999999998877532    11             1 26888999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec
Q 021925           66 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (305)
Q Consensus        66 ~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (305)
                      +|++|+.|..|.||+.++.+.+..+. +.+.|.+++|-.+...+++++.     +..+.+|.+..      ...+..+.+
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~-----Drsvkvw~~~~------~s~vetlyG  284 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA-----DRSVKVWSIDQ------LSYVETLYG  284 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec-----CCceEEEehhH------hHHHHHHhC
Confidence            99999999999999999999999977 8899999999998777776654     56677777643      345667889


Q ss_pred             cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  224 (305)
                      |++.|.++.....++.+-+|+.|+++++|++.....+ .+.   ++.+.+-|++|-.+ ..+++|+.+|.|.+|++.+.+
T Consensus       285 Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifr---g~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  285 HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFR---GGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK  359 (479)
T ss_pred             CccceeeechhcccceEEeccccceeEEEecccccee-eee---CCCCCeeeEEEecc-cceeeccCCceEEEeeecccC
Confidence            9999999999988888888889999999999544333 233   67889999999755 468999999999999999999


Q ss_pred             EEEEEe--e---CC--------CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925          225 LIKTYV--T---ER--------PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       225 ~~~~~~--~---~~--------~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
                      ++.+..  |   +.        .|++++..|..+++++|+.+|.     +++|......+
T Consensus       360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-----vrLW~i~~g~r  414 (479)
T KOG0299|consen  360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-----VRLWKIEDGLR  414 (479)
T ss_pred             ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-----eEEEEecCCcc
Confidence            988775  2   11        6889999999999999999998     77776655533

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-26  Score=169.84  Aligned_cols=220  Identities=19%  Similarity=0.287  Sum_probs=178.0

Q ss_pred             EecccccceEEEEEcCCCC--EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDGD--LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+..|.+.|+++.|.++-.  .|++|+.||.|.+|+...-+.+.++++|.+.|+.++.+|.+++-++.+.|+.+++||+-
T Consensus        78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV  157 (362)
T KOG0294|consen   78 ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV  157 (362)
T ss_pred             ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence            3567999999999999765  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      +|+.-...+.......+.|+|.|..+++.....      +.++.+....      ....+ .....+.++.|. ++..|+
T Consensus       158 ~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~------i~i~q~d~A~------v~~~i-~~~~r~l~~~~l-~~~~L~  223 (362)
T KOG0294|consen  158 RGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK------IDIYQLDNAS------VFREI-ENPKRILCATFL-DGSELL  223 (362)
T ss_pred             cCccceeeccCCcceeeEEcCCCCEEEEEeccE------EEEEecccHh------Hhhhh-hccccceeeeec-CCceEE
Confidence            999888888888888899999999887776433      3333332111      01111 111345556554 456899


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE--cCCCCEEEEEeCCCeEEEEEcCCc-----eEEEEEeeCCCe
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGSLDKSAKLWDARTL-----ELIKTYVTERPV  235 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~v  235 (305)
                      +|..|+.|.+||.....+...+.   +|...|..+.+  .|++.+|+++|+||.|++||++..     +++..+..+.++
T Consensus       224 vG~d~~~i~~~D~ds~~~~~~~~---AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~Rl  300 (362)
T KOG0294|consen  224 VGGDNEWISLKDTDSDTPLTEFL---AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRL  300 (362)
T ss_pred             EecCCceEEEeccCCCccceeee---cchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCcc
Confidence            99999999999999888877776   89999999984  457889999999999999999865     566666677777


Q ss_pred             eEEEec
Q 021925          236 NAVTMS  241 (305)
Q Consensus       236 ~~~~~~  241 (305)
                      +|+...
T Consensus       301 tCl~~~  306 (362)
T KOG0294|consen  301 TCLRVK  306 (362)
T ss_pred             ceeeeh
Confidence            777653

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=192.47  Aligned_cols=241  Identities=25%  Similarity=0.400  Sum_probs=202.4

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEE-ecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~   87 (305)
                      |...+.+..|+  ..++++++.|.+|++|+..++..+.. +.+|.+.|.++++...+.+|++|+.|.++++||..++++.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            56678888888  45899999999999999999998888 9999999999999876789999999999999999999999


Q ss_pred             EEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925           88 FTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (305)
Q Consensus        88 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  166 (305)
                      ..+. +...+.++...+.  .++.+     ..+..+.+|++.      .+..+..+.+|.++|.++..+  +.++++|+.
T Consensus       285 ~~l~gh~stv~~~~~~~~--~~~sg-----s~D~tVkVW~v~------n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~  349 (537)
T KOG0274|consen  285 HSLQGHTSSVRCLTIDPF--LLVSG-----SRDNTVKVWDVT------NGACLNLLRGHTGPVNCVQLD--EPLLVSGSY  349 (537)
T ss_pred             EEecCCCceEEEEEccCc--eEeec-----cCCceEEEEecc------CcceEEEeccccccEEEEEec--CCEEEEEec
Confidence            9998 7777777655432  33332     236778888885      457788888899999999998  889999999


Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eEEEEEe-eCCCeeEEEecCCC
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAVTMSPLL  244 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~  244 (305)
                      ||+|++||+.++++++.+.   +|...|.++.+.+. ..+++|+.|++|++||++++ +++.++. |.+-+.  .+...+
T Consensus       350 d~~v~VW~~~~~~cl~sl~---gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~--~l~~~~  423 (537)
T KOG0274|consen  350 DGTVKVWDPRTGKCLKSLS---GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS--SLLLRD  423 (537)
T ss_pred             CceEEEEEhhhceeeeeec---CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccc--cccccc
Confidence            9999999999999999998   89999999988765 78999999999999999999 8999988 444453  445567


Q ss_pred             CcEEEeeCCcEEEEEEeehhhhhhhhhhhhccc
Q 021925          245 DHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYC  277 (305)
Q Consensus       245 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (305)
                      +.|++++.|+.     +++|+.........+.+
T Consensus       424 ~~Lvs~~aD~~-----Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  424 NFLVSSSADGT-----IKLWDAEEGECLRTLEG  451 (537)
T ss_pred             ceeEecccccc-----EEEeecccCceeeeecc
Confidence            78999999986     88887766655554444

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.3e-28  Score=197.13  Aligned_cols=229  Identities=19%  Similarity=0.309  Sum_probs=184.7

Q ss_pred             eEEEEEcC-CCCEEEEeeCCCceEEEEcCC---CeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCee
Q 021925           13 LTYLKYNK-DGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus        13 v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~---~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~   87 (305)
                      +..++|+. +.++|||++..|.|.+||+..   .+.+..+..|+..+.+++|++ ...+|++||.||+|++||++..+..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence            55677875 567999999999999999986   566678889999999999998 5578999999999999999988887


Q ss_pred             EEEe-eCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           88 FTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        88 ~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      .++. ....++.++|+|.. ..++++.+     .+.+..|+++..     ..+...+..|.++|.++.|+|++.+||+|+
T Consensus       170 ~t~~~nSESiRDV~fsp~~~~~F~s~~d-----sG~lqlWDlRqp-----~r~~~k~~AH~GpV~c~nwhPnr~~lATGG  239 (839)
T KOG0269|consen  170 STFRSNSESIRDVKFSPGYGNKFASIHD-----SGYLQLWDLRQP-----DRCEKKLTAHNGPVLCLNWHPNREWLATGG  239 (839)
T ss_pred             ccccccchhhhceeeccCCCceEEEecC-----CceEEEeeccCc-----hhHHHHhhcccCceEEEeecCCCceeeecC
Confidence            7776 67789999999954 45555554     566778888743     356677889999999999999999999999


Q ss_pred             CCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCE-EEEEeC--CCeEEEEEcCCc-eEEEEEe-eCCCeeEE
Q 021925          166 EDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSH-FLTGSL--DKSAKLWDARTL-ELIKTYV-TERPVNAV  238 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~--dg~i~iwd~~~~-~~~~~~~-~~~~v~~~  238 (305)
                      .|++|+|||+.+.+.  ..++.    ...+|.++.|-|...+ |++++.  |-.|+|||++.. -+..++. |...++.+
T Consensus       240 RDK~vkiWd~t~~~~~~~~tIn----Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i  315 (839)
T KOG0269|consen  240 RDKMVKIWDMTDSRAKPKHTIN----TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI  315 (839)
T ss_pred             CCccEEEEeccCCCccceeEEe----ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence            999999999986543  33443    5678999999997665 666654  788999999865 4555666 78888999


Q ss_pred             EecC-CCCcEEEeeCCcE
Q 021925          239 TMSP-LLDHVCIGEPQTI  255 (305)
Q Consensus       239 ~~~~-~~~~l~~~~~~~~  255 (305)
                      +|.. |...+.+++.|+.
T Consensus       316 ~W~~~d~~~l~s~sKD~t  333 (839)
T KOG0269|consen  316 AWDSGDRINLWSCSKDGT  333 (839)
T ss_pred             eccCCCceeeEeecCccH
Confidence            9976 4445777888876

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.3e-28  Score=199.73  Aligned_cols=237  Identities=23%  Similarity=0.343  Sum_probs=210.8

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      +-.|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+++..+|+.|+.+|+|++||+++++
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            34688889999887788999999999999999988777778899999999999999999999999999999999999999


Q ss_pred             eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      .+.++. +...+.++.|+|-+.+.+.++.     +....+|++..      ..+.+.+.+|...+..+.|+|+|++++.|
T Consensus       104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gSt-----dtd~~iwD~Rk------~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g  172 (825)
T KOG0267|consen  104 IVRTLTGHLLNITSVDFHPYGEFFASGST-----DTDLKIWDIRK------KGCSHTYKSHTRVVDVLRLSPDGRWVASG  172 (825)
T ss_pred             hhhhhhccccCcceeeeccceEEeccccc-----cccceehhhhc------cCceeeecCCcceeEEEeecCCCceeecc
Confidence            888776 7888999999999999966554     66677777753      35778888999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCC
Q 021925          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPL  243 (305)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~  243 (305)
                      ++|..+++||+..|+....+.   .|.+.+.++.|+|..-++++|+.|+++++||+++.+.+.... ....|.+.+|+|+
T Consensus       173 ~ed~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~  249 (825)
T KOG0267|consen  173 GEDNTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPD  249 (825)
T ss_pred             CCcceeeeecccccccccccc---cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCC
Confidence            999999999999999999887   799999999999999899999999999999999998888776 5678999999999


Q ss_pred             CCcEEEeeCCcEE
Q 021925          244 LDHVCIGEPQTIK  256 (305)
Q Consensus       244 ~~~l~~~~~~~~~  256 (305)
                      +..+++|......
T Consensus       250 ~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  250 GKIVLSGEQISLS  262 (825)
T ss_pred             ceeeecCchhhhh
Confidence            9998888766543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=6.4e-28  Score=183.81  Aligned_cols=248  Identities=23%  Similarity=0.323  Sum_probs=203.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+..|.+.|..+.|-++...|++|+.|..|++|+....+  .+.++.+..++|+.++|.++++.+++++.|+.+++|++.
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd  249 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD  249 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence            467899999999999998899999999999999987665  677888888999999999999999999999999999999


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      +.+...++. |...+.++.|......++.++.     +..++.|++...      .+... .-..+.+..+..+  ...+
T Consensus       250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~-----DRtiK~WDl~k~------~C~kt-~l~~S~cnDI~~~--~~~~  315 (459)
T KOG0288|consen  250 SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSA-----DRTIKLWDLQKA------YCSKT-VLPGSQCNDIVCS--ISDV  315 (459)
T ss_pred             chhhhhhhcccccceeeehhhccccceeeccc-----cchhhhhhhhhh------heecc-ccccccccceEec--ceee
Confidence            999888887 8899999999888776555543     455566666432      11111 1123344555555  4457


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-----eCCCee
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-----TERPVN  236 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~v~  236 (305)
                      ++|..|++|++||+++..+....+    ..+.|+++..++++..|++++.|.++.+.|+++.+....+.     .....+
T Consensus       316 ~SgH~DkkvRfwD~Rs~~~~~sv~----~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt  391 (459)
T KOG0288|consen  316 ISGHFDKKVRFWDIRSADKTRSVP----LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT  391 (459)
T ss_pred             eecccccceEEEeccCCceeeEee----cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence            889999999999999999998886    45699999999999999999999999999999998888776     345688


Q ss_pred             EEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhc
Q 021925          237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNL  275 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (305)
                      .+.|||++.|+++|+.++.     +++|+.........+
T Consensus       392 rvvfSpd~~YvaAGS~dgs-----v~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  392 RVVFSPDGSYVAAGSADGS-----VYIWSVFTGKLEKVL  425 (459)
T ss_pred             eeEECCCCceeeeccCCCc-----EEEEEccCceEEEEe
Confidence            9999999999999999998     778877666655443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=3.5e-25  Score=182.65  Aligned_cols=241  Identities=19%  Similarity=0.276  Sum_probs=185.3

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET   83 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~~   83 (305)
                      +++++...|+++.=+|--..+|.|..+|+|.|+++..++.+.+++...+.|++++|..||+ .+++|+..|.+.+||++.
T Consensus       197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~  276 (910)
T KOG1539|consen  197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK  276 (910)
T ss_pred             EecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence            5788999999999999888999999999999999999999999994459999999999886 567777789999999984


Q ss_pred             CCeeEEEe--e----------------------------------------------CC---------------------
Q 021925           84 GAQLFTFN--F----------------------------------------------DS---------------------   94 (305)
Q Consensus        84 ~~~~~~~~--~----------------------------------------------~~---------------------   94 (305)
                      .+......  +                                              ..                     
T Consensus       277 kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~D  356 (910)
T KOG1539|consen  277 KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQD  356 (910)
T ss_pred             CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccC
Confidence            33222221  1                                              11                     


Q ss_pred             --------------------------------------------------------------------------------
Q 021925           95 --------------------------------------------------------------------------------   94 (305)
Q Consensus        95 --------------------------------------------------------------------------------   94 (305)
                                                                                                      
T Consensus       357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~  436 (910)
T KOG1539|consen  357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR  436 (910)
T ss_pred             cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence                                                                                            


Q ss_pred             -------------CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE---eccCCCeeEEEEcCCC
Q 021925           95 -------------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGPQGRINRAVWGPLN  158 (305)
Q Consensus        95 -------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~  158 (305)
                                   .+.+++.++.|++.+++..     .+.+...++      +.+-....+   ..|+++|+.++...-+
T Consensus       437 ~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S-----~G~Id~fNm------QSGi~r~sf~~~~ah~~~V~gla~D~~n  505 (910)
T KOG1539|consen  437 HVLDPKRFKKDDINATAVCVSFCGNFVFIGYS-----KGTIDRFNM------QSGIHRKSFGDSPAHKGEVTGLAVDGTN  505 (910)
T ss_pred             EEecCccccccCcceEEEEEeccCceEEEecc-----CCeEEEEEc------ccCeeecccccCccccCceeEEEecCCC
Confidence                         1222222222322222221     122222222      122222333   4789999999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeecc--------------------------------------ccCCccceEEEEEc
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDK--------------------------------------ETGHKKTITSLAKA  200 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------------------~~~~~~~v~~~~~~  200 (305)
                      +.+++++.+|.+++||..+...+..+..                                      ..+|...|++++||
T Consensus       506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS  585 (910)
T KOG1539|consen  506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS  585 (910)
T ss_pred             ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence            9999999999999999987664433221                                      34799999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          201 ADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       201 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      |||++|++++.|++|++||+.++.++-.+..+.+..++.|+|+|.+||++..+..-
T Consensus       586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~g  641 (910)
T KOG1539|consen  586 PDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNG  641 (910)
T ss_pred             CCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCce
Confidence            99999999999999999999999999999999999999999999999999877554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.3e-26  Score=184.68  Aligned_cols=219  Identities=20%  Similarity=0.286  Sum_probs=180.2

Q ss_pred             EEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe--eC
Q 021925           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN--FD   93 (305)
Q Consensus        16 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~   93 (305)
                      +.|+. .+.||.|. ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.  +.
T Consensus       183 ldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~  260 (484)
T KOG0305|consen  183 LDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA  260 (484)
T ss_pred             hhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence            56773 44666654 5589999999888666666568899999999999999999999999999999888887777  47


Q ss_pred             CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEE
Q 021925           94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW  173 (305)
Q Consensus        94 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  173 (305)
                      ..|.+++|.  +..+..+..     ...+..+++.....     ....+.+|...|..++|+++++++|+|+.|+.+.||
T Consensus       261 ~rvg~laW~--~~~lssGsr-----~~~I~~~dvR~~~~-----~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iw  328 (484)
T KOG0305|consen  261 SRVGSLAWN--SSVLSSGSR-----DGKILNHDVRISQH-----VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIW  328 (484)
T ss_pred             ceeEEEecc--CceEEEecC-----CCcEEEEEEecchh-----hhhhhhcccceeeeeEECCCCCeeccCCCccceEec
Confidence            788889988  555555544     34444455543221     122378999999999999999999999999999999


Q ss_pred             eCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEEe--CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEe
Q 021925          174 DTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGS--LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  250 (305)
                      |.....+...+.   .|...|.+++|+| ....||+|+  .|+.|++||..+++.+..+...+.|.++.|++..+-|+++
T Consensus       329 d~~~~~p~~~~~---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~st  405 (484)
T KOG0305|consen  329 DGLSPEPKFTFT---EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLST  405 (484)
T ss_pred             cCCCccccEEEe---ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEe
Confidence            998878887777   7999999999999 556788865  5999999999999999999999999999999999877776


Q ss_pred             e
Q 021925          251 E  251 (305)
Q Consensus       251 ~  251 (305)
                      .
T Consensus       406 h  406 (484)
T KOG0305|consen  406 H  406 (484)
T ss_pred             c
Confidence            3

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.3e-25  Score=156.22  Aligned_cols=241  Identities=13%  Similarity=0.120  Sum_probs=184.2

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC--e---eeEEecCCCcceEEEEEcC----CCcEEEEEeC-CCc
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--E---RLGTYRGHNGAVWCCDVSR----DSMTLITGSA-DQT   75 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~--~---~~~~~~~~~~~v~~i~~~~----~~~~l~s~~~-dg~   75 (305)
                      -+.|++.|.|.+|+|+|++||+|+.|++|++--....  +   .-..+.-|.+.|..++|..    .+..|++++. |..
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            3568999999999999999999999999999755432  1   2235677999999999965    3457777665 788


Q ss_pred             EEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-ccCCCeeEEE
Q 021925           76 AKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQGRINRAV  153 (305)
Q Consensus        76 v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~  153 (305)
                      |.+-|..+++..+.+. +.+.+..+ ++-++-+++.++.     +..++.|++..............-. -..+.|.+++
T Consensus       165 iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsq-----dktirfwdlrv~~~v~~l~~~~~~~glessavaav~  238 (350)
T KOG0641|consen  165 IYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQ-----DKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVA  238 (350)
T ss_pred             EEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCC-----CceEEEEeeeccceeeeccCcccCCCcccceeEEEE
Confidence            8888999998888777 45555443 4556667777665     6677788876543211110000000 1235789999


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----eEEE-E
Q 021925          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIK-T  228 (305)
Q Consensus       154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~-~  228 (305)
                      ..|.|++|++|-.|....+||++.++.++.+.   .|...|.++.|+|...++++++.|..|++-|+..-    -++. .
T Consensus       239 vdpsgrll~sg~~dssc~lydirg~r~iq~f~---phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv  315 (350)
T KOG0641|consen  239 VDPSGRLLASGHADSSCMLYDIRGGRMIQRFH---PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV  315 (350)
T ss_pred             ECCCcceeeeccCCCceEEEEeeCCceeeeeC---CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence            99999999999999999999999999999998   79999999999999999999999999999998732    1111 2


Q ss_pred             EeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          229 YVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       229 ~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      -+|...+-.+.|+|..-.+++.+.|..
T Consensus       316 ~ehkdk~i~~rwh~~d~sfisssadkt  342 (350)
T KOG0641|consen  316 AEHKDKAIQCRWHPQDFSFISSSADKT  342 (350)
T ss_pred             EeccCceEEEEecCccceeeeccCcce
Confidence            237788888999999888888888876

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.8e-25  Score=162.89  Aligned_cols=257  Identities=14%  Similarity=0.186  Sum_probs=186.1

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEE
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLW   79 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vw   79 (305)
                      ..+|.+-|+++.|.+-|+.+|+|+.|++|+|||.++.    .+....+.|.+.|..+.|.+  -|+.+|+++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            3589999999999999999999999999999996533    35567788999999999966  57899999999999999


Q ss_pred             ecCCC--C-------eeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE-------
Q 021925           80 NVETG--A-------QLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-------  140 (305)
Q Consensus        80 d~~~~--~-------~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  140 (305)
                      .=...  +       ...++. ....|.++.|.|.  |..+++++.     ++.+++++.........-....       
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a-----DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA-----DGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc-----CcEEEEEecCCccccccchhhhhhhhccC
Confidence            74211  1       112222 6678999999995  444444443     3334444333222211111111       


Q ss_pred             EEeccCCCeeEEEEcCCC---CEEEEeeCC-----CcEEEEeCCCCc-EeeeeccccCCccceEEEEEcCC----CCEEE
Q 021925          141 ILKGPQGRINRAVWGPLN---RTIISAGED-----AIVRIWDTETGK-LLKESDKETGHKKTITSLAKAAD----GSHFL  207 (305)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~---~~l~~~~~d-----g~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~----~~~l~  207 (305)
                      ....+..+..|+.|+|..   .+||.|+.+     +.++||...... .-.......+|..+|+.++|.|+    -..||
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence            223466778899999854   678888876     578898775432 33334444489999999999995    34699


Q ss_pred             EEeCCCeEEEEEcCCc--------------------eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          208 TGSLDKSAKLWDARTL--------------------ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       208 ~~~~dg~i~iwd~~~~--------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                      +++.|| |+||.++..                    +.+..+. |.++|+.+.|+-.|..|++.++||.     +++|..
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~-----VRLWka  317 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC-----VRLWKA  317 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce-----eeehhh
Confidence            999999 999998731                    2333444 8889999999999999999999998     888887


Q ss_pred             hhhhhhh
Q 021925          267 FLDILFY  273 (305)
Q Consensus       267 ~~~~~~~  273 (305)
                      .+.....
T Consensus       318 ny~n~~k  324 (361)
T KOG2445|consen  318 NYNNLWK  324 (361)
T ss_pred             hhhhhhe
Confidence            7766553

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.9e-25  Score=163.49  Aligned_cols=249  Identities=14%  Similarity=0.181  Sum_probs=195.0

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~   87 (305)
                      ...+.|+++.|+|.++.|++++.||++++||....+....++ |..++.+++|.+ ...+++|+.||.|+.+|+.+++..
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED   88 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence            347789999999999999999999999999999887766666 999999999997 457899999999999999999988


Q ss_pred             EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (305)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  167 (305)
                      ..-.+..+++++.+.+....+++++     ++..+..|+......      ...+ .....|.++..+  ++.|+.|+.|
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgs-----WD~~ik~wD~R~~~~------~~~~-d~~kkVy~~~v~--g~~LvVg~~~  154 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGS-----WDKTIKFWDPRNKVV------VGTF-DQGKKVYCMDVS--GNRLVVGTSD  154 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcc-----cCccEEEEecccccc------cccc-ccCceEEEEecc--CCEEEEeecC
Confidence            8888999999999998666666553     466777787763211      1111 122367776655  7789999999


Q ss_pred             CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----eEEEEEe-e---------CC
Q 021925          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYV-T---------ER  233 (305)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~-~---------~~  233 (305)
                      ..+.+||+++.....+.. .......++++++-|++.-.++++-||+|.+=.++..    +....|+ |         --
T Consensus       155 r~v~iyDLRn~~~~~q~r-eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  155 RKVLIYDLRNLDEPFQRR-ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             ceEEEEEcccccchhhhc-cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            999999999876554332 1245678999999998888999999999988776654    2223333 2         12


Q ss_pred             CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhcccc
Q 021925          234 PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCS  278 (305)
Q Consensus       234 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (305)
                      ||++++|+|-...+++|++||.     +..|+.....++.+++-.
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~-----V~~Wd~~~rKrl~q~~~~  273 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGI-----VNIWDLFNRKRLKQLAKY  273 (323)
T ss_pred             EeceeEeccccceEEecCCCce-----EEEccCcchhhhhhccCC
Confidence            7999999999999999999998     777877777766655544

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.4e-25  Score=173.54  Aligned_cols=206  Identities=19%  Similarity=0.254  Sum_probs=174.0

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~   89 (305)
                      .++|.+++-+|+|.+|+.|+..|.+++|.+.+|..+..+.+|-..|+++.|+.||.+|+|||.||.|.+|++..-  +  
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l--v--  156 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL--V--  156 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee--c--
Confidence            467999999999999999989999999999999999999999999999999999999999999999999987421  0  


Q ss_pred             EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC--CEEEEeeCC
Q 021925           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--RTIISAGED  167 (305)
Q Consensus        90 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d  167 (305)
                                  +++                           .....++...+..|.-+|+++...+.|  .++++++.|
T Consensus       157 ------------~a~---------------------------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D  197 (476)
T KOG0646|consen  157 ------------SAD---------------------------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED  197 (476)
T ss_pred             ------------ccc---------------------------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCC
Confidence                        000                           011346788889999999999988764  689999999


Q ss_pred             CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce----------------EEEEEe-
Q 021925          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE----------------LIKTYV-  230 (305)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------------~~~~~~-  230 (305)
                      .++++||+..+..+.++.    ....+.+++.+|-++.+++|+.+|.|.+.++....                .+..+. 
T Consensus       198 ~t~k~wdlS~g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G  273 (476)
T KOG0646|consen  198 RTIKLWDLSLGVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG  273 (476)
T ss_pred             ceEEEEEeccceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence            999999999999998885    67889999999999999999999999998875322                223333 


Q ss_pred             eCC--CeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925          231 TER--PVNAVTMSPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       231 ~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                      |..  +|+|++.+-||..|++|+.|+...+|.++
T Consensus       274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             ccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            444  89999999999999999999985544444

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8e-26  Score=167.51  Aligned_cols=242  Identities=19%  Similarity=0.299  Sum_probs=199.0

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEc------CC----------------------------------Cee
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFA------DN----------------------------------GER   44 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~------~~----------------------------------~~~   44 (305)
                      ...||.+.|++++|++.+.++++++.|++..||..      ..                                  ..+
T Consensus       185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP  264 (481)
T KOG0300|consen  185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP  264 (481)
T ss_pred             eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence            47899999999999999999999999999999951      10                                  013


Q ss_pred             eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEE
Q 021925           45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH  123 (305)
Q Consensus        45 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (305)
                      +..+.+|.+.|.+..|...|+.+++++.|.+-.+||+++++.+..+. +......++-+|..++++.++.     +....
T Consensus       265 l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-----DtTFR  339 (481)
T KOG0300|consen  265 LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-----DTTFR  339 (481)
T ss_pred             eeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc-----CceeE
Confidence            45678999999999999999999999999999999999999999887 8888889999999999988876     56677


Q ss_pred             EEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCC
Q 021925          124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAAD  202 (305)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~  202 (305)
                      +|+...     ....+..+++|...|+++.|.-+. .+++|+.|.+|++||+++. .++.++.    ...+++.++.+..
T Consensus       340 LWDFRe-----aI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g  409 (481)
T KOG0300|consen  340 LWDFRE-----AIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKG  409 (481)
T ss_pred             eccchh-----hcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee----cCCccceeEeecC
Confidence            777763     346788899999999999998765 4899999999999999874 4667775    6788999999998


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceEEEEE---e--eCCCeeEEEecCCCC--cEEEeeCCcEEEEEEe
Q 021925          203 GSHFLTGSLDKSAKLWDARTLELIKTY---V--TERPVNAVTMSPLLD--HVCIGEPQTIKFMLLV  261 (305)
Q Consensus       203 ~~~l~~~~~dg~i~iwd~~~~~~~~~~---~--~~~~v~~~~~~~~~~--~l~~~~~~~~~~~~~~  261 (305)
                      +..++.--.+..|++||+...+..+.-   +  |..-|.|++|..+..  -|++++-|...+-+.+
T Consensus       410 ~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  410 HPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI  475 (481)
T ss_pred             CceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence            889999988999999999854432221   1  566789999986554  3778887776444433

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.4e-24  Score=175.29  Aligned_cols=244  Identities=16%  Similarity=0.218  Sum_probs=194.5

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-eeEEecCC-CcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      +.--..+|.+|+++.+.+.||.+-.||.|.||++..+= +...+.++ +..|.+++|++ +..|.+.+.+|.|.-||+.+
T Consensus        21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence            34456789999999999999999999999999998753 33455554 45799999995 55788999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      ++....+. ..+.+.+++.+|.+..++++.++.....-.+....+         +....+...++.+.+++|+|++..++
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I---------~~~r~l~rq~sRvLslsw~~~~~~i~  170 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI---------TYKRSLMRQKSRVLSLSWNPTGTKIA  170 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE---------EEEeecccccceEEEEEecCCccEEE
Confidence            99998888 788999999999999999987654333322221111         22233444568999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeec-----cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925          163 SAGEDAIVRIWDTETGKLLKESD-----KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN  236 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~  236 (305)
                      +|+.||.|++||..++..+....     .......-|+++.|-.++ .|++|.+.|+|.+||...+.+++.+. |...|.
T Consensus       171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl  249 (691)
T KOG2048|consen  171 GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVL  249 (691)
T ss_pred             ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhccee
Confidence            99999999999999988776221     111234567888887665 69999999999999999999999988 899999


Q ss_pred             EEEecCCCCcEEEeeCCcEEEEEE
Q 021925          237 AVTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                      +++.++++..+++++-|+..+.+.
T Consensus       250 ~Lav~~~~d~vfsaGvd~~ii~~~  273 (691)
T KOG2048|consen  250 ALAVADNEDRVFSAGVDPKIIQYS  273 (691)
T ss_pred             EEEEcCCCCeEEEccCCCceEEEE
Confidence            999999999999999888764443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=9.9e-25  Score=160.28  Aligned_cols=243  Identities=18%  Similarity=0.236  Sum_probs=183.3

Q ss_pred             ccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCC-Ceee-EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            8 GHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN-GERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         8 ~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      ..++.|.+++||| ....+++++.||+||+|+++. |... +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            4577899999999 555677899999999999987 3332 344569999999999999999999999999999999999


Q ss_pred             CeeEEEeeCCCceEEEEecCCc--eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           85 AQLFTFNFDSPARSVDFAVGDK--LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      +....-.|..++..+.|.+...  .++++     .++..++.|+.+..      .++..+.-. ..+.++..  ...+++
T Consensus       105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG-----SWDKTlKfWD~R~~------~pv~t~~LP-eRvYa~Dv--~~pm~v  170 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTG-----SWDKTLKFWDTRSS------NPVATLQLP-ERVYAADV--LYPMAV  170 (347)
T ss_pred             CeeeeeecccceeEEEEecCCCcceeEec-----ccccceeecccCCC------Ceeeeeecc-ceeeehhc--cCceeE
Confidence            8888778999999999999877  44444     35777888887632      333333322 23444332  246788


Q ss_pred             EeeCCCcEEEEeCCCCcEee-eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE--EEEe-eC------
Q 021925          163 SAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYV-TE------  232 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~------  232 (305)
                      .+..+..|.+|+++++.... ....  ...-.+++++..+|....+.|+.+|++.+..+..+.+.  .+|+ |.      
T Consensus       171 Vata~r~i~vynL~n~~te~k~~~S--pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~  248 (347)
T KOG0647|consen  171 VATAERHIAVYNLENPPTEFKRIES--PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN  248 (347)
T ss_pred             EEecCCcEEEEEcCCCcchhhhhcC--cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCC
Confidence            89999999999997654332 2221  34567899999998888899999999999998876332  3333 32      


Q ss_pred             ---CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925          233 ---RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       233 ---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
                         -.|++++|+|....|+++++||.     ...|+.....+
T Consensus       249 ~~VYaVNsi~FhP~hgtlvTaGsDGt-----f~FWDkdar~k  285 (347)
T KOG0647|consen  249 DDVYAVNSIAFHPVHGTLVTAGSDGT-----FSFWDKDARTK  285 (347)
T ss_pred             CceEEecceEeecccceEEEecCCce-----EEEecchhhhh
Confidence               14789999999999999999998     44555444333

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=5.2e-27  Score=174.32  Aligned_cols=199  Identities=26%  Similarity=0.436  Sum_probs=172.6

Q ss_pred             CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe---------eCCCceEEEEecCCceEEEeCCcceeeee
Q 021925           50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN---------FDSPARSVDFAVGDKLAVITTDPFMELNS  120 (305)
Q Consensus        50 ~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  120 (305)
                      +.++.+.|..|+|||++|++|+.||.|-+||..+|+....++         ++.+|.|+.|+.+...++.++.     ++
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq-----DG  285 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ-----DG  285 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc-----CC
Confidence            356678999999999999999999999999999987655443         6788999999999999999875     78


Q ss_pred             eEEEEEeecccCCCCCceEEEEe-ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE
Q 021925          121 AIHVKRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (305)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  199 (305)
                      .+++|.+..      +.+++.+. .|...|+++.|+.|+..+++++.|.++++.-+++|++++.+.   +|.+.|+...|
T Consensus       286 kIKvWri~t------G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr---GHsSyvn~a~f  356 (508)
T KOG0275|consen  286 KIKVWRIET------GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR---GHSSYVNEATF  356 (508)
T ss_pred             cEEEEEEec------chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc---CccccccceEE
Confidence            889998854      45666665 899999999999999999999999999999999999999988   99999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEEEecCCC-CcEEEeeCCcEEEEEEee
Q 021925          200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPLL-DHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       200 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~  262 (305)
                      .++|+.+++++.||+|++|+.++.+++.+++   .+.+|+++-.-|.+ ..+++|...+.....++.
T Consensus       357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q  423 (508)
T KOG0275|consen  357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ  423 (508)
T ss_pred             cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence            9999999999999999999999999999998   45678888887765 467777777665444443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=3.6e-26  Score=178.81  Aligned_cols=249  Identities=13%  Similarity=0.196  Sum_probs=207.7

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC---eeeEEecC--CCcceEEEEEcCCCcEEEEEeCCCcEEEE
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~---~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~dg~v~vw   79 (305)
                      ..-.|.+-|.++..|...++++||+ .|.|+|||+...   .++..+..  -...|.++...|||+.|++|+.-.+|.||
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW  492 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW  492 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence            3457999999999999999999987 678999998643   23444432  35679999999999999999999999999


Q ss_pred             ecCCCCeeEEEee---CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           80 NVETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        80 d~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      |+...........   ...+..++.+||.++.+.+..     ++.+.+|++..      ...++.+++|.+.+.|+..++
T Consensus       493 DLAapTprikaeltssapaCyALa~spDakvcFsccs-----dGnI~vwDLhn------q~~VrqfqGhtDGascIdis~  561 (705)
T KOG0639|consen  493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS-----DGNIAVWDLHN------QTLVRQFQGHTDGASCIDISK  561 (705)
T ss_pred             eccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc-----CCcEEEEEccc------ceeeecccCCCCCceeEEecC
Confidence            9987765444442   345678899999999888765     67788888854      357888999999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCee
Q 021925          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN  236 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~  236 (305)
                      +|..|.+|+-|.+|+.||+++++.+....    ....|.++..+|++.+|+.|-.++.+.+......+......|++.|.
T Consensus       562 dGtklWTGGlDntvRcWDlregrqlqqhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVL  637 (705)
T KOG0639|consen  562 DGTKLWTGGLDNTVRCWDLREGRQLQQHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVL  637 (705)
T ss_pred             CCceeecCCCccceeehhhhhhhhhhhhh----hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEE
Confidence            99999999999999999999998877664    67889999999999999999999999999877655555555999999


Q ss_pred             EEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhh
Q 021925          237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYN  274 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (305)
                      ++.|.+.|+++++.+.|+.     +..|.......+++
T Consensus       638 SlKFa~cGkwfvStGkDnl-----LnawrtPyGasiFq  670 (705)
T KOG0639|consen  638 SLKFAYCGKWFVSTGKDNL-----LNAWRTPYGASIFQ  670 (705)
T ss_pred             EEEecccCceeeecCchhh-----hhhccCccccceee
Confidence            9999999999999999987     77887776666643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=3.3e-26  Score=168.85  Aligned_cols=214  Identities=17%  Similarity=0.273  Sum_probs=176.6

Q ss_pred             eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC------------CC------eeEEE-eeCCCceEEEEecCC
Q 021925           45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET------------GA------QLFTF-NFDSPARSVDFAVGD  105 (305)
Q Consensus        45 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~------------~~------~~~~~-~~~~~v~~~~~~~~~  105 (305)
                      ...+..|++++.+.+|+|||.++++|+.|..|+|.|++.            +.      .+.++ .+-.+|.++.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            345667999999999999999999999999999999871            11      12222 378899999999999


Q ss_pred             ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec
Q 021925          106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD  185 (305)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  185 (305)
                      .+++.++.     ++.+++.+..+...    +...+.-....++.++.|+|.|.+|+.|..-..+++||+.+-++...-.
T Consensus       185 ~ILiS~sr-----D~tvKlFDfsK~sa----KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  185 TILISGSR-----DNTVKLFDFSKTSA----KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             heEEeccC-----CCeEEEEecccHHH----HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence            99999876     56666666654322    1111222334679999999999999999999999999999988877766


Q ss_pred             cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925          186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                      ...+|.+.|+++.+++.+++.++++.||.|++||--+++++.++.   .+..|.+..|..+|+++++.+.|..     ++
T Consensus       256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-----vk  330 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-----VK  330 (430)
T ss_pred             cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-----ee
Confidence            667899999999999999999999999999999999999999887   4567999999999999999999987     78


Q ss_pred             hhhhhhhhhh
Q 021925          263 LFVLFLDILF  272 (305)
Q Consensus       263 ~~~~~~~~~~  272 (305)
                      +|.+...+.+
T Consensus       331 LWEi~t~R~l  340 (430)
T KOG0640|consen  331 LWEISTGRML  340 (430)
T ss_pred             eeeecCCceE
Confidence            8877665554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=1.6e-25  Score=169.01  Aligned_cols=208  Identities=19%  Similarity=0.309  Sum_probs=163.3

Q ss_pred             CCce-EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCeee---EEecCCCcceEEEEEcC-CCcEEEEEeCCC
Q 021925            1 MRPI-LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERL---GTYRGHNGAVWCCDVSR-DSMTLITGSADQ   74 (305)
Q Consensus         1 ~~~~-~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~---~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg   74 (305)
                      ++|+ ++.+|.+.=++++|||- ...|++|.--+.|++|...++.-.   ..+.+|+..|-.++|+| ....|+|||.||
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg  280 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG  280 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence            4676 48899999999999992 235888888889999998887533   34567999999999999 446899999999


Q ss_pred             cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (305)
Q Consensus        75 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (305)
                      +|+|||++.+...                                                  .....+.|.+.|+-+.|
T Consensus       281 sIrIWDiRs~~~~--------------------------------------------------~~~~~kAh~sDVNVISW  310 (440)
T KOG0302|consen  281 SIRIWDIRSGPKK--------------------------------------------------AAVSTKAHNSDVNVISW  310 (440)
T ss_pred             eEEEEEecCCCcc--------------------------------------------------ceeEeeccCCceeeEEc
Confidence            9999999977432                                                  12223678899999999


Q ss_pred             cCCCCEEEEeeCCCcEEEEeCCC---CcEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCc-------
Q 021925          155 GPLNRTIISAGEDAIVRIWDTET---GKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL-------  223 (305)
Q Consensus       155 ~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~-------  223 (305)
                      +.+..+||+|+.||+++|||+++   ++++..+.   -|..+|+++.|+|. ...|++++.|.+|.+||+..-       
T Consensus       311 nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk---~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~  387 (440)
T KOG0302|consen  311 NRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK---YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID  387 (440)
T ss_pred             cCCcceeeecCCCceEEEEEhhhccCCCcceeEE---eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence            99888999999999999999986   45666666   79999999999994 457889999999999998531       


Q ss_pred             ------------eEEEEEeeCCCeeEEEecCCCC-cEEEeeCCcEEEEEEe
Q 021925          224 ------------ELIKTYVTERPVNAVTMSPLLD-HVCIGEPQTIKFMLLV  261 (305)
Q Consensus       224 ------------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~  261 (305)
                                  +++.....+..+..+.|+++-+ ++++.+.+|..++.++
T Consensus       388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfktI  438 (440)
T KOG0302|consen  388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKTI  438 (440)
T ss_pred             cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEec
Confidence                        1222222456788999999865 4566677777666554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=5.4e-25  Score=178.09  Aligned_cols=233  Identities=20%  Similarity=0.317  Sum_probs=192.5

Q ss_pred             EecccccceEE-EEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTY-LKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~-~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+.+|.+-|.. +++-+ ++-.+++|+.|+.+.+|...+..++.++.+|+..|.++....++. ++|||.|.++++|...
T Consensus        52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~  130 (745)
T KOG0301|consen   52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG  130 (745)
T ss_pred             ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch
Confidence            46778888777 88876 445699999999999999999999999999999999999887776 9999999999999764


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                        ++...+. |+..|..++.-|.+.++..+.+.      .+++|.-        ++.+..+.+|.+.|..+++-|++. +
T Consensus       131 --~l~~~l~gH~asVWAv~~l~e~~~vTgsaDK------tIklWk~--------~~~l~tf~gHtD~VRgL~vl~~~~-f  193 (745)
T KOG0301|consen  131 --ELVYSLQGHTASVWAVASLPENTYVTGSADK------TIKLWKG--------GTLLKTFSGHTDCVRGLAVLDDSH-F  193 (745)
T ss_pred             --hhhcccCCcchheeeeeecCCCcEEeccCcc------eeeeccC--------CchhhhhccchhheeeeEEecCCC-e
Confidence              4444455 89999999999999666666543      3444432        467788999999999999998754 8


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC-CeeEEEe
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTM  240 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~  240 (305)
                      ++++.||.|++|++ ++..+..+.   +|..-+.++...+++..++++++|++++||+..  ++.+.+.++. .|+++.+
T Consensus       194 lScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~  267 (745)
T KOG0301|consen  194 LSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV  267 (745)
T ss_pred             EeecCCceEEEEec-cCceeeeee---ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence            89999999999999 678888777   899999999988888899999999999999976  8888888665 8999999


Q ss_pred             cCCCCcEEEeeCCcEEEEEEee
Q 021925          241 SPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       241 ~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                      -++|+ |++|++||...+++..
T Consensus       268 L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  268 LLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eeCCC-EEEeccCceEEEEEec
Confidence            99986 5566777765554444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=1.4e-23  Score=167.41  Aligned_cols=245  Identities=16%  Similarity=0.122  Sum_probs=176.1

Q ss_pred             ecccccceEEEEEcCCCCEE-EEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEE-eCCCcEEEEecCC
Q 021925            6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVET   83 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~v~vwd~~~   83 (305)
                      +.+|. .+.+++|+|+|+.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.|+.+++||+++
T Consensus        27 ~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~  104 (300)
T TIGR03866        27 FPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET  104 (300)
T ss_pred             EECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            34443 46789999999876 5667889999999999888777765544 5778999999877554 5689999999999


Q ss_pred             CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      .+.+..+.....+..++++|++..++++.....    .+..++..      ..+...... ....+..++|+|+++++++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~----~~~~~d~~------~~~~~~~~~-~~~~~~~~~~s~dg~~l~~  173 (300)
T TIGR03866       105 RKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN----MAHFIDTK------TYEIVDNVL-VDQRPRFAEFTADGKELWV  173 (300)
T ss_pred             CeEEeEeeCCCCcceEEECCCCCEEEEEecCCC----eEEEEeCC------CCeEEEEEE-cCCCccEEEECCCCCEEEE
Confidence            888877776667889999999999888764311    11122221      112222222 2334577999999998865


Q ss_pred             e-eCCCcEEEEeCCCCcEeeeecccc--CC--ccceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCceEEEEEeeCCCeeE
Q 021925          164 A-GEDAIVRIWDTETGKLLKESDKET--GH--KKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTYVTERPVNA  237 (305)
Q Consensus       164 ~-~~dg~i~iwd~~~~~~~~~~~~~~--~~--~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~v~~  237 (305)
                      + ..++.|++||+++++.+..+....  .+  ......++|+|+++++++ .+.++.+.+||.++++.+..+.+...+.+
T Consensus       174 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~  253 (300)
T TIGR03866       174 SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQ  253 (300)
T ss_pred             EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcce
Confidence            4 468999999999988776653110  01  112356889999998554 45577899999999988877666778999


Q ss_pred             EEecCCCCcEEEeeC-CcEEEEEEeehhhhhh
Q 021925          238 VTMSPLLDHVCIGEP-QTIKFMLLVYLFVLFL  268 (305)
Q Consensus       238 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~  268 (305)
                      ++|+|+|++|++++. ++.     +.+|+...
T Consensus       254 ~~~~~~g~~l~~~~~~~~~-----i~v~d~~~  280 (300)
T TIGR03866       254 LAFTPDEKYLLTTNGVSND-----VSVIDVAA  280 (300)
T ss_pred             EEECCCCCEEEEEcCCCCe-----EEEEECCC
Confidence            999999999988754 454     55565544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=2.1e-25  Score=168.43  Aligned_cols=212  Identities=19%  Similarity=0.318  Sum_probs=166.1

Q ss_pred             ecccccceEEEEEcCCC--CEEEEeeCCCceEEEEcCC----------------CeeeEEecCCCcceEEEEEcC-CCcE
Q 021925            6 MKGHERPLTYLKYNKDG--DLLFSCAKDHTPTVWFADN----------------GERLGTYRGHNGAVWCCDVSR-DSMT   66 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~--~~l~s~~~dg~v~iw~~~~----------------~~~~~~~~~~~~~v~~i~~~~-~~~~   66 (305)
                      .-+|.+.++-+.-++-+  .+.|+-+..|.|+||++..                .+++.++.+|.+.=..++||| ....
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            34688888888887754  4566667889999998752                356778889999999999999 3346


Q ss_pred             EEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC
Q 021925           67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (305)
Q Consensus        67 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (305)
                      |++|..-+.|++|...++.-..                                       .          ...+.+|.
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~v---------------------------------------d----------~~Pf~gH~  257 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKV---------------------------------------D----------QRPFTGHT  257 (440)
T ss_pred             cccCccccceEeeeeccCceee---------------------------------------c----------Cccccccc
Confidence            8888888899999987653211                                       0          11245699


Q ss_pred             CCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC---
Q 021925          147 GRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART---  222 (305)
Q Consensus       147 ~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---  222 (305)
                      ..|..++|||.. ..|++|+-||.|+|||+|.+.....+.. ..|.+.|+.+.|+.+..+||+|+.||+++|||++.   
T Consensus       258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~  336 (440)
T KOG0302|consen  258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS  336 (440)
T ss_pred             cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC
Confidence            999999999976 5788999999999999998843333322 37999999999999888999999999999999985   


Q ss_pred             ceEEEEEe-eCCCeeEEEecCCCCc-EEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          223 LELIKTYV-TERPVNAVTMSPLLDH-VCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       223 ~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      ++++.+|. |..+|+++.|+|.... +++++.|+.     +.+|++..+.-.
T Consensus       337 ~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q-----itiWDlsvE~D~  383 (440)
T KOG0302|consen  337 GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ-----ITIWDLSVEADE  383 (440)
T ss_pred             CCcceeEEeccCCeeEEEeccccCceEEeccCCCc-----EEEEEeeccCCh
Confidence            57888888 9999999999997665 455555655     788888776654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=2.7e-25  Score=160.13  Aligned_cols=229  Identities=18%  Similarity=0.245  Sum_probs=180.5

Q ss_pred             EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe---eCCCceEEEEecCC-ceEEEeCCcceeeeee
Q 021925           46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN---FDSPARSVDFAVGD-KLAVITTDPFMELNSA  121 (305)
Q Consensus        46 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~  121 (305)
                      +.+++|...+.+++|+.+|..|++|+.|+++.+|+++..+......   +.+.+..++|.|.. ..+++++.     ...
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~-----dk~   88 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG-----DKT   88 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC-----Cce
Confidence            4566899999999999999999999999999999998776555544   66678888998854 44455443     456


Q ss_pred             EEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec----------------
Q 021925          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD----------------  185 (305)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------  185 (305)
                      +.+|++..      +++........+.+ -+.|+|+|++++.++.|..|.+.|.++.+.....+                
T Consensus        89 ir~wd~r~------~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~  161 (313)
T KOG1407|consen   89 IRIWDIRS------GKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDL  161 (313)
T ss_pred             EEEEEecc------CcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCE
Confidence            67777753      35555555544444 37899999999999999999999888655433211                


Q ss_pred             ----------------------cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925          186 ----------------------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (305)
Q Consensus       186 ----------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~  242 (305)
                                            ....|.....|+.|+|+|++||+|+.|..+.+||+...-+++.+. ++-||..++|+.
T Consensus       162 Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~  241 (313)
T KOG1407|consen  162 FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH  241 (313)
T ss_pred             EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc
Confidence                                  123688888899999999999999999999999999999999887 889999999999


Q ss_pred             CCCcEEEeeCCcEEEEEEee----hhhhhhhhhhhhcccccccccccc
Q 021925          243 LLDHVCIGEPQTIKFMLLVY----LFVLFLDILFYNLYCSASRKYIYD  286 (305)
Q Consensus       243 ~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  286 (305)
                      +|++||+|+.|..+....+.    +|.+..+...+.....+.+..+.|
T Consensus       242 dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAy  289 (313)
T KOG1407|consen  242 DGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAY  289 (313)
T ss_pred             CcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeE
Confidence            99999999999886655554    577777777777777777777776

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=2.7e-25  Score=171.47  Aligned_cols=209  Identities=16%  Similarity=0.279  Sum_probs=168.9

Q ss_pred             eEecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCe-------eeEEecCCCcceEEEEEcC-CCcEEEEEeCCC
Q 021925            4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQ   74 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~-------~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg   74 (305)
                      ++|.||.+.=++++|++.. -.|++++.|+.|.+||+....       +...+.+|.+.|..++|++ +..++++++.|+
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~  250 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG  250 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence            4689999988999999944 488999999999999987432       4567789999999999999 567899999999


Q ss_pred             cEEEEecCC--CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925           75 TAKLWNVET--GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (305)
Q Consensus        75 ~v~vwd~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (305)
                      .+.|||+++  .++..... +...+.|++|+|-+..+++.+.    .+..+.+|+++...     ++...+.+|...|.+
T Consensus       251 ~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S----~D~tV~LwDlRnL~-----~~lh~~e~H~dev~~  321 (422)
T KOG0264|consen  251 KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS----ADKTVALWDLRNLN-----KPLHTFEGHEDEVFQ  321 (422)
T ss_pred             eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc----CCCcEEEeechhcc-----cCceeccCCCcceEE
Confidence            999999994  44444444 8999999999996655544432    36778888887543     488899999999999


Q ss_pred             EEEcCCC-CEEEEeeCCCcEEEEeCCCCcEe-----------eeeccccCCccceEEEEEcCCCCE-EEEEeCCCeEEEE
Q 021925          152 AVWGPLN-RTIISAGEDAIVRIWDTETGKLL-----------KESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLW  218 (305)
Q Consensus       152 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iw  218 (305)
                      +.|+|.. ..||+++.|+.+.+||+..-...           ..+....+|...|..+.|+|+..+ +++.+.|+.+.||
T Consensus       322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW  401 (422)
T KOG0264|consen  322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIW  401 (422)
T ss_pred             EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEe
Confidence            9999986 57888899999999999752211           122334589999999999998776 6788999999999


Q ss_pred             EcC
Q 021925          219 DAR  221 (305)
Q Consensus       219 d~~  221 (305)
                      +..
T Consensus       402 ~~s  404 (422)
T KOG0264|consen  402 QMA  404 (422)
T ss_pred             ecc
Confidence            976

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.7e-24  Score=159.46  Aligned_cols=233  Identities=15%  Similarity=0.171  Sum_probs=177.7

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~   87 (305)
                      .|..++.+++|.++ ..+++|+.||.|+.+|+.++... .+..|..+|.||..++....+++||.|++|++||.+.....
T Consensus        52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~  129 (323)
T KOG1036|consen   52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV  129 (323)
T ss_pred             ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence            58999999999974 57899999999999999887754 45569999999999997789999999999999999986666


Q ss_pred             EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (305)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  167 (305)
                      ..+.....|.++...  +..+++++.     ...+.+++++......    ...-..-+-.+.+++.-|++.-.+.++.|
T Consensus       130 ~~~d~~kkVy~~~v~--g~~LvVg~~-----~r~v~iyDLRn~~~~~----q~reS~lkyqtR~v~~~pn~eGy~~sSie  198 (323)
T KOG1036|consen  130 GTFDQGKKVYCMDVS--GNRLVVGTS-----DRKVLIYDLRNLDEPF----QRRESSLKYQTRCVALVPNGEGYVVSSIE  198 (323)
T ss_pred             cccccCceEEEEecc--CCEEEEeec-----CceEEEEEcccccchh----hhccccceeEEEEEEEecCCCceEEEeec
Confidence            666666677776554  444444333     3455566665433221    11112234567899999988889999999


Q ss_pred             CcEEEEeCCCCc----Eeeeec------cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925          168 AIVRIWDTETGK----LLKESD------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN  236 (305)
Q Consensus       168 g~i~iwd~~~~~----~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~  236 (305)
                      |.|.+=.+...+    ....+.      .....-.+|++++|+|-...|+||+.||.|.+||+.+.+.+.++. .+..|.
T Consensus       199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~  278 (323)
T KOG1036|consen  199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSIS  278 (323)
T ss_pred             ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceE
Confidence            999886665441    111122      111123589999999998899999999999999999999988887 556799


Q ss_pred             EEEecCCCCcEEEeeCC
Q 021925          237 AVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~  253 (305)
                      +++|+.+|..||+|++-
T Consensus       279 slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  279 SLSFSMDGSLLAIASSY  295 (323)
T ss_pred             EEEeccCCCeEEEEech
Confidence            99999999999999743

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.9e-23  Score=154.55  Aligned_cols=213  Identities=21%  Similarity=0.233  Sum_probs=168.9

Q ss_pred             CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeee
Q 021925           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNS  120 (305)
Q Consensus        42 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  120 (305)
                      .++.+.+....+.|.++.|+++|.++++++.|..+++||..+++.+.++. .+..+..+.|......+..++.   ..+.
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt---k~d~   80 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST---KEDD   80 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC---CCCC
Confidence            34556666678899999999999999999999999999999999999998 4557778888877776666654   2344


Q ss_pred             eEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeecc--------------
Q 021925          121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK--------------  186 (305)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------  186 (305)
                      .++...+.      ..+.++.+.||...|++++.+|-+..+++++.|++|++||++..++...+..              
T Consensus        81 tIryLsl~------dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLi  154 (311)
T KOG1446|consen   81 TIRYLSLH------DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLI  154 (311)
T ss_pred             ceEEEEee------cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcE
Confidence            55555543      4578999999999999999999999999999999999999996554332211              


Q ss_pred             ----------------------------ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC---C-C
Q 021925          187 ----------------------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---R-P  234 (305)
Q Consensus       187 ----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~-~  234 (305)
                                                  ..+.....+.+.|+|||+.|+.++..+.+++.|.-+|....++...   . -
T Consensus       155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~  234 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL  234 (311)
T ss_pred             EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence                                        1123456788999999999999999999999999999988888721   1 1


Q ss_pred             eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          235 VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       235 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      ..+.+|+||++++++|++|+.     +.+|+...
T Consensus       235 ~~~a~ftPds~Fvl~gs~dg~-----i~vw~~~t  263 (311)
T KOG1446|consen  235 PLSATFTPDSKFVLSGSDDGT-----IHVWNLET  263 (311)
T ss_pred             ceeEEECCCCcEEEEecCCCc-----EEEEEcCC
Confidence            257889999999999999998     55555533

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=4.8e-25  Score=170.32  Aligned_cols=242  Identities=17%  Similarity=0.209  Sum_probs=182.6

Q ss_pred             eEecccccceEEEEEcCCC--CEEEEeeCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcE
Q 021925            4 ILMKGHERPLTYLKYNKDG--DLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTA   76 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~--~~l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v   76 (305)
                      -+.+-|.++|++++|+|..  +.+|+|..-|.|-+||+.+.    ..+..+..|..+|.++.|+| +...+++.|.||+|
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            3566789999999999954  58889999999999999532    34556778999999999999 56789999999999


Q ss_pred             EEEecCCCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEE
Q 021925           77 KLWNVETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (305)
                      ++-|++++.....+.   .......+.++.+...++.+.+     .+...+++....     +.....+..|+..|.+++
T Consensus       260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~-----~G~f~~iD~R~~-----~s~~~~~~lh~kKI~sv~  329 (498)
T KOG4328|consen  260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN-----VGNFNVIDLRTD-----GSEYENLRLHKKKITSVA  329 (498)
T ss_pred             eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec-----ccceEEEEeecC-----Cccchhhhhhhcccceee
Confidence            999998764322222   3345566777777777776654     344555555532     233445667888999999


Q ss_pred             EcCCC-CEEEEeeCCCcEEEEeCCCCcEeee-eccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc----CCceEEE
Q 021925          154 WGPLN-RTIISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA----RTLELIK  227 (305)
Q Consensus       154 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~~~~~  227 (305)
                      ++|.. .+|++++.|++.+|||++.-..... +-....|...|.+..|||.+-.|+|.+.|.+|+|||.    ..-.+..
T Consensus       330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~  409 (498)
T KOG4328|consen  330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG  409 (498)
T ss_pred             cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence            99977 5788999999999999986433332 1122269999999999998888999999999999998    4455666


Q ss_pred             EEeeCCC------eeEEEecCCCCcEEEeeCCcE
Q 021925          228 TYVTERP------VNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       228 ~~~~~~~------v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ++.|...      .-...|.|+..++++|--...
T Consensus       410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~  443 (498)
T KOG4328|consen  410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP  443 (498)
T ss_pred             eeeccCcccccccchhheeCCCccEEEEeccCcc
Confidence            6665432      345689999999999865554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.7e-24  Score=166.44  Aligned_cols=240  Identities=15%  Similarity=0.194  Sum_probs=185.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCC--CeeeEEecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecCCCCe
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--GERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      .+.|+++.|+|....+++|+.||+++||.++.  +..++.+.--..+|.+.+|.|+|. .+++++....++.||+++.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            46799999999999999999999999997753  445666666678999999999998 889999999999999998875


Q ss_pred             eEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           87 LFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        87 ~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      ...-.    ....+..+.+++++.+++..+.     .+.+.+....      ..+.+..+ .-.+.+..++|+.+++.|+
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~-----~G~I~lLhak------T~eli~s~-KieG~v~~~~fsSdsk~l~  360 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGN-----NGHIHLLHAK------TKELITSF-KIEGVVSDFTFSSDSKELL  360 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEccc-----CceEEeehhh------hhhhhhee-eeccEEeeEEEecCCcEEE
Confidence            54333    2345678889999999988875     2333322221      11222222 2356789999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC------ceEEEEEe-eCCCe
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART------LELIKTYV-TERPV  235 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~-~~~~v  235 (305)
                      +++.+|.|.+||++...+++.+...  ..-.-++++.++++.+||+|+..|.|.|||.++      .++++.+. ....|
T Consensus       361 ~~~~~GeV~v~nl~~~~~~~rf~D~--G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I  438 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQNSCLHRFVDD--GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI  438 (514)
T ss_pred             EEcCCceEEEEecCCcceEEEEeec--CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheee
Confidence            9999999999999999998888632  122346677889999999999999999999653      35666665 56779


Q ss_pred             eEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925          236 NAVTMSPLLDHVCIGEPQTIKFMLLVYL  263 (305)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (305)
                      ++++|+|+.+.|+.++......+-.+.+
T Consensus       439 tsl~Fn~d~qiLAiaS~~~knalrLVHv  466 (514)
T KOG2055|consen  439 TSLQFNHDAQILAIASRVKKNALRLVHV  466 (514)
T ss_pred             eeeeeCcchhhhhhhhhccccceEEEec
Confidence            9999999999999998665544444443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=1.7e-23  Score=163.95  Aligned_cols=230  Identities=17%  Similarity=0.291  Sum_probs=178.8

Q ss_pred             eccc-ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            6 MKGH-ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         6 l~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      ++++ ++-|.|++|.++|. ++||.++|.|.||+..+.+..+...+|.+.|.+++...+|. |++|+.|+.|..|| ..-
T Consensus       241 fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y  317 (626)
T KOG2106|consen  241 FEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNY  317 (626)
T ss_pred             cccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccc
Confidence            3444 35699999999985 77899999999999988888887779999999999999985 56699999999999 333


Q ss_pred             CeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           85 AQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        85 ~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      +.+...+   ..++++.++-...+  +++++.....+.+.+            .........+|......++.+|+.+.+
T Consensus       318 ~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~------------~~~f~~~v~gh~delwgla~hps~~q~  383 (626)
T KOG2106|consen  318 RKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTL------------ENGFTLTVQGHGDELWGLATHPSKNQL  383 (626)
T ss_pred             cccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeee------------cCCceEEEEecccceeeEEcCCChhhe
Confidence            4444444   33455555544333  444444333332221            123345567888899999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEec
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~  241 (305)
                      ++++.|+.+++|+  ..++.....    -..+..++.|+|.| .+|.|+..|...+.|.++...+..-...+++++++|+
T Consensus       384 ~T~gqdk~v~lW~--~~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ys  456 (626)
T KOG2106|consen  384 LTCGQDKHVRLWN--DHKLEWTKI----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYS  456 (626)
T ss_pred             eeccCcceEEEcc--CCceeEEEE----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEc
Confidence            9999999999999  445555543    46788999999999 9999999999999999997777665578899999999


Q ss_pred             CCCCcEEEeeCCcEEEEE
Q 021925          242 PLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~  259 (305)
                      |+|.+||+|+.|+.+..+
T Consensus       457 p~G~~lAvgs~d~~iyiy  474 (626)
T KOG2106|consen  457 PDGAFLAVGSHDNHIYIY  474 (626)
T ss_pred             CCCCEEEEecCCCeEEEE
Confidence            999999999999984333

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=5.3e-24  Score=169.90  Aligned_cols=248  Identities=17%  Similarity=0.241  Sum_probs=193.5

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCc--EEEEEeCCCcEEEEec
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWNV   81 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~v~vwd~   81 (305)
                      .++.||++.|.++...|.|.+|++|+.||+|+||.+.+|.++.++. ..+.|.|++|+|.+.  .||++-. +++.|-+.
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp  471 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNP  471 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEEeCc
Confidence            3689999999999999999999999999999999999999999887 567899999999654  3444433 33444332


Q ss_pred             CCC--------------------------------------CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEE
Q 021925           82 ETG--------------------------------------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH  123 (305)
Q Consensus        82 ~~~--------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (305)
                      .-|                                      .....+.+...+..+.|+..|.++++......  ...+.
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~--~~~Vl  549 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG--NKSVL  549 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC--cceEE
Confidence            100                                      11234557889999999999999998764221  23344


Q ss_pred             EEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC
Q 021925          124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG  203 (305)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  203 (305)
                      +.++.+.      .....+....+.+.++.|+|...+|+.++. ..|+|||+..+..++.+.   .....|..++.+|.|
T Consensus       550 iHQLSK~------~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~---tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  550 IHQLSKR------KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL---TGSKWISSMSIHPNG  619 (733)
T ss_pred             EEecccc------cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh---cCCeeeeeeeecCCC
Confidence            4444332      122334556778999999999999998876 679999999888887776   567889999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCc-eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925          204 SHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       204 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                      ..|+.|+.|+.+..+|+.-. ++.+++. |...+++++|++.-.++++|+.|+..++.--.+++
T Consensus       620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~  683 (733)
T KOG0650|consen  620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN  683 (733)
T ss_pred             CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence            99999999999999999854 6667776 88899999999999999999998887665555443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=2.7e-24  Score=175.11  Aligned_cols=256  Identities=14%  Similarity=0.168  Sum_probs=182.6

Q ss_pred             eEecccccceEEEEEcCCCCEEEEee--CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC--CCcEEEE
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCA--KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA--DQTAKLW   79 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~--dg~v~vw   79 (305)
                      .++..|+.++++++|+++|+++|+|-  ....+++|++.....+..+..|+..|+|++|+|.++++++.+.  |-.|.+|
T Consensus        72 hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~  151 (1080)
T KOG1408|consen   72 HLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVN  151 (1080)
T ss_pred             heecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhh
Confidence            35667889999999999999999974  5678999999998899999999999999999999999998776  5567888


Q ss_pred             ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCccee------------------------------------------
Q 021925           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME------------------------------------------  117 (305)
Q Consensus        80 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------------------------  117 (305)
                      |.+.+-....-+....|..++|+.++.+++++.+..+.                                          
T Consensus       152 dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicA  231 (1080)
T KOG1408|consen  152 DWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICA  231 (1080)
T ss_pred             hhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccc
Confidence            88766665555666777777777777776665541000                                          


Q ss_pred             --------------------------------------------------------------------------------
Q 021925          118 --------------------------------------------------------------------------------  117 (305)
Q Consensus       118 --------------------------------------------------------------------------------  117 (305)
                                                                                                      
T Consensus       232 estfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q  311 (1080)
T KOG1408|consen  232 ESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQ  311 (1080)
T ss_pred             cceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhccc
Confidence                                                                                            


Q ss_pred             --------------------------------eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC--------
Q 021925          118 --------------------------------LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--------  157 (305)
Q Consensus       118 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------  157 (305)
                                                      .+..+.+|++....   .......+-.|...|+.+.--|-        
T Consensus       312 ~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~---kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~a  388 (1080)
T KOG1408|consen  312 PEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVN---KVGKCSSMLYHSACIWDVENLPCNVHSPTAA  388 (1080)
T ss_pred             ccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccc---cccceeeeeeccceeeeeccccccccCcccc
Confidence                                            01111222221110   01111223345555555544441        


Q ss_pred             ---CCEEEEeeCCCcEEEEeCCCCcEeeeecc----------------------------------ccCCccceEEEEEc
Q 021925          158 ---NRTIISAGEDAIVRIWDTETGKLLKESDK----------------------------------ETGHKKTITSLAKA  200 (305)
Q Consensus       158 ---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------------------~~~~~~~v~~~~~~  200 (305)
                         ..-+.+++.|++|++||+..+..-..+..                                  .-+....+.+++.+
T Consensus       389 clp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS  468 (1080)
T KOG1408|consen  389 CLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS  468 (1080)
T ss_pred             cCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC
Confidence               12488999999999999986221111000                                  01234578999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC---CCCcEEEeeCCcEEEEEEee
Q 021925          201 ADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP---LLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       201 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~---~~~~l~~~~~~~~~~~~~~~  262 (305)
                      |+|++||+|..-|++++||+...+.+..+. |++.|.|+.++.   ..++|++|+.|..+.++.+.
T Consensus       469 p~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  469 PDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             CCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            999999999999999999999888877777 999999999984   34678899999986555544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=4.1e-24  Score=173.04  Aligned_cols=234  Identities=23%  Similarity=0.344  Sum_probs=193.4

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee--EEecCCCcceEE-EEEcC-CCcEEEEEeCCCcEEEEe
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWC-CDVSR-DSMTLITGSADQTAKLWN   80 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~-i~~~~-~~~~l~s~~~dg~v~vwd   80 (305)
                      .+.||+..|..++..+.. .++++|.||++++|+-..++.+  ..+.+|.+-|.. +++.+ ++..+++|+.|+++.+|.
T Consensus         9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~   87 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK   87 (745)
T ss_pred             EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence            578999999999887654 8999999999999997655544  346678887777 88875 555799999999999999


Q ss_pred             cCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925           81 VETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (305)
Q Consensus        81 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (305)
                      ..+..+...+. |+..|.++....++.++..+      ++....+|...        +....+.+|+..|++++.-|.+ 
T Consensus        88 ~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgS------WD~TakvW~~~--------~l~~~l~gH~asVWAv~~l~e~-  152 (745)
T KOG0301|consen   88 LSQAEPLYTLKGHKSNVCSLSIGEDGTLISGS------WDSTAKVWRIG--------ELVYSLQGHTASVWAVASLPEN-  152 (745)
T ss_pred             cCCCCchhhhhccccceeeeecCCcCceEecc------cccceEEecch--------hhhcccCCcchheeeeeecCCC-
Confidence            99999998887 89999999988888844333      35566666653        4455589999999999999988 


Q ss_pred             EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  238 (305)
                      .++||+.|..|++|.-  ++.++++.   +|...|+.+++-+++ .+++++.||.|++|++ +++.+.+.. |..-+.++
T Consensus       153 ~~vTgsaDKtIklWk~--~~~l~tf~---gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsi  225 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKG--GTLLKTFS---GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSI  225 (745)
T ss_pred             cEEeccCcceeeeccC--Cchhhhhc---cchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEE
Confidence            7899999999999985  67788887   899999999999875 4789999999999999 577666665 88999999


Q ss_pred             EecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          239 TMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                      +..+++..+++++.|+.     +++|..
T Consensus       226 s~~~~~~~Ivs~gEDrt-----lriW~~  248 (745)
T KOG0301|consen  226 SMALSDGLIVSTGEDRT-----LRIWKK  248 (745)
T ss_pred             EecCCCCeEEEecCCce-----EEEeec
Confidence            98888899999999998     555543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.1e-24  Score=153.28  Aligned_cols=208  Identities=18%  Similarity=0.287  Sum_probs=159.8

Q ss_pred             EecccccceEEEEEcC--CCCEEEEeeCCCceEEEEcCCCee--eEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEE
Q 021925            5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKL   78 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~v   78 (305)
                      .|.||.+||..++|..  -|.+||+++.||.|.||.-++++-  ......|+..|++++|.|.  |-.|++++.||.|.|
T Consensus        51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv  130 (299)
T KOG1332|consen   51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV  130 (299)
T ss_pred             EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence            5899999999999965  899999999999999999877743  3445679999999999994  568899999999999


Q ss_pred             EecCCCC--eeEE--EeeCCCceEEEEecC---C-----------ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE
Q 021925           79 WNVETGA--QLFT--FNFDSPARSVDFAVG---D-----------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVL  140 (305)
Q Consensus        79 wd~~~~~--~~~~--~~~~~~v~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (305)
                      .+.++..  ....  ..|.-.+.+++|.|.   |           +.++.++     .+..+.+|.....    .-....
T Consensus       131 l~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG-----cDn~VkiW~~~~~----~w~~e~  201 (299)
T KOG1332|consen  131 LTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG-----CDNLVKIWKFDSD----SWKLER  201 (299)
T ss_pred             EEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC-----CccceeeeecCCc----chhhhh
Confidence            9987651  1222  227888999999986   3           2233333     2556667766543    223344


Q ss_pred             EEeccCCCeeEEEEcCCC----CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925          141 ILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (305)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  216 (305)
                      .+.+|.+-|..++|.|.-    .+|+++++||++.||..+.................+..+.|++.|+.|++++.|+.|.
T Consensus       202 ~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt  281 (299)
T KOG1332|consen  202 TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT  281 (299)
T ss_pred             hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence            589999999999999975    4899999999999998774322222222224567899999999999999999999999


Q ss_pred             EEEcC
Q 021925          217 LWDAR  221 (305)
Q Consensus       217 iwd~~  221 (305)
                      +|.-.
T Consensus       282 lwke~  286 (299)
T KOG1332|consen  282 LWKEN  286 (299)
T ss_pred             EEEeC
Confidence            99744

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4e-24  Score=165.60  Aligned_cols=212  Identities=19%  Similarity=0.305  Sum_probs=168.4

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcC---------CCeeeEEecCCCcceEEEEEcCCC--cEEEEEeCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---------NGERLGTYRGHNGAVWCCDVSRDS--MTLITGSADQ   74 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~---------~~~~~~~~~~~~~~v~~i~~~~~~--~~l~s~~~dg   74 (305)
                      +.+|-.+|+|+.|+.||.+|+||+.||.|.+|.+.         +-+++..+..|.-+|+++...+.|  .+|+|+|.|.
T Consensus       119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~  198 (476)
T KOG0646|consen  119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR  198 (476)
T ss_pred             HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence            57899999999999999999999999999999764         346778899999999999998753  5899999999


Q ss_pred             cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEE-----eecccCCCCCceEEEEeccCC--
Q 021925           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR-----IARDPADQGGESVLILKGPQG--  147 (305)
Q Consensus        75 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--  147 (305)
                      ++++||+..+..+.++..+..+.+++..|.+..+++++............+.     +...........+..+.+|.+  
T Consensus       199 t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~  278 (476)
T KOG0646|consen  199 TIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES  278 (476)
T ss_pred             eEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence            9999999999999999999999999999999999998874332222211111     011112244567788889988  


Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEE-EeCCCeEEEEEc
Q 021925          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDA  220 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~  220 (305)
                      .|+|++.+-||..|++|+.||.|+|||+.+.++++++.   ...++|+.+.+.|-.+-... -.....+-.|++
T Consensus       279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~---~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ---TSKGPVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh---hhccccceeEeeccccceecccccCccCCchHh
Confidence            99999999999999999999999999999999999886   36788999998664332222 223334455544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=2.1e-24  Score=169.39  Aligned_cols=216  Identities=18%  Similarity=0.235  Sum_probs=153.3

Q ss_pred             EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe----eEEEe--eCCCceEEEEecCCceEEEeCCccee--
Q 021925           46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ----LFTFN--FDSPARSVDFAVGDKLAVITTDPFME--  117 (305)
Q Consensus        46 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~----~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~--  117 (305)
                      ..+++|...|.++++.|.|-.|++|+.|-+|++||+.....    ...+.  ....+.++.|++.+..+++.+.....  
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            45677889999999999999999999999999999875432    12222  45689999999988777766543221  


Q ss_pred             eeeeEEE-EEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcE-eeeec--cccCCcc
Q 021925          118 LNSAIHV-KRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKL-LKESD--KETGHKK  192 (305)
Q Consensus       118 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~--~~~~~~~  192 (305)
                      ++..... ....+.  .+-..-...-++|...+++.+|+|.. ..+++++.||++++||+...+. .+.+.  ...+..-
T Consensus       241 ~DRdG~~~~e~~KG--DQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKG--DQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             EccCCceeeeeecc--chhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            1111110 001000  01111223457899999999999987 5788999999999999986442 22222  2224456


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce--EEEEEe--eCC--CeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LIKTYV--TER--PVNAVTMSPLLDHVCIGEPQTIKFMLLVYL  263 (305)
Q Consensus       193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~--~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (305)
                      +++.++|+|+|+.||+|+.||.|.+|+..+..  +...+.  |..  .|+|++||++|++|++-+.|+...+|.+..
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq  395 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ  395 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence            78999999999999999999999999986542  223333  444  899999999999999999999844444443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.93  E-value=2.6e-23  Score=154.36  Aligned_cols=243  Identities=19%  Similarity=0.319  Sum_probs=177.1

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCC----e--------eeEEec-CCCcceEEEEEc-------CCCcEEEEEeC
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNG----E--------RLGTYR-GHNGAVWCCDVS-------RDSMTLITGSA   72 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~--------~~~~~~-~~~~~v~~i~~~-------~~~~~l~s~~~   72 (305)
                      ...+.|+|||..|++-+.|..+.+|++...    +        ...+++ .....|..-+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            456889999999999999999999987631    0        011111 123567777774       57789999999


Q ss_pred             CCcEEEEecCCCCeeEEEe---eC---CCceEEEEecCCceEEEeCCcceeeeeeEE---------------------EE
Q 021925           73 DQTAKLWNVETGAQLFTFN---FD---SPARSVDFAVGDKLAVITTDPFMELNSAIH---------------------VK  125 (305)
Q Consensus        73 dg~v~vwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~  125 (305)
                      +.-|++||.-+|+...++.   +.   ....+++|+|+|..++++....+......+                     +.
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            9999999999999888776   22   245789999999999998764333322100                     00


Q ss_pred             EeecccC------------------CCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCC-CcEeeeec
Q 021925          126 RIARDPA------------------DQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTET-GKLLKESD  185 (305)
Q Consensus       126 ~~~~~~~------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~~~  185 (305)
                      .+...+.                  .....+...+.+|.+.|+.++|.++|+.|++|.. |..|..||++. +.++..+.
T Consensus       212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~  291 (406)
T KOG2919|consen  212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE  291 (406)
T ss_pred             eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence            0000000                  1234567778899999999999999999999986 78999999986 44555555


Q ss_pred             cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ...+....-.-....|++++|++|+.||.|++||+++ +..+..+. +...++.++++|--++++++++...
T Consensus       292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~  363 (406)
T KOG2919|consen  292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRI  363 (406)
T ss_pred             hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCcee
Confidence            3222222333455678999999999999999999998 67666665 7788999999999888888876653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=9.4e-24  Score=174.30  Aligned_cols=199  Identities=22%  Similarity=0.315  Sum_probs=175.6

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEe---cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      -...+++++.++.|++.+.|...|.|-+|++++|-...++   ..|+++|++++...-++.+++++.+|.++.||..+..
T Consensus       447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~  526 (910)
T KOG1539|consen  447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV  526 (910)
T ss_pred             cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence            4467999999999999999999999999999999988888   4899999999998888899999999999999999999


Q ss_pred             eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      .+..+.....+.++.++.....++++.+     +..+.+.+..      ..+.++.+.+|.+.|++++|||||++|++++
T Consensus       527 l~~~l~l~~~~~~iv~hr~s~l~a~~~d-----df~I~vvD~~------t~kvvR~f~gh~nritd~~FS~DgrWlisas  595 (910)
T KOG1539|consen  527 LKKSLRLGSSITGIVYHRVSDLLAIALD-----DFSIRVVDVV------TRKVVREFWGHGNRITDMTFSPDGRWLISAS  595 (910)
T ss_pred             eeeeeccCCCcceeeeeehhhhhhhhcC-----ceeEEEEEch------hhhhhHHhhccccceeeeEeCCCCcEEEEee
Confidence            9999999999999999998888877766     3334444442      2356777899999999999999999999999


Q ss_pred             CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-CeEEEEEcCC
Q 021925          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KSAKLWDART  222 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~  222 (305)
                      .|++|++||+.++.++-.+.    -..+.+++.|+|+|.+||+...| .-|++|--.+
T Consensus       596 mD~tIr~wDlpt~~lID~~~----vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  596 MDSTIRTWDLPTGTLIDGLL----VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             cCCcEEEEeccCcceeeeEe----cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            99999999999999988885    67889999999999999999988 5699997543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.6e-25  Score=181.96  Aligned_cols=194  Identities=20%  Similarity=0.362  Sum_probs=175.5

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      |.+|+.+|.++.|+++..+|++|+.+|+|++||+++++.++++.+|...+.++.|+|-+.+.++|+.|+.+++||.+...
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G  145 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG  145 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      +...+. +...+..+.|+|+|.+++.+++     +..+++|+..      .++....+..|.+.+..+.++|..-.+++|
T Consensus       146 c~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-----d~tvki~d~~------agk~~~ef~~~e~~v~sle~hp~e~Lla~G  214 (825)
T KOG0267|consen  146 CSHTYKSHTRVVDVLRLSPDGRWVASGGE-----DNTVKIWDLT------AGKLSKEFKSHEGKVQSLEFHPLEVLLAPG  214 (825)
T ss_pred             ceeeecCCcceeEEEeecCCCceeeccCC-----cceeeeeccc------ccccccccccccccccccccCchhhhhccC
Confidence            888887 7777889999999999999887     5667777764      346677788999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC
Q 021925          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK  213 (305)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  213 (305)
                      +.|+++++||+++-+.+....   .....|.+..|+|++..+++|..+.
T Consensus       215 s~d~tv~f~dletfe~I~s~~---~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  215 SSDRTVRFWDLETFEVISSGK---PETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CCCceeeeeccceeEEeeccC---CccCCceeeeecCCceeeecCchhh
Confidence            999999999999888877776   4578899999999999888887654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=1.6e-24  Score=169.74  Aligned_cols=194  Identities=23%  Similarity=0.375  Sum_probs=172.9

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      -.+.+++.+||.+..+++..||.|.|||+.+...++.+++|.+.+.||.+++||..|-+|+-|.+|+.||+++++.+...
T Consensus       510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh  589 (705)
T KOG0639|consen  510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH  589 (705)
T ss_pred             hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcE
Q 021925           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (305)
Q Consensus        91 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  170 (305)
                      .+.+.|.++.+.|.+.+++++.....     +.+...       .+.....+.-|.+.|.++.|.+.|+++++.+.|.-+
T Consensus       590 dF~SQIfSLg~cP~~dWlavGMens~-----vevlh~-------skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlL  657 (705)
T KOG0639|consen  590 DFSSQIFSLGYCPTGDWLAVGMENSN-----VEVLHT-------SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL  657 (705)
T ss_pred             hhhhhheecccCCCccceeeecccCc-----EEEEec-------CCccceeecccccEEEEEEecccCceeeecCchhhh
Confidence            99999999999999999999876322     222111       234456677899999999999999999999999999


Q ss_pred             EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      ..|....|..+....    ....|.++.++.|.++++||+.|....+|.+
T Consensus       658 nawrtPyGasiFqsk----E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  658 NAWRTPYGASIFQSK----ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             hhccCccccceeecc----ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            999999998887775    6789999999999999999999998888865

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.91  E-value=5.5e-23  Score=156.40  Aligned_cols=195  Identities=22%  Similarity=0.315  Sum_probs=157.4

Q ss_pred             EecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCc
Q 021925            5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQT   75 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~   75 (305)
                      ++.||+++|..++|+| +...||+||.|.+|.||.+..+       +++..+.+|...|.-++|+|. .+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            3579999999999999 6678999999999999998764       457788899999999999994 468899999999


Q ss_pred             EEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (305)
Q Consensus        76 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (305)
                      |.+||+.+++.+.++                                                    . |...|.++.|+
T Consensus       156 v~iWnv~tgeali~l----------------------------------------------------~-hpd~i~S~sfn  182 (472)
T KOG0303|consen  156 VSIWNVGTGEALITL----------------------------------------------------D-HPDMVYSMSFN  182 (472)
T ss_pred             EEEEeccCCceeeec----------------------------------------------------C-CCCeEEEEEec
Confidence            999999998765432                                                    2 77888999999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCcc-ceEEEEEcCCCCEEEEEe---CCCeEEEEEcCCceE---EEE
Q 021925          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-TITSLAKAADGSHFLTGS---LDKSAKLWDARTLEL---IKT  228 (305)
Q Consensus       156 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~  228 (305)
                      .+|.+|++.+.|..|+|||.++++.+..-.   +|.+ .-..+.|-.+|.++.||-   ++..+.+||..+.+.   +.+
T Consensus       183 ~dGs~l~TtckDKkvRv~dpr~~~~v~e~~---~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e  259 (472)
T KOG0303|consen  183 RDGSLLCTTCKDKKVRVIDPRRGTVVSEGV---AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE  259 (472)
T ss_pred             cCCceeeeecccceeEEEcCCCCcEeeecc---cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEE
Confidence            999999999999999999999999988775   4443 344566777888554443   378899999776532   344


Q ss_pred             EeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          229 YVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       229 ~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      +...+.|.---+.|+...+..++..+.
T Consensus       260 lDtSnGvl~PFyD~dt~ivYl~GKGD~  286 (472)
T KOG0303|consen  260 LDTSNGVLLPFYDPDTSIVYLCGKGDS  286 (472)
T ss_pred             eccCCceEEeeecCCCCEEEEEecCCc
Confidence            456777877788999998877654444

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1e-23  Score=158.62  Aligned_cols=208  Identities=14%  Similarity=0.229  Sum_probs=163.8

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC---------------------------C-----------eee
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN---------------------------G-----------ERL   45 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~---------------------------~-----------~~~   45 (305)
                      ..++.|.+.|+.++++.  ..+++++.|++|+.|.++.                           |           .++
T Consensus       103 ~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv  180 (433)
T KOG0268|consen  103 RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPV  180 (433)
T ss_pred             heeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCcc
Confidence            35889999999999987  6788889999999997431                           1           122


Q ss_pred             EEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEE
Q 021925           46 GTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV  124 (305)
Q Consensus        46 ~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (305)
                      ..+.--.+.|.++.|+| ....|++|+.|+.|.+||++++.++...........++|+|..-.++++..     +..+..
T Consensus       181 ~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~E-----D~nlY~  255 (433)
T KOG0268|consen  181 SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANE-----DHNLYT  255 (433)
T ss_pred             ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccc-----ccccee
Confidence            23333345678888999 446788888999999999999999999999999999999996555555554     333444


Q ss_pred             EEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC
Q 021925          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS  204 (305)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  204 (305)
                      .++...     ..++....+|.+.|.++.|||.|+.+++|+.|.+|+||..+.+.....+..  ..-..|.++.|+.|.+
T Consensus       256 ~DmR~l-----~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~Dsk  328 (433)
T KOG0268|consen  256 YDMRNL-----SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMDSK  328 (433)
T ss_pred             hhhhhh-----cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEecccc
Confidence            444322     356778899999999999999999999999999999999987765444431  2346799999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCceE
Q 021925          205 HFLTGSLDKSAKLWDARTLEL  225 (305)
Q Consensus       205 ~l~~~~~dg~i~iwd~~~~~~  225 (305)
                      ++++||.|+.|++|.....+.
T Consensus       329 yi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  329 YIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             EEEecCCCcceeeeecchhhh
Confidence            999999999999998765433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=4e-23  Score=167.34  Aligned_cols=231  Identities=17%  Similarity=0.249  Sum_probs=176.1

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   91 (305)
                      .|..++|-|||..|+.+. +..+.+||..+|..+.++++|++.|.+++|+.||+.+++|+.|+.|.+|+-+ -+-+..+.
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYS   91 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYS   91 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeec
Confidence            799999999999888765 4589999999999999999999999999999999999999999999999854 45566788


Q ss_pred             eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (305)
Q Consensus        92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  171 (305)
                      |...+.||.|+|-...+++++-.      ....|....       +.+. -......+.+.+|..||++++.|-.+|+|.
T Consensus        92 H~D~IQCMsFNP~~h~LasCsLs------dFglWS~~q-------K~V~-K~kss~R~~~CsWtnDGqylalG~~nGTIs  157 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQLASCSLS------DFGLWSPEQ-------KSVS-KHKSSSRIICCSWTNDGQYLALGMFNGTIS  157 (1081)
T ss_pred             cCCeeeEeecCchHHHhhhcchh------hccccChhh-------hhHH-hhhhheeEEEeeecCCCcEEEEeccCceEE
Confidence            99999999999999888877632      222222211       1111 112345678899999999999999999999


Q ss_pred             EEeCCCCcEeeeeccccCCccceEEEEEc----------------------------------------------CCCCE
Q 021925          172 IWDTETGKLLKESDKETGHKKTITSLAKA----------------------------------------------ADGSH  205 (305)
Q Consensus       172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~----------------------------------------------~~~~~  205 (305)
                      +=+- ++++...++.+.+.+++|.+++|+                                              ++|.+
T Consensus       158 iRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy  236 (1081)
T KOG1538|consen  158 IRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEY  236 (1081)
T ss_pred             eecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcE
Confidence            8764 344444444333444455554444                                              45667


Q ss_pred             EEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925          206 FLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       206 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                      ++.|+.|+.+.+|- +.|-.+.++. ....|+.++..|+++++++|+.||.....+
T Consensus       237 ~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  237 ILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             EEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence            77777777777775 4566666555 667899999999999999999999854443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4.1e-23  Score=159.16  Aligned_cols=210  Identities=19%  Similarity=0.289  Sum_probs=165.6

Q ss_pred             ecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925            6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      -++|+..|.+++|+.+ .+.||+||.|.+|++||+.++++..++..|.+.|.+++|+| ....|++|+.|++|.+.|.+.
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            3579999999999884 45899999999999999999999999999999999999999 567899999999999999983


Q ss_pred             -CCeeEEEeeCCCceEEEEecCCceEE-EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CE
Q 021925           84 -GAQLFTFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RT  160 (305)
Q Consensus        84 -~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  160 (305)
                       ++.-..++..+.|..++|.|.....+ ++++     ++.++..+++.     .++++..++.|.++|.++++++.. .+
T Consensus       319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td-----dG~v~~~D~R~-----~~~~vwt~~AHd~~ISgl~~n~~~p~~  388 (463)
T KOG0270|consen  319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD-----DGTVYYFDIRN-----PGKPVWTLKAHDDEISGLSVNIQTPGL  388 (463)
T ss_pred             ccccCceEEeccceEEEEecCCCceeEEEecC-----CceEEeeecCC-----CCCceeEEEeccCCcceEEecCCCCcc
Confidence             44556677899999999999665444 4433     34445555543     348899999999999999999876 57


Q ss_pred             EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceEE
Q 021925          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELI  226 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  226 (305)
                      +++++.|+.|++|++....+...... .-.-+...|+++.|+-. .++.|+..+.+++||+.+..++
T Consensus       389 l~t~s~d~~Vklw~~~~~~~~~v~~~-~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  389 LSTASTDKVVKLWKFDVDSPKSVKEH-SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             eeeccccceEEEEeecCCCCcccccc-cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            88999999999999975444222210 01123466777777654 5788888899999999877654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=9.5e-23  Score=165.26  Aligned_cols=252  Identities=21%  Similarity=0.208  Sum_probs=183.0

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-----------------------------------------
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----------------------------------------   43 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-----------------------------------------   43 (305)
                      ++.||++.|+++.|+|.+..|++++.|+++.+|...+..                                         
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            366999999999999999999999999999999654320                                         


Q ss_pred             -----------eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-CeeEEEe----eCCCceEEEEecCCce
Q 021925           44 -----------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFN----FDSPARSVDFAVGDKL  107 (305)
Q Consensus        44 -----------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~----~~~~v~~~~~~~~~~~  107 (305)
                                 ....+.+|.+.|++++|+|.|++|+++|.|-+-+++-.-.. +.-+.+.    |.....|+++-+....
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~  421 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ  421 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence                       01113479999999999999999999999999999865411 1122222    6667888888886555


Q ss_pred             EEEeCCcceeeee----------------------------eEEEEEeeccc--------------------C-------
Q 021925          108 AVITTDPFMELNS----------------------------AIHVKRIARDP--------------------A-------  132 (305)
Q Consensus       108 ~~~~~~~~~~~~~----------------------------~~~~~~~~~~~--------------------~-------  132 (305)
                      ++.+.+..+....                            .+....+....                    .       
T Consensus       422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~  501 (764)
T KOG1063|consen  422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT  501 (764)
T ss_pred             eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence            5555441110000                            00000000000                    0       


Q ss_pred             C----------CCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEE
Q 021925          133 D----------QGGESVLILKGPQGRINRAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSL  197 (305)
Q Consensus       133 ~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  197 (305)
                      .          .....++++.+|...|++++.+|+++.+|+++..     ..|++|+..+...++.+.   +|.-.|+.+
T Consensus       502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~---~HsLTVT~l  578 (764)
T KOG1063|consen  502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE---GHSLTVTRL  578 (764)
T ss_pred             CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec---ccceEEEEE
Confidence            0          0012235677899999999999999999999854     469999999988888777   899999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCceE-EEE---Ee-eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925          198 AKAADGSHFLTGSLDKSAKLWDARTLEL-IKT---YV-TERPVNAVTMSPLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~---~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~  259 (305)
                      +|||||++|++.|.|.++.+|....... ...   .+ |..-|+++.|+|++.++++++.|....++
T Consensus       579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW  645 (764)
T KOG1063|consen  579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW  645 (764)
T ss_pred             EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence            9999999999999999999998753321 112   22 67778999999999999999999984333

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.7e-22  Score=165.52  Aligned_cols=241  Identities=14%  Similarity=0.162  Sum_probs=189.2

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      |-.+.-|...|.+++..  +.++++|+.+++|.+|...+++.-..+....-++.+++|+.+|+++|.||.|-.|++-+..
T Consensus        49 P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~  126 (933)
T KOG1274|consen   49 PETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD  126 (933)
T ss_pred             CchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc
Confidence            33444477778887764  4599999999999999999988766666677899999999999999999999999999998


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE-Eec-cCCCeeEEEEcCCCC
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKG-PQGRINRAVWGPLNR  159 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~i~~~~~~~~~~  159 (305)
                      .......+. +..+|.++.|+|.++++++.+-     ++.+.+|++...........+.. ... ....+..++|+|++.
T Consensus       127 D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-----dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g  201 (933)
T KOG1274|consen  127 DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-----DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG  201 (933)
T ss_pred             ccchheeecccCCceeeeeEcCCCCEEEEEec-----CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence            887777666 9999999999999999999864     67777887753322111111111 011 145567899999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEE
Q 021925          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT  239 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~  239 (305)
                      .++..+.|+.|++|+...+.....+... .+...+..++|+|+|++||+++.||.|.|||.++.+.   ......|.+++
T Consensus       202 ~la~~~~d~~Vkvy~r~~we~~f~Lr~~-~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~a  277 (933)
T KOG1274|consen  202 TLAVPPVDNTVKVYSRKGWELQFKLRDK-LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEA  277 (933)
T ss_pred             eEEeeccCCeEEEEccCCceeheeeccc-ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEe
Confidence            9999999999999999999888887643 2344599999999999999999999999999998222   23566799999


Q ss_pred             ecCCCCcEEEeeCCc
Q 021925          240 MSPLLDHVCIGEPQT  254 (305)
Q Consensus       240 ~~~~~~~l~~~~~~~  254 (305)
                      |.|+.+.+-.-...+
T Consensus       278 w~p~~n~it~~~~~g  292 (933)
T KOG1274|consen  278 WKPNANAITLITALG  292 (933)
T ss_pred             cCCCCCeeEEEeecc
Confidence            999988765544333

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.7e-22  Score=149.92  Aligned_cols=204  Identities=19%  Similarity=0.226  Sum_probs=151.3

Q ss_pred             EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe-----eEEEeeCCCceEEEEecCCceEEEeCCcceeeee
Q 021925           46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ-----LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS  120 (305)
Q Consensus        46 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  120 (305)
                      ..+++|.+.|++++|+.||++|++++.|+.|++|+++....     +...-.-+..+.+.|.||-+.+++....    ..
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~----g~  155 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR----GN  155 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc----CC
Confidence            35679999999999999999999999999999999875422     2111133477889999998777665431    23


Q ss_pred             eEEEEEeecccCCCCC------ceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccce
Q 021925          121 AIHVKRIARDPADQGG------ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI  194 (305)
Q Consensus       121 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  194 (305)
                      .+.++.+.........      ......+.|+-.+..+-...++++|++++.|..|.+||++ |+.+..+.   .....-
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id---tnq~~n  231 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID---TNQSSN  231 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec---cccccc
Confidence            3444444332221111      1112334566777777788888999999999999999998 88888876   344556


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcC---Cc-----eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925          195 TSLAKAADGSHFLTGSLDKSAKLWDAR---TL-----ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKF  257 (305)
Q Consensus       195 ~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~  257 (305)
                      +..+.||+|+++++++..--|++|..-   .|     ..+.++. |.+.|..++|+|+.+.+++.+.||...
T Consensus       232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr  303 (420)
T KOG2096|consen  232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR  303 (420)
T ss_pred             cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEE
Confidence            677899999999999999999999863   22     2233344 889999999999999999999999843

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=1.8e-20  Score=149.49  Aligned_cols=215  Identities=17%  Similarity=0.153  Sum_probs=160.9

Q ss_pred             eEEEEEcCCCCEEEEe-eCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC-cEEEEecCCCCeeEEE
Q 021925           13 LTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ-TAKLWNVETGAQLFTF   90 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-~v~vwd~~~~~~~~~~   90 (305)
                      +..++|+|+++.++++ +.++.+++||+.+++.+..+.. ...+.+++|+|+++.+++++.++ .+.+||.++++.....
T Consensus        75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~  153 (300)
T TIGR03866        75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV  153 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence            5678999999977654 5689999999998887777763 34568899999999999888765 4677899888777666


Q ss_pred             eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-------CCCeeEEEEcCCCCEEEE
Q 021925           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-------QGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        91 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~  163 (305)
                      .....+..++|++++..++++..    ..+.+.++++...      +....+..+       ......++++|++++++.
T Consensus       154 ~~~~~~~~~~~s~dg~~l~~~~~----~~~~v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~  223 (300)
T TIGR03866       154 LVDQRPRFAEFTADGKELWVSSE----IGGTVSVIDVATR------KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV  223 (300)
T ss_pred             EcCCCccEEEECCCCCEEEEEcC----CCCEEEEEEcCcc------eeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence            66667788999999998866542    1234555555321      222222111       112346889999998654


Q ss_pred             e-eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceEEEEEeeCCCeeEEEec
Q 021925          164 A-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (305)
Q Consensus       164 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~  241 (305)
                      + +.++.+.+||+++++....+.    +...+.+++|+|+|++|+++ +.+|.|++||+++++.+..+..+...+.++++
T Consensus       224 ~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  299 (300)
T TIGR03866       224 ALGPANRVAVVDAKTYEVLDYLL----VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVR  299 (300)
T ss_pred             EcCCCCeEEEEECCCCcEEEEEE----eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeC
Confidence            4 456789999999888776553    34578899999999999876 46899999999999999999977778999887


Q ss_pred             C
Q 021925          242 P  242 (305)
Q Consensus       242 ~  242 (305)
                      |
T Consensus       300 ~  300 (300)
T TIGR03866       300 P  300 (300)
T ss_pred             C
Confidence            6

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=3.5e-22  Score=160.61  Aligned_cols=251  Identities=18%  Similarity=0.176  Sum_probs=181.0

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEE--ecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--YRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~   82 (305)
                      ...|...|.++.|-|....|++++.|.+++.||+.+.+....  +.+|.+.|.+++|.| |...|++|+.||.+.|||++
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            457999999999999767899999999999999999888776  889999999999999 55688999999999999987


Q ss_pred             CCCe--------------------eE-------E-EeeCCCceE---EEEecCCceEEEeCCcceeeeeeEEEEEeeccc
Q 021925           83 TGAQ--------------------LF-------T-FNFDSPARS---VDFAVGDKLAVITTDPFMELNSAIHVKRIARDP  131 (305)
Q Consensus        83 ~~~~--------------------~~-------~-~~~~~~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (305)
                      -...                    ..       . ......+.+   +.+..|+..++.++.    .++.+++|++.+..
T Consensus       176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga----~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA----ADSTIKVWDLRKNY  251 (720)
T ss_pred             ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC----CCcceEEEeecccc
Confidence            3220                    00       0 002223333   555666777766654    47889999998876


Q ss_pred             CCCCCceEEEEecc-----CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCc--EeeeeccccCCccceEEEEEcCCCC
Q 021925          132 ADQGGESVLILKGP-----QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGS  204 (305)
Q Consensus       132 ~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~  204 (305)
                      .....++.....-+     .-.+.++.....|.+|++.+.|+.|++||+....  ++..+.......-.+ .-..+|++.
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~  330 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDC  330 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCc
Confidence            65555554443333     3356777888888999998899999999998643  333332111111122 234689999


Q ss_pred             EEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCc-EEEeeCCcEEEEEEeehhhh
Q 021925          205 HFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDH-VCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       205 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~  266 (305)
                      ++++|+.|...++|.+.+.+.--...  |...|++++|.|...- ++++++|..     +++|.+
T Consensus       331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~-----~kiW~l  390 (720)
T KOG0321|consen  331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFR-----VKIWRL  390 (720)
T ss_pred             eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcc-----eEEEec
Confidence            99999999999999998765433322  7788999999886543 666665555     555555

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2e-21  Score=143.49  Aligned_cols=234  Identities=16%  Similarity=0.237  Sum_probs=170.7

Q ss_pred             ecccccceEEEEEcC--CCCEEEEeeCCCceEEEEcCC---------CeeeEEecCCCcceEEEEEcC--CCcEEEEEeC
Q 021925            6 MKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADN---------GERLGTYRGHNGAVWCCDVSR--DSMTLITGSA   72 (305)
Q Consensus         6 l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~---------~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~   72 (305)
                      -+.|.+.|..+.|.+  -|+.+|+++.|+++.||.-..         -....++....+.|++++|.|  -|-.|++++.
T Consensus        55 Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a  134 (361)
T KOG2445|consen   55 WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA  134 (361)
T ss_pred             EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc
Confidence            467999999999965  689999999999999996421         123456667788999999999  5678999999


Q ss_pred             CCcEEEEecCCCCeeEE------Ee--------eCCCceEEEEecC---CceEEEeCCcceeeeeeEEEEEeecccCCCC
Q 021925           73 DQTAKLWNVETGAQLFT------FN--------FDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQG  135 (305)
Q Consensus        73 dg~v~vwd~~~~~~~~~------~~--------~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (305)
                      ||.|+||+....-.+..      ++        +..+..|+.|+|.   ..+++++.+......+...++.....  ...
T Consensus       135 DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~--~rK  212 (361)
T KOG2445|consen  135 DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN--GRK  212 (361)
T ss_pred             CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC--cce
Confidence            99999998754432222      22        4556778889873   46777777653333334444443322  123


Q ss_pred             CceEEEEeccCCCeeEEEEcCCC----CEEEEeeCCCcEEEEeCCCCc-----------------EeeeeccccCCccce
Q 021925          136 GESVLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETGK-----------------LLKESDKETGHKKTI  194 (305)
Q Consensus       136 ~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v  194 (305)
                      -..+..+.+|..+|++++|.|+-    ..||+++.|| |+||.++...                 ++..+....+|++.|
T Consensus       213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V  291 (361)
T KOG2445|consen  213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV  291 (361)
T ss_pred             eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce
Confidence            34556677999999999999973    4789999999 9999987311                 233344455899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcC---CceEEEEEeeCCCeeEEEecC
Q 021925          195 TSLAKAADGSHFLTGSLDKSAKLWDAR---TLELIKTYVTERPVNAVTMSP  242 (305)
Q Consensus       195 ~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~  242 (305)
                      ..+.|+-.|..|++.+.||.||+|...   ..++...+..+..+....+++
T Consensus       292 Wrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~  342 (361)
T KOG2445|consen  292 WRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ  342 (361)
T ss_pred             EEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence            999999999999999999999999754   345666666665555555543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=5.4e-22  Score=160.93  Aligned_cols=250  Identities=17%  Similarity=0.265  Sum_probs=193.0

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      .+.||.+.|++++|+|.|++|++++.|-+-|++-.-..    -.+.+-+-|...++|++|-+....+++|.....+++|+
T Consensus       356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~  435 (764)
T KOG1063|consen  356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE  435 (764)
T ss_pred             ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence            46899999999999999999999999999999864411    12333345888899999998666889999999999998


Q ss_pred             cC-------------------------------------------CCCe-------------------------------
Q 021925           81 VE-------------------------------------------TGAQ-------------------------------   86 (305)
Q Consensus        81 ~~-------------------------------------------~~~~-------------------------------   86 (305)
                      ..                                           +|..                               
T Consensus       436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw  515 (764)
T KOG1063|consen  436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW  515 (764)
T ss_pred             CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence            65                                           0000                               


Q ss_pred             ---eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           87 ---LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        87 ---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                         .+.+.|...+.+++.+|++++++++..........+.+|.....      .....+.+|.-.|+.++||||+++|++
T Consensus       516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W------~~~~~L~~HsLTVT~l~FSpdg~~LLs  589 (764)
T KOG1063|consen  516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW------LQVQELEGHSLTVTRLAFSPDGRYLLS  589 (764)
T ss_pred             hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch------hhhheecccceEEEEEEECCCCcEEEE
Confidence               00112455789999999999999998877777777777777543      445578999999999999999999999


Q ss_pred             eeCCCcEEEEeCCCCcE-eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eEEEE---EeeCCCeeE
Q 021925          164 AGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKT---YVTERPVNA  237 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~---~~~~~~v~~  237 (305)
                      .+.|.++.+|....... -..+.....|..-|.++.|+|++.+++|+|.|.+|++|.....  +.+..   ..+..+|+.
T Consensus       590 vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA  669 (764)
T KOG1063|consen  590 VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA  669 (764)
T ss_pred             eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence            99999999999854321 1222234479999999999999999999999999999998877  44443   347889999


Q ss_pred             EEecCCC-----CcEEEeeCCcEEEEEE
Q 021925          238 VTMSPLL-----DHVCIGEPQTIKFMLL  260 (305)
Q Consensus       238 ~~~~~~~-----~~l~~~~~~~~~~~~~  260 (305)
                      +++.|-.     ..+++|-..|.+.++.
T Consensus       670 v~~~~~~~~e~~~~vavGle~GeI~l~~  697 (764)
T KOG1063|consen  670 VAYLPVDHNEKGDVVAVGLEKGEIVLWR  697 (764)
T ss_pred             EEeeccccccccceEEEEecccEEEEEe
Confidence            9987632     2566676666644433

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=2.1e-22  Score=157.66  Aligned_cols=218  Identities=12%  Similarity=0.152  Sum_probs=180.8

Q ss_pred             EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeC
Q 021925           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD   93 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~   93 (305)
                      .|++......++++|+..+.|+|||++...+.+.+++|.+.|+++.++....+||+++..|.|.|..+.++.....+.++
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~  162 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID  162 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence            34444444579999999999999999977778888999999999999998899999999999999999999888877744


Q ss_pred             --CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcE
Q 021925           94 --SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIV  170 (305)
Q Consensus        94 --~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i  170 (305)
                        ..++-+.|++..+.++....    ..+.+.+|+....     .+.....+.|..+...++|+|.+ .+|++.+.|..|
T Consensus       163 sgqsvRll~ys~skr~lL~~as----d~G~VtlwDv~g~-----sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki  233 (673)
T KOG4378|consen  163 SGQSVRLLRYSPSKRFLLSIAS----DKGAVTLWDVQGM-----SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI  233 (673)
T ss_pred             CCCeEEEeecccccceeeEeec----cCCeEEEEeccCC-----CcccchhhhccCCcCcceecCCccceEEEecccceE
Confidence              55678999998876665432    2667788887532     23344557899999999999976 577889999999


Q ss_pred             EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eEEEEEe-eCCCeeEEEecCCC
Q 021925          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAVTMSPLL  244 (305)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~  244 (305)
                      .+||++..+....+.    ...+.+.++|.++|.+|+.|+..|.|..||++.. .++.... |...|++++|-|.-
T Consensus       234 ~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  234 NIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EEeecccccccceee----ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            999999888777775    6788999999999999999999999999999965 5666665 88889999998874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.6e-23  Score=175.75  Aligned_cols=240  Identities=16%  Similarity=0.237  Sum_probs=184.8

Q ss_pred             ccceEEEEEcCCCCE----EEEeeCCCceEEEEcCC---C---eeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEE
Q 021925           10 ERPLTYLKYNKDGDL----LFSCAKDHTPTVWFADN---G---ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKL   78 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~----l~s~~~dg~v~iw~~~~---~---~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~v   78 (305)
                      ...-+.++|.+.|..    ||.|..||.|.+||...   +   ..+.+...|.+.|..+.|++. ++.||+|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            456788999997765    88899999999999764   2   245667789999999999995 459999999999999


Q ss_pred             EecCCCCeeEEE---eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC--CeeEEE
Q 021925           79 WNVETGAQLFTF---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--RINRAV  153 (305)
Q Consensus        79 wd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~  153 (305)
                      ||+.+.+.....   ...+.|.+++|+..-..++++..    -.+...+|+++..      +++..+..+.+  .+..+.
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s----~sg~~~iWDlr~~------~pii~ls~~~~~~~~S~l~  213 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGS----PSGRAVIWDLRKK------KPIIKLSDTPGRMHCSVLA  213 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccC----CCCCceeccccCC------CcccccccCCCccceeeee
Confidence            999876554444   26778999999987655444432    1445667777643      34444444433  467899


Q ss_pred             EcCCC-CEEEEeeCC---CcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceEEE
Q 021925          154 WGPLN-RTIISAGED---AIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIK  227 (305)
Q Consensus       154 ~~~~~-~~l~~~~~d---g~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~  227 (305)
                      |+|+. ..+++++.|   -.|.+||+|. ..+++.++   +|...|.++.|++.+ ++|++++.|++|.+|+.++++.+.
T Consensus       214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~  290 (1049)
T KOG0307|consen  214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG  290 (1049)
T ss_pred             eCCCCceeeeeecCCCCCceeEeecccccCCchhhhc---ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence            99987 456666654   3799999986 34566665   899999999999965 889999999999999999999999


Q ss_pred             EEe-eCCCeeEEEecCCCC-cEEEeeCCcEEEEEEee
Q 021925          228 TYV-TERPVNAVTMSPLLD-HVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       228 ~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~  262 (305)
                      .+. .+..+..+.|.|... .+++++-++.+-+..+.
T Consensus       291 ~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  291 ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             ecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence            998 677899999999988 56667777765544444

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=6.4e-22  Score=152.63  Aligned_cols=232  Identities=18%  Similarity=0.291  Sum_probs=168.2

Q ss_pred             CCCEEEEeeCCCceEEEEcCCCe---ee------------------EEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEE
Q 021925           21 DGDLLFSCAKDHTPTVWFADNGE---RL------------------GTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKL   78 (305)
Q Consensus        21 ~~~~l~s~~~dg~v~iw~~~~~~---~~------------------~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~v   78 (305)
                      .|+++|.|+.|..|.|||+.=..   +.                  ....+|++.|..+.|+.+ .+.|+|||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            36799999999999999875110   00                  112368999999999874 468899999999999


Q ss_pred             EecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        79 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      ||+.++++..++. +...|.++.|+|....++..+.    .++.+.+.+.+...      .....-.-.+.|..++|.|.
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs----~D~~V~l~D~R~~~------~s~~~wk~~g~VEkv~w~~~  340 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGS----YDGTVALKDCRDPS------NSGKEWKFDGEVEKVAWDPH  340 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEecc----ccceEEeeeccCcc------ccCceEEeccceEEEEecCC
Confidence            9999999999998 8899999999997654444331    24445555544211      11111223567889999997


Q ss_pred             C-CEEEEeeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceEEEEEe---e
Q 021925          158 N-RTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYV---T  231 (305)
Q Consensus       158 ~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---~  231 (305)
                      . ..++++..||.|+-+|+|.. +++.++.   .|..+|.++++++.- .++++++.|+.|++|++..-.+.....   .
T Consensus       341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~---AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~  417 (463)
T KOG0270|consen  341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLK---AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK  417 (463)
T ss_pred             CceeEEEecCCceEEeeecCCCCCceeEEE---eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence            7 46777888999999999975 8888887   899999999998843 468899999999999987544432222   1


Q ss_pred             CCCeeEEEecCCCCcEEE-eeCCcEEEEEEeehhhhhhhh
Q 021925          232 ERPVNAVTMSPLLDHVCI-GEPQTIKFMLLVYLFVLFLDI  270 (305)
Q Consensus       232 ~~~v~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~  270 (305)
                      -+...|+++.|+-..+++ |+..+ .    +++|+.....
T Consensus       418 ~~rl~c~~~~~~~a~~la~GG~k~-~----~~vwd~~~~~  452 (463)
T KOG0270|consen  418 LGRLHCFALDPDVAFTLAFGGEKA-V----LRVWDIFTNS  452 (463)
T ss_pred             ccceeecccCCCcceEEEecCccc-e----EEEeecccCh
Confidence            233778889998876554 55444 3    5666654433

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.9e-22  Score=165.37  Aligned_cols=241  Identities=15%  Similarity=0.201  Sum_probs=177.5

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe----eeEEecC---CCcceEEEEEcC-CCcEEEEEeCCCcEEEEecC
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRG---HNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~----~~~~~~~---~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~   82 (305)
                      ....++..+++-..|+.++. ..++|+.+....    +...+..   -...+..+.|.. +.++|++++..|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            45667788888888888774 477888765432    1112111   112456778876 56799999999999999998


Q ss_pred             C---CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC-
Q 021925           83 T---GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-  157 (305)
Q Consensus        83 ~---~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  157 (305)
                      .   .+.+..+. |...+.++.|++-...+++.+.    .++.++.|++...      +....+.+....|..++|+|. 
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS----QDg~vK~~DlR~~------~S~~t~~~nSESiRDV~fsp~~  188 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGS----QDGTVKCWDLRSK------KSKSTFRSNSESIRDVKFSPGY  188 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecC----CCceEEEEeeecc------cccccccccchhhhceeeccCC
Confidence            6   34444554 8889999999996655544432    3778888998754      344455667788999999995 


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eEEEEEeeCCC
Q 021925          158 NRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTYVTERP  234 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~  234 (305)
                      +.+++++.+.|.+++||++... +...+.   +|.++|.++.|+|++.+||||+.|+.|+|||..+.  +++.++....+
T Consensus       189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~---AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiap  265 (839)
T KOG0269|consen  189 GNKFASIHDSGYLQLWDLRQPDRCEKKLT---AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAP  265 (839)
T ss_pred             CceEEEecCCceEEEeeccCchhHHHHhh---cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecce
Confidence            4789999999999999998643 334444   89999999999999999999999999999999865  45667778899


Q ss_pred             eeEEEecCCCCc-EEEeeCCcEEEEEEeehhhhhh
Q 021925          235 VNAVTMSPLLDH-VCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       235 v~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      |.++.|-|..++ |++++.   .....+++|++.-
T Consensus       266 v~rVkWRP~~~~hLAtcsm---v~dtsV~VWDvrR  297 (839)
T KOG0269|consen  266 VGRVKWRPARSYHLATCSM---VVDTSVHVWDVRR  297 (839)
T ss_pred             eeeeeeccCccchhhhhhc---cccceEEEEeecc
Confidence            999999999886 444421   1122366666543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=5.7e-21  Score=145.94  Aligned_cols=259  Identities=16%  Similarity=0.216  Sum_probs=183.3

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcC--------C--------CeeeEEecCCCcceEEEEEcCCCcEEE
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--------N--------GERLGTYRGHNGAVWCCDVSRDSMTLI   68 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~--------~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~   68 (305)
                      .|..|...|+++.|+|+|+.||+|+.+|.|.+|...        +        -...+.+.+|...|..++|+|++.+++
T Consensus        60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~  139 (434)
T KOG1009|consen   60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV  139 (434)
T ss_pred             cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence            477899999999999999999999999999999655        2        123456778999999999999999999


Q ss_pred             EEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcc-eee-----eeeEEEEE----eecccCCCCCc
Q 021925           69 TGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPF-MEL-----NSAIHVKR----IARDPADQGGE  137 (305)
Q Consensus        69 s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~----~~~~~~~~~~~  137 (305)
                      +++.|..+++||+..|+...... +...+..++|.|-+.+++.-+... ...     ...+....    .........++
T Consensus       140 s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~  219 (434)
T KOG1009|consen  140 SGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK  219 (434)
T ss_pred             eeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence            99999999999999999988887 888999999999888877655432 100     00011000    01111112222


Q ss_pred             eEEEEecc--CCCeeEEEEcCCCCEEEEeeC----CCc-----EEEEeCCC-CcEeeeeccccCCccceEEEEEcC----
Q 021925          138 SVLILKGP--QGRINRAVWGPLNRTIISAGE----DAI-----VRIWDTET-GKLLKESDKETGHKKTITSLAKAA----  201 (305)
Q Consensus       138 ~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~----dg~-----i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~----  201 (305)
                      ..+.+...  ..-...++|+|+|..+++...    .+.     .++++-.. .++...+.   ....+...+.++|    
T Consensus       220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp---~~~k~~lavr~~pVy~e  296 (434)
T KOG1009|consen  220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP---SPKKPALAVRFSPVYYE  296 (434)
T ss_pred             eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC---CCCcceEEEEeeeeEEE
Confidence            22222211  223456889999998887542    222     35555432 23333333   3344444555544    


Q ss_pred             --------------CCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925          202 --------------DGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       202 --------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                                    -+-.+|.++ ...|++||.++..++....  |-.++++++|+++|..+++.+.||.-.++.+.-|.
T Consensus       297 lrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  297 LRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             eccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence                          122345555 5579999999999988776  88899999999999999999999999888888887


Q ss_pred             hh
Q 021925          266 LF  267 (305)
Q Consensus       266 ~~  267 (305)
                      +.
T Consensus       376 lg  377 (434)
T KOG1009|consen  376 LG  377 (434)
T ss_pred             cc
Confidence            65

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=5.7e-22  Score=152.13  Aligned_cols=199  Identities=21%  Similarity=0.148  Sum_probs=153.4

Q ss_pred             EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe--
Q 021925           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN--   91 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--   91 (305)
                      .+++|+.+|..|++|+.||.+|||+.++...+.....|.+.|.++.|+|||+.|++.+.| ..+||+.+++..+....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            689999999999999999999999998888888888899999999999999999999999 89999999996665554  


Q ss_pred             -eCCCceEEEEecCC---ceEEEeC--CcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           92 -FDSPARSVDFAVGD---KLAVITT--DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        92 -~~~~v~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                       .+.....+.|+.++   .+.+.+.  .........+..|.-.      ..-...........|.+++.+++|++++.|+
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~------~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT  300 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS------NFLRLRKKIKRFKSISSLAVSDDGKFLALGT  300 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc------cccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence             33445667777766   3333322  2111111222222221      1111122223345799999999999999999


Q ss_pred             CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      .||.|-|++..+-+.++-.+.  .|...|+.+.|+|+.+++++.+.|.+..+..+.
T Consensus       301 ~dGsVai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  301 MDGSVAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             cCCcEEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            999999999988877776653  789999999999999999999999988887765

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=1.2e-21  Score=157.98  Aligned_cols=134  Identities=18%  Similarity=0.208  Sum_probs=108.5

Q ss_pred             eeeEEEEEeeccc-CCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEE
Q 021925          119 NSAIHVKRIARDP-ADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS  196 (305)
Q Consensus       119 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  196 (305)
                      ++.+++|.+.... ......+...+..|...|+++.|+|-. +.|++++.|-+|++||+++++....+.   +|...|..
T Consensus       649 dg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~---gHtdqIf~  725 (1012)
T KOG1445|consen  649 DGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV---GHTDQIFG  725 (1012)
T ss_pred             CceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec---cCcCceeE
Confidence            4556777776543 234456778899999999999999964 688899999999999999998888887   89999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCce-EEEEEe--eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          197 LAKAADGSHFLTGSLDKSAKLWDARTLE-LIKTYV--TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       197 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ++|+|+|+.+++.+.||+|++|+.++++ ++++-.  .+.+-..+.|.-+|+++++.+-+..
T Consensus       726 ~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~  787 (1012)
T KOG1445|consen  726 IAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS  787 (1012)
T ss_pred             EEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence            9999999999999999999999998764 333332  2334467889999999888776654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=7.6e-22  Score=156.60  Aligned_cols=209  Identities=18%  Similarity=0.296  Sum_probs=171.0

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC--------CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcE
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTA   76 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v   76 (305)
                      ++..|.+.|+++.|+|....|++++.||.+++|+++.        -+++.++.+|.++|.|++..+++..+++|+-||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            5788999999999999999999999999999999832        35788999999999999999999999999999999


Q ss_pred             EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      +.|++....-..                ..                          .........+.||.+.++.+++|+
T Consensus       369 ~~w~~p~n~dp~----------------ds--------------------------~dp~vl~~~l~Ghtdavw~l~~s~  406 (577)
T KOG0642|consen  369 RCWNLPPNQDPD----------------DS--------------------------YDPSVLSGTLLGHTDAVWLLALSS  406 (577)
T ss_pred             eeeccCCCCCcc----------------cc--------------------------cCcchhccceeccccceeeeeecc
Confidence            999876221100                00                          001123345789999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCcEeeeecc-------------------------------------------------c
Q 021925          157 LNRTIISAGEDAIVRIWDTETGKLLKESDK-------------------------------------------------E  187 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------------------~  187 (305)
                      ....|++++.||++++|+.....+ ..+..                                                 .
T Consensus       407 ~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~  485 (577)
T KOG0642|consen  407 TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG  485 (577)
T ss_pred             cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc
Confidence            999999999999999999875544 11100                                                 0


Q ss_pred             cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       188 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      ......++.+.++|.+.+.+++..|+.|+++|..+++++.... |...++++++.|+|.+|++++.++.+
T Consensus       486 ~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv  555 (577)
T KOG0642|consen  486 PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSV  555 (577)
T ss_pred             ccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCcee
Confidence            0112456778889999999999999999999999999998877 88899999999999999999999873

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.7e-21  Score=150.03  Aligned_cols=208  Identities=13%  Similarity=0.194  Sum_probs=178.5

Q ss_pred             ccc-cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925            8 GHE-RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus         8 ~h~-~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      |+. ..+.....++++++|+..+..|.|.+-...+++.+.+++ ..+.|..+.|+.+++.|++++.+|.|.+||+++..+
T Consensus       300 g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~  378 (514)
T KOG2055|consen  300 GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC  378 (514)
T ss_pred             CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence            443 357788899999999999999999999999999999988 678999999999999999999999999999999999


Q ss_pred             eEEEeeCCCce--EEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           87 LFTFNFDSPAR--SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        87 ~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      +..+...+.+.  +++.++++.+++++++     .+.+.+++..........+++..+..-...|++++|+|+.+.||.+
T Consensus       379 ~~rf~D~G~v~gts~~~S~ng~ylA~GS~-----~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia  453 (514)
T KOG2055|consen  379 LHRFVDDGSVHGTSLCISLNGSYLATGSD-----SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIA  453 (514)
T ss_pred             EEEEeecCccceeeeeecCCCceEEeccC-----cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence            99998777665  5666789999999987     4555666655555556667788888888899999999999999988


Q ss_pred             eC--CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          165 GE--DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       165 ~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      +.  +..+++-.+.+......++.....-+.|+||+|+|.+.+||.|..+|++.+|.+.
T Consensus       454 S~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  454 SRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            75  6789999998888877777665666789999999999999999999999999874

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=8.6e-21  Score=139.08  Aligned_cols=238  Identities=18%  Similarity=0.266  Sum_probs=172.8

Q ss_pred             EecccccceEEEEEcC-CCCEEEEeeCC-------CceEEEEcCCC---------eeeEEec-CCCcceEEEEEcCCCcE
Q 021925            5 LMKGHERPLTYLKYNK-DGDLLFSCAKD-------HTPTVWFADNG---------ERLGTYR-GHNGAVWCCDVSRDSMT   66 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~-~~~~l~s~~~d-------g~v~iw~~~~~---------~~~~~~~-~~~~~v~~i~~~~~~~~   66 (305)
                      +|..|.+.|..++-+| +.+.|+|+..+       ..+.||.++..         +.+..+. .+-+.|.|+.|.|++..
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            4677899999999999 56677776543       24679988643         2233333 35568999999999999


Q ss_pred             EEEEeCCCcEEEEecCCCCe-eEEEe------eCCCceEEEEec--CCceEEEeCCcceeeeeeEEEEEeecccCCCCCc
Q 021925           67 LITGSADQTAKLWNVETGAQ-LFTFN------FDSPARSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQGGE  137 (305)
Q Consensus        67 l~s~~~dg~v~vwd~~~~~~-~~~~~------~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (305)
                      +++-. |..|.+|+++++.. +..+.      +.....+-+|+|  ++..+++..+      ..+..|+.+...     +
T Consensus       138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d------~tl~~~D~RT~~-----~  205 (370)
T KOG1007|consen  138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD------STLQFWDLRTMK-----K  205 (370)
T ss_pred             eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC------CcEEEEEccchh-----h
Confidence            88765 78999999987765 33333      234456677888  6777777664      445555554321     2


Q ss_pred             eEEEEeccCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCe
Q 021925          138 SVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKS  214 (305)
Q Consensus       138 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~  214 (305)
                      ....-..|...+..+.|+|+.+ +|++|+.||.|++||.+.. .++..+.   +|...|.++.|+|. .+++++|+.|..
T Consensus       206 ~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~---~HsHWvW~VRfn~~hdqLiLs~~SDs~  282 (370)
T KOG1007|consen  206 NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP---GHSHWVWAVRFNPEHDQLILSGGSDSA  282 (370)
T ss_pred             hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC---CCceEEEEEEecCccceEEEecCCCce
Confidence            2233456778899999999875 6789999999999999864 4566665   89999999999994 467889999999


Q ss_pred             EEEEEcCCc------------------------e-----EEEEEe-eCCCeeEEEecCCCCcEEEe-eCCcEEE
Q 021925          215 AKLWDARTL------------------------E-----LIKTYV-TERPVNAVTMSPLLDHVCIG-EPQTIKF  257 (305)
Q Consensus       215 i~iwd~~~~------------------------~-----~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~~~~  257 (305)
                      |.+|...+-                        +     .+.++. |+..|.+++|+.-.+++++. +.||..+
T Consensus       283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence            999965320                        1     123444 78889999999999998776 5566543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=2.1e-21  Score=144.55  Aligned_cols=242  Identities=15%  Similarity=0.180  Sum_probs=182.5

Q ss_pred             cccccceEEEEEcCC----CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEEEec
Q 021925            7 KGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNV   81 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~   81 (305)
                      ..|.+....++|+-+    ..++|+|+.-|.|+|.|+.+++....+.+|...|+.+.++|+ .++++++|.|..|++|++
T Consensus        86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI  165 (385)
T KOG1034|consen   86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI  165 (385)
T ss_pred             CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence            357888888999763    347889999999999999999999999999999999999995 478999999999999999


Q ss_pred             CCCCeeEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCC------------C-------c-
Q 021925           82 ETGAQLFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG------------G-------E-  137 (305)
Q Consensus        82 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-------~-  137 (305)
                      ++..++..+.    |...|.++.|+.++..++.++-     +..+.+|.+........            .       . 
T Consensus       166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm-----Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~  240 (385)
T KOG1034|consen  166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM-----DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH  240 (385)
T ss_pred             cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC-----cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence            9999999987    8889999999999998888764     66777777752211000            0       0 


Q ss_pred             -e-EEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC-CCCcEeeeecc----------ccCCccceE--EEEEcCC
Q 021925          138 -S-VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT-ETGKLLKESDK----------ETGHKKTIT--SLAKAAD  202 (305)
Q Consensus       138 -~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~----------~~~~~~~v~--~~~~~~~  202 (305)
                       + ...-.-|...|.|+.|-  |+++++-+-++.|..|-. +-++.+.....          ..-....+.  ..+|.|-
T Consensus       241 fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~  318 (385)
T KOG1034|consen  241 FPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW  318 (385)
T ss_pred             cccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence             0 01223466677777776  678888888899999987 22222111110          001222333  4456777


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceEEE--EEe---eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          203 GSHFLTGSLDKSAKLWDARTLELIK--TYV---TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       203 ~~~l~~~~~dg~i~iwd~~~~~~~~--~~~---~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      +++||.|...|.|++||++..++..  ++.   ....|...+|+.|+..|+...+++.
T Consensus       319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~  376 (385)
T KOG1034|consen  319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGT  376 (385)
T ss_pred             HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence            8899999999999999999876632  222   4567999999999999998888876

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=1.9e-21  Score=152.36  Aligned_cols=238  Identities=14%  Similarity=0.206  Sum_probs=174.3

Q ss_pred             eEEEEEcCCCC-EEEEeeCCCceEEEEcCCC--eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925           13 LTYLKYNKDGD-LLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (305)
Q Consensus        13 v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~   89 (305)
                      +.++.|+.... .+++.+.|..+++|.-...  +....-....+.-.|++......++++|+..++|+|||++...+...
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~  116 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF  116 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh
Confidence            88999987653 2334456888999963321  22111111222345555555668999999999999999995555555


Q ss_pred             Ee-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-CCCeeEEEEcCCCCE-EEEeeC
Q 021925           90 FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRT-IISAGE  166 (305)
Q Consensus        90 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-l~~~~~  166 (305)
                      ++ +...|.++.++..+.+++..+.+     +.+.+..+...      .....+... ...+.-+.++|..+. |.+++.
T Consensus       117 lkdh~stvt~v~YN~~DeyiAsvs~g-----Gdiiih~~~t~------~~tt~f~~~sgqsvRll~ys~skr~lL~~asd  185 (673)
T KOG4378|consen  117 LKDHQSTVTYVDYNNTDEYIASVSDG-----GDIIIHGTKTK------QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD  185 (673)
T ss_pred             ccCCcceeEEEEecCCcceeEEeccC-----CcEEEEecccC------ccccceecCCCCeEEEeecccccceeeEeecc
Confidence            55 88999999999999999988763     33333333221      112222222 334557899998865 557889


Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD  245 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  245 (305)
                      +|.|.+||.....+.....  ..|..+...++|+|. ..+|++.+.|..|.+||.+..+....+....|...++|+++|.
T Consensus       186 ~G~VtlwDv~g~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~  263 (673)
T KOG4378|consen  186 KGAVTLWDVQGMSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGT  263 (673)
T ss_pred             CCeEEEEeccCCCcccchh--hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCce
Confidence            9999999998877766654  369999999999994 5578899999999999999998888888899999999999999


Q ss_pred             cEEEeeCCcEEEEEEeeh
Q 021925          246 HVCIGEPQTIKFMLLVYL  263 (305)
Q Consensus       246 ~l~~~~~~~~~~~~~~~~  263 (305)
                      +|++|+..|..+.+.++.
T Consensus       264 ~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  264 YLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             EEEeecCCceEEEEeccc
Confidence            999999999876666553

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=8.8e-22  Score=146.54  Aligned_cols=210  Identities=18%  Similarity=0.295  Sum_probs=146.6

Q ss_pred             EecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCeeeEEec---CCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925            5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYR---GHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      .+.||...|+.+.++|+. +++++++.|.+|++|++++..++..+-   +|.+.|.++.|+++|.+|++++.|.+|++|+
T Consensus       130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~  209 (385)
T KOG1034|consen  130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWR  209 (385)
T ss_pred             ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEe
Confidence            367999999999999954 789999999999999999999988874   6999999999999999999999999999999


Q ss_pred             cCCCCeeEEEe-----------------------------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecc-
Q 021925           81 VETGAQLFTFN-----------------------------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD-  130 (305)
Q Consensus        81 ~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  130 (305)
                      +...+....++                             |...|.|+.|-  +.+++.-+-     .+.+..|..-.. 
T Consensus       210 l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc-----enaI~~w~pgkl~  282 (385)
T KOG1034|consen  210 LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC-----ENAIVCWKPGKLE  282 (385)
T ss_pred             cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc-----CceEEEEecchhh
Confidence            97432211111                             12222222222  122222211     223333333111 


Q ss_pred             -------cCCCCCceEEEEeccCCCeeEEE--EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec-cccCCccceEEEEEc
Q 021925          131 -------PADQGGESVLILKGPQGRINRAV--WGPLNRTIISAGEDAIVRIWDTETGKLLKESD-KETGHKKTITSLAKA  200 (305)
Q Consensus       131 -------~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~  200 (305)
                             +..........+.-....|.-+.  |.|-++.||.|.+.|.|.+||++...+...-. ........|...+|+
T Consensus       283 e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS  362 (385)
T KOG1034|consen  283 ESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFS  362 (385)
T ss_pred             hhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeec
Confidence                   11111223344455555666655  45667999999999999999999876642211 111235679999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcC
Q 021925          201 ADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       201 ~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      .|+.+|+..+.|++|.-||-.
T Consensus       363 ~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  363 RDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ccCcEEEEEeCCCcEEEEEee
Confidence            999999999999999999853

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.88  E-value=2.9e-21  Score=152.73  Aligned_cols=210  Identities=20%  Similarity=0.274  Sum_probs=164.1

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE-EeeCCCceEEEE
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDF  101 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~v~~~~~  101 (305)
                      ..++.++.||.+.|-+ ..++..+.+.+|.+.+.+-.|+|||.-|++++.||.|++|.- +|-...+ .+...+|+|++|
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEE
Confidence            4678889999999987 567777889999999999999999999999999999999984 4433333 347889999999


Q ss_pred             ecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe
Q 021925          102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL  181 (305)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  181 (305)
                      .|+...++.+..+..      .+..+      .....+...+.|++-|.++.|+|..+.+++|++|-..++||-. |+.+
T Consensus       154 ~p~S~~vl~c~g~h~------~IKpL------~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~L  220 (737)
T KOG1524|consen  154 APNSNSIVFCQGGHI------SIKPL------AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANL  220 (737)
T ss_pred             CCCCCceEEecCCeE------EEeec------ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Cccc
Confidence            998877776654322      22222      2234566788999999999999999999999999999999975 5555


Q ss_pred             eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEe
Q 021925          182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLV  261 (305)
Q Consensus       182 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~  261 (305)
                      ..-.   .|+.+|++++|.|+ +.++.++. +++++=          -...+.|..++||+||..+++|++.|..++..+
T Consensus       221 f~S~---~~ey~ITSva~npd-~~~~v~S~-nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  221 FTSA---AEEYAITSVAFNPE-KDYLLWSY-NTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA  285 (737)
T ss_pred             ccCC---hhccceeeeeeccc-cceeeeee-eeeeec----------CCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence            5554   69999999999999 56666653 234411          113456889999999999999999998766655


Q ss_pred             e
Q 021925          262 Y  262 (305)
Q Consensus       262 ~  262 (305)
                      .
T Consensus       286 i  286 (737)
T KOG1524|consen  286 I  286 (737)
T ss_pred             e
Confidence            4

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=5.7e-21  Score=145.58  Aligned_cols=155  Identities=25%  Similarity=0.352  Sum_probs=132.8

Q ss_pred             EecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEE
Q 021925           47 TYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (305)
Q Consensus        47 ~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (305)
                      .+.+|.++|..++|+| +...|||||.|.+|.||++..+.....                                    
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------------------------  119 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------------------------  119 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------------------------------
Confidence            4568999999999999 677899999999999999876544322                                    


Q ss_pred             EeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC
Q 021925          126 RIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS  204 (305)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  204 (305)
                               ..+++..+.+|...|--++|+|.- +.|++++.|..|.+||+.+++.+-.+.    |...|.++.|+.||.
T Consensus       120 ---------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~dGs  186 (472)
T KOG0303|consen  120 ---------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFNRDGS  186 (472)
T ss_pred             ---------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEEEeccCCc
Confidence                     126778899999999999999976 678899999999999999999888875    999999999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCceEEEEEe-e-CCCeeEEEecCCCCcEEEe
Q 021925          205 HFLTGSLDKSAKLWDARTLELIKTYV-T-ERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       205 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~  250 (305)
                      .|++.+.|..|+|||.++++.+..-. | +..-..+.|-.+|..+.+|
T Consensus       187 ~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  187 LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            99999999999999999999998875 3 3345677888888855454

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.7e-21  Score=143.95  Aligned_cols=196  Identities=11%  Similarity=0.201  Sum_probs=150.4

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEEecCCCCeeEEEee----CCCc
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLWNVETGAQLFTFNF----DSPA   96 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----~~~v   96 (305)
                      ..+|++...|+|++||..+++.+..++++...+..+.|..  ....+.+|+.||+|++||+++......+..    +.+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4688899999999999999999999999999999999987  456889999999999999998887766662    2345


Q ss_pred             eEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeC
Q 021925           97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDT  175 (305)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~  175 (305)
                      .+++....+.++++++. .......+.+|+++....    ........|...|++++|+|+. ++|++|+.||-|.++|+
T Consensus       121 ~~ld~nck~~ii~~GtE-~~~s~A~v~lwDvR~~qq----~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTE-LTRSDASVVLWDVRSEQQ----LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             eEeeccCcCCeEEeccc-cccCceEEEEEEeccccc----hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            66666666777776643 334455667777765432    1334456899999999999976 78999999999999999


Q ss_pred             CCCcEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCc
Q 021925          176 ETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTL  223 (305)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~  223 (305)
                      +....--.+...-.+...|.++.|..++ +.|.+-+..++..+|+++.+
T Consensus       196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence            8643222222122577889999998876 35888888999999988753

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=1.3e-20  Score=146.12  Aligned_cols=249  Identities=14%  Similarity=0.181  Sum_probs=189.1

Q ss_pred             eEecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCee--eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925            4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      +.+.+|..+|.+|.|+| +-..+++.+.||+|++=|++++..  +.++......+.++.|+.+...++.+..=|.+.+||
T Consensus       228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD  307 (498)
T KOG4328|consen  228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVID  307 (498)
T ss_pred             EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEE
Confidence            45789999999999999 557899999999999999987643  333433556788899998887888888878999999


Q ss_pred             cCCCCe-eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           81 VETGAQ-LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        81 ~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      ++++.. ...+. +...|.+++++|....+++..    ..+....+|+++.......  +......|...|.+..|||.+
T Consensus       308 ~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~----s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~  381 (498)
T KOG4328|consen  308 LRTDGSEYENLRLHKKKITSVALNPVCPWFLATA----SLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSG  381 (498)
T ss_pred             eecCCccchhhhhhhcccceeecCCCCchheeec----ccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCC
Confidence            998765 33333 667999999999766555443    2467788898876543322  456667899999999999999


Q ss_pred             CEEEEeeCCCcEEEEeCC----CCcEeeeeccccCCcc--ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--
Q 021925          159 RTIISAGEDAIVRIWDTE----TGKLLKESDKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--  230 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--  230 (305)
                      ..|++.+.|..|+|||..    .-.+...+.....+..  ......|.|+..++++|..-..|-|+|-..++.+.++.  
T Consensus       382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P  461 (498)
T KOG4328|consen  382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP  461 (498)
T ss_pred             CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence            889999999999999983    3344444432111111  23456799999999999999999999999999888876  


Q ss_pred             eCCCeeE-EEecCCCCcEEEeeCCcEEEE
Q 021925          231 TERPVNA-VTMSPLLDHVCIGEPQTIKFM  258 (305)
Q Consensus       231 ~~~~v~~-~~~~~~~~~l~~~~~~~~~~~  258 (305)
                      ....|.+ ..|+|-+..+++|+..++.++
T Consensus       462 ~~~tI~~vn~~HP~~~~~~aG~~s~Gki~  490 (498)
T KOG4328|consen  462 ESSTIPSVNEFHPMRDTLAAGGNSSGKIY  490 (498)
T ss_pred             cccccccceeecccccceeccCCccceEE
Confidence            2334544 479999998888887777644

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=2.5e-21  Score=147.85  Aligned_cols=208  Identities=20%  Similarity=0.302  Sum_probs=158.3

Q ss_pred             Eeccc-ccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCC---------eeeEEecCCCcceEEEEEcCCCcEEEEEeCC
Q 021925            5 LMKGH-ERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNG---------ERLGTYRGHNGAVWCCDVSRDSMTLITGSAD   73 (305)
Q Consensus         5 ~l~~h-~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d   73 (305)
                      .+.-| ..+|..+.|.++.. .+|||+.|..|+||.+..+         +.+..+..|...|+++.|+|+|..|+||+.+
T Consensus         7 ei~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~   86 (434)
T KOG1009|consen    7 EISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG   86 (434)
T ss_pred             EEEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence            34456 45799999999776 9999999999999977543         2345667899999999999999999999999


Q ss_pred             CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEE
Q 021925           74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (305)
Q Consensus        74 g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (305)
                      |.|.+|....-...   .            ...                     ......+.......+.+|...|..++
T Consensus        87 g~v~lWk~~~~~~~---~------------~d~---------------------e~~~~ke~w~v~k~lr~h~~diydL~  130 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIF---D------------ADT---------------------EADLNKEKWVVKKVLRGHRDDIYDLA  130 (434)
T ss_pred             ceEEEEEecCcCCc---c------------ccc---------------------hhhhCccceEEEEEecccccchhhhh
Confidence            99999976531100   0            000                     00000011233455678999999999


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---
Q 021925          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---  230 (305)
Q Consensus       154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---  230 (305)
                      |+|+++++++++.|..+++||+..|+....+.   .|...+..++|.|-++++++-+.|...+.+++...+.++...   
T Consensus       131 Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~---dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~  207 (434)
T KOG1009|consen  131 WSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD---DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI  207 (434)
T ss_pred             ccCCCceeeeeeccceEEEEEeccceeEeecc---ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE
Confidence            99999999999999999999999999998887   799999999999999999999999877777765433222111   


Q ss_pred             -----------------eC----CCeeEEEecCCCCcEEEee
Q 021925          231 -----------------TE----RPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       231 -----------------~~----~~v~~~~~~~~~~~l~~~~  251 (305)
                                       |.    .-...++|+|+|.++++..
T Consensus       208 m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  208 MPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             eeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence                             11    1245678999999998753

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=5.8e-20  Score=144.31  Aligned_cols=239  Identities=14%  Similarity=0.176  Sum_probs=184.0

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ++.++|.+....++.+|+.++++|++.|+.+++|+  ..++..+.. ..+++.|+.|+|.| .++.|...|...+.|.++
T Consensus       362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~  437 (626)
T KOG2106|consen  362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTET  437 (626)
T ss_pred             EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEeccc
Confidence            35679999999999999999999999999999999  445444433 46789999999999 999999999999999999


Q ss_pred             CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      ...+.......++.+++|+|+|.++++++.     ++.+.++.+....    .+....-+.+..+|+.+.|++|++++.+
T Consensus       438 ~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~-----d~~iyiy~Vs~~g----~~y~r~~k~~gs~ithLDwS~Ds~~~~~  508 (626)
T KOG2106|consen  438 QDLVTIHTDNEQLSVVRYSPDGAFLAVGSH-----DNHIYIYRVSANG----RKYSRVGKCSGSPITHLDWSSDSQFLVS  508 (626)
T ss_pred             ceeEEEEecCCceEEEEEcCCCCEEEEecC-----CCeEEEEEECCCC----cEEEEeeeecCceeEEeeecCCCceEEe
Confidence            877777778899999999999999999987     4555555554321    1222333344488999999999999999


Q ss_pred             eeCCCcEEEEeCCCCcEeeeecc---------------ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE--
Q 021925          164 AGEDAIVRIWDTETGKLLKESDK---------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--  226 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--  226 (305)
                      -+.|-.|..|....-+.+...+.               ...+...++.++-+.+++++|+|...|+|++|...--++.  
T Consensus       509 ~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~  588 (626)
T KOG2106|consen  509 NSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAP  588 (626)
T ss_pred             ccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccc
Confidence            99999999995433222221110               1134556677777888899999999999999987644333  


Q ss_pred             -EEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          227 -KTYV-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       227 -~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                       .++. |.+-|.+++|.-+...+++.+.|..
T Consensus       589 ~he~~ghs~~vt~V~Fl~~d~~li~tg~D~S  619 (626)
T KOG2106|consen  589 SHEYGGHSSHVTNVAFLCKDSHLISTGKDTS  619 (626)
T ss_pred             ceeeccccceeEEEEEeeCCceEEecCCCce
Confidence             3333 7888999999988888877775554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=4.2e-20  Score=147.91  Aligned_cols=224  Identities=20%  Similarity=0.257  Sum_probs=170.4

Q ss_pred             eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCc--eEEEeCCcceeeeeeE
Q 021925           45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK--LAVITTDPFMELNSAI  122 (305)
Q Consensus        45 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~  122 (305)
                      -..+.+|++.|.+|...|.|..|++|+.||+|+||.+.++.++..+...+.|.|++|+|.+.  +++++.+....+...+
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            34567999999999999999999999999999999999999999999999999999999765  3444443332222211


Q ss_pred             EEEEeec-------------------------ccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC---CcEEEEe
Q 021925          123 HVKRIAR-------------------------DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED---AIVRIWD  174 (305)
Q Consensus       123 ~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd  174 (305)
                      ....+..                         ....+...-+...-.|...|.++.|+..|.||++...+   ..|.|.+
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ  552 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ  552 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence            1100000                         00001112234556788999999999999999987764   4789999


Q ss_pred             CCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCC
Q 021925          175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~  253 (305)
                      +...+....+.   ...+.|.++.|+|...+|++++ ...|++||+...+.++.+. ....|..++.+|.|..|++|+.+
T Consensus       553 LSK~~sQ~PF~---kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  553 LSKRKSQSPFR---KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             cccccccCchh---hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence            98766655554   4567899999999999988887 5579999999888877776 55678999999999999999999


Q ss_pred             cEEEEEEeehhhhhhhhhh
Q 021925          254 TIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~  272 (305)
                      +.+.|..+.+-...+..+.
T Consensus       629 ~k~~WfDldlsskPyk~lr  647 (733)
T KOG0650|consen  629 KKMCWFDLDLSSKPYKTLR  647 (733)
T ss_pred             CeeEEEEcccCcchhHHhh
Confidence            9988888776644444443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.4e-19  Score=134.41  Aligned_cols=241  Identities=16%  Similarity=0.222  Sum_probs=170.2

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET   83 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~   83 (305)
                      .+.+|..+|++++||+||+.|+|++.|..|.+||+..|.+++++. ..++|+.+.|+|.. +..++.-.+..-.+-++..
T Consensus        60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~  138 (405)
T KOG1273|consen   60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD  138 (405)
T ss_pred             hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence            578999999999999999999999999999999999999999988 78999999999933 4444444445555555543


Q ss_pred             CCeeEEEe------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC-CCeeEEEEcC
Q 021925           84 GAQLFTFN------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ-GRINRAVWGP  156 (305)
Q Consensus        84 ~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~  156 (305)
                      +.. ..+.      .+....+..|.+.|+++.+++..     +.+.+.+..      ..+.+..++-.. ..|.++.++.
T Consensus       139 ~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK-----Gkllv~~a~------t~e~vas~rits~~~IK~I~~s~  206 (405)
T KOG1273|consen  139 PKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK-----GKLLVYDAE------TLECVASFRITSVQAIKQIIVSR  206 (405)
T ss_pred             Cce-eeccCCCccccccccccccccCCCCEEEEecCc-----ceEEEEecc------hheeeeeeeechheeeeEEEEec
Confidence            221 1111      12223344688889999888763     222222222      224444444444 6788899999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCc---------EeeeeccccCCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceEE
Q 021925          157 LNRTIISAGEDAIVRIWDTETGK---------LLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELI  226 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~  226 (305)
                      .|+.|+.-+.|..|+.|+++.-.         +.+.++.. -....-.+++|+.+|.+++.++. ...++||....|.++
T Consensus       207 ~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV  285 (405)
T KOG1273|consen  207 KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV  285 (405)
T ss_pred             cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-HhhhhhhheeecCCccEEEeccccceeEEEEecCCccee
Confidence            99999999999999999987311         11111111 12234567889999999877664 567999999999999


Q ss_pred             EEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925          227 KTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       227 ~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~  259 (305)
                      +.+.  .+.....+.|+|-...+++-..+...++.
T Consensus       286 KILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~  320 (405)
T KOG1273|consen  286 KILHGTKGEELLDVNWHPVRPIIASIASGVVYIWA  320 (405)
T ss_pred             eeecCCchhheeecccccceeeeeeccCCceEEEE
Confidence            9987  23567899999998888876444443333

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.9e-19  Score=143.61  Aligned_cols=245  Identities=14%  Similarity=0.165  Sum_probs=188.3

Q ss_pred             eEeccc-ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            4 ILMKGH-ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         4 ~~l~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .++.|| .+.|.+++|++. ..|.+.+.+|.|.-||+.+++++..+....+.|++++.+|.+..++.|+.||.+..++..
T Consensus        62 ~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~  140 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG  140 (691)
T ss_pred             EEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence            345565 457999999955 478888899999999999999999999999999999999999999999999988888887


Q ss_pred             CCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCC-CceEEEEec-cCCCeeEEEEcCC
Q 021925           83 TGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG-GESVLILKG-PQGRINRAVWGPL  157 (305)
Q Consensus        83 ~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~i~~~~~~~~  157 (305)
                      .++......   ..+.+.+++|.|++..++.++.     ++.+.+|+........- ......+.. ...-|+++.+-.+
T Consensus       141 p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-----Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd  215 (691)
T KOG2048|consen  141 PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-----DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD  215 (691)
T ss_pred             CceEEEEeecccccceEEEEEecCCccEEEeccc-----CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec
Confidence            776655544   4578999999999998888775     45566666643321110 000001111 2334677777754


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE---E--eeC
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT---Y--VTE  232 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~--~~~  232 (305)
                      + .|++|..-|+|.+||...+.+++.+.   .|.+.|.+++..+++..+++++.|+.|.-+...+.+....   .  .|.
T Consensus       216 ~-tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~  291 (691)
T KOG2048|consen  216 S-TIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHA  291 (691)
T ss_pred             C-cEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCc
Confidence            4 68999999999999999999998887   7999999999999999999999999999998876644211   1  177


Q ss_pred             CCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925          233 RPVNAVTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       233 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                      ..|.+++..++  .+++|+.|....+..
T Consensus       292 hdvrs~av~~~--~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  292 HDVRSMAVIEN--ALISGGRDFTLAICS  317 (691)
T ss_pred             ccceeeeeecc--eEEecceeeEEEEcc
Confidence            78999999888  777888777654433

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.86  E-value=2.1e-19  Score=133.60  Aligned_cols=235  Identities=16%  Similarity=0.209  Sum_probs=174.3

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe---eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      +.--.++|+|.+|++|+..+|.+.....|.||.....+   ...+++.|...|++++|+|..+.|++|+.|..-+||...
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            33446799999999999999999999999999877654   678889999999999999999999999999999999984


Q ss_pred             CCC----eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           83 TGA----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        83 ~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      .+.    .+..++++...+++.|+|.++.+++++.....     .+.-......=  --..+.-+.+.+.|++++|+|++
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~i-----sVcy~E~ENdW--WVsKhikkPirStv~sldWhpnn  158 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLI-----SVCYYEQENDW--WVSKHIKKPIRSTVTSLDWHPNN  158 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEE-----EEEEEecccce--ehhhhhCCccccceeeeeccCCc
Confidence            442    33445589999999999999999998764322     11111110000  00112234567889999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCC------------------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          159 RTIISAGEDAIVRIWDTETG------------------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      -+|++|+.|+..+++..--.                  +...++   ....+.+..+.|+|+|..|+-.+.|..+.+-|.
T Consensus       159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~---~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA---SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA  235 (361)
T ss_pred             ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh---ccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence            99999999999999964211                  111111   135678999999999999999999999999998


Q ss_pred             CCce-EEEEEe-eCCCeeEEEecCCCCcEEEe
Q 021925          221 RTLE-LIKTYV-TERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       221 ~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~  250 (305)
                      .... .+.... ..-|..++.|-.+...+++|
T Consensus       236 ~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag  267 (361)
T KOG1523|consen  236 AGPSERVQSVATAQLPLLSVSWISENSVVAAG  267 (361)
T ss_pred             CCCchhccchhhccCCceeeEeecCCceeecC
Confidence            7664 333333 34667777776665444444

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.86  E-value=1e-18  Score=132.35  Aligned_cols=234  Identities=12%  Similarity=0.130  Sum_probs=176.4

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC--CcEEEEecCCCCe
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD--QTAKLWNVETGAQ   86 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d--g~v~vwd~~~~~~   86 (305)
                      ....+..+.|+.+...|..|+.||. +++..+..............|..+-|+..  ++|..+.+  +.+++.+++.+..
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCce
Confidence            3456788889999999999999975 78877655442222223345666667644  66555543  4599999999999


Q ss_pred             eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE---eccCCCeeEEEEcCCCCEEEE
Q 021925           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      +..+..+.+|.++.++.+-..++..        ..+.++++...      +.++.+   ..+...+.+++.++.+.+++.
T Consensus        81 ICe~~fpt~IL~VrmNr~RLvV~Le--------e~IyIydI~~M------klLhTI~t~~~n~~gl~AlS~n~~n~ylAy  146 (391)
T KOG2110|consen   81 ICEIFFPTSILAVRMNRKRLVVCLE--------ESIYIYDIKDM------KLLHTIETTPPNPKGLCALSPNNANCYLAY  146 (391)
T ss_pred             EEEEecCCceEEEEEccceEEEEEc--------ccEEEEecccc------eeehhhhccCCCccceEeeccCCCCceEEe
Confidence            9999999999999988765444432        33555555322      222222   234455666777777778885


Q ss_pred             ee--CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCceEEEEEe---eCCCeeE
Q 021925          164 AG--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIKTYV---TERPVNA  237 (305)
Q Consensus       164 ~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~---~~~~v~~  237 (305)
                      -+  ..|.|.+||..+-+++..+.   .|.+.+.+++|+++|.+|||+|..|+ |||+.+.+|+.+.+|+   ....|.+
T Consensus       147 p~s~t~GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IyS  223 (391)
T KOG2110|consen  147 PGSTTSGDVVLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYS  223 (391)
T ss_pred             cCCCCCceEEEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEE
Confidence            43  46999999999999998888   89999999999999999999999998 8999999999999998   3456899


Q ss_pred             EEecCCCCcEEEeeCCcEEEEEEee
Q 021925          238 VTMSPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                      ++|+|++++|++.++.+.+.+.-+.
T Consensus       224 L~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  224 LSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             EEECCCCCeEEEecCCCeEEEEEec
Confidence            9999999999999888875555443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.86  E-value=2e-20  Score=135.42  Aligned_cols=245  Identities=14%  Similarity=0.132  Sum_probs=178.3

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+|++|.+.|+++.|..+++ |.+|..-|.|++|++++.+.+..++ .|...|+.+.-.|+ ..+.+-+.|+.+.+|++.
T Consensus         8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia   85 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA   85 (323)
T ss_pred             eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence            36889999999999998875 8899999999999999999888888 57788999999987 468899999999999987


Q ss_pred             CCCeeEEEe------------------------------------------------------eCCCceEEEEe-cCC-c
Q 021925           83 TGAQLFTFN------------------------------------------------------FDSPARSVDFA-VGD-K  106 (305)
Q Consensus        83 ~~~~~~~~~------------------------------------------------------~~~~v~~~~~~-~~~-~  106 (305)
                      .+..+..-.                                                      ..+.+.+..+. .++ .
T Consensus        86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~  165 (323)
T KOG0322|consen   86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST  165 (323)
T ss_pred             CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence            532211100                                                      00011111111 011 1


Q ss_pred             eEEEeCCcceeeeeeEEEEEeeccc----CCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC--cE
Q 021925          107 LAVITTDPFMELNSAIHVKRIARDP----ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG--KL  180 (305)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~  180 (305)
                      .++.++    ...+.+..|++....    .....+.......|..++.++.+.+....=++|+.+..+..|++...  ..
T Consensus       166 ~lllaG----yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl  241 (323)
T KOG0322|consen  166 FLLLAG----YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL  241 (323)
T ss_pred             EEEEEe----ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence            122111    123445556654421    11223445566789999999999987777778888889999998743  21


Q ss_pred             eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       181 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ....+ ..-.+..|..+..-||++.+|+++.|++||||..++++++..+. |...|++++|+|+.+.+|+|+.|..
T Consensus       242 q~~~e-~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r  316 (323)
T KOG0322|consen  242 QIRKE-ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR  316 (323)
T ss_pred             cccce-EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence            11111 01234568889999999999999999999999999999999998 8899999999999999999999887

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=6.6e-19  Score=126.32  Aligned_cols=222  Identities=18%  Similarity=0.220  Sum_probs=165.2

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCC----------CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADN----------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      ..|.+-+++|.+++|++|..+|.|.+..+.+          ...+...++|.++|..++|..  .+|++|+. |.|+=|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~gd-G~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGGD-GLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeeccC-ceEEEee
Confidence            3466678999999999999999999998753          224445688999999999983  36777665 9999998


Q ss_pred             cCCCCe------eEEEe--------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC
Q 021925           81 VETGAQ------LFTFN--------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (305)
Q Consensus        81 ~~~~~~------~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (305)
                      .+....      +....        .-..|.+|...|..+.++.+.+     +..+..+++      +.++..+.+++|.
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG-----D~~~y~~dl------E~G~i~r~~rGHt  156 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG-----DGVIYQVDL------EDGRIQREYRGHT  156 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC-----CeEEEEEEe------cCCEEEEEEcCCc
Confidence            764432      11111        2235778888887665555544     344444554      4567888999999


Q ss_pred             CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccC------C-ccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG------H-KKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  219 (305)
                      +.+.++.--.....+++|++||++++||.++++.++.+.....      | ...|.+++.+  ..+|++|+ ...+.+|.
T Consensus       157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwh  233 (325)
T KOG0649|consen  157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWH  233 (325)
T ss_pred             ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEe
Confidence            9999999866667799999999999999999999888764321      1 2345566554  55888877 44699999


Q ss_pred             cCCceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925          220 ARTLELIKTYVTERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       220 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      +++.++...+....++..+.|..+  .+++++
T Consensus       234 Lrsse~t~vfpipa~v~~v~F~~d--~vl~~G  263 (325)
T KOG0649|consen  234 LRSSESTCVFPIPARVHLVDFVDD--CVLIGG  263 (325)
T ss_pred             ccCCCceEEEecccceeEeeeecc--eEEEec
Confidence            999999999999999999999776  344444

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.86  E-value=2.4e-19  Score=148.47  Aligned_cols=253  Identities=17%  Similarity=0.174  Sum_probs=176.5

Q ss_pred             ceEecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCee--eEEe----cCCCcceEEEEEcCCC--cEEEEEeCC
Q 021925            3 PILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER--LGTY----RGHNGAVWCCDVSRDS--MTLITGSAD   73 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~--~~~~----~~~~~~v~~i~~~~~~--~~l~s~~~d   73 (305)
                      |-..-.-..+|++++|+| +..++|.|+.+|.|.+||+..+..  ...+    ..|..++..+.|..+.  .-+++++.|
T Consensus       235 Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD  314 (555)
T KOG1587|consen  235 PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD  314 (555)
T ss_pred             ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC
Confidence            334344567899999999 667888899999999999987664  2222    3588999999997744  449999999


Q ss_pred             CcEEEEecCCCCeeE-------------EEeeCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceE
Q 021925           74 QTAKLWNVETGAQLF-------------TFNFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESV  139 (305)
Q Consensus        74 g~v~vwd~~~~~~~~-------------~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (305)
                      |.|..|+++.-....             .......+.+++|.+.. ..++++++.+....+.........   ....+..
T Consensus       315 G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~---~~~~~~~  391 (555)
T KOG1587|consen  315 GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP---EVSYKGH  391 (555)
T ss_pred             CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc---ccccccc
Confidence            999999876433211             11133467788888844 445555543332221111000000   0112344


Q ss_pred             EEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCcEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEE
Q 021925          140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKL  217 (305)
Q Consensus       140 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i  217 (305)
                      .....|.++|+.+.++|-+..++..+.|.+++||... ...++..+.   .+...|++++|||-. ..++++..||.+.+
T Consensus       392 ~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~---~~~~~v~~vaWSptrpavF~~~d~~G~l~i  468 (555)
T KOG1587|consen  392 STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD---SSPDYVTDVAWSPTRPAVFATVDGDGNLDI  468 (555)
T ss_pred             ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh---hccceeeeeEEcCcCceEEEEEcCCCceeh
Confidence            4667889999999999988655555559999999987 666666665   566779999999965 45788888999999


Q ss_pred             EEcCCc--eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEe
Q 021925          218 WDARTL--ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLV  261 (305)
Q Consensus       218 wd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~  261 (305)
                      ||+...  .++.+.. .....+.+.|+++|+.|++|...|...++.+
T Consensus       469 WDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  469 WDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             hhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            998754  4444444 4555678889999999999999987554444

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.86  E-value=2.1e-21  Score=160.78  Aligned_cols=240  Identities=16%  Similarity=0.298  Sum_probs=179.8

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .|.||...|+|..|...|.++++|+.|..|+||..+++.++....+|.+.|+.++.+.+..++++++.|..|++|.+..+
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            37899999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC--------CCceEEEE-------------
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ--------GGESVLIL-------------  142 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-------------  142 (305)
                      .++..+. +.+.|++++|+|-.   ....      ++...+|+........        .......+             
T Consensus       265 ~pvsvLrghtgavtaiafsP~~---sss~------dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRA---SSSD------DGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             chHHHHhccccceeeeccCccc---cCCC------CCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            9988877 89999999999955   1111      2333333333111000        00000000             


Q ss_pred             ---eccCCCeeEEEEcCCCC-----------EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEE
Q 021925          143 ---KGPQGRINRAVWGPLNR-----------TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFL  207 (305)
Q Consensus       143 ---~~~~~~i~~~~~~~~~~-----------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~  207 (305)
                         ....-.+.+++|....-           +.+++-.+-.+++|++.++...+.+.   +|...+..+.++|-.. ...
T Consensus       336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~---ghsd~~yvLd~Hpfn~ri~m  412 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM---GHSDEVYVLDVHPFNPRIAM  412 (1113)
T ss_pred             CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc---ccccceeeeeecCCCcHhhh
Confidence               00011122222322222           33334455678899999998888777   8999999999999554 456


Q ss_pred             EEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          208 TGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       208 ~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      +++.||...|||+-.|.+++.+. ....+...+||++|..++...+.|..
T Consensus       413 sag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql  462 (1113)
T KOG0644|consen  413 SAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQL  462 (1113)
T ss_pred             hccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCce
Confidence            89999999999999998888776 55567788999999988887766664

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.85  E-value=1e-19  Score=133.57  Aligned_cols=197  Identities=21%  Similarity=0.299  Sum_probs=152.6

Q ss_pred             cccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCe---eeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEec
Q 021925            7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNV   81 (305)
Q Consensus         7 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~   81 (305)
                      ..+..++++..|+. +-++|.+++-|.+..|||++++.   ...++-+|..+|..++|..++ ..+|++|.||.|++||+
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL  226 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence            34677899999998 77899999999999999999863   356778899999999999855 58899999999999999


Q ss_pred             CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CE
Q 021925           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RT  160 (305)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  160 (305)
                      +..+-...+-.+                                                 .....+...++|+++. ++
T Consensus       227 R~leHSTIIYE~-------------------------------------------------p~~~~pLlRLswnkqDpny  257 (364)
T KOG0290|consen  227 RSLEHSTIIYED-------------------------------------------------PSPSTPLLRLSWNKQDPNY  257 (364)
T ss_pred             cccccceEEecC-------------------------------------------------CCCCCcceeeccCcCCchH
Confidence            865432221100                                                 0113345567777755 67


Q ss_pred             EEEeeCC-CcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCc------eEEEEEee
Q 021925          161 IISAGED-AIVRIWDTET-GKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL------ELIKTYVT  231 (305)
Q Consensus       161 l~~~~~d-g~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~  231 (305)
                      +|+-..| ..|.|.|++. ..++..++   +|.+.|+.++|.|. ...|++++.|..+.+||+.+.      .++..+..
T Consensus       258 mATf~~dS~~V~iLDiR~P~tpva~L~---~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a  334 (364)
T KOG0290|consen  258 MATFAMDSNKVVILDIRVPCTPVARLR---NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA  334 (364)
T ss_pred             HhhhhcCCceEEEEEecCCCcceehhh---cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc
Confidence            7877665 5799999986 45666776   89999999999995 467999999999999999753      23444557


Q ss_pred             CCCeeEEEecC-CCCcEEEeeCCcE
Q 021925          232 ERPVNAVTMSP-LLDHVCIGEPQTI  255 (305)
Q Consensus       232 ~~~v~~~~~~~-~~~~l~~~~~~~~  255 (305)
                      +..|+.+.|+| ...+++++.+...
T Consensus       335 ~~EVNqi~Ws~~~~Dwiai~~~kkl  359 (364)
T KOG0290|consen  335 GGEVNQIQWSSSQPDWIAICFGKKL  359 (364)
T ss_pred             cceeeeeeecccCCCEEEEEecCee
Confidence            88899999995 5667888877664

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2.4e-20  Score=148.13  Aligned_cols=214  Identities=27%  Similarity=0.392  Sum_probs=157.0

Q ss_pred             Cce-EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----------eeeEEecCCCcceEEEEEcCCCcEEEEE
Q 021925            2 RPI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----------ERLGTYRGHNGAVWCCDVSRDSMTLITG   70 (305)
Q Consensus         2 ~~~-~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~l~s~   70 (305)
                      +|+ ++++|.++|.|+++.++++++++|+-||+|+.|++...          .....+.||.+.|+.+++++....|+++
T Consensus       335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc  414 (577)
T KOG0642|consen  335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC  414 (577)
T ss_pred             eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee
Confidence            354 59999999999999999999999999999999966521          2345678999999999999988899999


Q ss_pred             eCCCcEEEEecCCCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe----
Q 021925           71 SADQTAKLWNVETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK----  143 (305)
Q Consensus        71 ~~dg~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  143 (305)
                      +.||+++.|+...... ..+.   ......++.+.........++.       ......+...   ........+.    
T Consensus       415 s~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~-------~~~~~~~~~~---ev~s~~~~~~s~~~  483 (577)
T KOG0642|consen  415 SSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASF-------RFGYTSIDDM---EVVSDLLIFESSAS  483 (577)
T ss_pred             cCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhc-------ccccccchhh---hhhhheeeccccCC
Confidence            9999999999876665 3332   3334445555443311111110       0000000000   0000111111    


Q ss_pred             ---ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          144 ---GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       144 ---~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                         .....+..+.++|.+...+++..|+.|+++|..+++++....   .|...++++++.|+|.+|++++.|+++++|.+
T Consensus       484 ~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~---a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  484 PGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV---AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             CcccccCccceEEecCCCCeeEecccCCceecccccccccchhee---eccceecceeecCCCceEEeecCCceeehhhc
Confidence               112457788999999999999999999999999999998887   79999999999999999999999999999999


Q ss_pred             CCceEEEEE
Q 021925          221 RTLELIKTY  229 (305)
Q Consensus       221 ~~~~~~~~~  229 (305)
                      ....++...
T Consensus       561 d~k~~~~es  569 (577)
T KOG0642|consen  561 DVKTCVLES  569 (577)
T ss_pred             cchheeecc
Confidence            877666544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=1.4e-17  Score=134.31  Aligned_cols=239  Identities=9%  Similarity=0.072  Sum_probs=157.6

Q ss_pred             cccceEEEEEcCCCCEEEEee-CCCceEEEEcCC-Cee--eEEecCCCcceEEEEEcCCCcEEEEEeC-CCcEEEEecCC
Q 021925            9 HERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADN-GER--LGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVET   83 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~-~~~--~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~vwd~~~   83 (305)
                      +.+....++++|++++|++++ .++.|.+|+++. ++.  +.... ..+....++|+|++++|++++. ++.|.+|++++
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence            345677899999999987764 478999999863 332  22222 3345688999999998888765 88999999974


Q ss_pred             CC----eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCC-ceEEEEeccCCCeeEEEEcCCC
Q 021925           84 GA----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG-ESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        84 ~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      ..    .+..+.....+..++++|+++.++++..    ..+.+.++++......... ...... ........+.|+|++
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~----~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg  186 (330)
T PRK11028        112 DGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL----KEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHPNQ  186 (330)
T ss_pred             CCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC----CCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECCCC
Confidence            32    2222333445678889999988876653    2345666666432111100 000111 112346789999999


Q ss_pred             CEEEEeeC-CCcEEEEeCCC--Cc--Eeeeecccc---CCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCCce----E
Q 021925          159 RTIISAGE-DAIVRIWDTET--GK--LLKESDKET---GHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLE----L  225 (305)
Q Consensus       159 ~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~----~  225 (305)
                      +++++++. ++.|.+||+..  ++  .+..+....   .+......+.++|++++++++.. ++.|.+|++....    .
T Consensus       187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~  266 (330)
T PRK11028        187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF  266 (330)
T ss_pred             CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence            99988876 89999999973  22  233332110   11223346889999999988864 7899999985432    2


Q ss_pred             EEEEeeCCCeeEEEecCCCCcEEEeeCC
Q 021925          226 IKTYVTERPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       226 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~  253 (305)
                      +...........++++|+|++|+++...
T Consensus       267 ~~~~~~~~~p~~~~~~~dg~~l~va~~~  294 (330)
T PRK11028        267 EGHQPTETQPRGFNIDHSGKYLIAAGQK  294 (330)
T ss_pred             eEEEeccccCCceEECCCCCEEEEEEcc
Confidence            3333334456789999999999988753

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=7e-19  Score=146.08  Aligned_cols=223  Identities=16%  Similarity=0.142  Sum_probs=153.8

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe-CCCcEEE
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKL   78 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~v~v   78 (305)
                      +..+..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++... +....+....++|+|||+.|+.++ .+|.+.|
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I  274 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNI  274 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence            44567788899999999999999987654   369999998875422 222223345689999999888764 6787665


Q ss_pred             E--ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           79 W--NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        79 w--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      |  |+.+++..........+....|+|+++.++..++.    .+...++.+....     .....+ .+..  ....|+|
T Consensus       275 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~----~g~~~I~~~~~~~-----~~~~~l-~~~~--~~~~~Sp  342 (429)
T PRK01742        275 YVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDR----SGSPQVYRMSASG-----GGASLV-GGRG--YSAQISA  342 (429)
T ss_pred             EEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECC----CCCceEEEEECCC-----CCeEEe-cCCC--CCccCCC
Confidence            5  66666654444455667889999999987766532    1233444443211     111222 2333  4578999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC--CceEEEEEe-eCC
Q 021925          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR--TLELIKTYV-TER  233 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~-~~~  233 (305)
                      +|++|+..+.++ +.+||+.+++......   ..  ....+.|+|+|++|+.++.+|...+|++.  +++....+. ++.
T Consensus       343 DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g  416 (429)
T PRK01742        343 DGKTLVMINGDN-VVKQDLTSGSTEVLSS---TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG  416 (429)
T ss_pred             CCCEEEEEcCCC-EEEEECCCCCeEEecC---CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC
Confidence            999998887755 6669998887543222   11  23457899999999999999988888763  577777776 566


Q ss_pred             CeeEEEecCCC
Q 021925          234 PVNAVTMSPLL  244 (305)
Q Consensus       234 ~v~~~~~~~~~  244 (305)
                      .+...+|+|-.
T Consensus       417 ~~~~p~wsp~~  427 (429)
T PRK01742        417 QVKFPAWSPYL  427 (429)
T ss_pred             CCCCcccCCCC
Confidence            78899999853

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.84  E-value=1.5e-20  Score=146.17  Aligned_cols=225  Identities=16%  Similarity=0.213  Sum_probs=190.1

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   91 (305)
                      .-..+.++.+|++++.|+..|.|..+|..+++....+. -...|.++.|..+..++|++-. ..+.||| ..|..++.+.
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD-~~GtElHClk  207 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQK-KYVYVYD-NNGTELHCLK  207 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhh-ceEEEec-CCCcEEeehh
Confidence            35678899999999999999999999999999888887 4567999999988888887655 7899999 4588889999


Q ss_pred             eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (305)
Q Consensus        92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  171 (305)
                      ....+..+.|-|..-++++++........++.           .++.+..+....+.+..++-+|-+..+-+|...|+|.
T Consensus       208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-----------~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVS  276 (545)
T KOG1272|consen  208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVS-----------TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVS  276 (545)
T ss_pred             hcCchhhhcccchhheeeecccCCceEEEeec-----------hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEE
Confidence            89999999999999999988875444333332           2344555566677888899999998999999999999


Q ss_pred             EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      +|.....+++..+.   .|.++|.++++.++|++++|.+.|..++|||++....+.++....+...+++|..| +||++-
T Consensus       277 lWSP~skePLvKiL---cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~  352 (545)
T KOG1272|consen  277 LWSPNSKEPLVKIL---CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSY  352 (545)
T ss_pred             ecCCCCcchHHHHH---hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeec
Confidence            99999988888776   79999999999999999999999999999999999988888877788999999877 556555


Q ss_pred             CCc
Q 021925          252 PQT  254 (305)
Q Consensus       252 ~~~  254 (305)
                      ++.
T Consensus       353 G~~  355 (545)
T KOG1272|consen  353 GDH  355 (545)
T ss_pred             CCe
Confidence            555

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.5e-20  Score=160.71  Aligned_cols=209  Identities=19%  Similarity=0.288  Sum_probs=168.3

Q ss_pred             ecccccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEec--CCCcceEEEEEcC-CCcEEEEEeCCCcEEEEec
Q 021925            6 MKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSR-DSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~   81 (305)
                      ...|+++|..+.|++.+. .||+|+.||.|.|||+.+.+.-.+..  ...+.|.+++|+. ....|++++.+|...|||+
T Consensus       112 ~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDl  191 (1049)
T KOG0307|consen  112 KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDL  191 (1049)
T ss_pred             hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccc
Confidence            567999999999999654 99999999999999998755433332  2457899999987 4467899999999999999


Q ss_pred             CCCCeeEEEeeC---CCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           82 ETGAQLFTFNFD---SPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        82 ~~~~~~~~~~~~---~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      +..+.+..+...   ..+..++|+|++. .++++++.  ...-.+..|+++..     ..+.+.+++|...|.++.|++.
T Consensus       192 r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d--d~~PviqlWDlR~a-----ssP~k~~~~H~~GilslsWc~~  264 (1049)
T KOG0307|consen  192 RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD--DSAPVIQLWDLRFA-----SSPLKILEGHQRGILSLSWCPQ  264 (1049)
T ss_pred             cCCCcccccccCCCccceeeeeeCCCCceeeeeecCC--CCCceeEeeccccc-----CCchhhhcccccceeeeccCCC
Confidence            999888777733   3477899999764 34444331  12345667776643     3567778999999999999997


Q ss_pred             C-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCce
Q 021925          158 N-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       158 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  224 (305)
                      + .++++++.|+.|.+|+.++++.+..+.   .....+..+.|+|... .+++++.||.|.|+.+....
T Consensus       265 D~~lllSsgkD~~ii~wN~~tgEvl~~~p---~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  265 DPRLLLSSGKDNRIICWNPNTGEVLGELP---AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CchhhhcccCCCCeeEecCCCceEeeecC---CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            7 888999999999999999999999987   5678899999999665 78899999999999987654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.2e-18  Score=143.86  Aligned_cols=255  Identities=19%  Similarity=0.262  Sum_probs=177.9

Q ss_pred             CceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC---cEEEEEeCCCcEEE
Q 021925            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS---MTLITGSADQTAKL   78 (305)
Q Consensus         2 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~s~~~dg~v~v   78 (305)
                      +|..+.|-...-..-.|++|++.++... +..|.||...+++++..+.+|..++..+.+.|..   .++++++.||.|++
T Consensus         8 ~~~~lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~v   86 (792)
T KOG1963|consen    8 KPALLGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRV   86 (792)
T ss_pred             ceeeeccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEE
Confidence            3445555444445567899999888766 5699999999999999999999999999998844   46779999999999


Q ss_pred             EecCCCCeeEEEeeCCCceEEEEecC---CceEE-EeCCccee-------------------------------------
Q 021925           79 WNVETGAQLFTFNFDSPARSVDFAVG---DKLAV-ITTDPFME-------------------------------------  117 (305)
Q Consensus        79 wd~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~-~~~~~~~~-------------------------------------  117 (305)
                      ||...+..+..+....++..+.+.|.   ....+ ........                                     
T Consensus        87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I  166 (792)
T KOG1963|consen   87 WDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI  166 (792)
T ss_pred             ecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence            99999999988887776666655331   01111 11110000                                     


Q ss_pred             ------------eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC-CcEeeee
Q 021925          118 ------------LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKES  184 (305)
Q Consensus       118 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~  184 (305)
                                  ....+..+......  ........-..|...+++.++||+++++|+|..||+|.+|.--. ...-.+.
T Consensus       167 ~~~~~ge~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~  244 (792)
T KOG1963|consen  167 VDNNSGEFKGIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETC  244 (792)
T ss_pred             EEcCCceEEEEEEeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccc
Confidence                        00000011100000  00000011123555689999999999999999999999996432 1222222


Q ss_pred             ccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925          185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       185 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~  259 (305)
                      ....-|...|++++|+++|.+|++|+.+|.+-+|.+.+++...--+.+++|..+.++||+.+.++...|+.....
T Consensus       245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li  319 (792)
T KOG1963|consen  245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI  319 (792)
T ss_pred             eEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence            222368899999999999999999999999999999999844444488999999999999998888777765433

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.83  E-value=6.5e-19  Score=142.11  Aligned_cols=243  Identities=16%  Similarity=0.182  Sum_probs=172.3

Q ss_pred             EEEcC---CCCEEEEeeCCCceEEEEcCCCee------eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925           16 LKYNK---DGDLLFSCAKDHTPTVWFADNGER------LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus        16 ~~~~~---~~~~l~s~~~dg~v~iw~~~~~~~------~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      ..|++   ....||.+.+||.|.++|......      +.....|...|.++.|.|....|++++.|.++++||+++++.
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            56655   335788899999999999765332      244567999999999999777899999999999999998887


Q ss_pred             eEE---EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC---------------------CCCceEEEE
Q 021925           87 LFT---FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD---------------------QGGESVLIL  142 (305)
Q Consensus        87 ~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~  142 (305)
                      ...   +.|...+.+++|.+.+..+++.+.    .++.+.+|++......                     ...+.+...
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg----RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~  210 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGG----RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW  210 (720)
T ss_pred             ecceeecccccccchhhhccCCCcceeecc----CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence            655   348899999999998876666543    3566667776543310                     001222334


Q ss_pred             eccCCCeeE---EEEcCCCCEEEEeeC-CCcEEEEeCCCCcEeeeecc-----ccCC---ccceEEEEEcCCCCEEEEEe
Q 021925          143 KGPQGRINR---AVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDK-----ETGH---KKTITSLAKAADGSHFLTGS  210 (305)
Q Consensus       143 ~~~~~~i~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-----~~~~---~~~v~~~~~~~~~~~l~~~~  210 (305)
                      +.+...|.+   +.+..|...||+++. |+.|++||+++.......+.     ...|   ...+.++.....|.+|++.+
T Consensus       211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence            455566666   667788889999887 99999999997554332221     1122   34678888888889998888


Q ss_pred             CCCeEEEEEcCCce--EEEEEeeC---CCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925          211 LDKSAKLWDARTLE--LIKTYVTE---RPVNAVTMSPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       211 ~dg~i~iwd~~~~~--~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                      .|++|++|++.+..  ++..+.+.   .--..-..+|++.++++|+.+.....+.+.
T Consensus       291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs  347 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS  347 (720)
T ss_pred             cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence            89999999998643  33333311   112233578999999999999874444333

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=6.1e-17  Score=135.21  Aligned_cols=237  Identities=30%  Similarity=0.502  Sum_probs=186.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-eeEEecCCC-cceEEEEE-cCCCc-EEEEEeC-CCcEEEE
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHN-GAVWCCDV-SRDSM-TLITGSA-DQTAKLW   79 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~-~~v~~i~~-~~~~~-~l~s~~~-dg~v~vw   79 (305)
                      .+.+|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+..+. ..+..+.+ .+++. .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            456899999999999999999999999999999998876 666776644 37777777 78777 5555455 9999999


Q ss_pred             ecCC-CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           80 NVET-GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        80 d~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      +... ......+. +...+..++++|++..++.+..    ....+..|+...      ......+.+|...+.+++|+|+
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~  209 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS----LDGTIKLWDLRT------GKPLSTLAGHTDPVSSLAFSPD  209 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC----CCCceEEEEcCC------CceEEeeccCCCceEEEEEcCC
Confidence            9987 55555554 7788899999999986666642    345556666543      4567777789999999999999


Q ss_pred             CC-EEEEeeCCCcEEEEeCCCCcEee-eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE-EEEE-eeCC
Q 021925          158 NR-TIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTY-VTER  233 (305)
Q Consensus       158 ~~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~-~~~~  233 (305)
                      +. .+++++.|+.|++||...+.... .+.   +|.... ...|+|++..+++++.|+.+++|+.+.... +..+ .+..
T Consensus       210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  285 (466)
T COG2319         210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLS---GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS  285 (466)
T ss_pred             cceEEEEecCCCcEEEEECCCCcEEeeecC---CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc
Confidence            98 55555899999999998777776 454   566664 338999998899999999999999987664 4444 3678


Q ss_pred             CeeEEEecCCCCcEEEeeCCcE
Q 021925          234 PVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       234 ~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      .+.++.|+|++..+++++.++.
T Consensus       286 ~v~~~~~~~~~~~~~~~~~d~~  307 (466)
T COG2319         286 SVLSVAFSPDGKLLASGSSDGT  307 (466)
T ss_pred             cEEEEEECCCCCEEEEeeCCCc
Confidence            9999999998888888777743

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.4e-18  Score=142.67  Aligned_cols=250  Identities=17%  Similarity=0.204  Sum_probs=167.8

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC----CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      .|...+++.++||+++++|+|..||.|.+|.--.    ......++-|..+|.+++|+++|.+|+||+..|.+.+|.+++
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            5777799999999999999999999999995221    123456777999999999999999999999999999999999


Q ss_pred             CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC---CCCCceE--EEEeccCCCeeEEEEcCCC
Q 021925           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---DQGGESV--LILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~i~~~~~~~~~  158 (305)
                      ++...--+..+++..+.++|++...+....     ++.+.+........   ....++.  ..-....+-.+.++++|.-
T Consensus       283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~-----DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~  357 (792)
T KOG1963|consen  283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLE-----DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT  357 (792)
T ss_pred             CCcccccccCCeeEEEEEcCCCCeEEEEec-----CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence            996555569999999999999987776654     22222222111000   0000000  0011223445566777766


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeecc----------------------------------------------------
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDK----------------------------------------------------  186 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------------------------------------  186 (305)
                      +.++..+..|.|.+||+.+.+.+..+..                                                    
T Consensus       358 ~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~  437 (792)
T KOG1963|consen  358 NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY  437 (792)
T ss_pred             CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence            6666667777777777765443332211                                                    


Q ss_pred             -------------ccCCccceEEEEEcC-CCC-EEEEEeCCCeEEEEEcCC------ce----EEEEE-eeCCCeeEEEe
Q 021925          187 -------------ETGHKKTITSLAKAA-DGS-HFLTGSLDKSAKLWDART------LE----LIKTY-VTERPVNAVTM  240 (305)
Q Consensus       187 -------------~~~~~~~v~~~~~~~-~~~-~l~~~~~dg~i~iwd~~~------~~----~~~~~-~~~~~v~~~~~  240 (305)
                                   ..+|...+...++.+ ... ..++++.||.+++|-+.+      ..    +...- .+..++++++|
T Consensus       438 n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f  517 (792)
T KOG1963|consen  438 NPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF  517 (792)
T ss_pred             cCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence                         123555444444433 333 789999999999998732      21    11111 16889999999


Q ss_pred             cCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          241 SPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      +.||..|+++.++.      +.+|+...
T Consensus       518 s~dGslla~s~~~~------Itiwd~~~  539 (792)
T KOG1963|consen  518 SQDGSLLAVSFDDT------ITIWDYDT  539 (792)
T ss_pred             cCCCcEEEEecCCE------EEEecCCC
Confidence            99998888776665      55565544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.2e-19  Score=144.07  Aligned_cols=220  Identities=20%  Similarity=0.268  Sum_probs=159.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcC--CCcEEEEEeCCCcEEEEec
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSR--DSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd~   81 (305)
                      .|+||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+++..+. +|...|.++.|.|  +.+.+++|..|..|+++|+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl  124 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL  124 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence            588999999999999999999999999999999998888877765 7999999999999  5568899999999999998


Q ss_pred             CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CE
Q 021925           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RT  160 (305)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  160 (305)
                      ...+.-..                                          .....+.......|...|..++..|++ ..
T Consensus       125 ~~~~~~~~------------------------------------------d~~~~~~~~~~~cht~rVKria~~p~~Pht  162 (758)
T KOG1310|consen  125 DSSKEGGM------------------------------------------DHGMEETTRCWSCHTDRVKRIATAPNGPHT  162 (758)
T ss_pred             cccccccc------------------------------------------ccCccchhhhhhhhhhhhhheecCCCCCce
Confidence            75332110                                          001123455567888999999999998 78


Q ss_pred             EEEeeCCCcEEEEeCCCCcEee-------eeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCc--------e
Q 021925          161 IISAGEDAIVRIWDTETGKLLK-------ESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL--------E  224 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~--------~  224 (305)
                      +.++++||+|+-+|++......       .+.......-...++..+|. ..+|++|+.|-..++||.+..        .
T Consensus       163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~  242 (758)
T KOG1310|consen  163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT  242 (758)
T ss_pred             EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence            8899999999999998632211       11111122245678899995 457899999999999994321        1


Q ss_pred             ----------EEEEEe--eC-----------CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925          225 ----------LIKTYV--TE-----------RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       225 ----------~~~~~~--~~-----------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
                                ++.-+.  |-           ..++-+.|+|+|.-|++.-+...     ++++++..+..
T Consensus       243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEh-----VYlfdvn~~~~  307 (758)
T KOG1310|consen  243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEH-----VYLFDVNEDKS  307 (758)
T ss_pred             ccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeE-----EEEEeecCCCC
Confidence                      122221  10           11466789999988777655444     55555544443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=6.2e-17  Score=120.51  Aligned_cols=237  Identities=12%  Similarity=0.151  Sum_probs=163.8

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCC------CcEEEEecCCC
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSAD------QTAKLWNVETG   84 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d------g~v~vwd~~~~   84 (305)
                      ....++|+.|...++.|..+| .+||+.+--+...+.+.+.+.+.-+...-..++|+ +||.+      ..|.|||=...
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            345599999999998887665 69998876443333222333322222222334554 34333      56999998888


Q ss_pred             CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc--CCCeeEEEEcCCCCEEE
Q 021925           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--QGRINRAVWGPLNRTII  162 (305)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~  162 (305)
                      +++.++....+|.++.+.++.-.++..        ..+.++......     +.++.+...  .....+++-+.+...||
T Consensus        86 ~~i~el~f~~~I~~V~l~r~riVvvl~--------~~I~VytF~~n~-----k~l~~~et~~NPkGlC~~~~~~~k~~La  152 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRRDRIVVVLE--------NKIYVYTFPDNP-----KLLHVIETRSNPKGLCSLCPTSNKSLLA  152 (346)
T ss_pred             cEEEEEEeccceeeEEEcCCeEEEEec--------CeEEEEEcCCCh-----hheeeeecccCCCceEeecCCCCceEEE
Confidence            899999999999999998876555442        334444443221     222222221  12233333333344555


Q ss_pred             Ee-eCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCceEEEEEe---eCCCe
Q 021925          163 SA-GEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIKTYV---TERPV  235 (305)
Q Consensus       163 ~~-~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~---~~~~v  235 (305)
                      .- -.-|.|+|-|+...+.  ...+.   +|...|.+++.+.+|..+||+|..|+ |||||..+|+.+.+++   ....|
T Consensus       153 fPg~k~GqvQi~dL~~~~~~~p~~I~---AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i  229 (346)
T KOG2111|consen  153 FPGFKTGQVQIVDLASTKPNAPSIIN---AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI  229 (346)
T ss_pred             cCCCccceEEEEEhhhcCcCCceEEE---cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence            43 3469999999987655  24444   79999999999999999999999998 8999999999999998   45679


Q ss_pred             eEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925          236 NAVTMSPLLDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                      .+++|||+..+|+++++.+...+..++.-.
T Consensus       230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            999999999999999999997777666543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=4.7e-17  Score=134.92  Aligned_cols=225  Identities=13%  Similarity=0.062  Sum_probs=151.9

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeC---CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEE-eCCC--cE
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQ--TA   76 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg--~v   76 (305)
                      +..+..+...+.+.+|+|||+.|+..+.   +..+++|++.+++... +....+.+..++|+|||+.|+.. +.+|  .|
T Consensus       191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I  269 (429)
T PRK03629        191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  269 (429)
T ss_pred             CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence            3445566778999999999999887542   4579999998876433 22233445678999999988754 4455  58


Q ss_pred             EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      .+||+++++..........+....|+|+++.++..++..    +...++.+...    .+ ....+...........|+|
T Consensus       270 ~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~----g~~~Iy~~d~~----~g-~~~~lt~~~~~~~~~~~Sp  340 (429)
T PRK03629        270 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA----GRPQVYKVNIN----GG-APQRITWEGSQNQDADVSS  340 (429)
T ss_pred             EEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC----CCceEEEEECC----CC-CeEEeecCCCCccCEEECC
Confidence            889998887665555556778899999999887766432    12233333211    11 2223333444556789999


Q ss_pred             CCCEEEEeeCC---CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCe---EEEEEcCCceEEEEEe
Q 021925          157 LNRTIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS---AKLWDARTLELIKTYV  230 (305)
Q Consensus       157 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~  230 (305)
                      +|++|+..+.+   ..|.+||+.+++.. .+..  .  .......|+|||+.|+.++.++.   +.++++. ++....+.
T Consensus       341 DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~--~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~  414 (429)
T PRK03629        341 DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD--T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP  414 (429)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCCeE-EeCC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc
Confidence            99998876543   35889999887643 3331  1  12345789999999999887764   6777774 54445554


Q ss_pred             -eCCCeeEEEecCC
Q 021925          231 -TERPVNAVTMSPL  243 (305)
Q Consensus       231 -~~~~v~~~~~~~~  243 (305)
                       ++..+...+|+|-
T Consensus       415 ~~~~~~~~p~Wsp~  428 (429)
T PRK03629        415 ATDGQVKFPAWSPY  428 (429)
T ss_pred             cCCCCcCCcccCCC
Confidence             5677888999874

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.81  E-value=2.9e-18  Score=126.41  Aligned_cols=214  Identities=19%  Similarity=0.294  Sum_probs=158.1

Q ss_pred             cccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC---CcEEEEEeCCCcEEEEecC
Q 021925            7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         7 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+|+-.|.++.|-| |.-.+.+++.|.++++||..+.+....++ .++.|.+-+++|=   .-++|+|..|-.|++-|+.
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            47888999999999 66688899999999999999998888887 6788999999982   3467788889999999999


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC---------CCCCceEEEEeccCCCeeEE
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---------DQGGESVLILKGPQGRINRA  152 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~  152 (305)
                      +|...+.+. +...|.++.|+|...+++..+.    .++.+++|++.+...         ....+....-..|.+.++.+
T Consensus       177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgs----aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl  252 (397)
T KOG4283|consen  177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGS----ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL  252 (397)
T ss_pred             CCcceeeeccccCceEEEEeccCceeEEEecC----CCceEEEEEeecccceeEEeecccCccCccccccccccceeeee
Confidence            999999998 8999999999999888776653    367788888876521         11122223345788999999


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCcc------ceEE-----EEEcCC--CCEEEEEeCCCeEEEEE
Q 021925          153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK------TITS-----LAKAAD--GSHFLTGSLDKSAKLWD  219 (305)
Q Consensus       153 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~v~~-----~~~~~~--~~~l~~~~~dg~i~iwd  219 (305)
                      +|..++.++++++.|..+++|+..+|+....-.....|+.      .+.+     +.+-|.  +-.|++..+-..|+.|+
T Consensus       253 a~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~  332 (397)
T KOG4283|consen  253 AWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLS  332 (397)
T ss_pred             eecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeee
Confidence            9999999999999999999999987753211110001110      0111     122232  23455666677899999


Q ss_pred             cCCceEE
Q 021925          220 ARTLELI  226 (305)
Q Consensus       220 ~~~~~~~  226 (305)
                      .. ++.+
T Consensus       333 ~h-~k~i  338 (397)
T KOG4283|consen  333 TH-LKRI  338 (397)
T ss_pred             cc-ccee
Confidence            87 4433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=1.4e-17  Score=138.42  Aligned_cols=208  Identities=13%  Similarity=0.068  Sum_probs=143.7

Q ss_pred             CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---CcEEEEecCCCCeeEEEeeCCCceEEEEecCCce
Q 021925           31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKL  107 (305)
Q Consensus        31 dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  107 (305)
                      +..|++||..... ...+..|...+.+++|+|||+.|+.++.+   ..|.+||+++++..............+|+|+++.
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence            4689999976444 55677788899999999999999887653   3699999988865444334455667899999998


Q ss_pred             EEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCC-cEeeeec
Q 021925          108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETG-KLLKESD  185 (305)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~  185 (305)
                      ++.+...    .+...++.+...     ......+..+...+....|+|+|+.|+..+ .+|...||++... .....+.
T Consensus       262 La~~~~~----~g~~~Iy~~d~~-----~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~  332 (429)
T PRK01742        262 LAFASSK----DGVLNIYVMGAN-----GGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG  332 (429)
T ss_pred             EEEEEec----CCcEEEEEEECC-----CCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec
Confidence            8775421    122233333211     122445566677788999999999877655 5788888876532 2222221


Q ss_pred             cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                          +..  ....|+|||+.|+..+.++ +.+||+.+++....... ....+++|+|+|++|+.++.++..
T Consensus       333 ----~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~  395 (429)
T PRK01742        333 ----GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLG  395 (429)
T ss_pred             ----CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCc
Confidence                222  3578999999998887765 66699998865432222 234678899999999999877764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.81  E-value=9.2e-19  Score=142.38  Aligned_cols=209  Identities=16%  Similarity=0.217  Sum_probs=148.2

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      +|+||++.|++++|+.||+.+|+|+.|+.|.+|+.. .+-+..+. |.+.|.|+.|+|-...|++++.+ ..-+|..+ .
T Consensus        48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYS-H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~-q  123 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYS-HNDAIQCMSFNPITHQLASCSLS-DFGLWSPE-Q  123 (1081)
T ss_pred             ccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeec-cCCeeeEeecCchHHHhhhcchh-hccccChh-h
Confidence            578999999999999999999999999999999743 23333444 99999999999988899998874 57899865 3


Q ss_pred             CeeEEEeeCCCceEEEEecCCceEEEeCCc-ceeeeeeE---------------EEEEeecccCCCC-------------
Q 021925           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDP-FMELNSAI---------------HVKRIARDPADQG-------------  135 (305)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~~-------------  135 (305)
                      +.+...+....+.+++|..+|.+++.+..+ .+.+.+..               .+|.+...+....             
T Consensus       124 K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q  203 (1081)
T KOG1538|consen  124 KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ  203 (1081)
T ss_pred             hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc
Confidence            445556677788999999999999987642 12111110               0111111111000             


Q ss_pred             --------CceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEE
Q 021925          136 --------GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL  207 (305)
Q Consensus       136 --------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  207 (305)
                              ++.+..-+.-.-...|+.+.|+|.+++.|+.|+.+++|.. .|-.+.++.   .....|+.++..|+++.++
T Consensus       204 TLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg---~~D~WIWtV~~~PNsQ~v~  279 (1081)
T KOG1538|consen  204 TLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVG---EQDSWIWTVQAKPNSQYVV  279 (1081)
T ss_pred             eeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecc---ccceeEEEEEEccCCceEE
Confidence                    0000001111223456677778888888888888888874 465666665   4677999999999999999


Q ss_pred             EEeCCCeEEEEEcC
Q 021925          208 TGSLDKSAKLWDAR  221 (305)
Q Consensus       208 ~~~~dg~i~iwd~~  221 (305)
                      .|+.||+|.-|++.
T Consensus       280 ~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  280 VGCQDGTIACYNLI  293 (1081)
T ss_pred             EEEccCeeehhhhH
Confidence            99999999999864

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=8.9e-18  Score=128.56  Aligned_cols=248  Identities=13%  Similarity=0.177  Sum_probs=179.4

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC------CeeeEEec-CCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------GERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg~v~v   78 (305)
                      +.+|.+.|+++.|+.++++|++|+.|..+++|+++.      .+++.... .|.+.|.|++|.....++.+|+.+++|..
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK  131 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence            679999999999999999999999999999999763      34554443 36689999999998889999999999999


Q ss_pred             EecCCCCeeEEEeeCC---CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925           79 WNVETGAQLFTFNFDS---PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (305)
Q Consensus        79 wd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (305)
                      .|+++.+.+..+.+..   .|..+..+|-.+.+++.++     .+.+.+|+....+..  . ....+.........+.|+
T Consensus       132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~-----~~~V~~~D~Rd~~~~--~-~~~~~AN~~~~F~t~~F~  203 (609)
T KOG4227|consen  132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR-----AKLVSFIDNRDRQNP--I-SLVLPANSGKNFYTAEFH  203 (609)
T ss_pred             eecccceeeeeecccCcccceeecccCCCCceEEEEec-----CceEEEEeccCCCCC--C-ceeeecCCCccceeeeec
Confidence            9999999998888555   8999999998888887766     344555555433211  1 122233445567788999


Q ss_pred             CCC-CEEEEeeCCCcEEEEeCCCCcE-eeeecccc---CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-EEEEE
Q 021925          156 PLN-RTIISAGEDAIVRIWDTETGKL-LKESDKET---GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-LIKTY  229 (305)
Q Consensus       156 ~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~  229 (305)
                      |.. .+|++.+..+-+-+||++..+. +.......   .....-.++.|+|+|+.|++--....-.+||+.+.+ .+..+
T Consensus       204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence            976 5777888889999999986432 21111111   112233567899999998887777677788887743 34444


Q ss_pred             eeC-------CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          230 VTE-------RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       230 ~~~-------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      .|.       ..+.+++|..+.. +++|+++=.     +++|.+.
T Consensus       284 D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~-----i~~WklP  322 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWG-----IHIWKLP  322 (609)
T ss_pred             cCCCCcceeeeeeeeeeeeccee-eeccCcccc-----eEEEecC
Confidence            432       2466778877755 777776655     6666554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=9.2e-17  Score=133.76  Aligned_cols=224  Identities=18%  Similarity=0.116  Sum_probs=149.5

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCC--cE
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQ--TA   76 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg--~v   76 (305)
                      +..+..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++.. .+..+.+...++.|+|||+.|+ +.+.+|  .|
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEI  274 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence            45566778889999999999999987643   46999999877653 3334455566889999998775 445555  59


Q ss_pred             EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      .+||+.+++..............+|+|+++.++..++..    +...++.+...    .++ ...+..+.......+|+|
T Consensus       275 y~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~----g~~~iy~~dl~----~g~-~~~lt~~g~~~~~~~~Sp  345 (433)
T PRK04922        275 YVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG----GRPQIYRVAAS----GGS-AERLTFQGNYNARASVSP  345 (433)
T ss_pred             EEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC----CCceEEEEECC----CCC-eEEeecCCCCccCEEECC
Confidence            999998887654434444556789999999888776422    11223322211    111 222222333445689999


Q ss_pred             CCCEEEEeeCCC---cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEEEEe
Q 021925          157 LNRTIISAGEDA---IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV  230 (305)
Q Consensus       157 ~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~  230 (305)
                      +|++|+..+.++   .|.+||+.+++.. .+.    +........|+|||++++..+.+   +.+.++++.. .....+.
T Consensus       346 DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt----~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~  419 (433)
T PRK04922        346 DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT----PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLV  419 (433)
T ss_pred             CCCEEEEEECCCCceeEEEEECCCCCeE-ECC----CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcc
Confidence            999998765433   6999999887654 333    22234457899999988776653   4588888854 4444444


Q ss_pred             -eCCCeeEEEecC
Q 021925          231 -TERPVNAVTMSP  242 (305)
Q Consensus       231 -~~~~v~~~~~~~  242 (305)
                       +...+...+|+|
T Consensus       420 ~~~g~~~~p~wsp  432 (433)
T PRK04922        420 SADGEVREPAWSP  432 (433)
T ss_pred             cCCCCCCCCccCC
Confidence             455677788887

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.79  E-value=1.2e-15  Score=127.37  Aligned_cols=238  Identities=30%  Similarity=0.475  Sum_probs=176.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeC-CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~   82 (305)
                      .+.+|...|.+++|+|+++.+++++. |+.+++|+..++..+..+.+|...|.+++|+|++. .+++++.|+.+++||..
T Consensus       150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~  229 (466)
T COG2319         150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS  229 (466)
T ss_pred             EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence            47789999999999999998888885 99999999998888899999999999999999987 55555899999999988


Q ss_pred             CCCeeE-EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           83 TGAQLF-TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        83 ~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      .+.... .+. +.... ...|++++..++.+..     ...+.+++......     ......+|...+.++.|+|++..
T Consensus       230 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~  298 (466)
T COG2319         230 TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS-----DGTIRLWDLRSSSS-----LLRTLSGHSSSVLSVAFSPDGKL  298 (466)
T ss_pred             CCcEEeeecCCCCcce-eEeECCCCCEEEEecC-----CCcEEEeeecCCCc-----EEEEEecCCccEEEEEECCCCCE
Confidence            777766 344 33333 2378998866664443     55566666653321     23333678899999999998888


Q ss_pred             EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceEEEEEeeCCCeeEEE
Q 021925          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTERPVNAVT  239 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~  239 (305)
                      +++++.|+.+.+||..+........ ...|...+..+.+.+++..++.+ ..|+.+.+|+...............+..+.
T Consensus       299 ~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (466)
T COG2319         299 LASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS  377 (466)
T ss_pred             EEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEE
Confidence            8888889999999998876655543 22466678999994332455555 688999999998887333333333388999


Q ss_pred             ecCCCCcEEE-eeCCcE
Q 021925          240 MSPLLDHVCI-GEPQTI  255 (305)
Q Consensus       240 ~~~~~~~l~~-~~~~~~  255 (305)
                      +.+ ...+.. +..++.
T Consensus       378 ~~~-~~~~~~~~~~~~~  393 (466)
T COG2319         378 FSP-DGRVVSSGSTDGT  393 (466)
T ss_pred             ECC-CCCEEEEecCCCc
Confidence            999 633333 344444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=1.6e-16  Score=132.52  Aligned_cols=225  Identities=11%  Similarity=0.061  Sum_probs=152.5

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeC---CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCc--E
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--A   76 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~--v   76 (305)
                      +..+..|.+.+.+.+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+...+|+|||+.|+ +.+.++.  |
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  272 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI  272 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence            3456778889999999999999888764   468999999887653 4555677788999999998775 5555555  7


Q ss_pred             EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      .+||+++++...............|+|+++.++..++...    ...++.+..     .+.....+..+...+....|+|
T Consensus       273 y~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----~~~Iy~~d~-----~g~~~~~lt~~~~~~~~~~~Sp  343 (435)
T PRK05137        273 YTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----SPQLYVMNA-----DGSNPRRISFGGGRYSTPVWSP  343 (435)
T ss_pred             EEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC----CCeEEEEEC-----CCCCeEEeecCCCcccCeEECC
Confidence            7779888766544445556678999999998887654211    112222221     1122333333455567789999


Q ss_pred             CCCEEEEeeCC---CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC------CeEEEEEcCCceEEE
Q 021925          157 LNRTIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD------KSAKLWDARTLELIK  227 (305)
Q Consensus       157 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~  227 (305)
                      +|+.|+..+.+   ..|.+||+..+. .+.+.    ....+....|+|||+.|+..+.+      ..++++|+..++. .
T Consensus       344 dG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt----~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~  417 (435)
T PRK05137        344 RGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT----SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-R  417 (435)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCc-eEecc----CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-E
Confidence            99999876653   368889986544 33333    22246678999999998765543      3688888876554 3


Q ss_pred             EEeeCCCeeEEEecCC
Q 021925          228 TYVTERPVNAVTMSPL  243 (305)
Q Consensus       228 ~~~~~~~v~~~~~~~~  243 (305)
                      .+.....+...+|+|-
T Consensus       418 ~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        418 EVPTPGDASDPAWSPL  433 (435)
T ss_pred             EccCCCCccCcccCCC
Confidence            4444445677788774

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.79  E-value=2e-18  Score=139.62  Aligned_cols=192  Identities=18%  Similarity=0.230  Sum_probs=143.0

Q ss_pred             ccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEe
Q 021925           10 ERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWN   80 (305)
Q Consensus        10 ~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd   80 (305)
                      ...|+++.|.| |...||.++.||.|++|.+..+       .+...+..|.+.|+++.|+| -...|++++.|-+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            45699999999 7789999999999999988753       35567888999999999999 456899999999999999


Q ss_pred             cCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      +.+++...                                                    .+.+|.+.|..++|||+|+.
T Consensus       707 l~~~~~~~----------------------------------------------------~l~gHtdqIf~~AWSpdGr~  734 (1012)
T KOG1445|consen  707 LANAKLYS----------------------------------------------------RLVGHTDQIFGIAWSPDGRR  734 (1012)
T ss_pred             hhhhhhhh----------------------------------------------------eeccCcCceeEEEECCCCcc
Confidence            98765432                                                    35789999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCcE-eeeeccccCCccceEEEEEcCCCCEEEEEeCCC----eEEEEEcCCc--eEEEEEe--e
Q 021925          161 IISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDK----SAKLWDARTL--ELIKTYV--T  231 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~--~~~~~~~--~  231 (305)
                      +++.+.||+|++|+.+++.. ++.-...  ....--.+.|.-+|+++++.+.|.    .|.+||..+.  .++.+..  .
T Consensus       735 ~AtVcKDg~~rVy~Prs~e~pv~Eg~gp--vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv  812 (1012)
T KOG1445|consen  735 IATVCKDGTLRVYEPRSREQPVYEGKGP--VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV  812 (1012)
T ss_pred             eeeeecCceEEEeCCCCCCCccccCCCC--ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc
Confidence            99999999999999987643 3222211  123344577888999988877654    5889988754  3444433  2


Q ss_pred             CCCeeEEEecCCCCcEEEee-CCcE
Q 021925          232 ERPVNAVTMSPLLDHVCIGE-PQTI  255 (305)
Q Consensus       232 ~~~v~~~~~~~~~~~l~~~~-~~~~  255 (305)
                      ...+.--.+.+|...|+..+ +|..
T Consensus       813 aps~LvP~YD~Ds~~lfltGKGD~~  837 (1012)
T KOG1445|consen  813 APSPLVPHYDYDSNVLFLTGKGDRF  837 (1012)
T ss_pred             cCccccccccCCCceEEEecCCCce
Confidence            22222334566766655544 4444

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.79  E-value=1.7e-17  Score=122.03  Aligned_cols=203  Identities=19%  Similarity=0.257  Sum_probs=151.6

Q ss_pred             ccccceEEEEEcCCCC-----EEEEeeCCCceEEEEcCCCe--e--eEE-----ecCCCcceEEEEEcC-CCcEEEEEeC
Q 021925            8 GHERPLTYLKYNKDGD-----LLFSCAKDHTPTVWFADNGE--R--LGT-----YRGHNGAVWCCDVSR-DSMTLITGSA   72 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~-----~l~s~~~dg~v~iw~~~~~~--~--~~~-----~~~~~~~v~~i~~~~-~~~~l~s~~~   72 (305)
                      .|.-+++.+.|.|+..     +|||++  ..+|+|.+...+  .  ...     -..+..++++..|+. +.++|.++|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            6888999999999763     455543  489999876322  1  111     124668999999998 7789999999


Q ss_pred             CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925           73 DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (305)
Q Consensus        73 dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (305)
                      |-+..|||++++..                                                 +.....+-.|+..|..+
T Consensus       172 DTTCTiWdie~~~~-------------------------------------------------~~vkTQLIAHDKEV~DI  202 (364)
T KOG0290|consen  172 DTTCTIWDIETGVS-------------------------------------------------GTVKTQLIAHDKEVYDI  202 (364)
T ss_pred             cCeEEEEEEeeccc-------------------------------------------------cceeeEEEecCcceeEE
Confidence            99999999997621                                                 01122356788999999


Q ss_pred             EEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCC-CeEEEEEcCCc-eEEEE
Q 021925          153 VWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLD-KSAKLWDARTL-ELIKT  228 (305)
Q Consensus       153 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-g~i~iwd~~~~-~~~~~  228 (305)
                      +|...+ +.+|+.+.||.+|++|++..+....+.+......+...++|++ |-+++|+-..| ..|.|.|++.. .++..
T Consensus       203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~  282 (364)
T KOG0290|consen  203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR  282 (364)
T ss_pred             EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence            999866 6889999999999999998766555554444467888999998 45678876665 46999999864 66777


Q ss_pred             Ee-eCCCeeEEEecCCCC-cEEEeeCCcEEEEEEe
Q 021925          229 YV-TERPVNAVTMSPLLD-HVCIGEPQTIKFMLLV  261 (305)
Q Consensus       229 ~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~  261 (305)
                      ++ |...|+.++|.|... .|++|++|.....+.+
T Consensus       283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl  317 (364)
T KOG0290|consen  283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDL  317 (364)
T ss_pred             hhcCcccccceEecCCCCceeeecCCcceEEEEec
Confidence            77 999999999999765 5777777766443333

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.79  E-value=1e-16  Score=117.87  Aligned_cols=156  Identities=19%  Similarity=0.339  Sum_probs=112.2

Q ss_pred             EEEEEcCCCCEEEEeeC----------CCceEEEEcCC-CeeeEEecC-CCcceEEEEEcCCCcEEEEE--eCCCcEEEE
Q 021925           14 TYLKYNKDGDLLFSCAK----------DHTPTVWFADN-GERLGTYRG-HNGAVWCCDVSRDSMTLITG--SADQTAKLW   79 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~~----------dg~v~iw~~~~-~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~--~~dg~v~vw   79 (305)
                      ..+.|+|+|++|+.-..          -|...+|.++. +.....+.- ..++|.+++|+|+|+.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            36889999998775433          13455665532 233444432 34579999999999887554  457899999


Q ss_pred             ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (305)
Q Consensus        80 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (305)
                      |++ ++.+..+                                                      +...++.+.|+|+|+
T Consensus        89 d~~-~~~i~~~------------------------------------------------------~~~~~n~i~wsP~G~  113 (194)
T PF08662_consen   89 DVK-GKKIFSF------------------------------------------------------GTQPRNTISWSPDGR  113 (194)
T ss_pred             cCc-ccEeEee------------------------------------------------------cCCCceEEEECCCCC
Confidence            985 3333222                                                      234566799999999


Q ss_pred             EEEEeeC---CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC------CCeEEEEEcCCceEEEEEe
Q 021925          160 TIISAGE---DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       160 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~  230 (305)
                      ++++++.   .|.|.+||.++.+.+....    |. .++.++|+|+|++|++++.      |+.++||+.. |+.+....
T Consensus       114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE----HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             EEEEEEccCCCcEEEEEECCCCEEeeccc----cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            9998874   4779999999888887764    33 4789999999999998875      7889999985 66665543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.78  E-value=8.8e-17  Score=120.45  Aligned_cols=249  Identities=16%  Similarity=0.228  Sum_probs=175.6

Q ss_pred             cceEEEEEcCCCCEEEE-eeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeE
Q 021925           11 RPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      +.|.-+.|..|..+++. ...|+.|.+|++...+-...+.....++.+++|+|||+.| .+...|-.|.+|.+.+.+...
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            44667788887766554 4678899999999999888898888999999999999655 455669999999999887776


Q ss_pred             EEeeCCCceEEEEecCCceEEEeCCcce----ee-------------eeeEEEEEeecccCCCCCceEEE----------
Q 021925           89 TFNFDSPARSVDFAVGDKLAVITTDPFM----EL-------------NSAIHVKRIARDPADQGGESVLI----------  141 (305)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~-------------~~~~~~~~~~~~~~~~~~~~~~~----------  141 (305)
                      .-..+..+..++|+|++++.++.+....    .+             ...+....+...+   .+..+..          
T Consensus       129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP---dg~~laVwd~~Leykv~  205 (447)
T KOG4497|consen  129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP---DGNWLAVWDNVLEYKVY  205 (447)
T ss_pred             ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC---CCcEEEEecchhhheee
Confidence            6667777899999999999998765200    00             0011111111111   1111111          


Q ss_pred             EeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeecc-----------------------------------
Q 021925          142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-----------------------------------  186 (305)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------------------------------  186 (305)
                      .....-.+..+.|+|.+++|+.|+.|+.+++.+--+.+....+-.                                   
T Consensus       206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~  285 (447)
T KOG4497|consen  206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE  285 (447)
T ss_pred             eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence            111234678899999999999999999999876544332211100                                   


Q ss_pred             ----------------------------ccCCccceEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceEEEEEeeCCCee
Q 021925          187 ----------------------------ETGHKKTITSLAKAADGSHFLTGSL--DKSAKLWDARTLELIKTYVTERPVN  236 (305)
Q Consensus       187 ----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~v~  236 (305)
                                                  .......+..++|++|..++++-..  -+.+.+||++..+....+....+|.
T Consensus       286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pir  365 (447)
T KOG4497|consen  286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIR  365 (447)
T ss_pred             cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcccee
Confidence                                        0112345778999999999888764  3679999999888877777888999


Q ss_pred             EEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      ...|+|....|+++.+...     ++.|...
T Consensus       366 af~WdP~~prL~vctg~sr-----LY~W~ps  391 (447)
T KOG4497|consen  366 AFEWDPGRPRLVVCTGKSR-----LYFWAPS  391 (447)
T ss_pred             EEEeCCCCceEEEEcCCce-----EEEEcCC
Confidence            9999999998888866554     5555443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=2.1e-17  Score=127.27  Aligned_cols=198  Identities=18%  Similarity=0.170  Sum_probs=141.9

Q ss_pred             EEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC
Q 021925           56 WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ  134 (305)
Q Consensus        56 ~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (305)
                      ..++|+++|..+++++.||++|||+..+...+... .+...|.++.|+|+++.++..+.+      ...+|+........
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d------~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD------SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC------ceEEEEeccCchhh
Confidence            67899999999999999999999997766655444 489999999999999999988764      34455544321111


Q ss_pred             CCceEEEEeccCCCeeEEEEcCCC---CEE--EEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEE
Q 021925          135 GGESVLILKGPQGRINRAVWGPLN---RTI--ISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFL  207 (305)
Q Consensus       135 ~~~~~~~~~~~~~~i~~~~~~~~~---~~l--~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~  207 (305)
                      ...+    ...+.....+.|+.++   .+.  +....-+.|+.||+...+-  .-...........|++++.+++|++++
T Consensus       222 ~~t~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A  297 (398)
T KOG0771|consen  222 RKTP----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA  297 (398)
T ss_pred             hcCC----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence            1010    1223345556777666   222  2333456777777654322  111111113456899999999999999


Q ss_pred             EEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925          208 TGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL  263 (305)
Q Consensus       208 ~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (305)
                      .|+.||.|.|++..+.+.++-.+  |...|+.+.|+|+.++++.-+.+....+..+.+
T Consensus       298 lGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  298 LGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99999999999999999988877  888999999999999999877776655555544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=5.4e-16  Score=128.76  Aligned_cols=224  Identities=14%  Similarity=0.077  Sum_probs=146.5

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEE
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLW   79 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vw   79 (305)
                      ..+..+.+.+.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+...+|+|||+.|+ +.+.+|...||
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  267 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY  267 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence            4455778889999999999999887643   359999998887543 333445667899999998886 56778877776


Q ss_pred             e--cCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           80 N--VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        80 d--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      .  +.++................|+|+++.++..++..    +...++.+...    .+. ...+..........+|+|+
T Consensus       268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~----g~~~Iy~~~~~----~g~-~~~lt~~g~~~~~~~~SpD  338 (427)
T PRK02889        268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG----GAPQIYRMPAS----GGA-AQRVTFTGSYNTSPRISPD  338 (427)
T ss_pred             EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCC----CCcEEEEEECC----CCc-eEEEecCCCCcCceEECCC
Confidence            5  44444322222344556789999999887765421    12233433211    111 1222222233446789999


Q ss_pred             CCEEEEeeCCC---cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceEEEEEe-
Q 021925          158 NRTIISAGEDA---IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV-  230 (305)
Q Consensus       158 ~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~-  230 (305)
                      |++|+..+.++   .|.+||+.+++... +.    .........|+|||+.|+.++.++   .+.+.++ +++....+. 
T Consensus       339 G~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt----~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~  412 (427)
T PRK02889        339 GKLLAYISRVGGAFKLYVQDLATGQVTA-LT----DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSV  412 (427)
T ss_pred             CCEEEEEEccCCcEEEEEEECCCCCeEE-cc----CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeec
Confidence            99998777654   69999998876543 32    112335679999999988777544   3666666 455555554 


Q ss_pred             eCCCeeEEEecCC
Q 021925          231 TERPVNAVTMSPL  243 (305)
Q Consensus       231 ~~~~v~~~~~~~~  243 (305)
                      ....+...+|+|-
T Consensus       413 ~~g~~~~p~wsp~  425 (427)
T PRK02889        413 QGGDVREPSWGPF  425 (427)
T ss_pred             CCCCCCCCccCCC
Confidence            4566788888874

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=1.7e-16  Score=135.35  Aligned_cols=248  Identities=17%  Similarity=0.202  Sum_probs=170.0

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCC---CcceEEEEEcC--CCcEEEEEeCCCcEEEEec
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH---NGAVWCCDVSR--DSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~---~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd~   81 (305)
                      .+..++-..+.|+|-...++++...-.|++||.+.++.+..+..+   ...|+.+.+..  |..++++|+.||.|+||+-
T Consensus      1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred             hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence            344456778899998889999987889999999999988877644   35799999876  5568999999999999963


Q ss_pred             -C----CCCeeEEEe--------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC
Q 021925           82 -E----TGAQLFTFN--------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR  148 (305)
Q Consensus        82 -~----~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (305)
                       .    +.+.+..+.        ..+.-.-+.|......++++++     ...+++|+.....     .......+....
T Consensus      1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-----~r~IRIWDa~~E~-----~~~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-----VRSIRIWDAHKEQ-----VVADIPYGSSTL 1210 (1387)
T ss_pred             cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-----eeEEEEEecccce-----eEeecccCCCcc
Confidence             2    223333322        1111234556665555555554     4566777765422     112222334556


Q ss_pred             eeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccc--eEEEEEcCCCCE-EEEEeCCCeEEEEEcCCce
Q 021925          149 INRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT--ITSLAKAADGSH-FLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       149 i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~  224 (305)
                      ++++.-+. .|+.+++|..||.|++||.+...+-..+.....|...  |..+.+.++|-- |++|+.||.|++||++...
T Consensus      1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred             ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence            67766554 3689999999999999999875442222222256665  999999987654 9999999999999999742


Q ss_pred             EEEE--Ee----eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925          225 LIKT--YV----TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDI  270 (305)
Q Consensus       225 ~~~~--~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  270 (305)
                      ....  +.    .++..+++..+++.+.+|+|+...      +++|++..+.
T Consensus      1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~------ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQL------IKIYSLSGEQ 1336 (1387)
T ss_pred             ccccceeeeccccCccceeeeeccCCCeeeecCcce------EEEEecChhh
Confidence            2221  11    245699999999999999998833      5556554443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.77  E-value=1.5e-17  Score=131.89  Aligned_cols=196  Identities=17%  Similarity=0.170  Sum_probs=140.1

Q ss_pred             CCCCEEEEeeCCCceEEEEcCCCeeeEEec----CCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCCCeeEEEeeCC
Q 021925           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYR----GHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDS   94 (305)
Q Consensus        20 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~----~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~   94 (305)
                      |++--++.|-.-|.|.+.|....+..+.+.    -.+..|+++.|-|. ...++.+-.+|.+.++|.+-       ....
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~  255 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGA  255 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccC
Confidence            455567777778888888866532222121    13478999999994 45666777899999998721       1111


Q ss_pred             CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q 021925           95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD  174 (305)
Q Consensus        95 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  174 (305)
                      ...+....+++..+.+......                 ....++..+.--.+.|...+|+|||++||+.++||.++|+|
T Consensus       256 t~p~~~~~k~~~~f~i~t~ksk-----------------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~  318 (636)
T KOG2394|consen  256 TAPSYQALKDGDQFAILTSKSK-----------------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFD  318 (636)
T ss_pred             CCCcccccCCCCeeEEeeeecc-----------------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEee
Confidence            1112222233333333221000                 01134444555566899999999999999999999999999


Q ss_pred             CCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925          175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (305)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~  242 (305)
                      ..+.+.+..++   ..-+...|++|+|||++|++|++|.-|.||.+...+.+..-. |.+.|+.|+|.|
T Consensus       319 fdt~eLlg~mk---SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  319 FDTQELLGVMK---SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccHHHHHHHHH---hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            99888776665   456789999999999999999999999999999999998877 999999999995

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.76  E-value=1e-16  Score=117.88  Aligned_cols=159  Identities=13%  Similarity=0.215  Sum_probs=111.5

Q ss_pred             eEEEEecCCceEEEeCCc-----ceeeeeeEEEEEeecccCCCCCceEEEEec-cCCCeeEEEEcCCCCEEEEe--eCCC
Q 021925           97 RSVDFAVGDKLAVITTDP-----FMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGPLNRTIISA--GEDA  168 (305)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg  168 (305)
                      ..+.|++.|..+++....     .....+...++.+..     ...+...+.- ..++|.+++|+|+++.+++.  ..++
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~-----~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~   83 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE-----KNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPA   83 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEec-----CCCccceeeccCCCceEEEEECcCCCEEEEEEccCCc
Confidence            467788888877776541     112223334444422     1223333332 34579999999999987654  4678


Q ss_pred             cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC---CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC
Q 021925          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD  245 (305)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  245 (305)
                      .|.+||++ ++.+..+.     ...++.+.|+|+|++|++++.   .|.|.+||.++.+.+....+.. +..++|+|+|+
T Consensus        84 ~v~lyd~~-~~~i~~~~-----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr  156 (194)
T PF08662_consen   84 KVTLYDVK-GKKIFSFG-----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGR  156 (194)
T ss_pred             ccEEEcCc-ccEeEeec-----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCC
Confidence            99999997 66666663     457788999999999999875   4679999999999998887665 68999999999


Q ss_pred             cEEEeeCC-cEEEEEEeehhhhh
Q 021925          246 HVCIGEPQ-TIKFMLLVYLFVLF  267 (305)
Q Consensus       246 ~l~~~~~~-~~~~~~~~~~~~~~  267 (305)
                      ++++++.. .......+++|+..
T Consensus       157 ~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  157 YLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEEEEEeccceeccccEEEEEec
Confidence            99998653 33333446666654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1.6e-16  Score=135.51  Aligned_cols=235  Identities=13%  Similarity=0.201  Sum_probs=164.6

Q ss_pred             cceEEEEEcC--CCCEEEEeeCCCceEEEEcC-C----CeeeEEec---C----CCcceEEEEEcCCCcEEEEEeCCCcE
Q 021925           11 RPLTYLKYNK--DGDLLFSCAKDHTPTVWFAD-N----GERLGTYR---G----HNGAVWCCDVSRDSMTLITGSADQTA   76 (305)
Q Consensus        11 ~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~-~----~~~~~~~~---~----~~~~v~~i~~~~~~~~l~s~~~dg~v   76 (305)
                      ..|+.+.+-.  |..++++|+.||.|+||+-- +    .+.+....   +    -.+.=.-++|.....+|+++|.-..|
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            4578888755  45689999999999999532 2    22332222   1    11222456787766677777777899


Q ss_pred             EEEecCCCCeeEEEeeCC--CceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC--eeE
Q 021925           77 KLWNVETGAQLFTFNFDS--PARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR--INR  151 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~~--~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~  151 (305)
                      +|||......+..+....  .++++.-.- .++.++++..     ++.+++++.+.....   ..+...+.|...  |..
T Consensus      1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa-----DGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFA-----DGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred             EEEecccceeEeecccCCCccceeecccccCCceEEEeec-----CCceEEeecccCCcc---ccceeecccCCccccee
Confidence            999999988888877443  444444332 3566666654     666777776654332   466777888877  999


Q ss_pred             EEEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCC---ccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925          152 AVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGH---KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (305)
Q Consensus       152 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  227 (305)
                      +.+.++| ..|++|+.||.|++||++... ...+.....|   .+..+++..+++...+|+|+. +.|+||++. |+.+.
T Consensus      1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~ 1338 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLN 1338 (1387)
T ss_pred             EEeecCCCcceeeeccCCeEEEEecccCc-ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhc
Confidence            9999877 469999999999999999752 2222111122   235999999999999999998 999999986 44444


Q ss_pred             EEe--------eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          228 TYV--------TERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       228 ~~~--------~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      .++        ....+.|++|+|..-++++|+.|...
T Consensus      1339 ~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred             ccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence            443        22457999999999899999777764

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=1.1e-15  Score=126.98  Aligned_cols=210  Identities=13%  Similarity=0.100  Sum_probs=139.3

Q ss_pred             CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceE
Q 021925           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (305)
Q Consensus        32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  108 (305)
                      ..|.++|. ++.....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.......+.......|+|+++.+
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            35667775 355555566678889999999999999877643   35999999988765544456667789999999887


Q ss_pred             EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeC--CCCcEeeeec
Q 021925          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDT--ETGKLLKESD  185 (305)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~  185 (305)
                      +.....    .+...++.+...     ......+..+........|+|||+.|+..+. +|...+|.+  .+++......
T Consensus       255 a~~~~~----~g~~~Iy~~d~~-----~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~  325 (427)
T PRK02889        255 AVALSR----DGNSQIYTVNAD-----GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF  325 (427)
T ss_pred             EEEEcc----CCCceEEEEECC-----CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec
Confidence            754321    122334433221     1123344445555677899999998886654 455566654  4444322221


Q ss_pred             cccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          186 KETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                          ........+|+|||++|+..+.++   .|++||+.+++... +..........|+|+|+.|+.++.++..
T Consensus       326 ----~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~g~  394 (427)
T PRK02889        326 ----TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQGGR  394 (427)
T ss_pred             ----CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecCCC
Confidence                122334578999999998777654   69999998876543 3333345778999999999888765543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=1.7e-15  Score=115.09  Aligned_cols=194  Identities=11%  Similarity=0.172  Sum_probs=145.6

Q ss_pred             eEEEEEcCCCCEEEEeeCC--CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           13 LTYLKYNKDGDLLFSCAKD--HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~d--g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      |--+-|+.  .++|..+.+  ..+++.+...+..+..+. ...+|.++.++.+  +|+++-.+ .|.|||+++.+.+.++
T Consensus        49 IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI  122 (391)
T KOG2110|consen   49 IVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTI  122 (391)
T ss_pred             EEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhh
Confidence            33444543  345554443  358888888777777766 5678999999644  67766664 5999999999999988


Q ss_pred             ee--CCC--ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925           91 NF--DSP--ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (305)
Q Consensus        91 ~~--~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  166 (305)
                      ..  +.+  +..+.+++.+.+++.-+...   .+.+.+++..      ..+++..+..|++.+.+++|+++|.+||++++
T Consensus       123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t---~GdV~l~d~~------nl~~v~~I~aH~~~lAalafs~~G~llATASe  193 (391)
T KOG2110|consen  123 ETTPPNPKGLCALSPNNANCYLAYPGSTT---SGDVVLFDTI------NLQPVNTINAHKGPLAALAFSPDGTLLATASE  193 (391)
T ss_pred             hccCCCccceEeeccCCCCceEEecCCCC---CceEEEEEcc------cceeeeEEEecCCceeEEEECCCCCEEEEecc
Confidence            72  233  34444444555776654322   4556666654      34677888999999999999999999999999


Q ss_pred             CCc-EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          167 DAI-VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       167 dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      .|+ ||++.+.+|+.+.+++... ....|.+++|+|++++|++.|..++|.++.++.
T Consensus       194 KGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  194 KGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            886 7899999999999997432 256789999999999999999999999998764

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.76  E-value=1.6e-16  Score=116.98  Aligned_cols=202  Identities=16%  Similarity=0.225  Sum_probs=157.1

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee-eEEec-----CCCcceEEEEEcC--CCcEEEEEeCCCcEEEE
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-LGTYR-----GHNGAVWCCDVSR--DSMTLITGSADQTAKLW   79 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~-~~~~~-----~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vw   79 (305)
                      .|-+.|.|+.|.|++..+++-. |..|.+|+++++.. +..+.     +|....++-+|+|  +++.+++. .|+++..|
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~  198 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW  198 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence            4556899999999999998766 88999999987655 33332     3566788889999  78888775 46899999


Q ss_pred             ecCCCCeeEEEe--eCCCceEEEEecCCceEEE-eCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           80 NVETGAQLFTFN--FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        80 d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      |+++.++...+.  +...++.+.|+|+...+++ +++     ++.+++|+.+.     ...++..+.+|...+.++.|+|
T Consensus       199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gD-----dgyvriWD~R~-----tk~pv~el~~HsHWvW~VRfn~  268 (370)
T KOG1007|consen  199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGD-----DGYVRIWDTRK-----TKFPVQELPGHSHWVWAVRFNP  268 (370)
T ss_pred             EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCC-----CccEEEEeccC-----CCccccccCCCceEEEEEEecC
Confidence            999998888887  7888999999998765554 444     66788888874     3467888999999999999999


Q ss_pred             CC-CEEEEeeCCCcEEEEeCCCCcE------------------------e--eeeccccCCccceEEEEEcCCCC-EEEE
Q 021925          157 LN-RTIISAGEDAIVRIWDTETGKL------------------------L--KESDKETGHKKTITSLAKAADGS-HFLT  208 (305)
Q Consensus       157 ~~-~~l~~~~~dg~i~iwd~~~~~~------------------------~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~  208 (305)
                      .. +++++|+.|..|.+|....-..                        +  ..+.....|+..|.+++|+.-.. .+|+
T Consensus       269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS  348 (370)
T KOG1007|consen  269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS  348 (370)
T ss_pred             ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence            75 6778999999999997643110                        0  01112336889999999998555 4788


Q ss_pred             EeCCCeEEEEEcC
Q 021925          209 GSLDKSAKLWDAR  221 (305)
Q Consensus       209 ~~~dg~i~iwd~~  221 (305)
                      -+.||++.|=.+.
T Consensus       349 LSYDGRviIs~V~  361 (370)
T KOG1007|consen  349 LSYDGRVIISSVP  361 (370)
T ss_pred             eccCceEEeecCC
Confidence            9999999886654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.76  E-value=2.3e-17  Score=130.92  Aligned_cols=136  Identities=21%  Similarity=0.357  Sum_probs=108.6

Q ss_pred             ccceEEEEEcCC-CCEEEEeeCCCceEEEEcCC--------------Ce--------------eeEEecCCCcceEEEEE
Q 021925           10 ERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADN--------------GE--------------RLGTYRGHNGAVWCCDV   60 (305)
Q Consensus        10 ~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~--------------~~--------------~~~~~~~~~~~v~~i~~   60 (305)
                      +..|+|++|-|. ...++++-.+|.++++|.+-              +.              ++..+.--.+.|..++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            367999999994 44666677899999997531              11              11112223468899999


Q ss_pred             cCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE
Q 021925           61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL  140 (305)
Q Consensus        61 ~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (305)
                      +|||++||+.+.||.++|+|..+.+.+..                                                   
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~---------------------------------------------------  327 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGV---------------------------------------------------  327 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHH---------------------------------------------------
Confidence            99999999999999999999987655432                                                   


Q ss_pred             EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc
Q 021925          141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA  200 (305)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  200 (305)
                       ++..-+...|++|||||++|++|++|.-|.||.+..++.+..-+   +|...|+.++|+
T Consensus       328 -mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq---GHkSWVs~VaFD  383 (636)
T KOG2394|consen  328 -MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ---GHKSWVSVVAFD  383 (636)
T ss_pred             -HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc---ccccceeeEeec
Confidence             23334667899999999999999999999999999999988887   899999999998

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.8e-15  Score=126.23  Aligned_cols=207  Identities=10%  Similarity=0.046  Sum_probs=142.6

Q ss_pred             CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC---CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceE
Q 021925           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (305)
Q Consensus        32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  108 (305)
                      ..|.++|.+ +...+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.......+..+....|+|+++.+
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence            378888875 4555667778889999999999998887764   468999999988765544466677889999999877


Q ss_pred             EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeec
Q 021925          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESD  185 (305)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~  185 (305)
                      +.....    .+...++.+...     ......+..+........|+|||+.|+..+. +|  .|+++|+..++.. .+.
T Consensus       261 a~~~~~----~g~~~Iy~~d~~-----~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt  330 (435)
T PRK05137        261 VMSLSQ----GGNTDIYTMDLR-----SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RIS  330 (435)
T ss_pred             EEEEec----CCCceEEEEECC-----CCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eee
Confidence            654321    112222222211     1223445556666778999999998887664 33  6888898766543 332


Q ss_pred             cccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCC
Q 021925          186 KETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  253 (305)
                         .+...+....|+|+|+.|+..+.+   ..|.+||+.++. ...+.....+..+.|+|||+.|+..+.+
T Consensus       331 ---~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        331 ---FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             ---cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEcc
Confidence               234456678899999999876643   368889986544 3344444457789999999998876543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.75  E-value=7.7e-17  Score=120.38  Aligned_cols=188  Identities=20%  Similarity=0.260  Sum_probs=144.8

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEc-CCCeeeE--E-e----cCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFA-DNGERLG--T-Y----RGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~-~~~~~~~--~-~----~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      -.+++|+|||.+|++|- ...|+++|+ +.|+...  . +    .+..+-+.+++|+| +.+.++.++...++-|+.-..
T Consensus       161 AhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~  239 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG  239 (406)
T ss_pred             heeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence            45799999999999764 679999998 4443221  1 1    12367899999999 667999999999999998888


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC-eeE--EEEcCCCC
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR-INR--AVWGPLNR  159 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~--~~~~~~~~  159 (305)
                      +.++..+. +.+.|+.+.|.++|+.++++..    ....+..|+++..     ..++..+..|.+. =..  ....|+++
T Consensus       240 ~~pl~llggh~gGvThL~~~edGn~lfsGaR----k~dkIl~WDiR~~-----~~pv~~L~rhv~~TNQRI~FDld~~~~  310 (406)
T KOG2919|consen  240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR----KDDKILCWDIRYS-----RDPVYALERHVGDTNQRILFDLDPKGE  310 (406)
T ss_pred             CCceeeecccCCCeeeEEeccCcCeeccccc----CCCeEEEEeehhc-----cchhhhhhhhccCccceEEEecCCCCc
Confidence            88777766 8899999999999999988764    3456667777643     3455556666542 222  44568899


Q ss_pred             EEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC
Q 021925          160 TIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK  213 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  213 (305)
                      +|++|+.||.|++||++. +..+..+.   .+...++.++++|--.++++++...
T Consensus       311 ~LasG~tdG~V~vwdlk~~gn~~sv~~---~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  311 ILASGDTDGSVRVWDLKDLGNEVSVTG---NYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             eeeccCCCccEEEEecCCCCCcccccc---cccccccceecCcccceeeeccCce
Confidence            999999999999999998 66566665   6889999999999988888877553

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=5.4e-15  Score=122.72  Aligned_cols=209  Identities=11%  Similarity=0.031  Sum_probs=140.0

Q ss_pred             ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC---CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEE
Q 021925           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV  109 (305)
Q Consensus        33 ~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  109 (305)
                      .|.++|.+.... +.+..+...+...+|+|||+.|+..+.   +..|.+|++.+++.......+.......|+|+++.++
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence            688888765443 445556778999999999998886542   4579999998887655445556667899999999888


Q ss_pred             EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC-C--cEEEEeCCCCcEeeeecc
Q 021925          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED-A--IVRIWDTETGKLLKESDK  186 (305)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~  186 (305)
                      .......  ...+.++++.      .+ ....+..+...+....|+|+|+.|+..+.+ +  .|+++|+.+++.. .+. 
T Consensus       259 ~~~~~~g--~~~I~~~d~~------tg-~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt-  327 (429)
T PRK03629        259 FALSKTG--SLNLYVMDLA------SG-QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT-  327 (429)
T ss_pred             EEEcCCC--CcEEEEEECC------CC-CEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee-
Confidence            6533110  1123333332      11 233344445567889999999988877654 4  4555577666543 332 


Q ss_pred             ccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          187 ETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                        ..........|+|||+.|+..+.+   ..|.+||+.+++.. .+..........|+|||+.|+.++.++..
T Consensus       328 --~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~  397 (429)
T PRK03629        328 --WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMG  397 (429)
T ss_pred             --cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCc
Confidence              233345678899999998876643   35889999887643 33322234578899999999998877653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.75  E-value=1.5e-14  Score=116.70  Aligned_cols=218  Identities=13%  Similarity=0.152  Sum_probs=143.0

Q ss_pred             EEeeCCCceEEEEcCC-Ce--eeEEecCCCcceEEEEEcCCCcEEEEEe-CCCcEEEEecCC-CCe--eEEEeeCCCceE
Q 021925           26 FSCAKDHTPTVWFADN-GE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVET-GAQ--LFTFNFDSPARS   98 (305)
Q Consensus        26 ~s~~~dg~v~iw~~~~-~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~v~vwd~~~-~~~--~~~~~~~~~v~~   98 (305)
                      ++...++.|.+|++.+ ++  .+..+. +.+....++++|++++|++++ .++.|.+|+++. ++.  ............
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            3446789999999964 33  445554 345678899999999887664 488899999973 332  223334556788


Q ss_pred             EEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 021925           99 VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTET  177 (305)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  177 (305)
                      ++++|+++.++++...    .+.+.++++.....  ..+...... +......++++|+++++++++ .++.|.+||+.+
T Consensus        85 i~~~~~g~~l~v~~~~----~~~v~v~~~~~~g~--~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         85 ISTDHQGRFLFSASYN----ANCVSVSPLDKDGI--PVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             EEECCCCCEEEEEEcC----CCeEEEEEECCCCC--CCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            9999999988887532    34455555532111  111222222 223467788999999887655 569999999986


Q ss_pred             CcEeee-----eccccCCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCC--c--eEEEEEe-eC------CCeeEEEe
Q 021925          178 GKLLKE-----SDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDART--L--ELIKTYV-TE------RPVNAVTM  240 (305)
Q Consensus       178 ~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~--~~~~~~~-~~------~~v~~~~~  240 (305)
                      ...+..     ...  ........++|+|+|++++++.. +++|.+||+..  +  +.+..+. .+      .....+.+
T Consensus       158 ~g~l~~~~~~~~~~--~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~  235 (330)
T PRK11028        158 DGHLVAQEPAEVTT--VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI  235 (330)
T ss_pred             CCcccccCCCceec--CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence            332221     111  12344678999999999988876 89999999973  2  3333332 11      12235889


Q ss_pred             cCCCCcEEEeeCC
Q 021925          241 SPLLDHVCIGEPQ  253 (305)
Q Consensus       241 ~~~~~~l~~~~~~  253 (305)
                      +|++++++++...
T Consensus       236 ~pdg~~lyv~~~~  248 (330)
T PRK11028        236 TPDGRHLYACDRT  248 (330)
T ss_pred             CCCCCEEEEecCC
Confidence            9999999998553

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.9e-15  Score=107.87  Aligned_cols=186  Identities=11%  Similarity=0.132  Sum_probs=134.5

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   91 (305)
                      .|++|...|..+-++.++.|+.++-||+++|+..+++++|++.|.++.--.....+++|+.||++++||.++++.+..+.
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence            58999999977777777789999999999999999999999999999885555579999999999999999999988775


Q ss_pred             eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC-CeeEEEEcCCCCEEEEeeCCCcE
Q 021925           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-RINRAVWGPLNRTIISAGEDAIV  170 (305)
Q Consensus        92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i  170 (305)
                      ......                                           .++.|-+ .|-+++.+  ..++++|+ ...+
T Consensus       196 ~yk~~~-------------------------------------------~lRp~~g~wigala~~--edWlvCGg-Gp~l  229 (325)
T KOG0649|consen  196 PYKNPN-------------------------------------------LLRPDWGKWIGALAVN--EDWLVCGG-GPKL  229 (325)
T ss_pred             cccChh-------------------------------------------hcCcccCceeEEEecc--CceEEecC-CCce
Confidence            221111                                           1122222 24444443  55676665 4679


Q ss_pred             EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEE
Q 021925          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCI  249 (305)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  249 (305)
                      .+|.++..++...+.    -..++..+.|..+  .+++++..+.|.-|.+. |..-.... ......+..|+.+--.+++
T Consensus       230 slwhLrsse~t~vfp----ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s  302 (325)
T KOG0649|consen  230 SLWHLRSSESTCVFP----IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFIS  302 (325)
T ss_pred             eEEeccCCCceEEEe----cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEE
Confidence            999999999888885    5677888888755  67888888889999875 44434343 2233455555543333333


Q ss_pred             e
Q 021925          250 G  250 (305)
Q Consensus       250 ~  250 (305)
                      .
T Consensus       303 ~  303 (325)
T KOG0649|consen  303 I  303 (325)
T ss_pred             e
Confidence            3

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.73  E-value=1.4e-15  Score=126.44  Aligned_cols=227  Identities=13%  Similarity=0.108  Sum_probs=155.0

Q ss_pred             CceEEEEcCCC-eeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCe--eEE-----EeeCCCceEEEEe
Q 021925           32 HTPTVWFADNG-ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQ--LFT-----FNFDSPARSVDFA  102 (305)
Q Consensus        32 g~v~iw~~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~--~~~-----~~~~~~v~~~~~~  102 (305)
                      +.+.+|++.+. .+...+. -...|++++|+| +..+++.|..+|+|.+||++.+..  ...     ..+..++..+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            47899999876 4444444 577899999999 667888889999999999987765  222     2277888888887


Q ss_pred             cCCc---eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe------ccCCCeeEEEEcCCC-CEEEEeeCCCcEEE
Q 021925          103 VGDK---LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK------GPQGRINRAVWGPLN-RTIISAGEDAIVRI  172 (305)
Q Consensus       103 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i  172 (305)
                      .+..   ++.++.      ++.+..|.+................      .....+++++|.|.. ..++.|+++|.|.-
T Consensus       301 ~~~~~~~f~s~ss------DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~  374 (555)
T KOG1587|consen  301 QNEHNTEFFSLSS------DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK  374 (555)
T ss_pred             ccCCCCceEEEec------CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence            6433   344444      4555555554333222211111111      234467889998865 67889999999887


Q ss_pred             EeCCCCcEee-----eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC-CceEEEEEe-eCCCeeEEEecCCCC
Q 021925          173 WDTETGKLLK-----ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TLELIKTYV-TERPVNAVTMSPLLD  245 (305)
Q Consensus       173 wd~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~  245 (305)
                      -+....+.-.     .......|.++|+++.++|-+..++..+.|.+++||... ...++..+. +...+.+++|||...
T Consensus       375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp  454 (555)
T KOG1587|consen  375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP  454 (555)
T ss_pred             EeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc
Confidence            4433222111     111233688999999999977666555559999999988 677777776 556699999999998


Q ss_pred             cEEEeeC-CcEEEEEEeehhhhhhhh
Q 021925          246 HVCIGEP-QTIKFMLLVYLFVLFLDI  270 (305)
Q Consensus       246 ~l~~~~~-~~~~~~~~~~~~~~~~~~  270 (305)
                      .+++..+ +|.     +.+|++..+.
T Consensus       455 avF~~~d~~G~-----l~iWDLl~~~  475 (555)
T KOG1587|consen  455 AVFATVDGDGN-----LDIWDLLQDD  475 (555)
T ss_pred             eEEEEEcCCCc-----eehhhhhccc
Confidence            7666655 554     8888886543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=2.1e-15  Score=125.66  Aligned_cols=208  Identities=14%  Similarity=0.074  Sum_probs=140.0

Q ss_pred             CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceE
Q 021925           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (305)
Q Consensus        32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  108 (305)
                      ..|.+||.. +...+.+..+...+.+.+|+|||+.|+.++.+   ..|.+||+.+++.......+.......|+|+++.+
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence            368889975 44445566677889999999999999887643   46999999888765544455566688999999877


Q ss_pred             EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CCc--EEEEeCCCCcEeeeec
Q 021925          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAI--VRIWDTETGKLLKESD  185 (305)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~  185 (305)
                      +.......  ...+.++++..       .....+..+.......+|+|+|+.|+..+. +|.  |+++|+.+++..+...
T Consensus       263 ~~~~s~~g--~~~Iy~~d~~~-------g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~  333 (433)
T PRK04922        263 ALTLSRDG--NPEIYVMDLGS-------RQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF  333 (433)
T ss_pred             EEEEeCCC--CceEEEEECCC-------CCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec
Confidence            65432110  12233333321       123344455555677899999998887764 444  7777877665433221


Q ss_pred             cccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925          186 KETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                          +.......+|+|+|+.|+..+.++   .|.+||+.+++.. .+..........|+|+|+.++..+.++
T Consensus       334 ----~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~  400 (433)
T PRK04922        334 ----QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREG  400 (433)
T ss_pred             ----CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecC
Confidence                223345689999999988765443   6999999887755 343333456789999999988776543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=3.9e-14  Score=105.85  Aligned_cols=178  Identities=15%  Similarity=0.220  Sum_probs=131.5

Q ss_pred             CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC-CCCeeEEEeeCC-CceEEEEec--CCce
Q 021925           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE-TGAQLFTFNFDS-PARSVDFAV--GDKL  107 (305)
Q Consensus        32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~~~-~v~~~~~~~--~~~~  107 (305)
                      ..|.|||=...+++.++. ...+|.++.+.++  .|++.-. +.|.||... ..+.+..+.... +-.-++..|  +..+
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            479999966677777777 6789999999876  5666554 789999987 556666665322 222333344  3333


Q ss_pred             EEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc-EEEEeCCCCcEeeeecc
Q 021925          108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI-VRIWDTETGKLLKESDK  186 (305)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~  186 (305)
                      ++.-+.    ..+.+.+.++.....    .....+..|++.|.+++.+.+|..+|+++..|+ |||||..+++.+..++.
T Consensus       151 LafPg~----k~GqvQi~dL~~~~~----~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  151 LAFPGF----KTGQVQIVDLASTKP----NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR  222 (346)
T ss_pred             EEcCCC----ccceEEEEEhhhcCc----CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence            333221    124555555543321    145678899999999999999999999999986 78999999999999874


Q ss_pred             ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      .. ....|.+++|||++.+|+++|..|++.|+.++.
T Consensus       223 G~-d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  223 GV-DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CC-chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            32 346799999999999999999999999998875

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=8.1e-16  Score=116.66  Aligned_cols=200  Identities=11%  Similarity=0.142  Sum_probs=143.0

Q ss_pred             CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe--eCCCceEEEEecC-CceEEEeCCcceeeeeeEEEEEee
Q 021925           52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIA  128 (305)
Q Consensus        52 ~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  128 (305)
                      +..+..++|++.-..++++..|-.|++||-.. ++...++  ....+.+++|.|. ..-++++....+.++.........
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN  176 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc
Confidence            34678899999777789999999999999765 5555555  5678999999994 455666655444444332222222


Q ss_pred             cccCCCCCce--EEEEeccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCE
Q 021925          129 RDPADQGGES--VLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH  205 (305)
Q Consensus       129 ~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  205 (305)
                      +.........  +....+| .+|+++.|.+||..+++++- |..|.|||..++..+....   ...+.++-+.||||+.+
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~---~glgg~slLkwSPdgd~  252 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP---KGLGGFSLLKWSPDGDV  252 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc---cCCCceeeEEEcCCCCE
Confidence            2211111122  2333344 78999999999999998885 6789999999987766553   35678889999999999


Q ss_pred             EEEEeCCCeEEEEEcC-CceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          206 FLTGSLDKSAKLWDAR-TLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       206 l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      |++++-|+..++|+.. +....+-.-..+.|...+|+|+|+.|+.+....-+
T Consensus       253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~  304 (445)
T KOG2139|consen  253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR  304 (445)
T ss_pred             EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCce
Confidence            9999999999999544 44444444466689999999999987766544433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=2e-16  Score=114.92  Aligned_cols=162  Identities=16%  Similarity=0.224  Sum_probs=123.9

Q ss_pred             ccccceEEEEEcC-CCC--EEEEeeCCCceEEEEcCCCeeeE----------EecCCCcceEEEEEcCCCcEEEEEeCCC
Q 021925            8 GHERPLTYLKYNK-DGD--LLFSCAKDHTPTVWFADNGERLG----------TYRGHNGAVWCCDVSRDSMTLITGSADQ   74 (305)
Q Consensus         8 ~h~~~v~~~~~~~-~~~--~l~s~~~dg~v~iw~~~~~~~~~----------~~~~~~~~v~~i~~~~~~~~l~s~~~dg   74 (305)
                      +..+.+.|..+.- +++  ++++|-++|.|.+||+.++..+.          ....|+.+|.++.+.+.-..=++|+.+.
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d  227 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD  227 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence            3456677777543 333  46678889999999999874332          3346899999999988555557888888


Q ss_pred             cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (305)
Q Consensus        75 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (305)
                      .+..|++........+.                                                ....-..-.+..+..
T Consensus       228 kl~~~Sl~~s~gslq~~------------------------------------------------~e~~lknpGv~gvrI  259 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQIR------------------------------------------------KEITLKNPGVSGVRI  259 (323)
T ss_pred             cceeeeeccccCccccc------------------------------------------------ceEEecCCCccceEE
Confidence            89999876331111000                                                001112234667888


Q ss_pred             cCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       155 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      -||++.+|+++.|+.||+|..++.+++..+.   -|...|++++|+|+...+|.++.|++|.+|++
T Consensus       260 RpD~KIlATAGWD~RiRVyswrtl~pLAVLk---yHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  260 RPDGKILATAGWDHRIRVYSWRTLNPLAVLK---YHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccCCcEEeecccCCcEEEEEeccCCchhhhh---hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999999999887   68999999999999999999999999999986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2e-16  Score=118.87  Aligned_cols=208  Identities=16%  Similarity=0.294  Sum_probs=149.3

Q ss_pred             EecccccceEEEEEcC--CCCEEEEeeCCCceEEEEcCCCeeeEEe--cCCC-cceEEEEEcCCCcEEEEEeC----CCc
Q 021925            5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGERLGTY--RGHN-GAVWCCDVSRDSMTLITGSA----DQT   75 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~~~~~~~~--~~~~-~~v~~i~~~~~~~~l~s~~~----dg~   75 (305)
                      .+++|...++.++|..  ....+.+|+.||+|++||++.......+  .++. .+..+++...+++.+++|..    |-.
T Consensus        65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~  144 (376)
T KOG1188|consen   65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDAS  144 (376)
T ss_pred             eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceE
Confidence            4678889999999977  4568999999999999999986654443  4455 46677777667777777754    677


Q ss_pred             EEEEecCCCCe-eEEEe--eCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925           76 AKLWNVETGAQ-LFTFN--FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (305)
Q Consensus        76 v~vwd~~~~~~-~~~~~--~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (305)
                      |.+||++..+. +..+.  |...|+++.|+|.. +++++++-     ++-+.+.++....   ....+...-.+...|.+
T Consensus       145 v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSv-----DGLvnlfD~~~d~---EeDaL~~viN~~sSI~~  216 (376)
T KOG1188|consen  145 VVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSV-----DGLVNLFDTKKDN---EEDALLHVINHGSSIHL  216 (376)
T ss_pred             EEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecc-----cceEEeeecCCCc---chhhHHHhhcccceeee
Confidence            99999998876 55554  88999999999965 45555543     5556666665442   22333334456777888


Q ss_pred             EEEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeecc--------------------------------------------
Q 021925          152 AVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDK--------------------------------------------  186 (305)
Q Consensus       152 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------------------------  186 (305)
                      +.|..++ +.|.+-+..+...+|+++.+.+...+..                                            
T Consensus       217 igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~  296 (376)
T KOG1188|consen  217 IGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPL  296 (376)
T ss_pred             eeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEe
Confidence            9998777 5577888888899998876654322111                                            


Q ss_pred             ---------------ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          187 ---------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       187 ---------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                                     ..+|...|+++.|...+.++.+|++||.+.+|..
T Consensus       297 ~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  297 VDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             eecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence                           0125556777777777888999999999999985

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.71  E-value=5.2e-14  Score=113.66  Aligned_cols=229  Identities=17%  Similarity=0.151  Sum_probs=145.2

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe-CCCcEEEEecCCCCeeEEEe
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~   91 (305)
                      -..+.++|||+++++++.||.|.++|+.+++.+.+++.. ....++++++||++++++. .++.+.++|.++.+.+..+.
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            345779999999999999999999999999999999854 4568899999999998775 58999999999999998887


Q ss_pred             eC--------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           92 FD--------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        92 ~~--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      ..        ..+..+..++....+++...      ....+|.+.....   ..................|+|++++++.
T Consensus       118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk------d~~~I~vVdy~d~---~~~~~~~i~~g~~~~D~~~dpdgry~~v  188 (369)
T PF02239_consen  118 TGGMPVDGPESRVAAIVASPGRPEFVVNLK------DTGEIWVVDYSDP---KNLKVTTIKVGRFPHDGGFDPDGRYFLV  188 (369)
T ss_dssp             --EE-TTTS---EEEEEE-SSSSEEEEEET------TTTEEEEEETTTS---SCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred             cccccccccCCCceeEEecCCCCEEEEEEc------cCCeEEEEEeccc---cccceeeecccccccccccCcccceeee
Confidence            32        24456666777664444422      1223333321111   1222223334455678899999998776


Q ss_pred             e-eCCCcEEEEeCCCCcEeeeeccc----------------------------------------------------cCC
Q 021925          164 A-GEDAIVRIWDTETGKLLKESDKE----------------------------------------------------TGH  190 (305)
Q Consensus       164 ~-~~dg~i~iwd~~~~~~~~~~~~~----------------------------------------------------~~~  190 (305)
                      + ..+..|-++|.++++.+..+...                                                    ...
T Consensus       189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~  268 (369)
T PF02239_consen  189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ  268 (369)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred             cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence            5 45678989998887665432110                                                    001


Q ss_pred             ccceEEEEEcCCCCEEEEE----eCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeC
Q 021925          191 KKTITSLAKAADGSHFLTG----SLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       191 ~~~v~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                      ..+ .-+..+|+++++.+.    ...++|.++|.++.+.+..+.  ....+..+.|+++|+.+.++..
T Consensus       269 G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~  335 (369)
T PF02239_consen  269 GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVW  335 (369)
T ss_dssp             SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE
T ss_pred             CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEe
Confidence            112 445668999999887    445889999999998888887  3335999999999998777643

...

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.71  E-value=7.3e-15  Score=127.35  Aligned_cols=248  Identities=13%  Similarity=0.084  Sum_probs=166.1

Q ss_pred             ecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEE
Q 021925            6 MKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~   77 (305)
                      |..|+..|..++.++.. .++++||.||+|++|+...-       +...++..-..++.++...+++..+|.++.||.|.
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence            66788899999988754 99999999999999997642       22334444567899999999999999999999999


Q ss_pred             EEecCCCCe-------eEEEe--eCCCceEE-EEecC-Cc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925           78 LWNVETGAQ-------LFTFN--FDSPARSV-DFAVG-DK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (305)
Q Consensus        78 vwd~~~~~~-------~~~~~--~~~~v~~~-~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (305)
                      +.+++..+.       ....+  ..+.+.+| ++... .. .++.++.     ...+..|++......    ........
T Consensus      1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~-----~~~iv~~D~r~~~~~----w~lk~~~~ 1194 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD-----LSRIVSWDTRMRHDA----WRLKNQLR 1194 (1431)
T ss_pred             EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEe-----ccceEEecchhhhhH----HhhhcCcc
Confidence            999875211       11111  22333333 23222 22 3444433     445555665433221    11223445


Q ss_pred             CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC---CCEEEEEe--CCCeEEEEEc
Q 021925          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD---GSHFLTGS--LDKSAKLWDA  220 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--~dg~i~iwd~  220 (305)
                      .+.|++++.+|.+++++.|+..|.+.+||++-+.++.....  ++..+++.+..+|-   ....++++  ..+.|.+|++
T Consensus      1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~--P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH--PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC--cccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence            68899999999999999999999999999999998888863  35578888887763   24444444  4788999999


Q ss_pred             CCceEEEEEeeCCC--------------------eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925          221 RTLELIKTYVTERP--------------------VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLD  269 (305)
Q Consensus       221 ~~~~~~~~~~~~~~--------------------v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  269 (305)
                      .+|.+...+.....                    .....+..-+..+.+|+.|..     ++.|+....
T Consensus      1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~k-----IR~wD~~~p 1336 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMK-----IRKWDPTRP 1336 (1431)
T ss_pred             ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccc-----eeeccCCCc
Confidence            99877666652211                    112233334456777776666     556665443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=2.8e-15  Score=114.76  Aligned_cols=220  Identities=16%  Similarity=0.241  Sum_probs=168.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe----eeEEecCCCcceEEEEEcCCCc-EEEEEeCC--CcEEEEecC
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSRDSM-TLITGSAD--QTAKLWNVE   82 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d--g~v~vwd~~   82 (305)
                      +++|..++.. || .|++|-.+|.+.+|..+.+.    .+..+..+ ..+..+.-++..+ .+++|+..  ..+.+||++
T Consensus       105 ~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  105 TKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             cccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            4445555443 33 67888899999999887443    33333333 4567777777544 55668888  889999999


Q ss_pred             CCCeeEEEe----------eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCee
Q 021925           83 TGAQLFTFN----------FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (305)
Q Consensus        83 ~~~~~~~~~----------~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (305)
                      +.+.+.+-+          .+-.++++.|.++  ...+++++.     ...+++++..     ..-.++..+.-...+++
T Consensus       182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~-----~hqvR~YDt~-----~qRRPV~~fd~~E~~is  251 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR-----YHQVRLYDTR-----HQRRPVAQFDFLENPIS  251 (412)
T ss_pred             cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec-----ceeEEEecCc-----ccCcceeEeccccCcce
Confidence            886665543          2335667888887  667776654     4555555554     33467777777889999


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeee-eccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE
Q 021925          151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (305)
Q Consensus       151 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  229 (305)
                      ++...|+++.+++|..-|.+..+|++.++.... +.   +-.+.++++..+|.++++++++.|..+||+|+.+.+++...
T Consensus       252 ~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k---g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv  328 (412)
T KOG3881|consen  252 STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK---GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV  328 (412)
T ss_pred             eeeecCCCcEEEEecccchhheecccCceeeccccC---CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence            999999999999999999999999999988877 54   77889999999999999999999999999999998888888


Q ss_pred             eeCCCeeEEEecCCCC
Q 021925          230 VTERPVNAVTMSPLLD  245 (305)
Q Consensus       230 ~~~~~v~~~~~~~~~~  245 (305)
                      ...+.++++.+.++-+
T Consensus       329 YvKs~lt~il~~~~~n  344 (412)
T KOG3881|consen  329 YVKSRLTFILLRDDVN  344 (412)
T ss_pred             hhhccccEEEecCCcc
Confidence            8888888888876544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.70  E-value=5.6e-16  Score=123.29  Aligned_cols=183  Identities=12%  Similarity=0.211  Sum_probs=143.0

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      +.+|.+.|.+-.|+|||.-|+++++||.|++|. ++|-...++-....+|.|++|.|+.+.++-+.. +.+.|=-+....
T Consensus       100 v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~  177 (737)
T KOG1524|consen  100 ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANS  177 (737)
T ss_pred             hhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeeccccc
Confidence            568999999999999999999999999999998 566666666667889999999998877666544 567777766555


Q ss_pred             eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      .+...+ |++-+.++.|++.+.+++.++.     +...++|+-       .+.....-..|.-+|++++|.|+ +.++.+
T Consensus       178 k~i~WkAHDGiiL~~~W~~~s~lI~sgGE-----D~kfKvWD~-------~G~~Lf~S~~~ey~ITSva~npd-~~~~v~  244 (737)
T KOG1524|consen  178 KIIRWRAHDGLVLSLSWSTQSNIIASGGE-----DFRFKIWDA-------QGANLFTSAAEEYAITSVAFNPE-KDYLLW  244 (737)
T ss_pred             ceeEEeccCcEEEEeecCccccceeecCC-----ceeEEeecc-------cCcccccCChhccceeeeeeccc-cceeee
Confidence            555555 8999999999999999999886     444555554       34556666789999999999999 555555


Q ss_pred             eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW  218 (305)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  218 (305)
                      +. .+++            +..  ...+.|..++||+||..+++|+..|.+.+=
T Consensus       245 S~-nt~R------------~~~--p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  245 SY-NTAR------------FSS--PRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ee-eeee------------ecC--CCccceEEEEEcCCCceeeccccCceEEEe
Confidence            43 2333            221  356789999999999999999999986653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.70  E-value=3.6e-14  Score=118.47  Aligned_cols=210  Identities=12%  Similarity=0.053  Sum_probs=141.3

Q ss_pred             CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceE
Q 021925           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (305)
Q Consensus        32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  108 (305)
                      ..|.++|... ...+.+..+...+...+|+|||++|+.++.+   ..|.+||+.+++.............+.|+|+++.+
T Consensus       170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            3577778653 3345555577789999999999999877653   47999999988765555566667789999999877


Q ss_pred             EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeec
Q 021925          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESD  185 (305)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~  185 (305)
                      +.......  ...+..+++..       .....+..+........|+|+++.|+..+. ++  .|+++|+.+++... +.
T Consensus       249 ~~~~~~~~--~~~i~~~d~~~-------~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~  318 (417)
T TIGR02800       249 AVSLSKDG--NPDIYVMDLDG-------KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT  318 (417)
T ss_pred             EEEECCCC--CccEEEEECCC-------CCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee
Confidence            65432110  11233333221       122333444444557789999998876654 33  68888988766433 32


Q ss_pred             cccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          186 KETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                         .+........|+|+|++++.++.++   .|.+||+.++... .+.........+|+|+|+.|+.++.++..
T Consensus       319 ---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~~  388 (417)
T TIGR02800       319 ---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTRGGR  388 (417)
T ss_pred             ---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeCCCc
Confidence               2345567789999999999888776   7999999876543 23222334567899999998887665543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=6.6e-14  Score=115.87  Aligned_cols=230  Identities=13%  Similarity=0.037  Sum_probs=144.7

Q ss_pred             ceEecccccceEEEEEcCCCCE--E-EEeeCCC--ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CC--
Q 021925            3 PILMKGHERPLTYLKYNKDGDL--L-FSCAKDH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ--   74 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~--l-~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg--   74 (305)
                      |..+......+..-+|+|||+.  + ++...+|  .|.+.++.+++.. .+....+.....+|+|||+.|+..+. +|  
T Consensus       177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~  255 (428)
T PRK01029        177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNP  255 (428)
T ss_pred             ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCc
Confidence            3445555666778899999975  2 2444444  5777788777643 33334555667899999998876553 23  


Q ss_pred             --cEEEEecCCC---CeeEEEeeC-CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC
Q 021925           75 --TAKLWNVETG---AQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR  148 (305)
Q Consensus        75 --~v~vwd~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (305)
                        .+..|++..+   +........ .......|+|+|+.++..++..    +...++.....   ..+.....+..+...
T Consensus       256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~----g~~~ly~~~~~---~~g~~~~~lt~~~~~  328 (428)
T PRK01029        256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKD----GRPRIYIMQID---PEGQSPRLLTKKYRN  328 (428)
T ss_pred             ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECc---ccccceEEeccCCCC
Confidence              3444776653   322222222 3446789999999877665421    12233332211   111223344445556


Q ss_pred             eeEEEEcCCCCEEEEeeCC---CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC---CCeEEEEEcCC
Q 021925          149 INRAVWGPLNRTIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDART  222 (305)
Q Consensus       149 i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~  222 (305)
                      +....|+|||+.|+..+.+   ..|.+||+.+++......    ....+....|+|||+.|+..+.   ...|+++|+..
T Consensus       329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~----~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~  404 (428)
T PRK01029        329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT----SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT  404 (428)
T ss_pred             ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC----CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            7789999999988876543   479999998887643322    2335677899999998875443   35699999988


Q ss_pred             ceEEEEEeeCCCeeEEEecCCC
Q 021925          223 LELIKTYVTERPVNAVTMSPLL  244 (305)
Q Consensus       223 ~~~~~~~~~~~~v~~~~~~~~~  244 (305)
                      ++..........+...+|+|..
T Consensus       405 g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        405 KKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCEEEeecCCCcccCceecCCC
Confidence            7765555555567788888854

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1e-14  Score=112.10  Aligned_cols=249  Identities=14%  Similarity=0.128  Sum_probs=169.4

Q ss_pred             CceEecc--cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC--CCcceEEEEEcCCCcEEEEEeCCCcEE
Q 021925            2 RPILMKG--HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAK   77 (305)
Q Consensus         2 ~~~~l~~--h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~dg~v~   77 (305)
                      |||-+.+  |...|.|++|....+.+++|+.+++|...|+++.+.+..+..  ..+.|..+..+|..+.|++.+.+|.|.
T Consensus        95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~  174 (609)
T KOG4227|consen   95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVS  174 (609)
T ss_pred             CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEE
Confidence            5776665  457899999999999999999999999999999888776652  235899999999888999999999999


Q ss_pred             EEecCCCC----eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCC-CceEEEEeccCCCeeEE
Q 021925           78 LWNVETGA----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG-GESVLILKGPQGRINRA  152 (305)
Q Consensus        78 vwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~  152 (305)
                      +||.+..+    ++...+.+.....+.|+|....++.....    .+...+|+.......-- ......+......-..+
T Consensus       175 ~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~----~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~  250 (609)
T KOG4227|consen  175 FIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSE----TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS  250 (609)
T ss_pred             EEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccc----cCCCCceeeccccchHHhhhccccCcccchhhhhe
Confidence            99998654    33333466777888999976555444321    23344455443211000 00000111112233678


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCCcE-eeeecccc---CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-----
Q 021925          153 VWGPLNRTIISAGEDAIVRIWDTETGKL-LKESDKET---GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-----  223 (305)
Q Consensus       153 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----  223 (305)
                      .|+|+|+.+++--....-.+||+.+.++ +.++....   .....+.+++|..|. .+++|+.+-.|++|.+...     
T Consensus       251 ~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G  329 (609)
T KOG4227|consen  251 LWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYG  329 (609)
T ss_pred             eeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccC
Confidence            8999999888877766677889876443 33332000   112457788887664 4999999999999987521     


Q ss_pred             ------------------eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          224 ------------------ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       224 ------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                                        +.+..++ |.+-++.+.|+|...+|++.+-.+.
T Consensus       330 ~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~  380 (609)
T KOG4227|consen  330 FTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENS  380 (609)
T ss_pred             ccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhh
Confidence                              1122233 6677899999999888887776665

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.69  E-value=5e-15  Score=110.62  Aligned_cols=204  Identities=14%  Similarity=0.153  Sum_probs=156.8

Q ss_pred             EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC---eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925           47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA---QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (305)
Q Consensus        47 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~---~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (305)
                      .+..-.++|+|.+|++|+..+|.+-....|.||.....+   ...+++ +...++.+.|+|..+.++.++.     +...
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~-----drna   79 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH-----DRNA   79 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC-----CCCc
Confidence            333346789999999999999999999999999987765   344444 8889999999999988888775     2333


Q ss_pred             EEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe---eeeccccCCccceEEEEE
Q 021925          123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL---KESDKETGHKKTITSLAK  199 (305)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~  199 (305)
                      .+|...   ....-++...+..+....+++.|+|.++.+|+|+.-..|.+|-.+..+.-   +.+.  ..+...|++++|
T Consensus        80 yVw~~~---~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik--kPirStv~sldW  154 (361)
T KOG1523|consen   80 YVWTQP---SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK--KPIRSTVTSLDW  154 (361)
T ss_pred             cccccC---CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC--Cccccceeeeec
Confidence            333332   22344677778889999999999999999999999999999987654322   1111  146789999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcC------------------CceEEEEE-eeCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925          200 AADGSHFLTGSLDKSAKLWDAR------------------TLELIKTY-VTERPVNAVTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       200 ~~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                      +|++-+|++|+.|+..+++..-                  -|+++.++ ...+.+..+.|+|+|..|+-.+.|+.+.+..
T Consensus       155 hpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  155 HPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             cCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence            9999999999999999998531                  13445555 3667899999999999999888777754443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3.1e-14  Score=108.24  Aligned_cols=227  Identities=13%  Similarity=0.130  Sum_probs=153.5

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCC----
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG----   84 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~----   84 (305)
                      -.+..++|++.-..+|++..|-.|++|+-.. +....++ .....|++++|-|. ++.|+.|+.. -|.+|.....    
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence            4578899999777788999999999999665 4444444 24567999999994 4677777774 5999975421    


Q ss_pred             C--------eeEEE--eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925           85 A--------QLFTF--NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (305)
Q Consensus        85 ~--------~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (305)
                      +        ....+  ....+|+++.|.+++..++.++-    ....+.+|+....      ..+.......+.+.-+.|
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~----gsssi~iWdpdtg------~~~pL~~~glgg~slLkw  246 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF----GSSSIMIWDPDTG------QKIPLIPKGLGGFSLLKW  246 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc----CcceEEEEcCCCC------CcccccccCCCceeeEEE
Confidence            1        11112  24468999999999999988763    2455666766432      122222344567888999


Q ss_pred             cCCCCEEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC--Cc--------
Q 021925          155 GPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR--TL--------  223 (305)
Q Consensus       155 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~--------  223 (305)
                      |||+.+|+++.-|+..++|+... ....+-..    ..+.|...+|+|+|++|+..+. |.-++|.+.  ..        
T Consensus       247 SPdgd~lfaAt~davfrlw~e~q~wt~erw~l----gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~  321 (445)
T KOG2139|consen  247 SPDGDVLFAATCDAVFRLWQENQSWTKERWIL----GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ  321 (445)
T ss_pred             cCCCCEEEEecccceeeeehhcccceecceec----cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence            99999999999999999996543 33333222    4458999999999998765442 223444332  10        


Q ss_pred             -----eEEEEEe----------eCCCeeEEEecCCCCcEEEeeCCc
Q 021925          224 -----ELIKTYV----------TERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       224 -----~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                           .++..+.          ..++..+++|.|.|.+|++.-..+
T Consensus       322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence                 0111111          245689999999999999975444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.68  E-value=3.5e-14  Score=118.53  Aligned_cols=211  Identities=16%  Similarity=0.086  Sum_probs=138.6

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEE-EeCCC--cE
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT-GSADQ--TA   76 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~dg--~v   76 (305)
                      +..+..+...+...+|+|||++|+.++.+   ..|++||+.+++... +..+.+.+.+++|+|||+.|+. .+.++  .|
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i  260 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI  260 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence            34555677778999999999999987654   479999998876543 3345666778999999987764 44444  58


Q ss_pred             EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      .+||+.+++...............|+|+++.++..++...    ...++.+...    . .....+..+........|+|
T Consensus       261 ~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~----~-~~~~~l~~~~~~~~~~~~sp  331 (417)
T TIGR02800       261 YVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----SPQIYMMDAD----G-GEVRRLTFRGGYNASPSWSP  331 (417)
T ss_pred             EEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----CceEEEEECC----C-CCEEEeecCCCCccCeEECC
Confidence            8889887765444444445567789999988776654211    1122222211    1 12334444556677889999


Q ss_pred             CCCEEEEeeCCC---cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceEEEEE
Q 021925          157 LNRTIISAGEDA---IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTY  229 (305)
Q Consensus       157 ~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~  229 (305)
                      ++++++.++.++   .|.+||+.++.. ..+..    ........|+|+|+.|+..+.++   .+++.+.. ++....+
T Consensus       332 dg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~----~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~  404 (417)
T TIGR02800       332 DGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTD----TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARL  404 (417)
T ss_pred             CCCEEEEEEccCCceEEEEEeCCCCCe-EEccC----CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeEC
Confidence            999999888775   899999987543 33321    11234568999999888777654   35555543 4444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.6e-14  Score=116.00  Aligned_cols=242  Identities=15%  Similarity=0.137  Sum_probs=169.5

Q ss_pred             ccccceEEEEEcCCCCEE-EEeeCCCceEEEEcCCCeeeEEecCC--CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            8 GHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      +|....+.|..+|||+|+ |+|..--.|++||+.+....  +..|  ...|.-.-.+.|-..++.-..|.+|-+...  .
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak--~  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK--Y  124 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhh--c
Confidence            577888999999999976 55667889999998865543  3333  334555555556666777777888877653  3


Q ss_pred             CeeEEEeeCCCceEEEEecCCceEE-EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           85 AQLFTFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      ..-..+..+.....++++.-..-++ +++..      .+.-.++      +.+..+..+....+.++++..++-..+|++
T Consensus       125 G~hy~~RIP~~GRDm~y~~~scDly~~gsg~------evYRlNL------EqGrfL~P~~~~~~~lN~v~in~~hgLla~  192 (703)
T KOG2321|consen  125 GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGS------EVYRLNL------EQGRFLNPFETDSGELNVVSINEEHGLLAC  192 (703)
T ss_pred             CeeeeeecCcCCccccccCCCccEEEeecCc------ceEEEEc------cccccccccccccccceeeeecCccceEEe
Confidence            3445556777778888876443333 33321      1111112      334555556666788999999999999999


Q ss_pred             eeCCCcEEEEeCCCCcEeeeecccc---CCc-----cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCC
Q 021925          164 AGEDAIVRIWDTETGKLLKESDKET---GHK-----KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TER  233 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~~---~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~  233 (305)
                      |+.+|.|..||.++...+..+....   .|.     ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-.  ...
T Consensus       193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~  272 (703)
T KOG2321|consen  193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYEL  272 (703)
T ss_pred             cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcc
Confidence            9999999999999887766664321   122     349999999999999999999999999999999887766  456


Q ss_pred             CeeEEEecCCC--CcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925          234 PVNAVTMSPLL--DHVCIGEPQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       234 ~v~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
                      +|..+.|.+.+  +.+++.  |...    +++|+-.....
T Consensus       273 pi~~l~~~~~~~q~~v~S~--Dk~~----~kiWd~~~Gk~  306 (703)
T KOG2321|consen  273 PIKKLDWQDTDQQNKVVSM--DKRI----LKIWDECTGKP  306 (703)
T ss_pred             ceeeecccccCCCceEEec--chHH----hhhcccccCCc
Confidence            78999998764  334443  3332    77777554433

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=7.8e-14  Score=116.61  Aligned_cols=225  Identities=13%  Similarity=0.087  Sum_probs=142.2

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCC--cE
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQ--TA   76 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg--~v   76 (305)
                      +..+..+...+...+|+|||+.|+..+.+   ..|.+|++.+++... +....+.+....|+|||+.|+ +.+.+|  .|
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence            34566677889999999999999876643   368899998876533 333445566789999998886 444455  58


Q ss_pred             EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      .++|+.+++...............|+|+++.++..++..    +...++....    ..++. ..+...........|+|
T Consensus       270 y~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~----~~g~~-~~lt~~~~~~~~~~~Sp  340 (430)
T PRK00178        270 YVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG----GKPQIYKVNV----NGGRA-ERVTFVGNYNARPRLSA  340 (430)
T ss_pred             EEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEEC----CCCCE-EEeecCCCCccceEECC
Confidence            888998877554334455566789999998877665421    1112222211    11111 11221122334578999


Q ss_pred             CCCEEEEeeCC-C--cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEEEEe
Q 021925          157 LNRTIISAGED-A--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV  230 (305)
Q Consensus       157 ~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~  230 (305)
                      +++.++..+.+ +  .|.++|+.+++. +.+..  .  .......|+|||+.++..+.+   ..+.+.++.. .....+.
T Consensus       341 dg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~--~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~  414 (430)
T PRK00178        341 DGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD--T--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLP  414 (430)
T ss_pred             CCCEEEEEEccCCceEEEEEECCCCCE-EEccC--C--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECc
Confidence            99999877653 3  588999988764 33321  1  112245899999998876654   3477777753 3333343


Q ss_pred             -eCCCeeEEEecCC
Q 021925          231 -TERPVNAVTMSPL  243 (305)
Q Consensus       231 -~~~~v~~~~~~~~  243 (305)
                       ....+...+|+|-
T Consensus       415 ~~~g~~~~p~ws~~  428 (430)
T PRK00178        415 TAQGEVREPSWSPY  428 (430)
T ss_pred             CCCCCcCCCccCCC
Confidence             3455677778774

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.67  E-value=9.9e-14  Score=104.34  Aligned_cols=246  Identities=11%  Similarity=0.112  Sum_probs=164.7

Q ss_pred             ecccccceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-C----------
Q 021925            6 MKGHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-D----------   73 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d----------   73 (305)
                      +..-..++.+++|||||+.++ +...+-.|.+|.+.+.+... +.--+..+..++|+|||++.+.++. |          
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            344567799999999996554 56668899999998766433 2223345688889999887776543 1          


Q ss_pred             -------------------------CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEee
Q 021925           74 -------------------------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA  128 (305)
Q Consensus        74 -------------------------g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (305)
                                               ..+.+||.--.-.+..+..+-.+..++|+|.+.++++++-+.....-....|...
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f  245 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF  245 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence                                     2344555333333334455667888999999999988875321111111111100


Q ss_pred             cc---------------------------------cC----------------CCCCceEEEEe------ccCCCeeEEE
Q 021925          129 RD---------------------------------PA----------------DQGGESVLILK------GPQGRINRAV  153 (305)
Q Consensus       129 ~~---------------------------------~~----------------~~~~~~~~~~~------~~~~~i~~~~  153 (305)
                      ..                                 +.                ......+..++      ...-.+-.++
T Consensus       246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la  325 (447)
T KOG4497|consen  246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA  325 (447)
T ss_pred             hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence            00                                 00                00001111222      2234566799


Q ss_pred             EcCCCCEEEEeeC--CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925          154 WGPLNRTIISAGE--DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (305)
Q Consensus       154 ~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  231 (305)
                      |++|..++++-..  -..+-+||++..+....+.    ...+|....|+|....|+.+....++++|.......+..-..
T Consensus       326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi----Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~  401 (447)
T KOG4497|consen  326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI----QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK  401 (447)
T ss_pred             ecCCceEEeeecCCCCceEEEEechhhhhhhhhh----hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCC
Confidence            9999999998764  3679999999877666554    567899999999999999888888999999876556555556


Q ss_pred             CCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          232 ERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       232 ~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      +..|..+.|.-+|..++..+.|..-
T Consensus       402 GF~i~~l~W~~~g~~i~l~~kDafc  426 (447)
T KOG4497|consen  402 GFNIQKLQWLQPGEFIVLCGKDAFC  426 (447)
T ss_pred             CceeeeEEecCCCcEEEEEcCCceE
Confidence            6789999999999999999888653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=4.6e-16  Score=122.20  Aligned_cols=255  Identities=16%  Similarity=0.254  Sum_probs=174.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcC--CCcEEEEEeCCCcEEEEec
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSR--DSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd~   81 (305)
                      .|.+|.+.|+.+.|+..|..|++|+.|..|.+||...++....+. +|...|....|.|  +...+++++.||.+++=.+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            478999999999999999999999999999999999988777765 6999999999988  4468999999999999876


Q ss_pred             CCCCeeE----EEeeCCCceEEEEecCCceEEEeC-Ccceee--------------------eeeEEEEEeecccCCC--
Q 021925           82 ETGAQLF----TFNFDSPARSVDFAVGDKLAVITT-DPFMEL--------------------NSAIHVKRIARDPADQ--  134 (305)
Q Consensus        82 ~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~--------------------~~~~~~~~~~~~~~~~--  134 (305)
                      .....+.    ...+.+++..++..|+...-+... ......                    ...+.+..+...+...  
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~  296 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE  296 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence            4333222    223777788887777543322221 111100                    0011222222111100  


Q ss_pred             ----------------------CCceEEEE------eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCc-------
Q 021925          135 ----------------------GGESVLIL------KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-------  179 (305)
Q Consensus       135 ----------------------~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------  179 (305)
                                            ....+..+      ....-.|++++++.++.-|+++..|-.|+++.-..+.       
T Consensus       297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~  376 (559)
T KOG1334|consen  297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS  376 (559)
T ss_pred             cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence                                  00001111      1223468999999888888888889999999543221       


Q ss_pred             -----EeeeeccccCCc--cceEEEEE-cCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEe
Q 021925          180 -----LLKESDKETGHK--KTITSLAK-AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       180 -----~~~~~~~~~~~~--~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~  250 (305)
                           .++..  ..+|.  ..|..+-| -|...++++|+.=|.|.||+-.+++.+..+. -..-|+|+.-+|--..||++
T Consensus       377 s~~~~~~k~v--YKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS  454 (559)
T KOG1334|consen  377 SPREQYVKRV--YKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS  454 (559)
T ss_pred             cchhhccchh--hcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence                 12221  12454  34666654 5778899999999999999999999888776 22378999999999999998


Q ss_pred             eCCcEEEEEEeehhhh
Q 021925          251 EPQTIKFMLLVYLFVL  266 (305)
Q Consensus       251 ~~~~~~~~~~~~~~~~  266 (305)
                      +-+.-     +++|..
T Consensus       455 Gid~D-----VKIWTP  465 (559)
T KOG1334|consen  455 GIDHD-----VKIWTP  465 (559)
T ss_pred             CCccc-----eeeecC
Confidence            76665     666654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.2e-13  Score=115.25  Aligned_cols=223  Identities=15%  Similarity=0.068  Sum_probs=139.0

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCC-C--ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEE-EeCCCc--EEE
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKD-H--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT-GSADQT--AKL   78 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~d-g--~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~dg~--v~v   78 (305)
                      .+..+...+.+..|+|||+.|+..+.+ +  .|++||+.+++... +....+.....+|+|||+.|+. .+.+|.  |.+
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~  290 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV  290 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence            344556678899999999998876543 3  58888988776532 3323334457899999997765 455665  777


Q ss_pred             EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      +|+++++...............|+|+++.++..++..    +...++.+...    .++ ...+..........+|+|+|
T Consensus       291 ~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~----~g~-~~~Lt~~g~~~~~~~~SpDG  361 (448)
T PRK04792        291 VDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG----GKPQIYRVNLA----SGK-VSRLTFEGEQNLGGSITPDG  361 (448)
T ss_pred             EECCCCCeEECccCCCCccceEECCCCCEEEEEECCC----CCceEEEEECC----CCC-EEEEecCCCCCcCeeECCCC
Confidence            7888776544444445567889999999887765421    11223332211    112 22222222223457899999


Q ss_pred             CEEEEeeC-CC--cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceEEEEEe-e
Q 021925          159 RTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-K--SAKLWDARTLELIKTYV-T  231 (305)
Q Consensus       159 ~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~-~  231 (305)
                      ++|+..+. ++  .|.++|+.+++.. .+..   . .......|+|||+.|+..+.+ |  .+++++. +++....+. .
T Consensus       362 ~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~---~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~  435 (448)
T PRK04792        362 RSMIMVNRTNGKFNIARQDLETGAMQ-VLTS---T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG  435 (448)
T ss_pred             CEEEEEEecCCceEEEEEECCCCCeE-EccC---C-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC
Confidence            99887655 33  4666788877643 3321   1 112234799999988765543 3  3777786 455555554 4


Q ss_pred             CCCeeEEEecCC
Q 021925          232 ERPVNAVTMSPL  243 (305)
Q Consensus       232 ~~~v~~~~~~~~  243 (305)
                      ...+...+|+|-
T Consensus       436 ~g~~~~p~Wsp~  447 (448)
T PRK04792        436 QGEVKSPAWSPF  447 (448)
T ss_pred             CCCcCCCccCCC
Confidence            456778888873

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=6e-14  Score=112.35  Aligned_cols=253  Identities=16%  Similarity=0.196  Sum_probs=162.9

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEE-----eC-----CCcEEEE
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-----SA-----DQTAKLW   79 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-----~~-----dg~v~vw   79 (305)
                      ..+++..+++++|+++|.+. +..++|++..++..+.+....  .+.++.|+|-+++|.+=     ..     .-.+.+|
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~  110 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY  110 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence            44578889999998888765 679999999888655555433  78999999999888751     11     2447799


Q ss_pred             ecCCCCeeEEEe-----------------------------------------eCCCceEEEEecCCc--eEEEeCCcce
Q 021925           80 NVETGAQLFTFN-----------------------------------------FDSPARSVDFAVGDK--LAVITTDPFM  116 (305)
Q Consensus        80 d~~~~~~~~~~~-----------------------------------------~~~~v~~~~~~~~~~--~~~~~~~~~~  116 (305)
                      +++++.....+.                                         +...+..+.++|.+.  .+++-....-
T Consensus       111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k  190 (566)
T KOG2315|consen  111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKK  190 (566)
T ss_pred             eeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCC
Confidence            887643222221                                         222344455555421  1221111000


Q ss_pred             eeeeeEEEEEee----------------------------------cccCCC----------------CCceEEEEeccC
Q 021925          117 ELNSAIHVKRIA----------------------------------RDPADQ----------------GGESVLILKGPQ  146 (305)
Q Consensus       117 ~~~~~~~~~~~~----------------------------------~~~~~~----------------~~~~~~~~~~~~  146 (305)
                      .....++++...                                  ....+.                .+.....--...
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~  270 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE  270 (566)
T ss_pred             CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence            000011111110                                  000000                011122222347


Q ss_pred             CCeeEEEEcCCCCEEEE--eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC---CCeEEEEEcC
Q 021925          147 GRINRAVWGPLNRTIIS--AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDAR  221 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~  221 (305)
                      ++|.++.|+|+++.+++  |-+-.++.|+|++ ++++..+.     .++-+++-|+|.|++|+.++.   .|.|.+||+.
T Consensus       271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-----CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            89999999999987664  4567899999997 67777764     567788999999999988775   5889999999


Q ss_pred             CceEEEEEeeCCCeeEEEecCCCCcEEEeeCC-cEEEEEEeehhhhhhhhhh
Q 021925          222 TLELIKTYVTERPVNAVTMSPLLDHVCIGEPQ-TIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       222 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~  272 (305)
                      +.+++..+.... -+-+.|+|||+++++++.. ..++...+++|+....++.
T Consensus       345 n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~  395 (566)
T KOG2315|consen  345 NRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH  395 (566)
T ss_pred             chhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence            999988887544 3456999999999998654 7777777888876544433

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.65  E-value=2.1e-16  Score=131.72  Aligned_cols=209  Identities=20%  Similarity=0.291  Sum_probs=149.7

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      ..+||.+.|+.++.+.+...+|+++.|..|++|.+.++.++..+.+|++.|++++|+|-.    +.+.||++++||.+-.
T Consensus       227 s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~  302 (1113)
T KOG0644|consen  227 SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE  302 (1113)
T ss_pred             cCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccc
Confidence            367999999999999999999999999999999999999999999999999999999954    7788999999998711


Q ss_pred             CeeE-----EEeeCCCceEEEEecCCc--------------------------eEEEeCCcce------eeeeeEEEEEe
Q 021925           85 AQLF-----TFNFDSPARSVDFAVGDK--------------------------LAVITTDPFM------ELNSAIHVKRI  127 (305)
Q Consensus        85 ~~~~-----~~~~~~~v~~~~~~~~~~--------------------------~~~~~~~~~~------~~~~~~~~~~~  127 (305)
                      -...     .+.....+.++.+...+.                          .++.......      .......+|+ 
T Consensus       303 ~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwn-  381 (1113)
T KOG0644|consen  303 PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWN-  381 (1113)
T ss_pred             ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeee-
Confidence            0000     001111222222222222                          2222221000      0011111222 


Q ss_pred             ecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEE
Q 021925          128 ARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF  206 (305)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  206 (305)
                           ...+...+.+.+|...+..+.++|-+..+ .+++.||...|||+-.+.+++.+..  + ...+....|+++|..+
T Consensus       382 -----l~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~--g-h~kl~d~kFSqdgts~  453 (1113)
T KOG0644|consen  382 -----LYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI--G-HGKLVDGKFSQDGTSI  453 (1113)
T ss_pred             -----cccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec--c-cceeeccccCCCCceE
Confidence                 23455667778899999999999977554 4889999999999999998888772  4 4556667899999999


Q ss_pred             EEEeCCCeEEEEEcCCceEE
Q 021925          207 LTGSLDKSAKLWDARTLELI  226 (305)
Q Consensus       207 ~~~~~dg~i~iwd~~~~~~~  226 (305)
                      +....-|.++|...-.++..
T Consensus       454 ~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  454 ALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             ecCCCCCceEEeccCCCccc
Confidence            99888899999876655443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.64  E-value=4.6e-12  Score=102.52  Aligned_cols=240  Identities=14%  Similarity=0.160  Sum_probs=155.0

Q ss_pred             cceEEEEEcCCCCEEEEeeC----CCceEEEEcCCC--e--eeEEecCCCcceEEEEEcCCCcEEEEEeC-CCcEEEEec
Q 021925           11 RPLTYLKYNKDGDLLFSCAK----DHTPTVWFADNG--E--RLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNV   81 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~----dg~v~iw~~~~~--~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~vwd~   81 (305)
                      .....++++|++++|+++..    +|.|..|++...  +  .+.+..........++++|++++|+++.. +|.|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34567889999999998876    568988887763  3  33334323455678999999999988875 899999999


Q ss_pred             CCCCeeEEE----e-----------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-cc
Q 021925           82 ETGAQLFTF----N-----------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GP  145 (305)
Q Consensus        82 ~~~~~~~~~----~-----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  145 (305)
                      .....+...    .           ......++.++|+++++++..-+    ...+..+++....  ........+. ..
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG----~D~v~~~~~~~~~--~~l~~~~~~~~~~  190 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG----ADRVYVYDIDDDT--GKLTPVDSIKVPP  190 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT----TTEEEEEEE-TTS---TEEEEEEEECST
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC----CCEEEEEEEeCCC--ceEEEeecccccc
Confidence            874322222    1           23456789999999988886532    2234444443221  0011122222 34


Q ss_pred             CCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCC--CCc--Eeeeeccc---cCCccceEEEEEcCCCCEEEEEe-CCCeEE
Q 021925          146 QGRINRAVWGPLNRTIISAGE-DAIVRIWDTE--TGK--LLKESDKE---TGHKKTITSLAKAADGSHFLTGS-LDKSAK  216 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~--~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~  216 (305)
                      ......+.|+|++++++...+ ++.|.++++.  +++  .+..+...   .........++++|||++|+++. .++.|.
T Consensus       191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~  270 (345)
T PF10282_consen  191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS  270 (345)
T ss_dssp             TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred             CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence            456789999999998877765 7889999988  332  22222211   11123678899999999987766 467899


Q ss_pred             EEEcC--Cc--eEEEEEee-CCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          217 LWDAR--TL--ELIKTYVT-ERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       217 iwd~~--~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      +|++.  ++  +.+..+.. ......++++|+|++|+++..++..
T Consensus       271 vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~  315 (345)
T PF10282_consen  271 VFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT  315 (345)
T ss_dssp             EEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             EEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence            99983  23  34444443 4558999999999999998755543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.3e-15  Score=121.56  Aligned_cols=161  Identities=22%  Similarity=0.380  Sum_probs=123.0

Q ss_pred             eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEE
Q 021925           44 RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH  123 (305)
Q Consensus        44 ~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (305)
                      ..+.+.+|.+.|.+++|+.+|.+|++|+.|-.+.|||.-..+.+..+.                                
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--------------------------------   89 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--------------------------------   89 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--------------------------------
Confidence            345678999999999999999999999999999999987666655443                                


Q ss_pred             EEEeecccCCCCCceEEEEeccCCCeeEEEEcCC--CCEEEEeeCCCcEEEEeCCCCc-------EeeeeccccCCccce
Q 021925          124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGK-------LLKESDKETGHKKTI  194 (305)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~v  194 (305)
                                         .+|...|.++.|-|.  .+.+++|..|..|+++|+...+       ...+......|...|
T Consensus        90 -------------------TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rV  150 (758)
T KOG1310|consen   90 -------------------TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRV  150 (758)
T ss_pred             -------------------cccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhh
Confidence                               578888999999884  4688899999999999998522       111122223688899


Q ss_pred             EEEEEcCCC-CEEEEEeCCCeEEEEEcCCceE-------EEEEe--e--CCCeeEEEecCCCCc-EEEeeCCcE
Q 021925          195 TSLAKAADG-SHFLTGSLDKSAKLWDARTLEL-------IKTYV--T--ERPVNAVTMSPLLDH-VCIGEPQTI  255 (305)
Q Consensus       195 ~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-------~~~~~--~--~~~v~~~~~~~~~~~-l~~~~~~~~  255 (305)
                      ..++..|++ +.+.++++||+|+-+|++....       ...+.  +  --...|+.++|...+ |++|+++-.
T Consensus       151 Kria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpf  224 (758)
T KOG1310|consen  151 KRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPF  224 (758)
T ss_pred             hheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCch
Confidence            999999988 7889999999999999986311       11111  1  123578999998765 777777665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=5.9e-13  Score=111.37  Aligned_cols=208  Identities=13%  Similarity=0.033  Sum_probs=135.3

Q ss_pred             ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEE
Q 021925           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV  109 (305)
Q Consensus        33 ~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  109 (305)
                      .|.++|.+.+. .+.+..+...+....|+|||+.|+..+.+   ..|.+||+.+++...............|+|+++.++
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence            47777766444 45555577889999999999998876543   368899999887655444555666799999998877


Q ss_pred             EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeecc
Q 021925          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESDK  186 (305)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~  186 (305)
                      .......  ...+..+++.       ......+..+........|+|+++.|+..+. +|  .|+++|+.+++..+... 
T Consensus       259 ~~~~~~g--~~~Iy~~d~~-------~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-  328 (430)
T PRK00178        259 FVLSKDG--NPEIYVMDLA-------SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-  328 (430)
T ss_pred             EEEccCC--CceEEEEECC-------CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-
Confidence            5432111  1122223322       1223334445555677899999998876654 33  68888887776433221 


Q ss_pred             ccCCccceEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          187 ETGHKKTITSLAKAADGSHFLTGSLD-K--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                         .........|+|+|+.|+..+.+ +  .|.++|+.+++... +..........|+|+|+.++.++.++.
T Consensus       329 ---~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g  396 (430)
T PRK00178        329 ---VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQG  396 (430)
T ss_pred             ---CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCC
Confidence               11233457899999998876653 3  58899998876533 332223345689999999988765543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=8.6e-13  Score=109.31  Aligned_cols=214  Identities=12%  Similarity=0.037  Sum_probs=132.5

Q ss_pred             CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE---EEEeCCC--cEEEEecCCCCeeEEEeeCCCceEEEEecCCc
Q 021925           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL---ITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDK  106 (305)
Q Consensus        32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l---~s~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~  106 (305)
                      +.|.+.|.+.+. .+.+.........-+|+|||+.+   ++...+|  .|.+.++.+++.......+......+|+|+|+
T Consensus       165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence            356677765444 34455556677888999999752   2444444  47777888887666555667777889999998


Q ss_pred             eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEE--eCCC-CcEee
Q 021925          107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIW--DTET-GKLLK  182 (305)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~-~~~~~  182 (305)
                      .++...+...........+++...   ..++...............+|+|||+.|+..+ .+|...+|  ++.. +....
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g---~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~  320 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETG---AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR  320 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccC---CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence            888765421111111111111110   11222233333334456789999999888665 46654444  5432 22233


Q ss_pred             eeccccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeC
Q 021925          183 ESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       183 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                      .+.   .+...+....|+|||+.|+..+.+   ..|.+||+.+++..........+....|+|||+.|+....
T Consensus       321 ~lt---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        321 LLT---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             Eec---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEEC
Confidence            333   234466788999999998876543   4699999998876544334445778999999998876543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.62  E-value=4.1e-12  Score=100.55  Aligned_cols=224  Identities=9%  Similarity=0.038  Sum_probs=144.8

Q ss_pred             EcCCCCEEEEeeC----------CCceEEEEcCCCeeeEEecCCC-------cceEEEEEcCCCcEEEEEe-C-CCcEEE
Q 021925           18 YNKDGDLLFSCAK----------DHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGS-A-DQTAKL   78 (305)
Q Consensus        18 ~~~~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~s~~-~-dg~v~v   78 (305)
                      ++|||+.|+.+..          +..|.+||..+++.+..+.--.       .....++++|||++|++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998887765          6899999999999998887322       2234789999999998776 3 689999


Q ss_pred             EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeee--eeEEEEEeecccCCCCCceEEEEeccCCCee-EEEEc
Q 021925           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN--SAIHVKRIARDPADQGGESVLILKGPQGRIN-RAVWG  155 (305)
Q Consensus        79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~  155 (305)
                      .|+.+++.+..+..+....-...++....+.+.........  ...... .         .....+.....++. .-.+.
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~---------~~~~vf~~~~~~v~~rP~~~  202 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK-I---------KPTEVFHPEDEYLINHPAYS  202 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE-E---------eeeeeecCCccccccCCceE
Confidence            99999999999987664444444333333333222111100  000000 0         00001111000000 00345


Q ss_pred             C-CCCEEEEeeCCCcEEEEeCCCC-----cEeeeeccc----cCCccceEEEEEcCCCCEEEEEeC----------CCeE
Q 021925          156 P-LNRTIISAGEDAIVRIWDTETG-----KLLKESDKE----TGHKKTITSLAKAADGSHFLTGSL----------DKSA  215 (305)
Q Consensus       156 ~-~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i  215 (305)
                      + +++++....+ |.|.+.|+...     +....+...    .-..+...-++++|+++.+++...          .+.|
T Consensus       203 ~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V  281 (352)
T TIGR02658       203 NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFL  281 (352)
T ss_pred             cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEE
Confidence            5 7887777776 99999996443     222222111    012334445999999998887431          2579


Q ss_pred             EEEEcCCceEEEEEeeCCCeeEEEecCCCC-cEEEeeC
Q 021925          216 KLWDARTLELIKTYVTERPVNAVTMSPLLD-HVCIGEP  252 (305)
Q Consensus       216 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~  252 (305)
                      .++|..+++.+..+..+..+..++++||++ .|++...
T Consensus       282 ~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~  319 (352)
T TIGR02658       282 FVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST  319 (352)
T ss_pred             EEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC
Confidence            999999999999999888999999999999 7777653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=2.9e-14  Score=114.54  Aligned_cols=200  Identities=15%  Similarity=0.167  Sum_probs=154.9

Q ss_pred             EEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC
Q 021925           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS   94 (305)
Q Consensus        15 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~   94 (305)
                      +|+++.-..-|+.++....|+-.+++.|+.+..+....++++++..++-..+|++|+.+|.|-.||.+....+..+....
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence            44555433345555556688999999999999998888999999999988899999999999999999887776655322


Q ss_pred             CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q 021925           95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD  174 (305)
Q Consensus        95 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  174 (305)
                      .|.+.                                         ........|+++.|+.+|-.+++|+.+|.+.|||
T Consensus       218 ~v~s~-----------------------------------------pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD  256 (703)
T KOG2321|consen  218 SVNSH-----------------------------------------PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD  256 (703)
T ss_pred             ccCCC-----------------------------------------ccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence            22110                                         0011234589999999999999999999999999


Q ss_pred             CCCCcEeeeeccccCCccceEEEEEcCC--CCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeC
Q 021925          175 TETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                      +++.+++..-.  .+..-+|..+.|.+.  ++.+++. ....++|||-.+|++...+.....++.+++-|++.++++|-.
T Consensus       257 LRa~~pl~~kd--h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane  333 (703)
T KOG2321|consen  257 LRASKPLLVKD--HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE  333 (703)
T ss_pred             cccCCceeecc--cCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC
Confidence            99988876554  245668899999775  3444443 456799999999999999998888999999999999999977


Q ss_pred             CcEEEE
Q 021925          253 QTIKFM  258 (305)
Q Consensus       253 ~~~~~~  258 (305)
                      +..+.-
T Consensus       334 ~~~m~~  339 (703)
T KOG2321|consen  334 SSKMHT  339 (703)
T ss_pred             CCccee
Confidence            765433

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.61  E-value=1.8e-15  Score=118.34  Aligned_cols=195  Identities=16%  Similarity=0.223  Sum_probs=165.1

Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC
Q 021925           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD  133 (305)
Q Consensus        54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (305)
                      .-..+.++.+|++|+.|+.-|.|..+|..+++....+.....|.++.|-.+..+++++-.....+..             
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-------------  197 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-------------  197 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-------------
Confidence            3467889999999999999999999999999999999999999999999999888887654333322             


Q ss_pred             CCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC
Q 021925          134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK  213 (305)
Q Consensus       134 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  213 (305)
                      ..+..++.++.| ..+..+.|-|..-+|+++++.|.++--|+.+|+.+..+.   ...+.+..|.-+|-+..+-+|...|
T Consensus       198 ~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~qNP~NaVih~GhsnG  273 (545)
T KOG1272|consen  198 NNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR---TGAGRTDVMKQNPYNAVIHLGHSNG  273 (545)
T ss_pred             CCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH---ccCCccchhhcCCccceEEEcCCCc
Confidence            123334444443 467889999999999999999999999999999999887   5677888899999888999999999


Q ss_pred             eEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925          214 SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDI  270 (305)
Q Consensus       214 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  270 (305)
                      +|.+|...+.+++..+. |.++|.++++.++|+++++++-|..     +++|++....
T Consensus       274 tVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-----~kIWDlR~~~  326 (545)
T KOG1272|consen  274 TVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-----VKIWDLRNFY  326 (545)
T ss_pred             eEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-----eeEeeecccc
Confidence            99999999998886665 9999999999999999999999988     6777765544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=1.8e-12  Score=108.29  Aligned_cols=209  Identities=11%  Similarity=0.032  Sum_probs=131.5

Q ss_pred             ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CC--cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEE
Q 021925           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV  109 (305)
Q Consensus        33 ~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  109 (305)
                      .+.++|..... .+.+..+...+.+..|+|||+.|+..+. ++  .|.+||+.+++.......+.......|+|+++.++
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence            56666765443 3455556778999999999998887654 33  58888998887644433455556789999999877


Q ss_pred             EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeecc
Q 021925          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESDK  186 (305)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~  186 (305)
                      ...+.    .+...++.+...     ......+..+.......+|+|+++.|+..+. ++  .|+++|+.+++...... 
T Consensus       278 ~~~~~----~g~~~Iy~~dl~-----tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-  347 (448)
T PRK04792        278 LVLSK----DGQPEIYVVDIA-----TKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-  347 (448)
T ss_pred             EEEeC----CCCeEEEEEECC-----CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-
Confidence            65321    122222222211     1223344445556677899999998876554 33  57777887776443221 


Q ss_pred             ccCCccceEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          187 ETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                         ........+|+|||++|+..+. ++  .|.++|+.+++... +..........|+|+|+.|+..+.++..
T Consensus       348 ---~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~  416 (448)
T PRK04792        348 ---EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGK  416 (448)
T ss_pred             ---CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCc
Confidence               1222345689999999877655 33  46667888776532 2222222355899999998887655543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.60  E-value=6e-14  Score=121.82  Aligned_cols=222  Identities=18%  Similarity=0.238  Sum_probs=152.3

Q ss_pred             EEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCCC-------CeeEEEe-eCCCceEEEEecCCce
Q 021925           37 WFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETG-------AQLFTFN-FDSPARSVDFAVGDKL  107 (305)
Q Consensus        37 w~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~  107 (305)
                      |+. .|..+..+..|...+..++.+++. .+++|||.||+|++||.++-       +...++. ....+.++...+.+..
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            553 478888999999999999998754 89999999999999998633       2333444 6778899999999999


Q ss_pred             EEEeCCcceeeeeeEEEEEeecccC-CCCCceEEEEecc-CCCeeEE-EEcC-CCC-EEEEeeCCCcEEEEeCCCCcEee
Q 021925          108 AVITTDPFMELNSAIHVKRIARDPA-DQGGESVLILKGP-QGRINRA-VWGP-LNR-TIISAGEDAIVRIWDTETGKLLK  182 (305)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~i~~~-~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~  182 (305)
                      +++++.     ++.+.+..+..... ............+ .+.+.++ ++.. .+. .++.+..-+.|..||+++.....
T Consensus      1113 ~Av~t~-----DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1113 FAVSTK-----DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred             EEEEcC-----CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence            988876     34444444433210 0111112222222 2223322 2222 123 67788888999999999877666


Q ss_pred             eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCC---cEEEeeC-CcEE
Q 021925          183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLD---HVCIGEP-QTIK  256 (305)
Q Consensus       183 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~---~l~~~~~-~~~~  256 (305)
                      .++.. ...+.|++++.+|.+.++++|+..|.+-+||++-+.++.++.  +..++..+..+|-.+   ..++++. ...-
T Consensus      1188 ~lk~~-~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1188 RLKNQ-LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred             hhhcC-ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence            66533 345789999999999999999999999999999999998887  456788888776544   4555444 2222


Q ss_pred             EEEEeehhhhhhh
Q 021925          257 FMLLVYLFVLFLD  269 (305)
Q Consensus       257 ~~~~~~~~~~~~~  269 (305)
                          +..|+....
T Consensus      1267 ----vs~wn~~~g 1275 (1431)
T KOG1240|consen 1267 ----VSTWNMETG 1275 (1431)
T ss_pred             ----eeeeecccC
Confidence                555655544

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.59  E-value=9.8e-13  Score=106.14  Aligned_cols=180  Identities=19%  Similarity=0.226  Sum_probs=133.6

Q ss_pred             CCCCEEEEeeCCCceEEEEcCCCeeeEEecC---CCcceEEEEEc--------------------CCCcEEEEEeCCCcE
Q 021925           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRG---HNGAVWCCDVS--------------------RDSMTLITGSADQTA   76 (305)
Q Consensus        20 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~---~~~~v~~i~~~--------------------~~~~~l~s~~~dg~v   76 (305)
                      |-+.++|....||.+++|+...++....+..   -++..++..|.                    .+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567899999999999999998887666542   12233344442                    011233333334444


Q ss_pred             EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      .+++...++....+                                                  .-..|.+.|+++.++.
T Consensus        83 ~~ys~~~g~it~~~--------------------------------------------------st~~h~~~v~~~~~~~  112 (541)
T KOG4547|consen   83 LLYSVAGGEITAKL--------------------------------------------------STDKHYGNVNEILDAQ  112 (541)
T ss_pred             EEEEecCCeEEEEE--------------------------------------------------ecCCCCCcceeeeccc
Confidence            44444433322221                                                  1246889999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCe
Q 021925          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV  235 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v  235 (305)
                      +-..|.+++.|+.+..|+....+.++...   .....+.+++.+|||..+++++  +.|++||+++++.+..|. |.++|
T Consensus       113 ~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v  187 (541)
T KOG4547|consen  113 RLGCIYSVGADLKVVYILEKEKVIIRIWK---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPV  187 (541)
T ss_pred             ccCceEecCCceeEEEEecccceeeeeec---cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcce
Confidence            99999999999999999999999888887   6677899999999999999886  579999999999999998 89999


Q ss_pred             eEEEecCC-----CCcEEEeeCCc
Q 021925          236 NAVTMSPL-----LDHVCIGEPQT  254 (305)
Q Consensus       236 ~~~~~~~~-----~~~l~~~~~~~  254 (305)
                      ++++|..+     |.+++++....
T Consensus       188 ~t~~f~~~~~g~~G~~vLssa~~~  211 (541)
T KOG4547|consen  188 RTLSFTTLIDGIIGKYVLSSAAAE  211 (541)
T ss_pred             EEEEEEEeccccccceeeeccccc
Confidence            99999887     77777654333

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.58  E-value=5.7e-13  Score=100.85  Aligned_cols=241  Identities=14%  Similarity=0.186  Sum_probs=159.4

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-----eeEEecCC------------CcceEEEEEcCCC--cEEEEE
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGH------------NGAVWCCDVSRDS--MTLITG   70 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-----~~~~~~~~------------~~~v~~i~~~~~~--~~l~s~   70 (305)
                      .+-|.++.|...|.+||+|..+|.|.++.-+...     ....++.|            ...|..+.|.+++  ..++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3468999999999999999999999999644322     22333333            3578899999865  456777


Q ss_pred             eCCCcEEEEecCCCCeeE-----------------------------------EEe--eCCCceEEEEecCCceEEEeCC
Q 021925           71 SADQTAKLWNVETGAQLF-----------------------------------TFN--FDSPARSVDFAVGDKLAVITTD  113 (305)
Q Consensus        71 ~~dg~v~vwd~~~~~~~~-----------------------------------~~~--~~~~v~~~~~~~~~~~~~~~~~  113 (305)
                      +.|.+|++|.+.......                                   .+.  |...+.++.++.+...++.+.+
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd  184 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD  184 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence            889999999875321111                                   011  3445667777777777777663


Q ss_pred             cceeeeeeEEEEEeecccCCCCCceEEEEecc-----CCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcEe----ee
Q 021925          114 PFMELNSAIHVKRIARDPADQGGESVLILKGP-----QGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLL----KE  183 (305)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~----~~  183 (305)
                            ..+.+|.+....   ..-.+..++++     ..-|++..|+|.. +.++-.+..|+|++-|++.....    +.
T Consensus       185 ------LRINLWnlei~d---~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  185 ------LRINLWNLEIID---QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             ------eeeeeccccccC---CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence                  445555554321   11223333333     2457888999975 67778888999999999953321    11


Q ss_pred             ecccc---------CCccceEEEEEcCCCCEEEEEeCCCeEEEEEc-CCceEEEEEe-eC------------CCe---eE
Q 021925          184 SDKET---------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDA-RTLELIKTYV-TE------------RPV---NA  237 (305)
Q Consensus       184 ~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~-~~------------~~v---~~  237 (305)
                      +..+.         .--..|..+.|+++|+++++-.. -+|++||+ ...+++.++. |.            ..|   ..
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe  334 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE  334 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence            11110         12246888999999999988653 57999999 4566776665 21            112   45


Q ss_pred             EEecCCCCcEEEeeCCcEEEEEE
Q 021925          238 VTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                      ++|+.++.++++|+-.+...++.
T Consensus       335 c~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  335 CSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             EEEcCCcceEecccccceEEEec
Confidence            78999999999999887754444

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=2.2e-12  Score=99.12  Aligned_cols=258  Identities=15%  Similarity=0.146  Sum_probs=180.8

Q ss_pred             ccceEEEEEcCCCC--EEEEeeCCCceEEEEcCCCeeeEEe------cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925           10 ERPLTYLKYNKDGD--LLFSCAKDHTPTVWFADNGERLGTY------RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus        10 ~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      ...|++++|..+++  .+...+.|..+..+..+.......+      ....++|..+... |+ .|++|-.+|.+.+|..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEec
Confidence            34577777876553  4555556777777777665544332      3345667777665 44 6788888999999998


Q ss_pred             CCCC----eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec---------cCCC
Q 021925           82 ETGA----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG---------PQGR  148 (305)
Q Consensus        82 ~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  148 (305)
                      +.+.    .+..+.....+..+.-.+....+++.++...  ...+.+|++...      +.+..-+.         -.-.
T Consensus       133 k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~--~n~lkiwdle~~------~qiw~aKNvpnD~L~LrVPvW  204 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKEN--INELKIWDLEQS------KQIWSAKNVPNDRLGLRVPVW  204 (412)
T ss_pred             cCCccccccceeeecCCceeeeccCCCCCceEecCchhc--ccceeeeecccc------eeeeeccCCCCccccceeeee
Confidence            7443    4445556677777777776666665433111  234455555422      11111111         1124


Q ss_pred             eeEEEEcCC--CCEEEEeeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE
Q 021925          149 INRAVWGPL--NRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (305)
Q Consensus       149 i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  225 (305)
                      ++++.|-|.  ...|++++.-+.+++||.+.+ +++.++.   -.+.+++++...|+++++++|..-|.+..+|++.++.
T Consensus       205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd---~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl  281 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD---FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL  281 (412)
T ss_pred             eccceecCCCCCceEEEEecceeEEEecCcccCcceeEec---cccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence            677888887  789999999999999999864 4666665   4578999999999999999999999999999999998


Q ss_pred             EEE-Ee-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhccccccccccc
Q 021925          226 IKT-YV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASRKYIY  285 (305)
Q Consensus       226 ~~~-~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (305)
                      +.. +. ..+.+.++..+|.++++++++-|..     +++.+.....++....+.+--..+.
T Consensus       282 ~g~~~kg~tGsirsih~hp~~~~las~GLDRy-----vRIhD~ktrkll~kvYvKs~lt~il  338 (412)
T KOG3881|consen  282 LGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-----VRIHDIKTRKLLHKVYVKSRLTFIL  338 (412)
T ss_pred             eccccCCccCCcceEEEcCCCceEEeecccee-----EEEeecccchhhhhhhhhccccEEE
Confidence            877 44 6778999999999999999999988     6666666666666666654444333

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.56  E-value=3.3e-14  Score=127.56  Aligned_cols=204  Identities=15%  Similarity=0.229  Sum_probs=157.1

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      .++.|-..|.++.=+|...+.+||+.||.|++|....++.+..++. -...|+.+.|+.+|+.+..+..||.+.+|... 
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            3555667788999999999999999999999999988888777652 34789999999999999999999999999987 


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      .+.....+ ++.....+.|..  ..++.+..  ..-+..+..|+......   ...+.  ..|.+.++++++-|..+.|+
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~--s~d~~n~~lwDtl~~~~---~s~v~--~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGR--SSDNRNVCLWDTLLPPM---NSLVH--TCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred             CcceeccccCCccccceeeee--hhhhcccc--CCCCCcccchhcccCcc---cceee--eecCCCceEEEEcCcceEEE
Confidence            44444444 666666777665  23332221  22234455555543221   12233  89999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  231 (305)
                      +|+.+|.|++||++..+.++.++.            ++ ...++++|+..|.++||++.....++++.+
T Consensus      2353 sggr~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             ecCCcCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            999999999999998887777651            34 566899999999999999998888887763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.56  E-value=9.2e-11  Score=89.85  Aligned_cols=244  Identities=11%  Similarity=0.135  Sum_probs=160.6

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCC---CceEEEEcCC--Ceee--EEecCCCcceEEEEEcCCCcEEEEEeC-CCcEE
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADN--GERL--GTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAK   77 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~--~~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~   77 (305)
                      +-.+.+.++-|+|+|+++.|+++-.+   |.|.-|.++.  |+..  ........+-+.+++++++++++++.. .|.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            34566778899999999999988654   6777777664  4432  222222334489999999999988876 68899


Q ss_pred             EEecCC-CC---eeEEEeeCCC----------ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe
Q 021925           78 LWNVET-GA---QLFTFNFDSP----------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (305)
Q Consensus        78 vwd~~~-~~---~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (305)
                      ++-++. |.   .+....+.+.          +....+.|+++++++..-+    ...+.++++..... ..... ..+ 
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG----~Dri~~y~~~dg~L-~~~~~-~~v-  187 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG----TDRIFLYDLDDGKL-TPADP-AEV-  187 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC----CceEEEEEcccCcc-ccccc-ccc-
Confidence            998865 32   2233334444          7888999999999887632    22333334331111 11111 111 


Q ss_pred             ccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCC-cEeeeec------cccCCccceEEEEEcCCCCEEEEEeC-CCe
Q 021925          144 GPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETG-KLLKESD------KETGHKKTITSLAKAADGSHFLTGSL-DKS  214 (305)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~  214 (305)
                      ........+.|+|++++....++ +++|.+|..... ..+..++      ..-........+..++||++|.++.. ...
T Consensus       188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ds  267 (346)
T COG2706         188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDS  267 (346)
T ss_pred             CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCe
Confidence            44556788999999999888776 899999998863 2223222      11123456778899999999988764 346


Q ss_pred             EEEEEcCC--ceEEE--EEe-eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          215 AKLWDART--LELIK--TYV-TERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       215 i~iwd~~~--~~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      |.++.+..  +++..  ... +......+.++|.+++|++++.++-.
T Consensus       268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~  314 (346)
T COG2706         268 IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN  314 (346)
T ss_pred             EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc
Confidence            88887653  33221  122 34447899999999999999766543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.54  E-value=8.4e-13  Score=113.00  Aligned_cols=195  Identities=15%  Similarity=0.200  Sum_probs=150.8

Q ss_pred             EEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc----ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        16 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   91 (305)
                      -.+..+...++.++.+..+.+||...+.....+.....    ...-+.++++.-++++|+.-+.|.+|+....+      
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn------  166 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN------  166 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC------
Confidence            33444566788888899999999887766655542221    12233446666788999999999999976111      


Q ss_pred             eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (305)
Q Consensus        92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  171 (305)
                                                                   .+. .+.+|.+.|.++.++.+|+++++.++|..++
T Consensus       167 ---------------------------------------------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiR  200 (967)
T KOG0974|consen  167 ---------------------------------------------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIR  200 (967)
T ss_pred             ---------------------------------------------Ccc-eecccCCceEEEEEccCCcEEEEEecCccee
Confidence                                                         111 4689999999999999999999999999999


Q ss_pred             EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEE
Q 021925          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCI  249 (305)
Q Consensus       172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~  249 (305)
                      +|++.+.+....  ..-+|...|..+.|.|+  .+++++.|-+.++|+.. ++.+..+.  ....++.++..+....+++
T Consensus       201 lW~i~s~~~~~~--~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT  275 (967)
T KOG0974|consen  201 LWPIDSREVLGC--TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVT  275 (967)
T ss_pred             eeecccccccCc--ccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEe
Confidence            999999887661  12279999999999998  89999999999999755 44444555  4567999999999988999


Q ss_pred             eeCCcEEEEEEeehhhhhhhhhh
Q 021925          250 GEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      ++.|+.     +++|++......
T Consensus       276 ~g~Ds~-----lk~~~l~~r~~e  293 (967)
T KOG0974|consen  276 GGNDST-----LKLWDLNGRGLE  293 (967)
T ss_pred             eccCcc-----hhhhhhhccccc
Confidence            998887     888887765554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.54  E-value=1.2e-10  Score=94.27  Aligned_cols=223  Identities=12%  Similarity=0.124  Sum_probs=139.9

Q ss_pred             cceEEEEEcCCCCEEEEeeC-CCceEEEEcCC-CeeeEE---ec----------CCCcceEEEEEcCCCcEEEEEeC-CC
Q 021925           11 RPLTYLKYNKDGDLLFSCAK-DHTPTVWFADN-GERLGT---YR----------GHNGAVWCCDVSRDSMTLITGSA-DQ   74 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~-~~~~~~---~~----------~~~~~v~~i~~~~~~~~l~s~~~-dg   74 (305)
                      .....++++|++++|+++.. +|.|.++++.. +.....   +.          .......++.++|+++++++... ..
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D  166 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD  166 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence            34567899999999998864 89999999986 433222   21          12345789999999998877644 45


Q ss_pred             cEEEEecCCCC--eeE--E--EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec----
Q 021925           75 TAKLWNVETGA--QLF--T--FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----  144 (305)
Q Consensus        75 ~v~vwd~~~~~--~~~--~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  144 (305)
                      .|.+|++....  ...  .  .......+.+.|+|+++++++....    ...+....+....  ...+.+.....    
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~----s~~v~v~~~~~~~--g~~~~~~~~~~~~~~  240 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL----SNTVSVFDYDPSD--GSLTEIQTISTLPEG  240 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT----TTEEEEEEEETTT--TEEEEEEEEESCETT
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC----CCcEEEEeecccC--CceeEEEEeeecccc
Confidence            79999997665  222  2  2356678999999999998887642    2333333333100  01111111111    


Q ss_pred             c--CCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCC--CcEeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEE
Q 021925          145 P--QGRINRAVWGPLNRTIISAGE-DAIVRIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLW  218 (305)
Q Consensus       145 ~--~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw  218 (305)
                      .  ......++++|+|++|+++.. .+.|.+|++..  ++. ..+..........+.++++|+|++|+++. .++.|.+|
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence            1  125778999999999888775 67899999942  332 22222113345589999999999998877 46789998


Q ss_pred             Ec--CCceEEEEEe--eCCCeeEEEe
Q 021925          219 DA--RTLELIKTYV--TERPVNAVTM  240 (305)
Q Consensus       219 d~--~~~~~~~~~~--~~~~v~~~~~  240 (305)
                      ++  ++|.+...-.  .-....|+.|
T Consensus       320 ~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  320 DIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEeCCCCcEEEecccccCCCCEEEeC
Confidence            76  5666554432  3444566665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.53  E-value=1.4e-11  Score=99.66  Aligned_cols=176  Identities=14%  Similarity=0.092  Sum_probs=122.3

Q ss_pred             CEE-EEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEE
Q 021925           23 DLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF  101 (305)
Q Consensus        23 ~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~  101 (305)
                      +++ ++-..+|.|.+.|..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+.+.+.++....       
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-------   78 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-------   78 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-------
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-------
Confidence            344 445568999999999999999998655444567899999999999999999999999999887765222       


Q ss_pred             ecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCcE
Q 021925          102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKL  180 (305)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~  180 (305)
                                                                    ....++++++|+++++++ .++.+.++|.++.++
T Consensus        79 ----------------------------------------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~  112 (369)
T PF02239_consen   79 ----------------------------------------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP  112 (369)
T ss_dssp             ----------------------------------------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E
T ss_pred             ----------------------------------------------CcceEEEcCCCCEEEEEecCCCceeEeccccccc
Confidence                                                          234577888888888775 589999999999999


Q ss_pred             eeeecccc----CCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceEE--EEEeeCCCeeEEEecCCCCcEEEee
Q 021925          181 LKESDKET----GHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELI--KTYVTERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       181 ~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      ++.+....    .....+..+..+|.+..++.. -..+.|.+.|....+.+  ..+..........|+|++++++++.
T Consensus       113 v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  113 VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEE
T ss_pred             eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecc
Confidence            98876321    134567788888888855554 44588999998776544  3445667788999999999987763

...

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.50  E-value=1.2e-10  Score=92.27  Aligned_cols=157  Identities=13%  Similarity=0.159  Sum_probs=121.2

Q ss_pred             eccCCCeeEEEEcCCCCEEEEeeCCC-cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          143 KGPQGRINRAVWGPLNRTIISAGEDA-IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      -++.+.|.-..+..+++-++.|..|| .+-|+|.++++..+ +.   ..-+.|.++..+|+|++++.+.....+.+.|+.
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e---~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IE---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-ee---CCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            35667788888888888899999999 89999999876544 33   466789999999999999999999999999999


Q ss_pred             CceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh---------hhhcccccccccccc-cccc
Q 021925          222 TLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL---------FYNLYCSASRKYIYD-DLLN  290 (305)
Q Consensus       222 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~~  290 (305)
                      +++....-+ ...-|+.++|||+++++|-+-.++. ..-.+++++...+..         -+....+.+++|+.+ ....
T Consensus       432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy-~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs  510 (668)
T COG4946         432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY-YTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS  510 (668)
T ss_pred             CCCeeEecccccceeEEEEEcCCceeEEEecCcce-eeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc
Confidence            997755444 4556899999999999999877664 333355555433222         234566778888875 3567


Q ss_pred             cCCCCceEEEEEee
Q 021925          291 FDAGPQHFIFYFLF  304 (305)
Q Consensus       291 ~~~~~~~~~~~~~~  304 (305)
                      +|..++.+.|-|+|
T Consensus       511 LdPs~Drv~fnf~f  524 (668)
T COG4946         511 LDPSNDRVIFNFSF  524 (668)
T ss_pred             cCCCCCeeEEEEEE
Confidence            88999999999887

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.50  E-value=5.9e-12  Score=95.40  Aligned_cols=200  Identities=20%  Similarity=0.334  Sum_probs=147.5

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcC----CCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD----NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      ..+++++.++++...|+.|-.+|++.-+.+.    ....++....|...|..+-|+...+.+++.+.|..+.---.+.+.
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~  147 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN  147 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence            4678999999999999999999999988654    344556667899999999999888899999999887666667776


Q ss_pred             eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      .+..+.......++.+.-.  ....+..     .+.+....+.    .....++..+.+|.+.+.+++|.|..+.|++|.
T Consensus       148 ~lg~Y~~~~~~t~~~~d~~--~~fvGd~-----~gqvt~lr~~----~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~  216 (404)
T KOG1409|consen  148 RLGGYNFETPASALQFDAL--YAFVGDH-----SGQITMLKLE----QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA  216 (404)
T ss_pred             cccceEeeccCCCCceeeE--EEEeccc-----ccceEEEEEe----ecCCceEEEEcCcccceEEEEEcCCCcEEEecc
Confidence            6665554444444333322  2222211     1111111111    133467888999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      .|..+.+||+.-.+-...  +..+|...|..+...+--+.+.+++.||.|.+||.+.
T Consensus       217 ~d~~vi~wdigg~~g~~~--el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  217 SDHSVIMWDIGGRKGTAY--ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ccCceEEEeccCCcceee--eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            999999999975443221  1227889999988888788899999999999999763

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.6e-13  Score=108.17  Aligned_cols=217  Identities=17%  Similarity=0.286  Sum_probs=150.6

Q ss_pred             ceEecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCeeeEEe---cCCCc---ceEEEEEcC-CCcEEEEEeCCC
Q 021925            3 PILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTY---RGHNG---AVWCCDVSR-DSMTLITGSADQ   74 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~---~~~~~---~v~~i~~~~-~~~~l~s~~~dg   74 (305)
                      +..+..|.++|..++.-|+. ..+.+++.|+.+.-.|+..+.+...+   ..+..   ....++..| +...+++++.|.
T Consensus       225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq  304 (559)
T KOG1334|consen  225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ  304 (559)
T ss_pred             ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence            45677899999999999954 57889999999999998876543333   23333   578889999 455899999999


Q ss_pred             cEEEEecCCCCee------EEE-------eeCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceE-
Q 021925           75 TAKLWNVETGAQL------FTF-------NFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESV-  139 (305)
Q Consensus        75 ~v~vwd~~~~~~~------~~~-------~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  139 (305)
                      .+++||.+.-...      ..+       ..+-.|++++|+.++ .+++...+..+.+........-...........+ 
T Consensus       305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k  384 (559)
T KOG1334|consen  305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK  384 (559)
T ss_pred             hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence            9999997643221      111       245578999999554 5555544433333211110000000000001222 


Q ss_pred             EEEeccCCC--eeEEE-EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925          140 LILKGPQGR--INRAV-WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (305)
Q Consensus       140 ~~~~~~~~~--i~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  216 (305)
                      ..+++|...  |..+- |-|...++++|+.-|.|.||+-.+++.++.+.   +....|+|+.-+|--..||+++.|..|+
T Consensus       385 ~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me---gDr~VVNCLEpHP~~PvLAsSGid~DVK  461 (559)
T KOG1334|consen  385 RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME---GDRHVVNCLEPHPHLPVLASSGIDHDVK  461 (559)
T ss_pred             hhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh---cccceEeccCCCCCCchhhccCCcccee
Confidence            237788654  44443 56888999999999999999999999888887   5555999999999999999999999999


Q ss_pred             EEEcCC
Q 021925          217 LWDART  222 (305)
Q Consensus       217 iwd~~~  222 (305)
                      ||-..+
T Consensus       462 IWTP~~  467 (559)
T KOG1334|consen  462 IWTPLT  467 (559)
T ss_pred             eecCCc
Confidence            998643

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.48  E-value=3.5e-11  Score=89.43  Aligned_cols=215  Identities=13%  Similarity=0.087  Sum_probs=145.4

Q ss_pred             CCceEEEEcCCCeeeE--Eec-CCCcceEEEEEcC---CCc-EEEEEeCCCcEEEEecCCCCeeEEEe------eCC-Cc
Q 021925           31 DHTPTVWFADNGERLG--TYR-GHNGAVWCCDVSR---DSM-TLITGSADQTAKLWNVETGAQLFTFN------FDS-PA   96 (305)
Q Consensus        31 dg~v~iw~~~~~~~~~--~~~-~~~~~v~~i~~~~---~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~------~~~-~v   96 (305)
                      .|.+.+|++.+.+...  +++ ...+.+..+.|.-   +|. .++-+..+|.|.++..........++      ... ..
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            4678889887655433  221 2334567777753   444 56677778999999876544433333      111 24


Q ss_pred             eEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeC
Q 021925           97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDT  175 (305)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~  175 (305)
                      .++.|++.+..+++........     ....    .....+.++..+.|+-++....|+... +.+.+|+.|+.+..||+
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~-----~v~~----t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~  195 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSIS-----GVYE----TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI  195 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEE-----EEec----ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence            5777888887777665422111     0000    011124456788999999999998655 67889999999999999


Q ss_pred             CC-CcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcC-CceEEEEEeeCCCeeEEEecCCCC--cEEEe
Q 021925          176 ET-GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDAR-TLELIKTYVTERPVNAVTMSPLLD--HVCIG  250 (305)
Q Consensus       176 ~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~  250 (305)
                      +. ++.+..  ...-|...|.++.-+| .+.++++|+.|-.|++||.+ -++++..-...+.|+.+.++|.-.  .++++
T Consensus       196 R~p~~~i~~--n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C  273 (339)
T KOG0280|consen  196 RIPKTFIWH--NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC  273 (339)
T ss_pred             cCCcceeee--cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHH
Confidence            93 333322  2235888999998877 57789999999999999999 578888877888999999999654  45555


Q ss_pred             eCCcEE
Q 021925          251 EPQTIK  256 (305)
Q Consensus       251 ~~~~~~  256 (305)
                      -.+|..
T Consensus       274 Mh~G~k  279 (339)
T KOG0280|consen  274 MHNGAK  279 (339)
T ss_pred             HhcCce
Confidence            555544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.48  E-value=6.1e-10  Score=85.45  Aligned_cols=216  Identities=14%  Similarity=0.136  Sum_probs=142.9

Q ss_pred             CCceEEEEcCCCee-e--EEecCCCcceEEEEEcCCCcEEEEEeC---CCcEEEEecCC--CCeeEEE--e-eCCCceEE
Q 021925           31 DHTPTVWFADNGER-L--GTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVET--GAQLFTF--N-FDSPARSV   99 (305)
Q Consensus        31 dg~v~iw~~~~~~~-~--~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~v~vwd~~~--~~~~~~~--~-~~~~v~~~   99 (305)
                      +.-|++|++.+.+- +  ..+-...+.++-++|+|+++.|.++..   +|.|.-|.+..  |+....-  . ...+...+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            56799999874321 1  122246677899999999999988865   47788887764  4332221  1 34455889


Q ss_pred             EEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC----------eeEEEEcCCCCEEEEeeC-CC
Q 021925          100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR----------INRAVWGPLNRTIISAGE-DA  168 (305)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg  168 (305)
                      ++++++++++++.-.    .+.+.+..+....   ..........|.+.          +....+.|++++|++..- -.
T Consensus        95 svd~~g~~vf~AnY~----~g~v~v~p~~~dG---~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          95 SVDEDGRFVFVANYH----SGSVSVYPLQADG---SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             EECCCCCEEEEEEcc----CceEEEEEcccCC---ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence            999999999887532    2333343333221   11112222233333          778899999999998864 35


Q ss_pred             cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCCc----eEEEEEe-------eCCCee
Q 021925          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTL----ELIKTYV-------TERPVN  236 (305)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~----~~~~~~~-------~~~~v~  236 (305)
                      +|.+|++..++....-+.........+.|.|+|++++..+.++ +++|.+|.....    +.++.+.       ......
T Consensus       168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a  247 (346)
T COG2706         168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA  247 (346)
T ss_pred             eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence            7999999977654433322235567889999999999876665 899999998763    2223222       234567


Q ss_pred             EEEecCCCCcEEEeeCC
Q 021925          237 AVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~  253 (305)
                      ++.++|||++|.++...
T Consensus       248 aIhis~dGrFLYasNRg  264 (346)
T COG2706         248 AIHISPDGRFLYASNRG  264 (346)
T ss_pred             EEEECCCCCEEEEecCC
Confidence            88899999999998543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=2.1e-12  Score=106.88  Aligned_cols=232  Identities=12%  Similarity=0.112  Sum_probs=166.4

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe---------------eeEEecCCCcceEEEEEcCCCcEEEEEeCCC
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---------------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQ   74 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~---------------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg   74 (305)
                      .....|++|+.+..++|+|+.||.+++-.+.+..               .-+++.+|++.|.-+.|+.+.+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            3458899999999999999999999999776421               1245679999999999999888999999999


Q ss_pred             cEEEEecCCCCe---eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925           75 TAKLWNVETGAQ---LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (305)
Q Consensus        75 ~v~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (305)
                      -|.+|-+-.+.-   ...-+..+.|.+++|..+|..+.+...+...+.+.+....+....          +++  .....
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKe----------Lkg--~~l~h  161 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKE----------LKG--QLLAH  161 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchh----------cch--heccc
Confidence            999999876642   222235677899999999999888877655555554433332111          111  12336


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec---------cccCCccceEEEEEc--------CCCCEEEEEeCCCe
Q 021925          152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD---------KETGHKKTITSLAKA--------ADGSHFLTGSLDKS  214 (305)
Q Consensus       152 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~v~~~~~~--------~~~~~l~~~~~dg~  214 (305)
                      +.|++|.+.++.+-..|.+.++|.+..- ...+.         ........+..+.|.        |+...|+.+-..|.
T Consensus       162 v~ws~D~~~~Lf~~ange~hlydnqgnF-~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr  240 (1189)
T KOG2041|consen  162 VLWSEDLEQALFKKANGETHLYDNQGNF-ERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR  240 (1189)
T ss_pred             eeecccHHHHHhhhcCCcEEEecccccH-HHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence            8899999988888889999999976321 11100         000112224444443        57888999999999


Q ss_pred             EEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925          215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       215 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      +.+-.-.+-.....+..+-.+....|+++|..|++++.+.
T Consensus       241 ~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  241 MQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             ehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcc
Confidence            9887655544445555667889999999999999998654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.44  E-value=2.1e-12  Score=110.70  Aligned_cols=148  Identities=25%  Similarity=0.360  Sum_probs=122.9

Q ss_pred             EcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCce
Q 021925           18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPAR   97 (305)
Q Consensus        18 ~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~   97 (305)
                      .+++.-++++|+.-+.|.+|+....+....+.+|.+.|.++.++.||++++++|+|+++++|++++.+...         
T Consensus       141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---------  211 (967)
T KOG0974|consen  141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---------  211 (967)
T ss_pred             ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------
Confidence            45666789999999999999987444444688999999999999999999999999999999999876532         


Q ss_pred             EEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 021925           98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET  177 (305)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  177 (305)
                                                                ...-+|...+..++++|+  +++++++|.+.++|+.. 
T Consensus       212 ------------------------------------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-  246 (967)
T KOG0974|consen  212 ------------------------------------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-  246 (967)
T ss_pred             ------------------------------------------cccccccceeEEEEeccc--eeEEeccceEEEEEecc-
Confidence                                                      112578899999999998  89999999999999765 


Q ss_pred             CcEeeeeccccCC-ccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          178 GKLLKESDKETGH-KKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       178 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      ++.+..+.   .| ...+..++..++...++|++.||.+++||+..
T Consensus       247 ~~~l~~y~---~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  247 GTQLEVYD---EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             cceehhhh---hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            44455555   34 35789999999999999999999999999754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=5e-10  Score=92.45  Aligned_cols=195  Identities=12%  Similarity=0.112  Sum_probs=120.6

Q ss_pred             ceEEEEEcCCCCE-EEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEE-EeCC--CcEEEEecCCC
Q 021925           12 PLTYLKYNKDGDL-LFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT-GSAD--QTAKLWNVETG   84 (305)
Q Consensus        12 ~v~~~~~~~~~~~-l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~d--g~v~vwd~~~~   84 (305)
                      .+....|+|||+. ++..+.+   ..|+++|+.+++...... ..+......|+|||+.|+. .+.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6778999999984 6644433   468888998887654433 5566677889999987654 3333  45777788777


Q ss_pred             CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      +.......+.......|+|+|+.++..++..    +...++.+...    .++..+....  +. ....|+|+|++|+..
T Consensus       268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~----~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~  336 (419)
T PRK04043        268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLN----SGSVEQVVFH--GK-NNSSVSTYKNYIVYS  336 (419)
T ss_pred             cEEEcccCCCccCccEECCCCCEEEEEECCC----CCceEEEEECC----CCCeEeCccC--CC-cCceECCCCCEEEEE
Confidence            6544333444445678999998888776532    12223332221    1122111111  11 124899999988866


Q ss_pred             eCC---------CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCc
Q 021925          165 GED---------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTL  223 (305)
Q Consensus       165 ~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~  223 (305)
                      +..         ..|.+.|+.++.. +.+..   . .......|+|||+.|+..+.++   .+.+.++...
T Consensus       337 ~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~---~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        337 SRETNNEFGKNTFNLYLISTNSDYI-RRLTA---N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EcCCCcccCCCCcEEEEEECCCCCe-EECCC---C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            543         3688889987764 33432   1 2233578999999887665432   3666676543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.2e-10  Score=93.85  Aligned_cols=220  Identities=15%  Similarity=0.208  Sum_probs=147.4

Q ss_pred             ccccceEEEEEcCCCC--EEEE-----eeCCCceEEEEcCCCeeeEEe---cCCCcceEEEEEcCCCc-EEE--EEeCC-
Q 021925            8 GHERPLTYLKYNKDGD--LLFS-----CAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSM-TLI--TGSAD-   73 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~--~l~s-----~~~dg~v~iw~~~~~~~~~~~---~~~~~~v~~i~~~~~~~-~l~--s~~~d-   73 (305)
                      =|...|+.+.+||.+.  .+|+     .|.-..|+||.......-..+   .-....=..+.|++-|. +|+  +..-| 
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk  242 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK  242 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence            3677899999999643  4443     345568999987632211111   11222335677887664 232  22223 


Q ss_pred             --------CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925           74 --------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (305)
Q Consensus        74 --------g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (305)
                              .++++.+++...+...+.-.++|.++.|+++++-+++..+   .+-..+.+.++.         ....+.-.
T Consensus       243 tn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG---fMPAkvtifnlr---------~~~v~df~  310 (566)
T KOG2315|consen  243 TNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYG---FMPAKVTIFNLR---------GKPVFDFP  310 (566)
T ss_pred             CCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEe---cccceEEEEcCC---------CCEeEeCC
Confidence                    3688888886666666668899999999999987777654   122233333331         22233445


Q ss_pred             CCCeeEEEEcCCCCEEEEeeC---CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC------CCeEE
Q 021925          146 QGRINRAVWGPLNRTIISAGE---DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAK  216 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~  216 (305)
                      .++=+++-|+|.|++++.++-   -|.+-+||..+.+++..+.   .  ..-+-+.|+|||++++|++.      |+.++
T Consensus       311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~K  385 (566)
T KOG2315|consen  311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK---A--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIK  385 (566)
T ss_pred             CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc---c--CCceEEEEcCCCcEEEEEeccccEEecCCeE
Confidence            677788999999999997765   4899999999988888775   2  23355799999999998875      77899


Q ss_pred             EEEcCCceEEEEEeeCCCeeEEEecCCCC
Q 021925          217 LWDARTLELIKTYVTERPVNAVTMSPLLD  245 (305)
Q Consensus       217 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  245 (305)
                      ||+.. |..+......+....+.|-|-..
T Consensus       386 iwhyt-G~~l~~~~f~sEL~qv~W~P~~~  413 (566)
T KOG2315|consen  386 IWHYT-GSLLHEKMFKSELLQVEWRPFND  413 (566)
T ss_pred             EEEec-CceeehhhhhHhHhheeeeecCC
Confidence            99975 66666555444677888876543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.41  E-value=6.2e-13  Score=107.03  Aligned_cols=199  Identities=16%  Similarity=0.209  Sum_probs=140.8

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-------CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEE
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~   77 (305)
                      .+.||...|++++--.+.+-+++++.|++|++|.++.       ..+..++..|+.+|.++.|..+-++++++  ||-|.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH  807 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH  807 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence            3679999999998877888999999999999998763       23556788999999999999988877765  78899


Q ss_pred             EEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        78 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      +||.--++.+.....         .|                                         ..+.+..+..-|+
T Consensus       808 lWDPFigr~Laq~~d---------ap-----------------------------------------k~~a~~~ikcl~n  837 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMED---------AP-----------------------------------------KEGAGGNIKCLEN  837 (1034)
T ss_pred             eecccccchhHhhhc---------Cc-----------------------------------------ccCCCceeEeccc
Confidence            999866655443220         00                                         0111111111221


Q ss_pred             --CCEEEE-eeCCCcEEEEeCCCCcEeeeeccc--cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-e
Q 021925          158 --NRTIIS-AGEDAIVRIWDTETGKLLKESDKE--TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T  231 (305)
Q Consensus       158 --~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~  231 (305)
                        ...+.. ++...+|+++|.+.......++..  .+.+..+++++..+.|++++.+-.+|.|.+.|.++|+.+..++ .
T Consensus       838 v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm  917 (1034)
T KOG4190|consen  838 VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM  917 (1034)
T ss_pred             CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence              223333 467899999999987766555432  3456779999999999999999999999999999999998876 3


Q ss_pred             CCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          232 ERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       232 ~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      +.....++ .|..+.++....+...
T Consensus       918 ecdllqla-apsdq~L~~saldHsl  941 (1034)
T KOG4190|consen  918 ECDLLQLA-APSDQALAQSALDHSL  941 (1034)
T ss_pred             cchhhhhc-CchhHHHHhhccccee
Confidence            33333333 3444555555444443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.8e-09  Score=89.16  Aligned_cols=205  Identities=8%  Similarity=-0.061  Sum_probs=127.4

Q ss_pred             ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcE-EEEEeC---CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceE
Q 021925           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT-LITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (305)
Q Consensus        33 ~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  108 (305)
                      .|.+=|.+ |...+.+... +......|+|||+. ++..+.   +..|.++|+.+++.......++......|+|+++.+
T Consensus       170 ~l~~~d~d-g~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~l  247 (419)
T PRK04043        170 NIVLADYT-LTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKL  247 (419)
T ss_pred             eEEEECCC-CCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEE
Confidence            44444543 3333334333 37789999999984 554433   356888899888776665666666778899999877


Q ss_pred             EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeec
Q 021925          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESD  185 (305)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~  185 (305)
                      +......    +...++.+...    . .....+..+........|+|||+.|+..+. .+  .|++.|+.+++..+...
T Consensus       248 a~~~~~~----g~~~Iy~~dl~----~-g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~  318 (419)
T PRK04043        248 LLTMAPK----GQPDIYLYDTN----T-KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF  318 (419)
T ss_pred             EEEEccC----CCcEEEEEECC----C-CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence            7654321    12223332211    1 123334434433445689999998876653 23  68888998776644332


Q ss_pred             cccCCccceEEEEEcCCCCEEEEEeCC---------CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          186 KETGHKKTITSLAKAADGSHFLTGSLD---------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      .  +.  .  ...|+|||+.|+..+..         ..|.+.|+.+++... +..........|+|||+.|+..+..+.
T Consensus       319 ~--g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~  390 (419)
T PRK04043        319 H--GK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGN  390 (419)
T ss_pred             C--CC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCC
Confidence            1  11  1  24899999998766643         368888988876533 332233446899999999887765544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.39  E-value=3.9e-10  Score=90.03  Aligned_cols=245  Identities=14%  Similarity=0.184  Sum_probs=161.6

Q ss_pred             cceEEEEEcCCCCEEEEeeCCC---------------ceEEEEcCCCeeeEEecC-------------------------
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDH---------------TPTVWFADNGERLGTYRG-------------------------   50 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg---------------~v~iw~~~~~~~~~~~~~-------------------------   50 (305)
                      ..|..+.|+|++++|.+-+..+               .+.+||..++..+..+..                         
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~  151 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG  151 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence            3478889999999999876443               489999987765443211                         


Q ss_pred             -----C---------------CcceEEEEEcCCC--cEEEE-----EeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEe
Q 021925           51 -----H---------------NGAVWCCDVSRDS--MTLIT-----GSADQTAKLWNVETGAQLFTFN-FDSPARSVDFA  102 (305)
Q Consensus        51 -----~---------------~~~v~~i~~~~~~--~~l~s-----~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~  102 (305)
                           |               ...|....|+|.+  ..|+.     .+.++.+++|.+..+..+.+.. ....-..+.|.
T Consensus       152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~  231 (561)
T COG5354         152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ  231 (561)
T ss_pred             CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe
Confidence                 1               1456677788843  34443     4567888899888776666555 55556678889


Q ss_pred             cCCceEEEeCCcce----eee--eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe--eCCCcEEEEe
Q 021925          103 VGDKLAVITTDPFM----ELN--SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA--GEDAIVRIWD  174 (305)
Q Consensus       103 ~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~iwd  174 (305)
                      +.|.++++-.....    ...  ..+.+..+.       ...+.....-.++|...+|.|.++.+++.  .++-.+.++|
T Consensus       232 ~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-------e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~  304 (561)
T COG5354         232 VLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-------ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD  304 (561)
T ss_pred             cCCceEEEEEEEeeecccceeccceEEEEeec-------ccccceeccccccceeeeecccCCceeEEecccccceeecc
Confidence            98887776543211    111  223333332       12223333568899999999999877654  4788999999


Q ss_pred             CCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEE-EEeeCCCeeEEEecCCCCcEEEe
Q 021925          175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIK-TYVTERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~  250 (305)
                      ++.. ....+     ....-+.+.|+|.+++++.++-|   |.+-+||......+. .+. .....-+.|+|+++++.++
T Consensus       305 lr~N-l~~~~-----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-~~n~s~~~wspd~qF~~~~  377 (561)
T COG5354         305 LRGN-LRFYF-----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-GLNTSYCDWSPDGQFYDTD  377 (561)
T ss_pred             cccc-eEEec-----CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee-cCCceEeeccCCceEEEec
Confidence            9865 44333     34455678899999999987765   679999987654443 443 3334566899999998887


Q ss_pred             e-CCcEEEEEEeehhhhhhh
Q 021925          251 E-PQTIKFMLLVYLFVLFLD  269 (305)
Q Consensus       251 ~-~~~~~~~~~~~~~~~~~~  269 (305)
                      . +...+....+.+|+....
T Consensus       378 ~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         378 TTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             CCCcccccCcceEEEEecCc
Confidence            4 333355555777765433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.39  E-value=3.2e-11  Score=89.61  Aligned_cols=188  Identities=14%  Similarity=0.133  Sum_probs=130.8

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCee--eEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCC-eeE
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGA-QLF   88 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~-~~~   88 (305)
                      ..++.|++.+..++++-.+|.+.+-+......  ++..+.|.-+.....|+. +.+.+.+|+.|+.+..||++..+ .+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            34678889899999999999998665444433  347889999999999987 45688999999999999998332 111


Q ss_pred             EEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC-CCCEEEEeeCC
Q 021925           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGED  167 (305)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d  167 (305)
                      .                                                   ..+.|...|.++.-+| .+.++++|+.|
T Consensus       204 ~---------------------------------------------------n~kvH~~GV~SI~ss~~~~~~I~TGsYD  232 (339)
T KOG0280|consen  204 H---------------------------------------------------NSKVHTSGVVSIYSSPPKPTYIATGSYD  232 (339)
T ss_pred             e---------------------------------------------------cceeeecceEEEecCCCCCceEEEeccc
Confidence            0                                                   1244667777777775 46799999999


Q ss_pred             CcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCC--CEEEEEeCCCeEEEEEcCCceEE-----EEEe-eCCCeeEE
Q 021925          168 AIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADG--SHFLTGSLDKSAKLWDARTLELI-----KTYV-TERPVNAV  238 (305)
Q Consensus       168 g~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-----~~~~-~~~~v~~~  238 (305)
                      ..|++||.++ ++++..-.    ..+.|..+.++|.-  ..|+++-.+| .+|-+.+.+...     .... |.+-...-
T Consensus       233 e~i~~~DtRnm~kPl~~~~----v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~  307 (339)
T KOG0280|consen  233 ECIRVLDTRNMGKPLFKAK----VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGG  307 (339)
T ss_pred             cceeeeehhcccCccccCc----cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecc
Confidence            9999999994 66665543    45899999999943  3344544455 777776654322     1122 44445555


Q ss_pred             EecCCCCcEEEeeCCcEE
Q 021925          239 TMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~  256 (305)
                      .|......+++++.-+..
T Consensus       308 DWd~~~~~lATCsFYDk~  325 (339)
T KOG0280|consen  308 DWDSKDSFLATCSFYDKK  325 (339)
T ss_pred             ccccccceeeeeeccccc
Confidence            665555668887644443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.7e-10  Score=93.07  Aligned_cols=235  Identities=12%  Similarity=0.148  Sum_probs=149.8

Q ss_pred             ceEEEEEcCCCCEEEEeeC-----------CCceEEEEcCCCeeeEEecCCCc--ce-EEEEEcCCCcEEEEEeCCCcEE
Q 021925           12 PLTYLKYNKDGDLLFSCAK-----------DHTPTVWFADNGERLGTYRGHNG--AV-WCCDVSRDSMTLITGSADQTAK   77 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~-----------dg~v~iw~~~~~~~~~~~~~~~~--~v-~~i~~~~~~~~l~s~~~dg~v~   77 (305)
                      .|.-+.|||+.+||+|=+.           ...+.|||+.+|...+.+....+  .+ .-..||.|++++|--.. ..|.
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis  329 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS  329 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence            3788999999999998653           25799999999999888875322  22 34689999999987766 4699


Q ss_pred             EEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC------------------------
Q 021925           78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA------------------------  132 (305)
Q Consensus        78 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  132 (305)
                      |++..+..++..-. ....|....|+|.+.+++.-+...........+..+.....                        
T Consensus       330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc  409 (698)
T KOG2314|consen  330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC  409 (698)
T ss_pred             EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence            99877644433222 44567888888888888776542211111111111110000                        


Q ss_pred             --------CC-CC--c--eEEEEe---------ccCCCeeEEEEcCCCCEEEEeeC---CCcEEEEeCCC-C---cEeee
Q 021925          133 --------DQ-GG--E--SVLILK---------GPQGRINRAVWGPLNRTIISAGE---DAIVRIWDTET-G---KLLKE  183 (305)
Q Consensus       133 --------~~-~~--~--~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~-~---~~~~~  183 (305)
                              .. .+  .  .+..+.         .-...|...+|-|.|+.+++-+.   ..++.+|-+.+ .   +.+..
T Consensus       410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~  489 (698)
T KOG2314|consen  410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE  489 (698)
T ss_pred             EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh
Confidence                    00 00  0  001111         12345677899999988776543   35788888873 2   22333


Q ss_pred             eccccCCccceEEEEEcCCCCEEEEEe---CCCeEEEEEcCC--ceEEEEEeeCCCeeEEEecCCCCcEEEeeCC
Q 021925          184 SDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDART--LELIKTYVTERPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       184 ~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  253 (305)
                      +.     ....+.+.|+|.|++++.+.   ..|.+.++|+.-  .+.+....| ...+.+.|.|.|+|++++++.
T Consensus       490 ~d-----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  490 LD-----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             hc-----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeeh
Confidence            32     35678899999999987654   578899999874  333333323 346789999999999998643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.38  E-value=1.8e-08  Score=77.83  Aligned_cols=225  Identities=14%  Similarity=0.062  Sum_probs=145.1

Q ss_pred             EEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEc-CCCcEEEEEeCCCcEEEEecCCCCeeEEEee
Q 021925           15 YLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (305)
Q Consensus        15 ~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~   92 (305)
                      ++.|.+ ++.++++-...+.|..|+..+++... +....  ...+++. +++ .|+.+... .+.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeec
Confidence            578998 77777777778999999988776533 33222  6777777 565 45555554 456669988865544443


Q ss_pred             ------CCCceEEEEecCCceEEEeCCcceeeee-eEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE-Ee
Q 021925           93 ------DSPARSVDFAVGDKLAVITTDPFMELNS-AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SA  164 (305)
Q Consensus        93 ------~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~  164 (305)
                            ......+++.++|++.++.......... ...++.+...      ..+......-...+.++|+|+++.|+ +-
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~------~~~~~~~~~~~~pNGi~~s~dg~~lyv~d  152 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD------GKVTVVADGLGFPNGIAFSPDGKTLYVAD  152 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT------SEEEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC------CeEEEEecCcccccceEECCcchheeecc
Confidence                  2346789999999977665542221111 0333333321      22333344456678999999998776 55


Q ss_pred             eCCCcEEEEeCCCCcE----eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-CCeeEEE
Q 021925          165 GEDAIVRIWDTETGKL----LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVT  239 (305)
Q Consensus       165 ~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~  239 (305)
                      +..+.|..+++.....    .+.+.......+..-.+++..+|++.++....+.|.++|.+ |+.+..+... ..+++++
T Consensus       153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~  231 (246)
T PF08450_consen  153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA  231 (246)
T ss_dssp             TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred             cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence            6678899999864221    12221111222357889999999988888889999999987 9888888844 6899999


Q ss_pred             e-cCCCCcEEEee
Q 021925          240 M-SPLLDHVCIGE  251 (305)
Q Consensus       240 ~-~~~~~~l~~~~  251 (305)
                      | -|+.+.|++.+
T Consensus       232 fgg~~~~~L~vTt  244 (246)
T PF08450_consen  232 FGGPDGKTLYVTT  244 (246)
T ss_dssp             EESTTSSEEEEEE
T ss_pred             EECCCCCEEEEEe
Confidence            9 46767666654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.37  E-value=3.4e-12  Score=115.14  Aligned_cols=216  Identities=15%  Similarity=0.141  Sum_probs=159.6

Q ss_pred             eeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe--eCCCceEEEEecCC
Q 021925           28 CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAVGD  105 (305)
Q Consensus        28 ~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~  105 (305)
                      +..++...-|..+.+..  .++.+-..|.++.=+|...+.+||+.||.+++|....++.+..++  .+..++.+.|+..|
T Consensus      2186 ~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG 2263 (2439)
T KOG1064|consen 2186 SNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG 2263 (2439)
T ss_pred             ccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC
Confidence            33444444454332222  223345678888889988899999999999999999999888887  45778889999988


Q ss_pred             ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee---CCCcEEEEeCCCCcEee
Q 021925          106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLK  182 (305)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~  182 (305)
                      +.+.++..     ++.+..|...       .++....+.|......+.|-.  ..+++++   .++.+.+||........
T Consensus      2264 nk~~i~d~-----dg~l~l~q~~-------pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2264 NKFGIVDG-----DGDLSLWQAS-------PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred             Cceeeecc-----CCceeecccC-------CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc
Confidence            87777654     4555555554       466777788988888888875  5566654   46899999975432222


Q ss_pred             eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925          183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       183 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                      .+.  ..|.+.++++++.|..+.|++|+.+|.|++||++..+.++.+..        ++ ...++++|+..|.     ++
T Consensus      2330 ~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~-----ik 2393 (2439)
T KOG1064|consen 2330 LVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGN-----IK 2393 (2439)
T ss_pred             eee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccc-----eE
Confidence            222  47999999999999999999999999999999998888777654        44 5678899988887     77


Q ss_pred             hhhhhhhhhhhhc
Q 021925          263 LFVLFLDILFYNL  275 (305)
Q Consensus       263 ~~~~~~~~~~~~~  275 (305)
                      +|.+....+++++
T Consensus      2394 Iw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2394 IWRLSEFGLLHTF 2406 (2439)
T ss_pred             EEEccccchhhcC
Confidence            7877666555443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=7.9e-10  Score=89.28  Aligned_cols=230  Identities=17%  Similarity=0.207  Sum_probs=142.3

Q ss_pred             EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-----------CCcEEEEecC
Q 021925           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-----------DQTAKLWNVE   82 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-----------dg~v~vwd~~   82 (305)
                      +-+.|||-|.||+|--..| |.+|--++-..++++. |.+ |.-+.|||+.++|+|-+.           ...+.|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            5689999999999987664 7899877666666665 654 899999999999998653           2569999999


Q ss_pred             CCCeeEEEee---CCC-ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC----------CCCceE---------
Q 021925           83 TGAQLFTFNF---DSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD----------QGGESV---------  139 (305)
Q Consensus        83 ~~~~~~~~~~---~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---------  139 (305)
                      +|.....+..   +.. -.-+.|+.++++++....+.+.+...-....+......          .....+         
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~  370 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN  370 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence            9998888874   112 23468999999999877655554443322222111000          000000         


Q ss_pred             ----------------EEEeccCCCeeEEEEcCCCCEEEEee----------CCCcEEEEeCCCCc-EeeeeccccCCcc
Q 021925          140 ----------------LILKGPQGRINRAVWGPLNRTIISAG----------EDAIVRIWDTETGK-LLKESDKETGHKK  192 (305)
Q Consensus       140 ----------------~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~-~~~~~~~~~~~~~  192 (305)
                                      +...-+.-.=..+.|-.+|.+|+.--          .-..+.|+.++... ++..+    ....
T Consensus       371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v----elke  446 (698)
T KOG2314|consen  371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV----ELKE  446 (698)
T ss_pred             CcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee----ecch
Confidence                            00001111112244555666665321          11124444444332 22222    2567


Q ss_pred             ceEEEEEcCCCCEEEEEeC---CCeEEEEEcCC-c---eEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925          193 TITSLAKAADGSHFLTGSL---DKSAKLWDART-L---ELIKTYVTERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       193 ~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      .|...+|-|.|+.+++-+.   ..++.+|.+++ .   +.+..+.. ...+.+.|+|.|++++++.
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~  511 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAA  511 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEE
Confidence            8889999999988776543   35688888773 2   23333332 4568999999999998874

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=7e-11  Score=89.78  Aligned_cols=208  Identities=16%  Similarity=0.232  Sum_probs=134.4

Q ss_pred             ccceEEEEEcCCCC--EEEEeeCCCceEEEEcCCCeee-----------------------------------EE-ecCC
Q 021925           10 ERPLTYLKYNKDGD--LLFSCAKDHTPTVWFADNGERL-----------------------------------GT-YRGH   51 (305)
Q Consensus        10 ~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~~~~~~~~-----------------------------------~~-~~~~   51 (305)
                      .+.|+.+.|.++++  .++..+.|.+|++|.+......                                   +. -.+|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            35688999988654  6777788999999977532110                                   00 1368


Q ss_pred             CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe---------eCCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925           52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN---------FDSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (305)
Q Consensus        52 ~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (305)
                      .-.|.+|.++.|+..++++. |=.|.+|+++-......+-         ...-|++..|+|....+++-+.    ..+.+
T Consensus       164 tyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS----SKGtI  238 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS----SKGTI  238 (433)
T ss_pred             eeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec----CCCcE
Confidence            88999999999999988864 5789999987443322222         2234778888885543333221    13445


Q ss_pred             EEEEeecccC----------CCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCcEeeeeccccC--
Q 021925          123 HVKRIARDPA----------DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETG--  189 (305)
Q Consensus       123 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~--  189 (305)
                      ++-+++....          ...+....-+.+--..|..+.|+++|+|+++-.. -+|++||+. ..+++..++....  
T Consensus       239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr  317 (433)
T KOG1354|consen  239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR  317 (433)
T ss_pred             EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence            5555442211          1111112222333457889999999999987654 689999994 4566666552110  


Q ss_pred             -------Ccc---ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 021925          190 -------HKK---TITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (305)
Q Consensus       190 -------~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  223 (305)
                             ...   .-..++|+.++..++||+.....++++...|
T Consensus       318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                   011   2245789999999999999999999996544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.35  E-value=3.6e-11  Score=93.00  Aligned_cols=165  Identities=16%  Similarity=0.202  Sum_probs=118.5

Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe----eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeec
Q 021925           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ----LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR  129 (305)
Q Consensus        54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (305)
                      ....+..++.++++|++..+....++++.....    ......+.....+.+..+.....++..     .+.....++..
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dk-----agD~~~~di~s  138 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADK-----AGDVYSFDILS  138 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEee-----cCCceeeeeec
Confidence            344556678889999988888877887765443    333335556666666665555444432     12222222221


Q ss_pred             ccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE
Q 021925          130 DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG  209 (305)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  209 (305)
                      ...    .....+-+|-+.++.++++||+++|+++..|..|++-....-..+..+..  +|..-|..++.-++ ..|+++
T Consensus       139 ~~~----~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~~~-~~LlS~  211 (390)
T KOG3914|consen  139 ADS----GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLTDN-YLLLSG  211 (390)
T ss_pred             ccc----cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeeccC-ceeeec
Confidence            111    33445678999999999999999999999999999988876666666653  79999999998865 458999


Q ss_pred             eCCCeEEEEEcCCceEEEEEe
Q 021925          210 SLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       210 ~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      |.|+++++||+++|+.+.++.
T Consensus       212 sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  212 SGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCCCcEEEEecccCCcccccc
Confidence            999999999999999887765

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.33  E-value=1.1e-09  Score=80.65  Aligned_cols=223  Identities=9%  Similarity=-0.017  Sum_probs=142.0

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeE-EecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCeeEEEeeC-CCceEE
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFD-SPARSV   99 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~   99 (305)
                      .+||.|+..|...+|...+.+... ....|...|+-+.=.. ....+..++.|.++++.+++.+........+ -...++
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~  164 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL  164 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence            479999999999999988665433 2333443332211111 2234666788899999988755433333322 348899


Q ss_pred             EEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE-EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 021925          100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG  178 (305)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  178 (305)
                      +++++++++++.++...     +..+.+....    ..... ......+.-.+..|+.....+|++.+||++.|||++..
T Consensus       165 ~~snd~~~~~~Vgds~~-----Vf~y~id~~s----ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  165 HYSNDPSWGSSVGDSRR-----VFRYAIDDES----EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             EEcCCCceEEEecCCCc-----ceEEEeCCcc----ceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence            99999999998876332     2222222111    11111 23334455677889999999999999999999999974


Q ss_pred             cEeee-ec-cccCCccceEEEEEcCCCC--EEEEEeCCCeEEEEEcCCceEEEEEeeC---------CCeeEEEecCCCC
Q 021925          179 KLLKE-SD-KETGHKKTITSLAKAADGS--HFLTGSLDKSAKLWDARTLELIKTYVTE---------RPVNAVTMSPLLD  245 (305)
Q Consensus       179 ~~~~~-~~-~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~v~~~~~~~~~~  245 (305)
                      ..... .. ....|.+.++.+.|++-|.  +|+..-.-+.+.+.|+++++..+.+...         ..+....|+.++.
T Consensus       236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~  315 (344)
T KOG4532|consen  236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE  315 (344)
T ss_pred             ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence            43221 11 1235889999999998664  3555556788999999998766655421         1255556666666


Q ss_pred             cEEEeeCCc
Q 021925          246 HVCIGEPQT  254 (305)
Q Consensus       246 ~l~~~~~~~  254 (305)
                      .+.+++...
T Consensus       316 s~~v~~e~~  324 (344)
T KOG4532|consen  316 SNDVKNELQ  324 (344)
T ss_pred             ccccccchh
Confidence            666555443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.33  E-value=2.7e-09  Score=79.62  Aligned_cols=192  Identities=15%  Similarity=0.123  Sum_probs=119.2

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-------CCcceEEEEEcCC------CcEEEEEeCCCcEEEE
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRD------SMTLITGSADQTAKLW   79 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-------~~~~v~~i~~~~~------~~~l~s~~~dg~v~vw   79 (305)
                      =+.++||||+..||.+...|+|+++|+.. ..+..+..       -...|.++.|.+-      ...|++-..+|.++-+
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            35689999999999999999999999874 33333332       2356788888652      1256666778888877


Q ss_pred             ecC-----CCCeeEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCee
Q 021925           80 NVE-----TGAQLFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (305)
Q Consensus        80 d~~-----~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (305)
                      -+.     ..+...++.    .+..|.++.++|..+++++++.....-..                     -+.....++
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~---------------------s~a~~~GLt  183 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGM---------------------SKASSCGLT  183 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcc---------------------ccccccCce
Confidence            653     223444544    46689999999999988887642221000                     000111111


Q ss_pred             EEEEc---CCCCEEEEeeCCCc------EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          151 RAVWG---PLNRTIISAGEDAI------VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       151 ~~~~~---~~~~~l~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      +-..-   |..+. ++...|+.      -.+|.+-+.+.....   ......|..|..||||+.||+...+|.|.+|++.
T Consensus       184 aWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~~---~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  184 AWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSRQ---GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             EEEEcCCCCcEEE-ccccCccccccccccceeeccceeeeecc---ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence            11111   11111 12222211      123333222211111   1356789999999999999999999999999999


Q ss_pred             CceEEEEEe
Q 021925          222 TLELIKTYV  230 (305)
Q Consensus       222 ~~~~~~~~~  230 (305)
                      +.++...+.
T Consensus       260 sL~~~~~W~  268 (282)
T PF15492_consen  260 SLRLQRSWK  268 (282)
T ss_pred             cchhhcccc
Confidence            998888876

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=9.1e-11  Score=97.49  Aligned_cols=237  Identities=11%  Similarity=0.110  Sum_probs=159.3

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      +|.||.+.|.-+.|+.+.+.|-|+..+|.|.+|-+-.++....+.  ..++-|.+++|..||..+.....||.|.+=.++
T Consensus        66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd  145 (1189)
T KOG2041|consen   66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD  145 (1189)
T ss_pred             hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence            588999999999999999999999999999999988776443332  345779999999999999999999999887776


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC-CCce----EEEEeccCCCeeEEEEc-
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-GGES----VLILKGPQGRINRAVWG-  155 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~i~~~~~~-  155 (305)
                      ..+ +.--. .......+.|++|.+.++..-..     +...+++........ ....    ...+......|..+.|. 
T Consensus       146 GNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~an-----ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~  219 (1189)
T KOG2041|consen  146 GNR-IWGKELKGQLLAHVLWSEDLEQALFKKAN-----GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNT  219 (1189)
T ss_pred             cce-ecchhcchheccceeecccHHHHHhhhcC-----CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeecc
Confidence            433 22222 23334578888887766654431     222222211110000 0000    00111112224444443 


Q ss_pred             -------CCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC---------eEEEEE
Q 021925          156 -------PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---------SAKLWD  219 (305)
Q Consensus       156 -------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------~i~iwd  219 (305)
                             |+...|+.+..+|.+.|..-.+......+.    ..-.+..+.|+++|..|+.++.|.         .|.++.
T Consensus       220 g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys  295 (1189)
T KOG2041|consen  220 GPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS  295 (1189)
T ss_pred             CccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence                   577899999999999887655443333332    336788899999999999988642         466665


Q ss_pred             cCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeC
Q 021925          220 ARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       220 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                       .-|+.+.+++ .+..|++++|-..|-.++.+-+
T Consensus       296 -p~G~i~gtlkvpg~~It~lsWEg~gLriA~Avd  328 (1189)
T KOG2041|consen  296 -PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVD  328 (1189)
T ss_pred             -cchhheEEEecCCceeeeeEEcCCceEEEEEec
Confidence             3477788888 6778999999998877777653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.32  E-value=3e-11  Score=90.69  Aligned_cols=245  Identities=15%  Similarity=0.170  Sum_probs=146.2

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-----eeEEecCCC------------cceEEEEEcCCC--cEEEE
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHN------------GAVWCCDVSRDS--MTLIT   69 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-----~~~~~~~~~------------~~v~~i~~~~~~--~~l~s   69 (305)
                      ..+.|+++.|...|.+|++|...|.|.++..+...     ....+++|.            ..|..+.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34679999999999999999999999999755422     223344443            467888887754  35666


Q ss_pred             EeCCCcEEEEecCCCCe--eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE-EeccC
Q 021925           70 GSADQTAKLWNVETGAQ--LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQ  146 (305)
Q Consensus        70 ~~~dg~v~vwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  146 (305)
                      .+.|++|++|.+.....  +..-.....+   .+...|.+ ...        ..+....+..........+.+. -..|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~---~~~~~g~~-~s~--------~~l~lprls~hd~iiaa~p~rvyaNaH~  172 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSF---HSPMGGPL-TST--------KELLLPRLSEHDEIIAAKPCRVYANAHP  172 (460)
T ss_pred             ecCCceeeeeeeecccchhhhcccccccc---ccccCCCc-CCH--------HHhhcccccccceEEEeccceeccccce
Confidence            77899999999865422  1111111111   00001100 000        0000000000000000012222 25678


Q ss_pred             CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCC-----ccceEEEEEcCCC-CEEEEEeCCCeEEEEEc
Q 021925          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH-----KKTITSLAKAADG-SHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~  220 (305)
                      -.|.++.+..|...++++ .|=.|.+|++........+....+|     ...|++..|+|.. ..+.-.++.|.|++-|+
T Consensus       173 yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl  251 (460)
T COG5170         173 YHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL  251 (460)
T ss_pred             eEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence            889999999998877766 4678999998754332222211123     3468889999954 45667778999999999


Q ss_pred             CCce------EEEEEe-----------eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          221 RTLE------LIKTYV-----------TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       221 ~~~~------~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      +...      .+....           .-+.|..+.|+++|+++++-+      +.++++|+..++...
T Consensus       252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd------yltvkiwDvnm~k~p  314 (460)
T COG5170         252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD------YLTVKIWDVNMAKNP  314 (460)
T ss_pred             hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec------cceEEEEecccccCC
Confidence            8421      111111           123578899999999998744      334888887776543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.30  E-value=2e-09  Score=85.55  Aligned_cols=172  Identities=13%  Similarity=0.145  Sum_probs=132.5

Q ss_pred             CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC-cEEEEecCCCCeeEEEeeCCCceEE
Q 021925           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ-TAKLWNVETGAQLFTFNFDSPARSV   99 (305)
Q Consensus        21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~v~~~   99 (305)
                      +|.+++..| .|...|.+...+-.++ + +|.+.|.-..+..+++-++.|..|| .+-|+|.++++...           
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-----------  396 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-----------  396 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-----------
Confidence            677888776 5666776654444332 2 4777899888988888899999999 89999988765432           


Q ss_pred             EEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 021925          100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK  179 (305)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  179 (305)
                                                                +.+.-+.|.++..+|+|++++.+.....+.+.|+.+++
T Consensus       397 ------------------------------------------~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         397 ------------------------------------------IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             ------------------------------------------eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence                                                      23445678889999999999999999999999999987


Q ss_pred             EeeeeccccCCccceEEEEEcCCCCEEEEEeCCC----eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925          180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDK----SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       180 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      ....-+   ...+-|+.++|+|+++++|-+--+|    .|+++|+..++........+.=.+-+|.|++++|..-+
T Consensus       435 v~~idk---S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         435 VRLIDK---SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             eeEecc---cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            654433   4567899999999999999877665    59999999888766554444446778999999877644

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.25  E-value=5.7e-10  Score=90.51  Aligned_cols=145  Identities=14%  Similarity=0.197  Sum_probs=119.0

Q ss_pred             CCCEEEEeeCCCceEEEEcCCCeeeEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceE
Q 021925           21 DGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARS   98 (305)
Q Consensus        21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~   98 (305)
                      +...++-|...|.|.+|+...++....+.  .|.+.|.++.++.+-..|.|++.|+.+..|+..+.+..+.+        
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~--------  140 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW--------  140 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee--------
Confidence            34467778889999999999999888776  59999999999999899999999999999998876655443        


Q ss_pred             EEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 021925           99 VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG  178 (305)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  178 (305)
                                                                  +..+..+.+++.+||++.+++++  +.|++||++++
T Consensus       141 --------------------------------------------~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k  174 (541)
T KOG4547|consen  141 --------------------------------------------KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK  174 (541)
T ss_pred             --------------------------------------------ccCCCccceEEEcCCCCEEEecc--ceEEEEEccCc
Confidence                                                        33345567789999999999988  78999999999


Q ss_pred             cEeeeeccccCCccceEEEEEcCC-----CCEEEE-EeCCCeEEEEEcCC
Q 021925          179 KLLKESDKETGHKKTITSLAKAAD-----GSHFLT-GSLDKSAKLWDART  222 (305)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~~~dg~i~iwd~~~  222 (305)
                      +.+..+.   +|.++|+++.|-.+     |.++++ ...+.-+.+|-.+.
T Consensus       175 evv~~ft---gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  175 EVVITFT---GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eEEEEec---CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999998   99999999999876     566554 44455677776554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.25  E-value=1.3e-08  Score=91.53  Aligned_cols=232  Identities=14%  Similarity=0.121  Sum_probs=150.3

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEE----EcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVW----FADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      .+.|.++.+-++...++.+..+|.|.+.    +..+.. +.....-...|.+++||||+..|+.++.+++|.+.+-. .+
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd  152 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FD  152 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ce
Confidence            4579999999999999999999999999    444332 22223346789999999999999999999998887532 10


Q ss_pred             eeEE-------------------------------------------------EeeCCCceEEEEecCCceEEEeCCcce
Q 021925           86 QLFT-------------------------------------------------FNFDSPARSVDFAVGDKLAVITTDPFM  116 (305)
Q Consensus        86 ~~~~-------------------------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~  116 (305)
                      .+..                                                 +.....-..++|..||.++++..-...
T Consensus       153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~  232 (928)
T PF04762_consen  153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE  232 (928)
T ss_pred             EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence            0000                                                 002224456788889999888753111


Q ss_pred             ee-eeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC---CCcEEEEeCCCCcEeeeecccc-CCc
Q 021925          117 EL-NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIWDTETGKLLKESDKET-GHK  191 (305)
Q Consensus       117 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~-~~~  191 (305)
                      .- ...+++|+-       .+......+.-.+--.+++|.|.|++||+.-.   ...|.+|.. +|-.-..+.... ...
T Consensus       233 ~~~~R~iRVy~R-------eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~  304 (928)
T PF04762_consen  233 TGSRRVIRVYSR-------EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEE  304 (928)
T ss_pred             CCceeEEEEECC-------CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCC
Confidence            11 222222222       12222222333344457899999999998764   356777774 444444443221 346


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE--EEEEe--eCCCeeEEEecCCCCc-EEEeeC
Q 021925          192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYV--TERPVNAVTMSPLLDH-VCIGEP  252 (305)
Q Consensus       192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~--~~~~v~~~~~~~~~~~-l~~~~~  252 (305)
                      ..|..+.|++|+..||..-.|. |.+|-..+..-  .+++.  ....+..+.|+|...+ |.+.+.
T Consensus       305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~  369 (928)
T PF04762_consen  305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTS  369 (928)
T ss_pred             ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEec
Confidence            6899999999999999977665 99999887642  22333  3445666999997655 555544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.24  E-value=1.3e-07  Score=86.82  Aligned_cols=237  Identities=12%  Similarity=0.018  Sum_probs=139.3

Q ss_pred             EEEEEcCC-CCEEEEeeCCCceEEEEcCCCeeeEEecC-C-------------CcceEEEEEcCCCcEEEEEe-CCCcEE
Q 021925           14 TYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRG-H-------------NGAVWCCDVSRDSMTLITGS-ADQTAK   77 (305)
Q Consensus        14 ~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~-------------~~~v~~i~~~~~~~~l~s~~-~dg~v~   77 (305)
                      ..++++++ ++.+++-+.++.|+++|.. ++.+..+.+ .             -.....+++.++++.|+++. .++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788874 6677777778899999975 444443332 1             12358899999887666654 457799


Q ss_pred             EEecCCCCeeEEEee------------------CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC---CCCC
Q 021925           78 LWNVETGAQLFTFNF------------------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---DQGG  136 (305)
Q Consensus        78 vwd~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  136 (305)
                      ++|..++. +.++..                  -.....++++|++..++++...    ...+..++......   ...+
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~----~~~I~v~d~~~g~v~~~~G~G  724 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG----QHQIWEYNISDGVTRVFSGDG  724 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC----CCeEEEEECCCCeEEEEecCC
Confidence            99987654 333321                  1234678999854444433221    11122221110000   0000


Q ss_pred             ce-----EEEEeccCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCcEeeeec----------ccc--------CCcc
Q 021925          137 ES-----VLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESD----------KET--------GHKK  192 (305)
Q Consensus       137 ~~-----~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~----------~~~--------~~~~  192 (305)
                      ..     .......-.....++++|+++.|+ +-+.++.|++||+.++.......          ...        ..-.
T Consensus       725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~  804 (1057)
T PLN02919        725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ  804 (1057)
T ss_pred             ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence            00     000001123456799999998555 55567999999998765321100          000        0112


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC--------------CCeeEEEecCCCCcEEEeeCCcEE
Q 021925          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------------RPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      ....++++++|+.+++-+.+++|++||..++.........              .....++++++|+.+++.+.++.+
T Consensus       805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence            3468899999998888889999999999887665433211              246789999999876666666653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.22  E-value=3.7e-09  Score=84.62  Aligned_cols=226  Identities=20%  Similarity=0.236  Sum_probs=152.6

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---------------
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---------------   73 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---------------   73 (305)
                      -.-++..++|||.|.+|++.... .|.+|..+.+..+.++. | ..|..+.|+|++++|.+=+..               
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            45578899999999999987655 68999988877666665 4 358999999999999986543               


Q ss_pred             CcEEEEecCCCCeeEEEeeCCC---ce-EEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe
Q 021925           74 QTAKLWNVETGAQLFTFNFDSP---AR-SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI  149 (305)
Q Consensus        74 g~v~vwd~~~~~~~~~~~~~~~---v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (305)
                      ..+.+||+.++..+..+.....   .. -+.|+.++++++-...      ..+.+.++.....   ..+...++  ...|
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~------~sl~i~e~t~n~~---~~p~~~lr--~~gi  176 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG------SSLYIHEITDNIE---EHPFKNLR--PVGI  176 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc------CeEEEEecCCccc---cCchhhcc--ccce
Confidence            3599999999999988873332   33 6778888877665432      3344444321111   11111111  3567


Q ss_pred             eEEEEcCCC--CEEEE-----eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe-----------C
Q 021925          150 NRAVWGPLN--RTIIS-----AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-----------L  211 (305)
Q Consensus       150 ~~~~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~  211 (305)
                      ....|+|.+  ..|+.     .+.++++++|.+..++.+.+....   ...-..+.|.+.|++|++--           .
T Consensus       177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf---k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF---KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE---eecccEEEEecCCceEEEEEEEeeecccceec
Confidence            788889874  33442     456789999999877666544321   12224578889888865421           1


Q ss_pred             CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925          212 DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       212 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      +..+++++++.....-.....++|..++|.|.++.+++.+
T Consensus       254 esnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~  293 (561)
T COG5354         254 ESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVIS  293 (561)
T ss_pred             cceEEEEeecccccceeccccccceeeeecccCCceeEEe
Confidence            3568889888444433334678999999999998877765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.22  E-value=8.9e-08  Score=76.30  Aligned_cols=203  Identities=12%  Similarity=0.039  Sum_probs=122.6

Q ss_pred             EEEEEcCCCCEEEEee-C-CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE-
Q 021925           14 TYLKYNKDGDLLFSCA-K-DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-   90 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~-~-dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-   90 (305)
                      ..++++|||++|+... . +..|-+.|+.+++.+.++.- .+...-...+++..+  +-+.||......+.+....... 
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEee
Confidence            4788999999998765 3 68999999999999988874 222222333322222  2233444444333222111111 


Q ss_pred             -ee--C--CCc-eEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-------eccCCCeeEEEEcC
Q 021925           91 -NF--D--SPA-RSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-------KGPQGRINRAVWGP  156 (305)
Q Consensus        91 -~~--~--~~v-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~  156 (305)
                       ..  .  .++ ..-.+.+ ++..++++..+.+      ...++..... ...+....+       .-..+.+.-++++|
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V------~~id~~~~~~-~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~  257 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKI------FQIDLSSGDA-KFLPAIEAFTEAEKADGWRPGGWQQVAYHR  257 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecCCeE------EEEecCCCcc-eecceeeeccccccccccCCCcceeEEEcC
Confidence             11  1  000 0113455 7777777765322      2222111000 000111111       01233444599999


Q ss_pred             CCCEEEEee----------CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEe-CCCeEEEEEcCCce
Q 021925          157 LNRTIISAG----------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS-LDKSAKLWDARTLE  224 (305)
Q Consensus       157 ~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~  224 (305)
                      +++.++...          ..+.|.++|..+++.+..+.    -...+..++++||++ .|++.+ .++.|.+.|..+++
T Consensus       258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~----vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE----LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe----CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence            998888743          12579999999999999886    456889999999999 777666 57889999999999


Q ss_pred             EEEEEe
Q 021925          225 LIKTYV  230 (305)
Q Consensus       225 ~~~~~~  230 (305)
                      .++++.
T Consensus       334 ~i~~i~  339 (352)
T TIGR02658       334 ELSSVN  339 (352)
T ss_pred             EEeeec
Confidence            999884

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.21  E-value=8.6e-10  Score=83.93  Aligned_cols=210  Identities=16%  Similarity=0.192  Sum_probs=142.8

Q ss_pred             eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe-cCCCCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeee
Q 021925           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN-VETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELN  119 (305)
Q Consensus        43 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~  119 (305)
                      ..+..+++|.+.|+....-|..+-+++.+.|.+++||- .+.++.-..+.  .+.+++++.+.+....++++-+..    
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng----   90 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG----   90 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc----
Confidence            34567789999999998889888899999999999994 44555444444  788899999999999888876522    


Q ss_pred             eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC---------------------
Q 021925          120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG---------------------  178 (305)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------------------  178 (305)
                       .+......  ..-+.....+....|...+..+.|+.....+++.+.|..+.---.+.+                     
T Consensus        91 -tvtefs~s--edfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~  167 (404)
T KOG1409|consen   91 -TVTEFALS--EDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALY  167 (404)
T ss_pred             -eEEEEEhh--hhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEE
Confidence             22111111  111222334445566666666666655555555555543322111111                     


Q ss_pred             --------------------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE--EEEeeCCCee
Q 021925          179 --------------------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYVTERPVN  236 (305)
Q Consensus       179 --------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~v~  236 (305)
                                          .++..   ..+|...+.+++|.+....|.+|..|..+.+||+--.+-+  ....|...|.
T Consensus       168 ~fvGd~~gqvt~lr~~~~~~~~i~~---~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~  244 (404)
T KOG1409|consen  168 AFVGDHSGQITMLKLEQNGCQLITT---FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ  244 (404)
T ss_pred             EEecccccceEEEEEeecCCceEEE---EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence                                11222   2379999999999999999999999999999998644333  3333788899


Q ss_pred             EEEecCCCCcEEEeeCCcEEEEEEee
Q 021925          237 AVTMSPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                      .+...+--+.+.+++.|+.+..+...
T Consensus       245 ~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  245 ALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             hhhhhhhheeeeeccCCCeEEEEecc
Confidence            98888888889999999886555433

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.21  E-value=2.8e-08  Score=89.54  Aligned_cols=238  Identities=14%  Similarity=0.138  Sum_probs=152.3

Q ss_pred             cceEEEEEcCCCCEEEEeeC--CC--ceEEEEcCCC---eeeEEec-----CCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925           11 RPLTYLKYNKDGDLLFSCAK--DH--TPTVWFADNG---ERLGTYR-----GHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~--dg--~v~iw~~~~~---~~~~~~~-----~~~~~v~~i~~~~~~~~l~s~~~dg~v~v   78 (305)
                      ..+...+|.+....+..+..  ..  .|.+-.....   +.+..+.     ...+.|.++.+.++...++.+..+|.|.+
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~  101 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL  101 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence            35777888876554433322  22  2333322222   2333333     23468999999999999999999999999


Q ss_pred             E----ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeec---ccCC------------------
Q 021925           79 W----NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR---DPAD------------------  133 (305)
Q Consensus        79 w----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------  133 (305)
                      .    +..+......-..+..+.+++|+||+..++..++....+.-......+..   ....                  
T Consensus       102 ~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF  181 (928)
T PF04762_consen  102 VREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQF  181 (928)
T ss_pred             EEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCcc
Confidence            9    66666555555688999999999999999888754222211111111100   0000                  


Q ss_pred             --CCCceE--------------EEEeccCCCeeEEEEcCCCCEEEEeeC---C---CcEEEEeCCCCcEeeeeccccCCc
Q 021925          134 --QGGESV--------------LILKGPQGRINRAVWGPLNRTIISAGE---D---AIVRIWDTETGKLLKESDKETGHK  191 (305)
Q Consensus       134 --~~~~~~--------------~~~~~~~~~i~~~~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~  191 (305)
                        ..++..              ..+. ....-..++|-.||.++|+.+.   .   ..+++|+.. |......+.   -.
T Consensus       182 ~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~---v~  256 (928)
T PF04762_consen  182 HGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP---VD  256 (928)
T ss_pred             CcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc---CC
Confidence              001100              0111 3445667999999999998774   3   479999965 665555542   23


Q ss_pred             cceEEEEEcCCCCEEEEEeC---CCeEEEEEcCCceEEEEEe-----eCCCeeEEEecCCCCcEEEeeCCc
Q 021925          192 KTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTYV-----TERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       192 ~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      +--.+++|.|.|++||+...   ...|.+|. ++|.....|.     ....|..++|++++..|++--.+.
T Consensus       257 gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~  326 (928)
T PF04762_consen  257 GLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR  326 (928)
T ss_pred             CccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC
Confidence            33456899999999998775   45688887 5566655555     345799999999999999987666

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.12  E-value=1e-06  Score=67.99  Aligned_cols=237  Identities=13%  Similarity=0.050  Sum_probs=150.4

Q ss_pred             EEEEEcC-CCCEEEEeeCCCc-eEEEEcCCCeeeEEecCCCcce--EEEEEcCCCcEEEEEeC-----CCcEEEEecC-C
Q 021925           14 TYLKYNK-DGDLLFSCAKDHT-PTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTLITGSA-----DQTAKLWNVE-T   83 (305)
Q Consensus        14 ~~~~~~~-~~~~l~s~~~dg~-v~iw~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~s~~~-----dg~v~vwd~~-~   83 (305)
                      ..++.+| .+..++.+-.-|+ ..+||..+++....+....+.-  -.-.|++||++|++.-.     .|.|-|||.. +
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            4678889 5566667766664 6789999999888776544332  24679999999988633     5889999998 5


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeee----EEEEEeec---ccCCCCCceEEE--E--eccCCCeeE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSA----IHVKRIAR---DPADQGGESVLI--L--KGPQGRINR  151 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~--~--~~~~~~i~~  151 (305)
                      -+.+.++. +.-....+.+.|++..++++..+...-...    +++..+..   ......++.+..  +  ..|+.+|..
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence            56666666 555677889999998888876543222111    11100000   000123444443  3  347788999


Q ss_pred             EEEcCCCCEEEEeeCCC-------cEEEEeCCCCcEeeeeccc----cCCccceEEEEEcCCCCEEEEEe-CCCeEEEEE
Q 021925          152 AVWGPLNRTIISAGEDA-------IVRIWDTETGKLLKESDKE----TGHKKTITSLAKAADGSHFLTGS-LDKSAKLWD  219 (305)
Q Consensus       152 ~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd  219 (305)
                      +++.++|..++..-..|       -|.+++..  +.+..+...    ..-...+-++++++++..+++.+ .-+.+.+||
T Consensus       168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d  245 (305)
T PF07433_consen  168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD  245 (305)
T ss_pred             EEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence            99999987555443333       24444432  323322211    13356789999999998775555 578899999


Q ss_pred             cCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          220 ARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       220 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ..+++.+....... +..++-.+++ +++ +++.+.
T Consensus       246 ~~tg~~~~~~~l~D-~cGva~~~~~-f~~-ssG~G~  278 (305)
T PF07433_consen  246 AATGRLLGSVPLPD-ACGVAPTDDG-FLV-SSGQGQ  278 (305)
T ss_pred             CCCCCEeeccccCc-eeeeeecCCc-eEE-eCCCcc
Confidence            99999988765332 5667777776 444 444444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.12  E-value=1.7e-07  Score=86.10  Aligned_cols=208  Identities=13%  Similarity=0.126  Sum_probs=130.6

Q ss_pred             ceEEEEEcCCCCEEEEee-CCCceEEEEcCCCeeeEEecCC-----------------CcceEEEEEcC-CCcEEEEEeC
Q 021925           12 PLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGH-----------------NGAVWCCDVSR-DSMTLITGSA   72 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~-----------------~~~v~~i~~~~-~~~~l~s~~~   72 (305)
                      ....++++++++.|+.+. .++.|+++|..++. +.++.+-                 -....+++++| ++..+++.+.
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            357889999888666554 45789999987654 3333210                 01236899999 5666677777


Q ss_pred             CCcEEEEecCCCCeeEEEe----------------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC----
Q 021925           73 DQTAKLWNVETGAQLFTFN----------------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA----  132 (305)
Q Consensus        73 dg~v~vwd~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  132 (305)
                      ++.|++||..++... .+.                .-.....++++|++..++++...    ...+..+++.....    
T Consensus       704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~----n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE----SSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC----CCeEEEEECCCCcEEEEE
Confidence            899999998776432 111                01245678999998866555432    22333333221100    


Q ss_pred             ---CCCCceEEEEe--------ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc----------cCCc
Q 021925          133 ---DQGGESVLILK--------GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE----------TGHK  191 (305)
Q Consensus       133 ---~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~  191 (305)
                         .........+.        ........++++++|+.+++-+.++.|++||..++.........          .+.-
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l  858 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL  858 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence               00000000000        01123468899999998888888999999999877654322110          0122


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE
Q 021925          192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (305)
Q Consensus       192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  225 (305)
                      .....++++++|+.+++-+.+++|++||+++++.
T Consensus       859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            3577899999999888888999999999998765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.7e-09  Score=85.22  Aligned_cols=241  Identities=17%  Similarity=0.172  Sum_probs=165.2

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCC---CeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CCcEEEEecCCC
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETG   84 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~vwd~~~~   84 (305)
                      |.+.|+.+..+ -.+++.+++.||.++.|.-..   -+.+..+..|.+.|.+++.+-++.++.|.+. |..++++|+++-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            77888887655 456999999999999996432   2445666789999999999999999999887 999999999987


Q ss_pred             CeeEEEeeCCCceEEEEec--CCc--eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           85 AQLFTFNFDSPARSVDFAV--GDK--LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      ..+.-++.......+.|..  +..  .+++....    .+.+.+.+-.    ....+....-+-|..+|.++.+.|.+..
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~----sg~i~VvD~~----~d~~q~~~fkklH~sPV~~i~y~qa~Ds  158 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFK----SGKIFVVDGF----GDFCQDGYFKKLHFSPVKKIRYNQAGDS  158 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeeccc----CCCcEEECCc----CCcCccceecccccCceEEEEeeccccc
Confidence            7766555444333333332  211  22222110    1111111111    1112344455678999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCC------CcEeeeec------cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE
Q 021925          161 IISAGEDAIVRIWDTET------GKLLKESD------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~------~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  228 (305)
                      +++....|.|.-|....      .+....+.      .........+++.|+|++..+.+-+.|..|++++.++++.++.
T Consensus       159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence            99999999999999873      11111111      1112345678999999999999999999999999998876554


Q ss_pred             Eee---------------------------------C-CCeeEEEecCCCCcEEEeeCCcEEEE
Q 021925          229 YVT---------------------------------E-RPVNAVTMSPLLDHVCIGEPQTIKFM  258 (305)
Q Consensus       229 ~~~---------------------------------~-~~v~~~~~~~~~~~l~~~~~~~~~~~  258 (305)
                      +..                                 + ..-..+.|...|++|+-|+--|..++
T Consensus       239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvi  302 (558)
T KOG0882|consen  239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVI  302 (558)
T ss_pred             hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEE
Confidence            430                                 0 11356678999999998887776543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.11  E-value=4e-09  Score=77.42  Aligned_cols=201  Identities=14%  Similarity=0.143  Sum_probs=112.3

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCe------------eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~------------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      |+.+.++.+- .|+++..++.+......++.            +.+.+..|.++-.+-+.+--++.+++++.||.+.+.+
T Consensus        39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            5566665443 56666666555544333222            2223333333322222233456789999999999999


Q ss_pred             cCCCCeeE-EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           81 VETGAQLF-TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        81 ~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      .+.-..+. .+. ....-.+.++...+..+....-+.....+....+.+...      +....-......+++++-+|..
T Consensus       118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~------~t~~~~~~~~~~v~~l~~hp~q  191 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI------KTLIPSKKALDAVTALCSHPAQ  191 (319)
T ss_pred             chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccc------ccccccccccccchhhhCCccc
Confidence            76521111 111 001111122223333333332222222223333333211      1111111222348899999976


Q ss_pred             C-EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCC
Q 021925          159 R-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       159 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      + .+++|+.||.+-+||.++......+.  ..|+.+++.+-|+| ++..|+++++||.+..||..+
T Consensus       192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l--~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  192 QHLVCCGTDDGIVGLWDARNVAMPVSLL--KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccEEEEecCCCeEEEEEcccccchHHHH--HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            5 56678889999999999875443332  37999999999999 667899999999999999774

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.10  E-value=3.6e-10  Score=59.97  Aligned_cols=39  Identities=33%  Similarity=0.618  Sum_probs=36.8

Q ss_pred             CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus        42 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      ++++.++++|.+.|.+++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.10  E-value=7.5e-08  Score=74.13  Aligned_cols=189  Identities=19%  Similarity=0.209  Sum_probs=126.4

Q ss_pred             EEEcCCCCEEEEee-----CCCceEEEEcC-CCeeeEEecCCCcceEEEEEcCCCcEEEEEe------------------
Q 021925           16 LKYNKDGDLLFSCA-----KDHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITGS------------------   71 (305)
Q Consensus        16 ~~~~~~~~~l~s~~-----~dg~v~iw~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~------------------   71 (305)
                      -.||+||++|++.-     ..|.|-|||.. +.+.+.++..|.-.-..+.+.|||+.|+++.                  
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            36999999999863     35899999998 6678888888877778899999998887763                  


Q ss_pred             CCCcEEEEecCCCCeeEEEe-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE----
Q 021925           72 ADQTAKLWNVETGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL----  142 (305)
Q Consensus        72 ~dg~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  142 (305)
                      ++-++...|..+|+.+....     +...++.+++.+++..++..-.........--+.....      ......+    
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~------g~~~~~~~~p~  209 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR------GGALRLLPAPE  209 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC------CCcceeccCCh
Confidence            22446667778888877755     34578999999998887765322111111111111110      1111111    


Q ss_pred             ---eccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925          143 ---KGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (305)
Q Consensus       143 ---~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  217 (305)
                         ..-.+.+-+|++++++..+++.+ ..+.+.+||..+++.+....     -..+..++-.+++ ++++.+ .|.+..
T Consensus       210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-----l~D~cGva~~~~~-f~~ssG-~G~~~~  281 (305)
T PF07433_consen  210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-----LPDACGVAPTDDG-FLVSSG-QGQLIR  281 (305)
T ss_pred             HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-----cCceeeeeecCCc-eEEeCC-CccEEE
Confidence               23346788999999998876555 57899999999999887764     3345566666666 555544 454333

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.10  E-value=8.1e-10  Score=84.17  Aligned_cols=164  Identities=10%  Similarity=0.156  Sum_probs=115.4

Q ss_pred             EEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCC
Q 021925           26 FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGD  105 (305)
Q Consensus        26 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~  105 (305)
                      ++.+.+-.|-+-|+++|-. +.+. .++.|.++.|...++++..|..+|.|...|++....-                  
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG------------------  287 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG------------------  287 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC------------------
Confidence            4445566777778777643 3343 5677888999887889999999999999998855110                  


Q ss_pred             ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcE---e
Q 021925          106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKL---L  181 (305)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~---~  181 (305)
                                                   .+.+.+ .--|.+.|+++..-. ++++|++.+.+|+|++||++.-++   +
T Consensus       288 -----------------------------~~~~a~-rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V  337 (425)
T KOG2695|consen  288 -----------------------------NGWCAQ-RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSV  337 (425)
T ss_pred             -----------------------------CCcceE-EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccce
Confidence                                         011111 123667777777665 678899999999999999997766   6


Q ss_pred             eeeccccCCccceE--EEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC-----CeeEEEecC
Q 021925          182 KESDKETGHKKTIT--SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-----PVNAVTMSP  242 (305)
Q Consensus       182 ~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~v~~~~~~~  242 (305)
                      .+++   +|...-.  -+...+....+++++.|...+||.++++..+.++....     .+.++++..
T Consensus       338 ~qYe---GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  338 MQYE---GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             eeee---cccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence            6665   5543322  23345667788999999999999999999999887332     345556543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=1.4e-10  Score=98.66  Aligned_cols=200  Identities=16%  Similarity=0.159  Sum_probs=141.9

Q ss_pred             Cce-EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC--cEEE
Q 021925            2 RPI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKL   78 (305)
Q Consensus         2 ~~~-~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~v~v   78 (305)
                      |+. .++.|...-+|++|+-+.++|+.|+-.|.|+++++.+|.......+|.++|+-+.=+.+|..+++.+.-.  -..+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            454 4788999999999999999999999999999999999999999999999999999998998777655432  4678


Q ss_pred             EecCC-CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           79 WNVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        79 wd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      |++.+ +...+++.                                                        .-.++.|+..
T Consensus      1172 W~~~s~~~~~Hsf~--------------------------------------------------------ed~~vkFsn~ 1195 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD--------------------------------------------------------EDKAVKFSNS 1195 (1516)
T ss_pred             hccccccCcccccc--------------------------------------------------------ccceeehhhh
Confidence            98753 22222221                                                        1223555554


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeec-cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCee
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN  236 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~  236 (305)
                      ...-+.|+......+||++++.++.++. ...+....-+...|+|+..+++   .||  -+||.+..+.++.|..-.---
T Consensus      1196 ~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~ 1270 (1516)
T KOG1832|consen 1196 LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG 1270 (1516)
T ss_pred             HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc
Confidence            4444455555678999999988877643 2223334457788999888766   466  579999887777776222223


Q ss_pred             EEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      .-.|+|.|.-++.-          ..+|++....++
T Consensus      1271 ~G~FHP~g~eVIIN----------SEIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1271 GGGFHPSGNEVIIN----------SEIWDMRTFKLL 1296 (1516)
T ss_pred             cccccCCCceEEee----------chhhhhHHHHHH
Confidence            34688988777664          456766655554

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=4.5e-10  Score=90.93  Aligned_cols=168  Identities=20%  Similarity=0.307  Sum_probs=122.3

Q ss_pred             eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEE
Q 021925           45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV  124 (305)
Q Consensus        45 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (305)
                      +..+.+|...|..++-..+.+-+++++.|++|++|.++...--.                                    
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~------------------------------------  771 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI------------------------------------  771 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc------------------------------------
Confidence            45567899999998887788899999999999999987431100                                    


Q ss_pred             EEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCc--cceEEEEEcCC
Q 021925          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAAD  202 (305)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~  202 (305)
                               ....+...+..|+.+|.++.|-.+.++++++  ||.|++||.--++++.+......|.  +.|.++. +-+
T Consensus       772 ---------~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~  839 (1034)
T KOG4190|consen  772 ---------GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVD  839 (1034)
T ss_pred             ---------ccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecc-cCc
Confidence                     1123455678899999999999888888765  6899999998888777654332222  2233332 224


Q ss_pred             CCEEEEE-eCCCeEEEEEcCCceEEEEEe------eCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925          203 GSHFLTG-SLDKSAKLWDARTLELIKTYV------TERPVNAVTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       203 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                      ...+..| +...+|+++|.+.++-..+++      ...-+.+++..|.|+.+++|-++|......
T Consensus       840 ~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LD  904 (1034)
T KOG4190|consen  840 RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILD  904 (1034)
T ss_pred             chheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEe
Confidence            4455444 678999999999988777776      123478999999999999998777754444

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=3.4e-08  Score=83.30  Aligned_cols=210  Identities=14%  Similarity=0.106  Sum_probs=140.0

Q ss_pred             EecccccceEEEEEcCCC------------CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC---CC-cEEE
Q 021925            5 LMKGHERPLTYLKYNKDG------------DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR---DS-MTLI   68 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~------------~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~l~   68 (305)
                      .+.-|...|+.+.|.|-.            -.||++.-.|.|.+||...+..+..++.|.+++..++|-+   +. ..|+
T Consensus        50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll  129 (1062)
T KOG1912|consen   50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL  129 (1062)
T ss_pred             ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence            356788999999998731            2567777789999999999999899999999999999977   33 3566


Q ss_pred             EEeCCCcEEEEecCCCCeeEEEeeCCCc-eEEEEecCC-ceE-EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925           69 TGSADQTAKLWNVETGAQLFTFNFDSPA-RSVDFAVGD-KLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (305)
Q Consensus        69 s~~~dg~v~vwd~~~~~~~~~~~~~~~v-~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (305)
                      .-....++.+|+..+|+...+......+ .|+.+.|-+ +.+ +.+..+.....     ..+........++..+.-..|
T Consensus       130 aIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~-----~~l~~sep~~pgk~~qI~sd~  204 (1062)
T KOG1912|consen  130 AIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC-----KDLGLSEPDVPGKEFQITSDH  204 (1062)
T ss_pred             EecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE-----eccCCCCCCCCceeEEEecCc
Confidence            6666789999999999999888744444 457777732 222 22222211111     111111112222222222222


Q ss_pred             CC-------------------------CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc
Q 021925          146 QG-------------------------RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA  200 (305)
Q Consensus       146 ~~-------------------------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  200 (305)
                      ..                         ....++|+|.-+.++.......+.++|++-..++.....   ..+.+.-+.+-
T Consensus       205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi---er~~akfv~vl  281 (1062)
T KOG1912|consen  205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI---ERGGAKFVDVL  281 (1062)
T ss_pred             cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe---ccCCcceeEec
Confidence            21                         012457788877666666778899999998888887763   33444455666


Q ss_pred             CCC--CEEEEEeCCCeEEEEEcCC
Q 021925          201 ADG--SHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       201 ~~~--~~l~~~~~dg~i~iwd~~~  222 (305)
                      |++  ..|++.-.||.+.+|--+.
T Consensus       282 P~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  282 PDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             cCCCcceEEEEecCCeEEEEEeec
Confidence            654  5699999999999997554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.9e-08  Score=84.93  Aligned_cols=186  Identities=16%  Similarity=0.202  Sum_probs=130.2

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      ..++|++++  ++.++-|+-+|.|++.+.+ +.. .+...|+..      ..+|.+++||+.||+|.|-.+-+.+...++
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            345566665  5789999999999999865 444 344445544      568999999999999999999999999999


Q ss_pred             eeCCCceEEEEecC-----CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           91 NFDSPARSVDFAVG-----DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        91 ~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      ....++.+++++|+     .+.+++++.....+...        .+.  ..+....+....++|.++.|.  |+++|-++
T Consensus       110 df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er--------~wl--gnk~~v~l~~~eG~I~~i~W~--g~lIAWan  177 (846)
T KOG2066|consen  110 DFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSER--------NWL--GNKDSVVLSEGEGPIHSIKWR--GNLIAWAN  177 (846)
T ss_pred             ecCCcceeEEeccchhhhhhhheeecCcceEEEehh--------hhh--cCccceeeecCccceEEEEec--CcEEEEec
Confidence            99999999999997     44555555432221111        000  011112466778999999997  78899888


Q ss_pred             CCCcEEEEeCCCCcEeeeeccccC---CccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          166 EDAIVRIWDTETGKLLKESDKETG---HKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      .+| |++||+.+++.+..++....   .......+.|.++. .|+.|= ..+|+|..++
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSIK  233 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEEe
Confidence            777 89999999988877764321   11223456777654 455554 4468888777

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=2.3e-08  Score=77.98  Aligned_cols=241  Identities=12%  Similarity=0.168  Sum_probs=140.7

Q ss_pred             EecccccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~   82 (305)
                      .+.+|...|.+++|||..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-|. ++|+.|-.+|.|.+||++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            4667889999999999776 7888999999999999999999888887 789999998755 577788889999999998


Q ss_pred             CCCeeE-EEe---eCCCceEEEEec------CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925           83 TGAQLF-TFN---FDSPARSVDFAV------GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (305)
Q Consensus        83 ~~~~~~-~~~---~~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (305)
                      ..+... .+.   ...++..++.-+      .+.+++....       ....|++....   ...+...-.+..+...++
T Consensus       267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-------~l~f~ei~~s~---~~~p~vlele~pG~cism  336 (463)
T KOG1645|consen  267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT-------VLQFYEIVFSA---ECLPCVLELEPPGICISM  336 (463)
T ss_pred             CCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh-------hhhhhhhhccc---cCCCcccccCCCcceeee
Confidence            654221 111   223344333333      3333333322       12222222111   111111112334555666


Q ss_pred             EEcCCCCEEEEeeCCC----cEE----EEeCCCCcEeeeecccc-CC-cc---ceEEEEEcCCCCEEE-EEeCCCeEEEE
Q 021925          153 VWGPLNRTIISAGEDA----IVR----IWDTETGKLLKESDKET-GH-KK---TITSLAKAADGSHFL-TGSLDKSAKLW  218 (305)
Q Consensus       153 ~~~~~~~~l~~~~~dg----~i~----iwd~~~~~~~~~~~~~~-~~-~~---~v~~~~~~~~~~~l~-~~~~dg~i~iw  218 (305)
                      +.++..+.++......    .++    --|-.+|.++...+... +. ..   .-..+.-.++.++++ ++...+.+.+|
T Consensus       337 qy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~  416 (463)
T KOG1645|consen  337 QYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ  416 (463)
T ss_pred             eecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence            6666555554433220    011    11222333332222100 00 00   001111133445544 55566889999


Q ss_pred             EcCCceEEEEEeeCCCeeEEEecCC--CCcEEEeeCCcEE
Q 021925          219 DARTLELIKTYVTERPVNAVTMSPL--LDHVCIGEPQTIK  256 (305)
Q Consensus       219 d~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~~  256 (305)
                      |..+++.++.+....+|.+++...-  +.+|++=.++...
T Consensus       417 D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~  456 (463)
T KOG1645|consen  417 DPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVH  456 (463)
T ss_pred             ccchhheeeecccCcceeecceeecCCcchhhheecceEE
Confidence            9999999999998899988876542  3466666666544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.04  E-value=8.7e-10  Score=58.46  Aligned_cols=34  Identities=29%  Similarity=0.578  Sum_probs=32.9

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEE
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWF   38 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~   38 (305)
                      .+++|.++|++++|+|++++|++|+.|+.|++||
T Consensus         6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.03  E-value=2.1e-06  Score=64.48  Aligned_cols=226  Identities=16%  Similarity=0.163  Sum_probs=119.5

Q ss_pred             EEEEcCCCCEEEEeeCCCceEEEEcCCC--eeeEEecCCC---cceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925           15 YLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHN---GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (305)
Q Consensus        15 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~--~~~~~~~~~~---~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~   89 (305)
                      .++.+++|+.||.. .|..|.|-..++.  ..+.+.+-.+   -.=+.++|+||+..||.+...|+|+++|+.. ..+..
T Consensus         2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~   79 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV   79 (282)
T ss_pred             ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence            35677899888865 5778888765542  2222222222   2347899999999999999999999999874 44444


Q ss_pred             Ee--------eCCCceEEEEecCC-------ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE--Ee-ccCCCeeE
Q 021925           90 FN--------FDSPARSVDFAVGD-------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI--LK-GPQGRINR  151 (305)
Q Consensus        90 ~~--------~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~i~~  151 (305)
                      +.        ....|..+.|.+..       .++++..      .+.++.+.+... ..+..+..+.  +. .+...|.+
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y------~G~L~Sy~vs~g-t~q~y~e~hsfsf~~~yp~Gi~~  152 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY------RGQLRSYLVSVG-TNQGYQENHSFSFSSHYPHGINS  152 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEec------cceeeeEEEEcc-cCCcceeeEEEEecccCCCceeE
Confidence            43        22344555555432       2233222      122222222111 0111222222  22 24678999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCE--EEEEeCCC------eEEEEEcCCc
Q 021925          152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH--FLTGSLDK------SAKLWDARTL  223 (305)
Q Consensus       152 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg------~i~iwd~~~~  223 (305)
                      +.++|..+.|+.|+....      +.+..    .   +....+++-..-.+..+  .++...|+      +-.+|.+-+.
T Consensus       153 ~vy~p~h~LLlVgG~~~~------~~~~s----~---a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~  219 (282)
T PF15492_consen  153 AVYHPKHRLLLVGGCEQN------QDGMS----K---ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF  219 (282)
T ss_pred             EEEcCCCCEEEEeccCCC------CCccc----c---ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce
Confidence            999999888877664322      00000    0   11112222111111111  11222221      1233333332


Q ss_pred             eEEEE-EeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          224 ELIKT-YVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       224 ~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      +.... ......|..|..||||..||+..-.|.     +.+|.+.
T Consensus       220 ~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~-----lsLW~iP  259 (282)
T PF15492_consen  220 KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS-----LSLWEIP  259 (282)
T ss_pred             eeeeccccCCCceEEEEECCCCCEEEEEEcCCe-----EEEEecC
Confidence            22111 125677999999999999999998887     5555543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.03  E-value=7.3e-07  Score=73.61  Aligned_cols=211  Identities=15%  Similarity=0.146  Sum_probs=119.5

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceE-----EEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCc
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-----CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA   96 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~-----~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v   96 (305)
                      +..++.++.+|.++.+|.++|+.+.++........     +.... + ..++.+..+|.+..+|.++++.+.......+.
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            34566667788888888888887766653222111     11111 2 36777888899999999999887665422110


Q ss_pred             ------------eEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           97 ------------RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        97 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                                  ....+ .++..++...++      .+...+..      .++.......  .......  ..+..++.+
T Consensus       223 g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g------~l~a~d~~------tG~~~W~~~~--~~~~~p~--~~~~~vyv~  285 (377)
T TIGR03300       223 GRTELERLVDVDGDPVV-DGGQVYAVSYQG------RVAALDLR------SGRVLWKRDA--SSYQGPA--VDDNRLYVT  285 (377)
T ss_pred             CCCchhhhhccCCccEE-ECCEEEEEEcCC------EEEEEECC------CCcEEEeecc--CCccCce--EeCCEEEEE
Confidence                        01111 133333332221      12222221      1222221111  1111111  246678888


Q ss_pred             eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC-CeeEEEecCC
Q 021925          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMSPL  243 (305)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~  243 (305)
                      +.||.+..+|..+++.+.......  .....+...  .+..+++++.+|.++++|..+++.+.++.... .+..--...+
T Consensus       286 ~~~G~l~~~d~~tG~~~W~~~~~~--~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~  361 (377)
T TIGR03300       286 DADGVVVALDRRSGSELWKNDELK--YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG  361 (377)
T ss_pred             CCCCeEEEEECCCCcEEEcccccc--CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC
Confidence            899999999999998876653211  111222222  35688999999999999999999998887333 3332222223


Q ss_pred             CCcEEEeeCCcEE
Q 021925          244 LDHVCIGEPQTIK  256 (305)
Q Consensus       244 ~~~l~~~~~~~~~  256 (305)
                      + .|++++.++..
T Consensus       362 ~-~l~v~~~dG~l  373 (377)
T TIGR03300       362 D-GLLVQTRDGDL  373 (377)
T ss_pred             C-EEEEEeCCceE
Confidence            3 47777777753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=5.5e-09  Score=82.47  Aligned_cols=218  Identities=16%  Similarity=0.114  Sum_probs=145.4

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeC-CCceEEEEcCCCeeeEEecC--CCcceEEEEEcCC-Cc-EEE-EEeCCCcEEEE
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRG--HNGAVWCCDVSRD-SM-TLI-TGSADQTAKLW   79 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~--~~~~v~~i~~~~~-~~-~l~-s~~~dg~v~vw   79 (305)
                      +..|...|.+++.+-+|..+.|.+. |..++++|+++-..+..++-  -.+.+..+ -++. .. .++ +.-.+|.+.++
T Consensus        49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~Vv  127 (558)
T KOG0882|consen   49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVV  127 (558)
T ss_pred             hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEE
Confidence            4578888899999999999999777 99999999987655433331  22222211 2221 11 333 33458999999


Q ss_pred             ecCCCCeeE-EEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeec------c---cCCCCCceEEEEeccCC
Q 021925           80 NVETGAQLF-TFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR------D---PADQGGESVLILKGPQG  147 (305)
Q Consensus        80 d~~~~~~~~-~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~  147 (305)
                      |-....+.. -+.  +-.+|.++.+.+.+..++.....     +-+..|....      .   ...........+...+.
T Consensus       128 D~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~-----gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt  202 (558)
T KOG0882|consen  128 DGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS-----GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT  202 (558)
T ss_pred             CCcCCcCccceecccccCceEEEEeeccccceeecccc-----ceeEeecCCCcccCccccccccccccchhhccccccc
Confidence            976554222 222  78899999999988777765532     2233333321      0   01111122233344567


Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc-----------------------------cCC-ccceEEE
Q 021925          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-----------------------------TGH-KKTITSL  197 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------------~~~-~~~v~~~  197 (305)
                      ...++.++|++..+.+-+.|..|++++.++++.++.+.+.                             ..| ...-+.+
T Consensus       203 ~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~  282 (558)
T KOG0882|consen  203 EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNA  282 (558)
T ss_pred             CccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccccee
Confidence            7889999999999999999999999999999877665431                             011 2234567


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      .|...|++|+-|+.=| |++.++.+++..+.+.
T Consensus       283 ~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  283 VFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             EEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence            8888999999988777 9999999988877765

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.98  E-value=1.3e-08  Score=79.14  Aligned_cols=161  Identities=14%  Similarity=0.170  Sum_probs=108.2

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCee----eEEecCCCcceEEEEEcCCCcEEEE---EeCCCcEEEEecCCCC
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGER----LGTYRGHNGAVWCCDVSRDSMTLIT---GSADQTAKLWNVETGA   85 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~s---~~~dg~v~vwd~~~~~   85 (305)
                      +..+..+++++++|.+..+....+++......    +.... -...-+.+.|..+......   ++....+.+|...++.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            34456788999999998888877777654332    22222 2223344555444433333   4455667777776677


Q ss_pred             eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      +...+.+-+.+..++++||++.++++..     +..+++......     ...-...-||+.-|..++.-++. .|++++
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDR-----DEkIRvs~ypa~-----f~IesfclGH~eFVS~isl~~~~-~LlS~s  212 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADR-----DEKIRVSRYPAT-----FVIESFCLGHKEFVSTISLTDNY-LLLSGS  212 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecC-----CceEEEEecCcc-----cchhhhccccHhheeeeeeccCc-eeeecC
Confidence            7777778999999999999999988865     333333332211     11112235789999999987654 489999


Q ss_pred             CCCcEEEEeCCCCcEeeeec
Q 021925          166 EDAIVRIWDTETGKLLKESD  185 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~  185 (305)
                      .|++|++||+++++.+.++.
T Consensus       213 GD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  213 GDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCCcEEEEecccCCcccccc
Confidence            99999999999999886654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.96  E-value=4.2e-06  Score=64.73  Aligned_cols=186  Identities=15%  Similarity=0.097  Sum_probs=114.3

Q ss_pred             eEEEEEc-CCCCEEEEeeCCCceEEEEcCCCeeeEEecC-----CCcceEEEEEcCCCcEEEEEeCC--------CcEEE
Q 021925           13 LTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERLGTYRG-----HNGAVWCCDVSRDSMTLITGSAD--------QTAKL   78 (305)
Q Consensus        13 v~~~~~~-~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~s~~~d--------g~v~v   78 (305)
                      ...+++. +++.+++ +... .+.++|..+++.......     .....+++++.|+|++.++....        |.|..
T Consensus        42 ~~G~~~~~~~g~l~v-~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYV-ADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEEE-EETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEEE-EEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            5667777 6655444 4544 456669888865433332     34578999999999977765543        45777


Q ss_pred             EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC-CCCCceEEEEeccCCCeeEEEEcCC
Q 021925           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA-DQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      ++.. ++.......-.....++|+|+++.++++...    ...+...++..... ....+....+....+....+++..+
T Consensus       120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~  194 (246)
T PF08450_consen  120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD  194 (246)
T ss_dssp             EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT
T ss_pred             ECCC-CeEEEEecCcccccceEECCcchheeecccc----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC
Confidence            7776 5555555566677899999999887765432    12222223321111 0000111122222234778999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc-CCCCEEEEE
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA-ADGSHFLTG  209 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~  209 (305)
                      |+..++....+.|.++|.+ ++.+..+..   ....+++++|. ++.+.|+..
T Consensus       195 G~l~va~~~~~~I~~~~p~-G~~~~~i~~---p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  195 GNLWVADWGGGRIVVFDPD-GKLLREIEL---PVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             S-EEEEEETTTEEEEEETT-SCEEEEEE----SSSSEEEEEEESTTSSEEEEE
T ss_pred             CCEEEEEcCCCEEEEECCC-ccEEEEEcC---CCCCEEEEEEECCCCCEEEEE
Confidence            9988887788999999987 888888863   23588999994 565655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=3.8e-09  Score=80.62  Aligned_cols=141  Identities=18%  Similarity=0.203  Sum_probs=102.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC-----eeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-----ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~-----~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ++.|.++.|...++++..|+.+|.|...|++.+     .+...+. |.+.|+++.... ++++|++.+.+|+|++||.+.
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            456788889888999999999999999999864     3445555 899999999887 788999999999999999985


Q ss_pred             CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE--EEEcCCCCEE
Q 021925           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR--AVWGPLNRTI  161 (305)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l  161 (305)
                      -++..                                                 .+..+.+|-..-.-  +...+....+
T Consensus       331 ~K~~~-------------------------------------------------~V~qYeGHvN~~a~l~~~v~~eeg~I  361 (425)
T KOG2695|consen  331 TKCKK-------------------------------------------------SVMQYEGHVNLSAYLPAHVKEEEGSI  361 (425)
T ss_pred             hhccc-------------------------------------------------ceeeeecccccccccccccccccceE
Confidence            55411                                                 12233344322211  2345566788


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCC-ccceEEEEEc
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGH-KKTITSLAKA  200 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~  200 (305)
                      ++++.|...+||.++.+..+.+++..... +..+.+++|.
T Consensus       362 ~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  362 FSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             EEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            99999999999999999998888632221 2234455554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=7.1e-07  Score=76.42  Aligned_cols=203  Identities=10%  Similarity=0.048  Sum_probs=134.2

Q ss_pred             EEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcc-eEEEEEcCCCcEEEEEeCCCc-----EEEEecCCC------
Q 021925           17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-VWCCDVSRDSMTLITGSADQT-----AKLWNVETG------   84 (305)
Q Consensus        17 ~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~s~~~dg~-----v~vwd~~~~------   84 (305)
                      +|++.+..++.|+.+|.|.+.+ .+.+.+..++++... |..+....+.++|++.+.|+.     |++|+++.-      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            4678888999999999999887 345555778887777 555555555578888887654     999998633      


Q ss_pred             Cee---EEEe-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           85 AQL---FTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        85 ~~~---~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      +++   ..+.     .+.++.+++++.+-+.++++-.++........+       ....+...........+|+.+++..
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi-------~RDrgsr~~~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI-------LRDRGSRQDYSHRGKEPITGLALRS  181 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc-------hhccccceeeeccCCCCceeeEEec
Confidence            233   1111     256788899999988888876543332222111       1112223344445678999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      +++.++.......|.+|.+....+...  ....|...++|-++++....+++++. ..+.+||.....+-..+.
T Consensus       182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~--~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  182 DGKSVLFVATTEQVMLYSLSGRTPSLK--VLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             CCceeEEEEecceeEEEEecCCCccee--eeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence            987744344446799999984442222  22367888999999886654666654 459999988666555554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.93  E-value=4e-06  Score=64.51  Aligned_cols=208  Identities=17%  Similarity=0.119  Sum_probs=123.8

Q ss_pred             CCceEEEEcCCCeeeEEecCC--CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceE
Q 021925           31 DHTPTVWFADNGERLGTYRGH--NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (305)
Q Consensus        31 dg~v~iw~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  108 (305)
                      +|.|..||..+|+.+.+..--  .....+. ..+++..+++++.++.|..||..+|+.+.....+..+.......++.++
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~   80 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY   80 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence            688999999999988877531  1122211 2234567777889999999999999999999876665554455556655


Q ss_pred             EEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccC---CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeee
Q 021925          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQ---GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES  184 (305)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  184 (305)
                      +...++.      +...+.      ..++..... ....   ...........++.++.+..++.|..+|+++|+.+...
T Consensus        81 v~~~~~~------l~~~d~------~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen   81 VGTSDGS------LYALDA------KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY  148 (238)
T ss_dssp             EEETTSE------EEEEET------TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred             cccceee------eEeccc------CCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe
Confidence            5554321      111111      122333321 1110   11112222223778888888999999999999998877


Q ss_pred             ccccCCc-cc------e-EEEEEcCCCCEEEEEeCCCe-EEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          185 DKETGHK-KT------I-TSLAKAADGSHFLTGSLDKS-AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       185 ~~~~~~~-~~------v-~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ....... ..      + ..+.+. ++ .++.++.++. +.+ |+.+++.+.+.. ...+.. ...+++..|++++.++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~  223 (238)
T PF13360_consen  149 PVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGR  223 (238)
T ss_dssp             ESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTE
T ss_pred             ecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCE
Confidence            6421111 11      1 223333 44 6777777775 555 999999765333 222222 24567778888776665


Q ss_pred             E
Q 021925          256 K  256 (305)
Q Consensus       256 ~  256 (305)
                      .
T Consensus       224 l  224 (238)
T PF13360_consen  224 L  224 (238)
T ss_dssp             E
T ss_pred             E
Confidence            3

...

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.93  E-value=4.9e-07  Score=80.15  Aligned_cols=193  Identities=17%  Similarity=0.152  Sum_probs=128.2

Q ss_pred             CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeeccc
Q 021925           52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP  131 (305)
Q Consensus        52 ~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (305)
                      .+.|.++.|..+++.++.+..+|.|.+-|.++......-.....|.+++|+|++..++..++....+...-....+....
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            46899999999999999999999999999988877777778999999999999999888776332222111110000000


Q ss_pred             C------------CCCCceEEEEec---------------------cCCCeeEEEEcCCCCEEEEee----CC-CcEEEE
Q 021925          132 A------------DQGGESVLILKG---------------------PQGRINRAVWGPLNRTIISAG----ED-AIVRIW  173 (305)
Q Consensus       132 ~------------~~~~~~~~~~~~---------------------~~~~i~~~~~~~~~~~l~~~~----~d-g~i~iw  173 (305)
                      .            ..-++....+.+                     -.+.=+++.|--||+++|+..    .+ ..|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence            0            000111111111                     112234699999999999733    23 789999


Q ss_pred             eCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe---CCCeEEEEEcCCceEEEEEe-----eCCCeeEEEecCCCC
Q 021925          174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLELIKTYV-----TERPVNAVTMSPLLD  245 (305)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~  245 (305)
                      |.. +..-..-.   .....-.+++|-|.|..+++-.   .|+.|.++. ++|.....+.     ...++..++|+.++.
T Consensus       228 drE-g~Lns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  228 DRE-GALNSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSD  302 (1265)
T ss_pred             ccc-chhhcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCCCC
Confidence            977 44333222   2334456799999999988754   466799998 4454444433     233489999999999


Q ss_pred             cEEE
Q 021925          246 HVCI  249 (305)
Q Consensus       246 ~l~~  249 (305)
                      .|++
T Consensus       303 iLAv  306 (1265)
T KOG1920|consen  303 ILAV  306 (1265)
T ss_pred             ceee
Confidence            9988

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.93  E-value=1.8e-06  Score=71.36  Aligned_cols=221  Identities=14%  Similarity=0.135  Sum_probs=125.0

Q ss_pred             CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEE
Q 021925           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD  100 (305)
Q Consensus        21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~  100 (305)
                      .+..+++++.+|.|.-+|..+|+.+.+..........+..  ++..++.++.+|.+..+|.++|+.+........+.+..
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p  141 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP  141 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence            3567888888999999999999988776643322222222  45678888899999999999999988877555443322


Q ss_pred             EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe-----eEEEEcCCCCEEEEeeCCCcEEEEeC
Q 021925          101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI-----NRAVWGPLNRTIISAGEDAIVRIWDT  175 (305)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~iwd~  175 (305)
                      ...++..++...++.      +...+..      .++.+-.........     .+....  +..++.+..+|.+..+|.
T Consensus       142 ~v~~~~v~v~~~~g~------l~a~d~~------tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~  207 (377)
T TIGR03300       142 LVANGLVVVRTNDGR------LTALDAA------TGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDL  207 (377)
T ss_pred             EEECCEEEEECCCCe------EEEEEcC------CCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEc
Confidence            223444444333221      2222211      111111111110000     011111  246778888899999999


Q ss_pred             CCCcEeeeeccccCC--c--cceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEE
Q 021925          176 ETGKLLKESDKETGH--K--KTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCI  249 (305)
Q Consensus       176 ~~~~~~~~~~~~~~~--~--~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  249 (305)
                      ++++.+.........  .  .....+.-+|  .+..+++++.+|.++.+|.++++.+....... .....  ..+..+++
T Consensus       208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv  284 (377)
T TIGR03300       208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYV  284 (377)
T ss_pred             cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEE
Confidence            999876554311000  0  0000111111  24578888889999999999998877665222 11122  24556666


Q ss_pred             eeCCcEEEEEE
Q 021925          250 GEPQTIKFMLL  260 (305)
Q Consensus       250 ~~~~~~~~~~~  260 (305)
                      ++.++....+.
T Consensus       285 ~~~~G~l~~~d  295 (377)
T TIGR03300       285 TDADGVVVALD  295 (377)
T ss_pred             ECCCCeEEEEE
Confidence            66666544433

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.92  E-value=3e-06  Score=75.38  Aligned_cols=226  Identities=12%  Similarity=0.085  Sum_probs=138.0

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC----CCC
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE----TGA   85 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~----~~~   85 (305)
                      .+.|.++.|..+++.++.+..+|.|.+-|.++... .....-...|.+++|+||++.++..+.++++.+-.-.    ..+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            35899999999999999999999999998776543 2233356789999999999999988888887775431    111


Q ss_pred             ee-------------------EEEe----------------------eCCCceEEEEecCCceEEEeCCcceeeeeeEEE
Q 021925           86 QL-------------------FTFN----------------------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHV  124 (305)
Q Consensus        86 ~~-------------------~~~~----------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (305)
                      .+                   ..+.                      ..+.-..+.|.-+|.++++..-....-...+.+
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence            11                   0111                      112234588888888888753211111134444


Q ss_pred             EEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee---CCCcEEEEeCCCCcEeeeeccccC-CccceEEEEEc
Q 021925          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLKESDKETG-HKKTITSLAKA  200 (305)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~  200 (305)
                      |+-..       ..-..-....+.-.+++|-|.|..+++-.   .|+.|.++..+ |-.-..+..... ....+..++|+
T Consensus       227 ~drEg-------~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  227 YDREG-------ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             ecccc-------hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeec
Confidence            44331       11111112233446799999999888754   46679999854 333222221112 23349999999


Q ss_pred             CCCCEEEE---EeCCCeEEEEEcCCceEE--EEEeeCCCeeEEEecCCCC
Q 021925          201 ADGSHFLT---GSLDKSAKLWDARTLELI--KTYVTERPVNAVTMSPLLD  245 (305)
Q Consensus       201 ~~~~~l~~---~~~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~  245 (305)
                      .++..|++   ......|++|-+.+..-.  +.+..+.... +.|+|...
T Consensus       299 s~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~~~  347 (1265)
T KOG1920|consen  299 SNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPVTE  347 (1265)
T ss_pred             CCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCCCc
Confidence            99999887   444455999988765322  2222222111 66777443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.89  E-value=7.8e-06  Score=66.91  Aligned_cols=236  Identities=12%  Similarity=0.087  Sum_probs=130.6

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee-------------------------------------------eEEe
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-------------------------------------------LGTY   48 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~-------------------------------------------~~~~   48 (305)
                      .|+.+.|+++...|++|...|.|.||....++.                                           ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            589999999988999999999999996542111                                           1112


Q ss_pred             cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC---------CceEEEEec-----CC---ceEEEe
Q 021925           49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS---------PARSVDFAV-----GD---KLAVIT  111 (305)
Q Consensus        49 ~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~---------~v~~~~~~~-----~~---~~~~~~  111 (305)
                      +...++|++++.+.=| +++.|..+|.+.|.|++....+..-....         .+.++.|..     ++   -.++++
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            3446899999998544 99999999999999999888777754222         466777763     22   345555


Q ss_pred             CCcceeeeeeEEEEEeecccC-CCCCceEEEEeccCCCeeEEE-EcCC-----------------C---CEEEEeeCCCc
Q 021925          112 TDPFMELNSAIHVKRIARDPA-DQGGESVLILKGPQGRINRAV-WGPL-----------------N---RTIISAGEDAI  169 (305)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~-~~~~-----------------~---~~l~~~~~dg~  169 (305)
                      ++.     +.+..+.+..... ....+.......+.++|..+. ++.+                 +   +-++....+..
T Consensus       162 Tn~-----G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~  236 (395)
T PF08596_consen  162 TNS-----GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD  236 (395)
T ss_dssp             ETT-----SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred             eCC-----CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence            542     2233333321110 001111122224445555444 2111                 1   12344444678


Q ss_pred             EEEEeCCCCcEeeeeccccCCccceEEEEE-----cCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC-----CeeEEE
Q 021925          170 VRIWDTETGKLLKESDKETGHKKTITSLAK-----AADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-----PVNAVT  239 (305)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~v~~~~  239 (305)
                      ++++...+.+...+..   ........+.+     ...+..|++-..+|.++++.+...+.+.......     .+...+
T Consensus       237 irv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss  313 (395)
T PF08596_consen  237 IRVFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS  313 (395)
T ss_dssp             EEEE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred             eEEEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence            9999998877766554   22223333344     2356678889999999999999999988877432     356778


Q ss_pred             ecCCCCcEEEeeCCcEE
Q 021925          240 MSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       240 ~~~~~~~l~~~~~~~~~  256 (305)
                      ++++|+.++..+.....
T Consensus       314 is~~Gdi~~~~gpsE~~  330 (395)
T PF08596_consen  314 ISRNGDIFYWTGPSEIQ  330 (395)
T ss_dssp             E-TTS-EEEE-SSSEEE
T ss_pred             ECCCCCEEEEeCcccEE
Confidence            89999988777666543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.87  E-value=4.9e-07  Score=74.44  Aligned_cols=74  Identities=20%  Similarity=0.248  Sum_probs=63.2

Q ss_pred             ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      .....+.+.+++|+.+.++.|+.||.|.+||...+.....     ...-.++.++|+|+|.++++|+..|.+.+||+.-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            5677899999999999999999999999999876633322     2456678999999999999999999999999763

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.86  E-value=1.7e-08  Score=84.56  Aligned_cols=209  Identities=15%  Similarity=0.233  Sum_probs=132.1

Q ss_pred             EecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCe-eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+.||...|+.+.|+|.. ..+++++.|..+..||+++.. ++.....-......++|+-....+...+..+.+.+||.+
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r  188 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR  188 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence            578999999999999954 588999999999999998754 444444444556889998744444445566789999998


Q ss_pred             CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC-CCEE
Q 021925           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTI  161 (305)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l  161 (305)
                      .+..                                                   +...+++|...++.+.|..- ...+
T Consensus       189 ~gs~---------------------------------------------------pl~s~K~~vs~vn~~~fnr~~~s~~  217 (1081)
T KOG0309|consen  189 KGST---------------------------------------------------PLCSLKGHVSSVNSIDFNRFKYSEI  217 (1081)
T ss_pred             CCCc---------------------------------------------------ceEEecccceeeehHHHhhhhhhhh
Confidence            6642                                                   22334455666666666543 2467


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCE--EEEEeCCCeEEE---------EEcCC-ceEEEEE
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH--FLTGSLDKSAKL---------WDART-LELIKTY  229 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~i---------wd~~~-~~~~~~~  229 (305)
                      .+++.||+|+.||............  ....+|..-.+-|-|.-  +.---.+..+-+         |+..+ .++++.|
T Consensus       218 ~s~~~d~tvkfw~y~kSt~e~~~~v--tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F  295 (1081)
T KOG0309|consen  218 MSSSNDGTVKFWDYSKSTTESKRTV--TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF  295 (1081)
T ss_pred             cccCCCCceeeecccccccccceec--cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence            8899999999999875432221111  24556666666664332  211111223333         33332 3677777


Q ss_pred             e-eCCCeeEEEecCCCC----------cEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925          230 V-TERPVNAVTMSPLLD----------HVCIGEPQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       230 ~-~~~~v~~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
                      . |...|....|-..+.          .|++=+.|-.     +++|.+..++.
T Consensus       296 ~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~-----lrlWpI~~~i~  343 (1081)
T KOG0309|consen  296 VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT-----LRLWPIDSQIQ  343 (1081)
T ss_pred             cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc-----eEeeeccHHHH
Confidence            7 666666665544332          3666676665     66776654443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=1e-06  Score=74.70  Aligned_cols=236  Identities=10%  Similarity=0.032  Sum_probs=149.6

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC------------cEEEEEeCCCcE
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS------------MTLITGSADQTA   76 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~------------~~l~s~~~dg~v   76 (305)
                      |...-.++.|+|.| ++|.|+ ...|.+-|..+.+.++.++.|...|+.+.|.|..            -.|+++...|.|
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             CcccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            44457789999988 777776 4488889999999999999999999999998721            256778889999


Q ss_pred             EEEecCCCCeeEEEe-eCCCceEEEEec---CC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925           77 KLWNVETGAQLFTFN-FDSPARSVDFAV---GD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (305)
                      .+||...+..+..++ +..++..++|-+   +. ..+++-..     ...+.+|+..      .++..-..........|
T Consensus        92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~-----ss~lvLwntd------tG~k~Wk~~ys~~iLs~  160 (1062)
T KOG1912|consen   92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG-----SSTLVLWNTD------TGEKFWKYDYSHEILSC  160 (1062)
T ss_pred             EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC-----CcEEEEEEcc------CCceeeccccCCcceee
Confidence            999999888777777 667888888876   23 22332222     1223333322      23333333444445566


Q ss_pred             EEEcCC-CCEEEEeeCCCcEEEEeCCCCc----EeeeeccccCCc----------------cc---------eEEEEEcC
Q 021925          152 AVWGPL-NRTIISAGEDAIVRIWDTETGK----LLKESDKETGHK----------------KT---------ITSLAKAA  201 (305)
Q Consensus       152 ~~~~~~-~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~----------------~~---------v~~~~~~~  201 (305)
                      +.+.|- .+.+...+..|.+.+-+.-..+    +.+.++....|.                ..         .-.++|+|
T Consensus       161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p  240 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP  240 (1062)
T ss_pred             eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence            777774 3556555566666665542110    111111000111                00         12346778


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCC--CcEEEeeCCcEEE
Q 021925          202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL--DHVCIGEPQTIKF  257 (305)
Q Consensus       202 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~~~~~~  257 (305)
                      .-+-++.......+.++|++-..++.... ....+.-+.+-|++  ..|++...+|..-
T Consensus       241 ~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~lt  299 (1062)
T KOG1912|consen  241 HWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLT  299 (1062)
T ss_pred             hhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEE
Confidence            66556666678889999999888888877 33334555665554  4577777777643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.79  E-value=5.5e-05  Score=62.78  Aligned_cols=114  Identities=13%  Similarity=0.049  Sum_probs=78.2

Q ss_pred             CeeEEEEcCCC-CEEEE----eeCCCc----EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925          148 RINRAVWGPLN-RTIIS----AGEDAI----VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW  218 (305)
Q Consensus       148 ~i~~~~~~~~~-~~l~~----~~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  218 (305)
                      ...++.|+-.. ..+.+    .+.+|.    -.+|+....+..+.-...-.....+.+++++|+...|+.|+.||+|.+|
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY  286 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence            34566676533 33333    233443    4567766544322211112477899999999999999999999999999


Q ss_pred             EcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925          219 DARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       219 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                      |...+..... +..-.++.++|+|+|..+++|++.|..-.+.+.
T Consensus       287 D~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  287 DTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             EcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            9877644332 466678999999999999999999984444333

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.79  E-value=1e-05  Score=67.03  Aligned_cols=215  Identities=11%  Similarity=0.075  Sum_probs=115.1

Q ss_pred             EEEcCCCCEEEEeeCC----------C-ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925           16 LKYNKDGDLLFSCAKD----------H-TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus        16 ~~~~~~~~~l~s~~~d----------g-~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      ++.+|.|-.+|....+          . .|.||+. .|+.+.++.-..+.+.++.|..+. .|+....||.++++|+. |
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G  110 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-G  110 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-C
Confidence            4555666666655433          1 4888874 467777665444899999998754 56677789999999986 3


Q ss_pred             CeeEEEeeCC-----CceEE-----EEecCCceEEEeCCcceeeeeeEEEE-EeecccCCCCCceEEEEeccCCCeeEEE
Q 021925           85 AQLFTFNFDS-----PARSV-----DFAVGDKLAVITTDPFMELNSAIHVK-RIARDPADQGGESVLILKGPQGRINRAV  153 (305)
Q Consensus        85 ~~~~~~~~~~-----~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (305)
                      +.  .+..+.     .+...     .+...|-.++..... .......... ......  ...........+........
T Consensus       111 ~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~-~~~v~n~~~~~~~~~~~--~~p~~~~~~~~~~~~~~i~~  185 (410)
T PF04841_consen  111 EF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNR-FYVVNNIDEPVKLRRLP--EIPGLWTKFHWWPSWTVIPL  185 (410)
T ss_pred             ce--eechhhhccccCcccccccccccCCCCEEEECCCCe-EEEEeCccccchhhccc--cCCCcccccccccccccceE
Confidence            33  222211     11111     222234333322221 1111111100 000000  00000000011111100123


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-
Q 021925          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-  232 (305)
Q Consensus       154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-  232 (305)
                      ++.+....+....++.+.+.+-...+.   +    ...+++..|+.||+|+++|.-..+|.+.+....-.+.+.++..+ 
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~  258 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFKQ---I----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS  258 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccccc---c----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc
Confidence            444455555555556666444332211   2    23468999999999999999999999999987766666666633 


Q ss_pred             -CCeeEEEecCCCC
Q 021925          233 -RPVNAVTMSPLLD  245 (305)
Q Consensus       233 -~~v~~~~~~~~~~  245 (305)
                       .....+.|.-+..
T Consensus       259 ~~~p~~~~WCG~da  272 (410)
T PF04841_consen  259 KSPPKQMAWCGNDA  272 (410)
T ss_pred             CCCCcEEEEECCCc
Confidence             5667788877653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.77  E-value=9.9e-08  Score=80.20  Aligned_cols=183  Identities=16%  Similarity=0.288  Sum_probs=128.0

Q ss_pred             eEEEEEcCCC--CEEEEeeCCCceEEEEcCC---CeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCCCCe
Q 021925           13 LTYLKYNKDG--DLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus        13 v~~~~~~~~~--~~l~s~~~dg~v~iw~~~~---~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      |-...|+|..  .+-++......-.+|++..   ......+.+|...|+++.|+|+. ..+++++.|-.+..||+++...
T Consensus        70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~  149 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR  149 (1081)
T ss_pred             hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence            7778888743  3444444455667887753   33445678899999999999954 5789999999999999986643


Q ss_pred             eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (305)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  166 (305)
                      ..                                                   .....-......++|+-....+.+.+.
T Consensus       150 p~---------------------------------------------------ys~~~w~s~asqVkwnyk~p~vlassh  178 (1081)
T KOG0309|consen  150 PF---------------------------------------------------YSTSSWRSAASQVKWNYKDPNVLASSH  178 (1081)
T ss_pred             ce---------------------------------------------------eeeecccccCceeeecccCcchhhhcc
Confidence            21                                                   111111233456778776666666777


Q ss_pred             CCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCce--EEEEEeeCCCeeEEEecC
Q 021925          167 DAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLE--LIKTYVTERPVNAVTMSP  242 (305)
Q Consensus       167 dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~  242 (305)
                      ...|++||++.+. ++..+.   +|...|+.++|.. -...+.+.+.||+|+.||.....  ..+......+|+.-.+-|
T Consensus       179 g~~i~vwd~r~gs~pl~s~K---~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P  255 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGSTPLCSLK---GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP  255 (1081)
T ss_pred             CCceEEEeccCCCcceEEec---ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence            7889999999764 555565   6888889888876 23458899999999999987543  334444677888888888


Q ss_pred             CCCcEEE
Q 021925          243 LLDHVCI  249 (305)
Q Consensus       243 ~~~~l~~  249 (305)
                      -|+-.++
T Consensus       256 fg~g~~~  262 (1081)
T KOG0309|consen  256 FGEGYCI  262 (1081)
T ss_pred             cCceeEe
Confidence            7765444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.77  E-value=1.1e-05  Score=62.15  Aligned_cols=187  Identities=20%  Similarity=0.161  Sum_probs=107.5

Q ss_pred             CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE-eeCCC----
Q 021925           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSP----   95 (305)
Q Consensus        21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~----   95 (305)
                      ++..+++++.++.+..||..+|+.+.+... .+.+...... ++..++.++.++.+..+|.++|+.+... ....+    
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            566777778999999999999998887774 2222221222 3446677778889999999999999985 42211    


Q ss_pred             ceEEEEecCCceEEEeC-CcceeeeeeEEEEEeecccCCCCCceEEEEeccCC----------CeeEEEEcCCCCEEEEe
Q 021925           96 ARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQG----------RINRAVWGPLNRTIISA  164 (305)
Q Consensus        96 v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~  164 (305)
                      .........+..++++. +..+...      +.      ..++.+........          .+..-....++ .++.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~------d~------~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~  179 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVAL------DP------KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVS  179 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEE------ET------TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEE
T ss_pred             ccccCceEecCEEEEEeccCcEEEE------ec------CCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEE
Confidence            11222222344444433 2222111      11      11222222222111          11122222234 67777


Q ss_pred             eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE
Q 021925          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (305)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  228 (305)
                      +.++.+.-+|+.+++.+....     ...+... ...++..|+.++.++.+..||+++++.+.+
T Consensus       180 ~~~g~~~~~d~~tg~~~w~~~-----~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  180 SGDGRVVAVDLATGEKLWSKP-----ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             CCTSSEEEEETTTTEEEEEEC-----SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             cCCCeEEEEECCCCCEEEEec-----CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            777764444999998664322     1122221 345677888888999999999999998754

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.76  E-value=3.4e-08  Score=72.66  Aligned_cols=73  Identities=21%  Similarity=0.318  Sum_probs=61.8

Q ss_pred             cceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCe-eeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925           11 RPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus        11 ~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ..|++++-+|.. ..+++|+.||.+-+||.++.. +...+..|+.++..+-|+| ++..|++++.||.+..||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            348999999954 567788899999999998764 3456678999999999999 778999999999999999764

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.75  E-value=3.7e-06  Score=71.12  Aligned_cols=217  Identities=13%  Similarity=0.025  Sum_probs=119.1

Q ss_pred             cCCCCEEEEe-eCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC----CcEEEEecCCCCeeEEEeeC
Q 021925           19 NKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVETGAQLFTFNFD   93 (305)
Q Consensus        19 ~~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~   93 (305)
                      +|||+.+... -..+.+.+.|.++.+...++.- .+....++++|+|+++++.+.+    .++..-+..+...+..+...
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            4455544322 2235666777777776666553 2344677899999988877642    22333332222222222111


Q ss_pred             CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CCcEEE
Q 021925           94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRI  172 (305)
Q Consensus        94 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i  172 (305)
                      .   .-++.++|+...+..+       .+.+.+....  ......+...-.-......+.++|||+++++++. +.++.+
T Consensus       280 ~---iea~vkdGK~~~V~gn-------~V~VID~~t~--~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSV  347 (635)
T PRK02888        280 R---IEEAVKAGKFKTIGGS-------KVPVVDGRKA--ANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTV  347 (635)
T ss_pred             H---HHHhhhCCCEEEECCC-------EEEEEECCcc--ccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEE
Confidence            0   0022334554444211       1222222110  0001122233334456778999999998887665 899999


Q ss_pred             EeCCCCcE------------eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC----------ceEEEEEe
Q 021925          173 WDTETGKL------------LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART----------LELIKTYV  230 (305)
Q Consensus       173 wd~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~  230 (305)
                      .|+.+.+.            ..+.+    -.......+|.++|+...+-..|..|..||+.+          ...+..+.
T Consensus       348 IDv~k~k~~~~~~~~~~~~vvaeve----vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~d  423 (635)
T PRK02888        348 IDVRKLDDLFDGKIKPRDAVVAEPE----LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLD  423 (635)
T ss_pred             EEChhhhhhhhccCCccceEEEeec----cCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceeccc
Confidence            99987553            33332    233445678999998888888999999999876          23334343


Q ss_pred             eCCCeeEEE------ecCCCCcEEEeeC
Q 021925          231 TERPVNAVT------MSPLLDHVCIGEP  252 (305)
Q Consensus       231 ~~~~v~~~~------~~~~~~~l~~~~~  252 (305)
                      ..-.+-.+.      -.|+|++|++...
T Consensus       424 V~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        424 VHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             CCCccceeeecCCCcCCCCCCEEEEccc
Confidence            222222222      3688888887643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.72  E-value=2.3e-06  Score=70.61  Aligned_cols=200  Identities=13%  Similarity=0.111  Sum_probs=130.5

Q ss_pred             CeeeEEecCCCcceEEEEEcCCCcEEEEEe---CC-CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCccee
Q 021925           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGS---AD-QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME  117 (305)
Q Consensus        42 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~---~d-g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  117 (305)
                      +.....+..-...+..-+|+|++..++-.+   .. ..+.++++.+++.......+..-...+|+|+++.++.+....  
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd--  259 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD--  259 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC--
Confidence            454555555566788889999998765432   22 359999999999888888888888999999999988887543  


Q ss_pred             eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeeccccCCccce
Q 021925          118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTI  194 (305)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~v  194 (305)
                        +...++......     +....+....+.-..-.|+|+|++++-.+. .|  .|.++|+..+.. ..+..   ....-
T Consensus       260 --g~~~iy~~dl~~-----~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~---~~~~~  328 (425)
T COG0823         260 --GSPDIYLMDLDG-----KNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF---SGGGN  328 (425)
T ss_pred             --CCccEEEEcCCC-----CcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec---cCCCC
Confidence              222222222111     112223333444446789999998886654 44  577777776554 33321   11222


Q ss_pred             EEEEEcCCCCEEEEEeC-CCe--EEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925          195 TSLAKAADGSHFLTGSL-DKS--AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       195 ~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      ..-.|+|||++|+..+. +|.  |.+.|+.++..+..+..........|.|+++.+...++..
T Consensus       329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence            26789999999887764 344  6677776665555555555566778999999887765544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.71  E-value=3.2e-05  Score=58.94  Aligned_cols=207  Identities=12%  Similarity=0.116  Sum_probs=111.7

Q ss_pred             eEecccccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEecCC-CcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925            4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      ..+.+-.+.+..++|+|+.+ ++++....+.|...+. +|+.++++.-. .+..-.|++..++.++++.-.++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            34667677799999999755 5555666778877785 57877776533 345788999888877776666888999988


Q ss_pred             CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      ..........                             ......+            .....+...+..++|+|.++.|
T Consensus        94 ~~~~~~~~~~-----------------------------~~~~~~l------------~~~~~~N~G~EGla~D~~~~~L  132 (248)
T PF06977_consen   94 DDDTTSLDRA-----------------------------DVQKISL------------GFPNKGNKGFEGLAYDPKTNRL  132 (248)
T ss_dssp             ----TT--EE-----------------------------EEEEEE---------------S---SS--EEEEEETTTTEE
T ss_pred             eccccccchh-----------------------------hceEEec------------ccccCCCcceEEEEEcCCCCEE
Confidence            5332111000                             0000000            0001234557788888888777


Q ss_pred             EEeeCCCcEEEEeCCC---CcEeeee-----ccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceEEEEEeeC
Q 021925          162 ISAGEDAIVRIWDTET---GKLLKES-----DKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTE  232 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~---~~~~~~~-----~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  232 (305)
                      +.+-+..-..++.++.   ...+...     .........+.+++++|. +++++.+.....+..+| .+|+++..+...
T Consensus       133 ~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~  211 (248)
T PF06977_consen  133 FVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLD  211 (248)
T ss_dssp             EEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-S
T ss_pred             EEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeC
Confidence            7777666666665543   1111111     001123345788999985 56677777888999999 678887777622


Q ss_pred             ----------CCeeEEEecCCCCcEEEeeCCc
Q 021925          233 ----------RPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       233 ----------~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                                ...-.++|.++|++.+++ ..+
T Consensus       212 ~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpN  242 (248)
T PF06977_consen  212 RGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPN  242 (248)
T ss_dssp             TTGGG-SS---SEEEEEE-TT--EEEEE-TTT
T ss_pred             CcccCcccccCCccEEEECCCCCEEEEc-CCc
Confidence                      246789999999766654 444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.70  E-value=2.7e-07  Score=79.42  Aligned_cols=146  Identities=17%  Similarity=0.186  Sum_probs=105.9

Q ss_pred             CCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC---------CCcEEEEecCCCCeeEEE
Q 021925           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---------DQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        20 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~   90 (305)
                      .+++.+.+|...|+|.+-|..+.+.++++.+|++.|.++..  .|+.|+++|.         |.-|+|||++..+.+.-+
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI  262 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI  262 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence            36789999999999999999999999999999999988776  5779999875         456899999988887777


Q ss_pred             eeCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC
Q 021925           91 NFDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (305)
Q Consensus        91 ~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  168 (305)
                      ..+....-+.|.|.  ...+++...+..      ...+.....  .....+..+......+..++++++++.++.|..+|
T Consensus       263 ~~~~~P~flrf~Psl~t~~~V~S~sGq~------q~vd~~~ls--NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g  334 (1118)
T KOG1275|consen  263 QFPYGPQFLRFHPSLTTRLAVTSQSGQF------QFVDTATLS--NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEG  334 (1118)
T ss_pred             ccccCchhhhhcccccceEEEEecccce------eeccccccC--CCccceeEEccCCCcceeEEecCCCceEEEecccC
Confidence            76655566677774  333333332211      111111110  11122334444555699999999999999999999


Q ss_pred             cEEEEeC
Q 021925          169 IVRIWDT  175 (305)
Q Consensus       169 ~i~iwd~  175 (305)
                      .|.+|--
T Consensus       335 ~v~~wa~  341 (1118)
T KOG1275|consen  335 HVNLWAD  341 (1118)
T ss_pred             cEeeecC
Confidence            9999973

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.70  E-value=1.1e-06  Score=75.91  Aligned_cols=174  Identities=14%  Similarity=0.094  Sum_probs=111.3

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEe
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA  102 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~  102 (305)
                      ..++.|+-...+..+|+.+.+..+...-..+.|.-++-  +++.+.+|...|+|.+-|.++.+.+++             
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht-------------  212 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHT-------------  212 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeee-------------
Confidence            34555555555666666666655554433334444443  455666777777777777666555444             


Q ss_pred             cCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee---------CCCcEEEE
Q 021925          103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG---------EDAIVRIW  173 (305)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---------~dg~i~iw  173 (305)
                                                             +..|.+.|.++..  .|+.|++++         .|.-|++|
T Consensus       213 ---------------------------------------~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVY  251 (1118)
T KOG1275|consen  213 ---------------------------------------FDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVY  251 (1118)
T ss_pred             ---------------------------------------eeccccceeeeec--cCCeEEEeecccccccccccchhhhh
Confidence                                                   4556666654443  366677665         35668999


Q ss_pred             eCCCCcEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCC-ceE---EEEEe-eCCCeeEEEecCCCCcE
Q 021925          174 DTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDART-LEL---IKTYV-TERPVNAVTMSPLLDHV  247 (305)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-~~~---~~~~~-~~~~v~~~~~~~~~~~l  247 (305)
                      |++..+.+..+..   +. ...-+.|.|. ...+++++..|...+-|..+ ..+   +..+. .++.+..++++++++.|
T Consensus       252 DLRmmral~PI~~---~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~al  327 (1118)
T KOG1275|consen  252 DLRMMRALSPIQF---PY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDAL  327 (1118)
T ss_pred             hhhhhhccCCccc---cc-CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceE
Confidence            9999887776652   22 2244667774 34688888999999999432 222   22222 45569999999999999


Q ss_pred             EEeeCCcEE
Q 021925          248 CIGEPQTIK  256 (305)
Q Consensus       248 ~~~~~~~~~  256 (305)
                      +.|..++..
T Consensus       328 afgd~~g~v  336 (1118)
T KOG1275|consen  328 AFGDHEGHV  336 (1118)
T ss_pred             EEecccCcE
Confidence            999988883

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.69  E-value=7.9e-06  Score=60.87  Aligned_cols=191  Identities=8%  Similarity=-0.032  Sum_probs=124.2

Q ss_pred             EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC-eeEEEe---eCCCceEE
Q 021925           24 LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA-QLFTFN---FDSPARSV   99 (305)
Q Consensus        24 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~---~~~~v~~~   99 (305)
                      .+..++.|.++++.+++.+..........-.+.++.+++|++++++.+....|..|.+.... .+..+.   ....-.+.
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~  209 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN  209 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence            35556778888888776544333332222348899999999999999999999999886442 222222   45566788


Q ss_pred             EEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC--CEEEEeeCCCcEEEEeCCC
Q 021925          100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--RTIISAGEDAIVRIWDTET  177 (305)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~iwd~~~  177 (305)
                      .|+.....++++..     ++...+|+++........+.. .-..|.+.+..+.|+|.|  .+|+..-.-+.+.+.|+++
T Consensus       210 S~s~~~~~FAv~~Q-----dg~~~I~DVR~~~tpm~~~ss-trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  210 SFSENDLQFAVVFQ-----DGTCAIYDVRNMATPMAEISS-TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             eeccCcceEEEEec-----CCcEEEEEecccccchhhhcc-cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            89999988888876     566677777654433222222 223489999999999977  3455555568899999999


Q ss_pred             CcEeeeecccc----CCc-cceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          178 GKLLKESDKET----GHK-KTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       178 ~~~~~~~~~~~----~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      ++..+.+....    .|. ..+..-.|+.++..+.+.+++. +.=|++.
T Consensus       284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~  331 (344)
T KOG4532|consen  284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNIL  331 (344)
T ss_pred             CceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecc
Confidence            87665554221    222 2366667777666665555442 4445443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.64  E-value=1.2e-05  Score=66.50  Aligned_cols=192  Identities=17%  Similarity=0.083  Sum_probs=117.1

Q ss_pred             ecccccceEEEEEcCCCCEEEEee---CC-CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEE-eCCCc--EEE
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCA---KD-HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQT--AKL   78 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~---~d-g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~--v~v   78 (305)
                      +..-...+..-+|+|+++.++..+   .. ..+.++++.+++....+. ..+.-...+|+|||+.|+.+ ..||.  |.+
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            333445567778999998766542   22 468899999887655554 34444567899999877654 44666  555


Q ss_pred             EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      .|+.+++........+.-..-.|+|+|+.++..++.....    .++....     .+.....+....+.-..-.|+|+|
T Consensus       267 ~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p----~I~~~~~-----~g~~~~riT~~~~~~~~p~~SpdG  337 (425)
T COG0823         267 MDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRP----QIYLYDL-----EGSQVTRLTFSGGGNSNPVWSPDG  337 (425)
T ss_pred             EcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCc----ceEEECC-----CCCceeEeeccCCCCcCccCCCCC
Confidence            5777666444333444445788999999999887643222    2222221     112223333333333367899999


Q ss_pred             CEEEEeeC-CCc--EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC
Q 021925          159 RTIISAGE-DAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL  211 (305)
Q Consensus       159 ~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  211 (305)
                      ++++..+. +|.  |.+.|+.++...+.+.    .......-.+.++++.+...+.
T Consensus       338 ~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt----~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         338 DKIVFESSSGGQWDIDKNDLASGGKIRILT----STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CEEEEEeccCCceeeEEeccCCCCcEEEcc----ccccCCCCCcCCCCceEEEecc
Confidence            99987764 354  7777776665444443    3334445567888887665443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=2.7e-05  Score=67.12  Aligned_cols=195  Identities=11%  Similarity=0.081  Sum_probs=125.7

Q ss_pred             EEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCC-ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCC
Q 021925           59 DVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG  136 (305)
Q Consensus        59 ~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (305)
                      +|++.+..++.|+.+|.|.+.+- +.+.+..+. .+.. +..+....+..++++...+.......+.+|++.......+.
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            36778889999999999988873 233334444 3333 44444444445666555444333336788888776544433


Q ss_pred             ceE--EEEec-----cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC--CCcEeeeeccccCCccceEEEEEcCCCCEEE
Q 021925          137 ESV--LILKG-----PQGRINRAVWGPLNRTIISAGEDAIVRIWDTE--TGKLLKESDKETGHKKTITSLAKAADGSHFL  207 (305)
Q Consensus       137 ~~~--~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  207 (305)
                      ...  ..+.+     ...++.+++.+.+-+.+|.|-.+|.|..+.-.  ..+-.+... ......+|+.+++..++..++
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~-~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY-SHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee-eccCCCCceeeEEecCCceeE
Confidence            444  22223     25678899999999999999999999988432  111111111 113578999999999988744


Q ss_pred             EEeCCCeEEEEEcCCceEE-EEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          208 TGSLDKSAKLWDARTLELI-KTYV-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       208 ~~~~dg~i~iwd~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      -...-..|.+|.+....+. ..+. ++.+++|.++++....+++|++...
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l  237 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFL  237 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceE
Confidence            4444567999998844433 3344 7778999999988776777766653

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.61  E-value=7.8e-05  Score=63.39  Aligned_cols=184  Identities=13%  Similarity=0.039  Sum_probs=116.3

Q ss_pred             EcCCCcEEEEEe-CCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCce
Q 021925           60 VSRDSMTLITGS-ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES  138 (305)
Q Consensus        60 ~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (305)
                      +.|||+.+...+ ..+.+.+.|.++.+...++..+.....+++++++++++++.-+.-.   ...+..+...    ....
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~---G~tl~em~a~----e~d~  272 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEE---GVTLAEMMAA----ERDW  272 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCccc---Ccceeeeccc----cCce
Confidence            345666553332 3567888899988888888888888999999999999887521100   0011111000    0001


Q ss_pred             EEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC-----CcEeeeeccccCCccceEEEEEcCCCCEEEEEe-CC
Q 021925          139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET-----GKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LD  212 (305)
Q Consensus       139 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d  212 (305)
                      ...+....  +  .++.++|++...+  ++.|.+.|.++     .+.+..+.    -......+.++|||+++++++ .+
T Consensus       273 ~vvfni~~--i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP----VGKsPHGV~vSPDGkylyVanklS  342 (635)
T PRK02888        273 VVVFNIAR--I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP----VPKNPHGVNTSPDGKYFIANGKLS  342 (635)
T ss_pred             EEEEchHH--H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE----CCCCccceEECCCCCEEEEeCCCC
Confidence            11110000  0  1234567766653  57899999998     34555554    456678899999999877655 58


Q ss_pred             CeEEEEEcCCceE------------EEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925          213 KSAKLWDARTLEL------------IKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       213 g~i~iwd~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                      .+|.|.|+++.+.            +.+...+......+|.++|....+-.-|+....|.
T Consensus       343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn  402 (635)
T PRK02888        343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN  402 (635)
T ss_pred             CcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence            9999999988653            45555555567789999998666666666644333

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=1.3e-06  Score=74.96  Aligned_cols=70  Identities=19%  Similarity=0.163  Sum_probs=62.9

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|+++|..++++..-|.|.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            5679999998889999999999999988777666667799999999999999999999999999999876

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.57  E-value=0.00022  Score=57.56  Aligned_cols=209  Identities=13%  Similarity=0.099  Sum_probs=120.4

Q ss_pred             CceEEEEcCCCeeeEEecC-CCcceEEEE---EcCC----CcEEEEEeC----------CCcEEEEecCCC-------Ce
Q 021925           32 HTPTVWFADNGERLGTYRG-HNGAVWCCD---VSRD----SMTLITGSA----------DQTAKLWNVETG-------AQ   86 (305)
Q Consensus        32 g~v~iw~~~~~~~~~~~~~-~~~~v~~i~---~~~~----~~~l~s~~~----------dg~v~vwd~~~~-------~~   86 (305)
                      ..|++.|..+.+.+.++.- ....+.+++   +..+    ..+|++|+.          .|.|.++++.+.       +.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3578888887777665542 233445444   3332    467777643          288999999884       23


Q ss_pred             eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC--CeeEEEEcCCCCEEEEe
Q 021925           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISA  164 (305)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~  164 (305)
                      +.....+++|.+++-- ++.++++..       ..+.++++....      .......+..  .+.++...  +++++.|
T Consensus        82 i~~~~~~g~V~ai~~~-~~~lv~~~g-------~~l~v~~l~~~~------~l~~~~~~~~~~~i~sl~~~--~~~I~vg  145 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGRLVVAVG-------NKLYVYDLDNSK------TLLKKAFYDSPFYITSLSVF--KNYILVG  145 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTEEEEEET-------TEEEEEEEETTS------SEEEEEEE-BSSSEEEEEEE--TTEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCEEEEeec-------CEEEEEEccCcc------cchhhheecceEEEEEEecc--ccEEEEE
Confidence            3444588899988877 444444443       344455554322      1222222223  44555444  6799999


Q ss_pred             eCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----------ceEEEEEeeC
Q 021925          165 GEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-----------LELIKTYVTE  232 (305)
Q Consensus       165 ~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------~~~~~~~~~~  232 (305)
                      .....+.++..+. ...+..+.. ......++++.+-++++.++.+..+|.+.++....           ......+..+
T Consensus       146 D~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg  224 (321)
T PF03178_consen  146 DAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG  224 (321)
T ss_dssp             ESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S
T ss_pred             EcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC
Confidence            9888888775443 222333321 12356688888886667999999999999998762           2344556677


Q ss_pred             CCeeEE---EecCC--CC------cEEEeeCCcEEE
Q 021925          233 RPVNAV---TMSPL--LD------HVCIGEPQTIKF  257 (305)
Q Consensus       233 ~~v~~~---~~~~~--~~------~l~~~~~~~~~~  257 (305)
                      ..|+++   ++.|.  +.      .++.++.+|...
T Consensus       225 ~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  225 DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred             CccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence            888888   66662  22      266677777654

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.54  E-value=0.00022  Score=58.36  Aligned_cols=231  Identities=14%  Similarity=0.038  Sum_probs=119.7

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CC----------------CcceEEEEEcCCCcEEEEEeC
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GH----------------NGAVWCCDVSRDSMTLITGSA   72 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~----------------~~~v~~i~~~~~~~~l~s~~~   72 (305)
                      ...+....|||+|+.+|... ++.|.+++..+++..+... +-                -+.-..+.||||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56788999999999999876 6799999887775443221 10                112356889999999887644


Q ss_pred             C-CcE-----------------------------------EEEecCCCCeeEE-Ee-----eCCCceEEEEecCCceEEE
Q 021925           73 D-QTA-----------------------------------KLWNVETGAQLFT-FN-----FDSPARSVDFAVGDKLAVI  110 (305)
Q Consensus        73 d-g~v-----------------------------------~vwd~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~~~~  110 (305)
                      | ..|                                   .|+|+.+++.... ..     ....+..+.|.+++..+++
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            3 222                                   2333333332110 00     2223566777777773333


Q ss_pred             eCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe---eEEEEc-CCCC-EEEEeeCCCc--EEEEeCCCCcEeee
Q 021925          111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI---NRAVWG-PLNR-TIISAGEDAI--VRIWDTETGKLLKE  183 (305)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~-~~~~-~l~~~~~dg~--i~iwd~~~~~~~~~  183 (305)
                      ...........+...+...    ...+.+. .....+.+   ....+. +++. ++.....||.  |.+++...+. .+.
T Consensus       201 ~~~nR~q~~~~l~~~d~~t----g~~~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~  274 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDAST----GETRVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQ  274 (353)
T ss_dssp             EEEETTSTEEEEEEEEECT----TTCEEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEE
T ss_pred             EEcccCCCEEEEEEEECCC----CceeEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eec
Confidence            3221111112222222211    1111111 12222222   345554 6665 4445556774  5566666555 334


Q ss_pred             eccccCCccceEE-EEEcCCCCEEE-EEeC----CCeEEEEEcCCceEEEEEeeCCCe-eEEEecCCCCcEEEe
Q 021925          184 SDKETGHKKTITS-LAKAADGSHFL-TGSL----DKSAKLWDARTLELIKTYVTERPV-NAVTMSPLLDHVCIG  250 (305)
Q Consensus       184 ~~~~~~~~~~v~~-~~~~~~~~~l~-~~~~----dg~i~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~  250 (305)
                      +.   ...-.|+. +.++++++.|. ++..    ...++.-++..+..+..+...... ..+.|||++++++..
T Consensus       275 lT---~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  275 LT---SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             SS----SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             cc---cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence            43   34555644 67788776654 5554    235666677733444445544444 499999999997764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.52  E-value=0.0002  Score=59.62  Aligned_cols=211  Identities=12%  Similarity=0.069  Sum_probs=112.7

Q ss_pred             EEEEeeCCCceEEEEcCCCeeeEEecCCCcceE-EEEEcC--CCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCc----
Q 021925           24 LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-CCDVSR--DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA----   96 (305)
Q Consensus        24 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~-~i~~~~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v----   96 (305)
                      .++.++.+|.+.-+|.++|+.+.+......... ...-+|  .+..++.++.+|.+...|.++++.+.......+.    
T Consensus       162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~  241 (394)
T PRK11138        162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE  241 (394)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc
Confidence            455566677777778777777666543211000 000112  1235666778899999999998877765422110    


Q ss_pred             ----eEEEEec---CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925           97 ----RSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (305)
Q Consensus        97 ----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  169 (305)
                          ..+..+|   ++..++...++      .+...+..      .++.+-...  ......+.  ..+..++.++.+|.
T Consensus       242 ~~~~~~~~~sP~v~~~~vy~~~~~g------~l~ald~~------tG~~~W~~~--~~~~~~~~--~~~~~vy~~~~~g~  305 (394)
T PRK11138        242 IDRLVDVDTTPVVVGGVVYALAYNG------NLVALDLR------SGQIVWKRE--YGSVNDFA--VDGGRIYLVDQNDR  305 (394)
T ss_pred             hhcccccCCCcEEECCEEEEEEcCC------eEEEEECC------CCCEEEeec--CCCccCcE--EECCEEEEEcCCCe
Confidence                0011111   33333333221      11111111      111111110  01111111  23567888889999


Q ss_pred             EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee-CCCeeE-EEecCCCCcE
Q 021925          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNA-VTMSPLLDHV  247 (305)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l  247 (305)
                      +..+|..+++.+.......  .....+...  .+..|+.++.||.+...|..+|+.+.+.+. ...+.+ ..+  .+..|
T Consensus       306 l~ald~~tG~~~W~~~~~~--~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l  379 (394)
T PRK11138        306 VYALDTRGGVELWSQSDLL--HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKL  379 (394)
T ss_pred             EEEEECCCCcEEEcccccC--CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEE
Confidence            9999999998766543211  111122222  245788899999999999999999888763 333332 222  24467


Q ss_pred             EEeeCCcEE
Q 021925          248 CIGEPQTIK  256 (305)
Q Consensus       248 ~~~~~~~~~  256 (305)
                      ++++.++..
T Consensus       380 ~v~t~~G~l  388 (394)
T PRK11138        380 LIQARDGTV  388 (394)
T ss_pred             EEEeCCceE
Confidence            888888764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=2.5e-06  Score=73.33  Aligned_cols=104  Identities=12%  Similarity=0.117  Sum_probs=78.8

Q ss_pred             cccceEEEEEcCCCCEEEEeeC----CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            9 HERPLTYLKYNKDGDLLFSCAK----DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~----dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      -.+.-+-..|+|...++|.++-    .|+|.||- ++|++..... ..-.+++++|+|..-.|++|-.-|.+.+|...+.
T Consensus        14 sdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~   91 (1416)
T KOG3617|consen   14 SDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT   91 (1416)
T ss_pred             ccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCc
Confidence            3344455789999999998763    58999984 6777544332 2334677999998888889888999999997655


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCc
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDP  114 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~  114 (305)
                      +.-.... ++.++..+.|+++|..++++...
T Consensus        92 e~htv~~th~a~i~~l~wS~~G~~l~t~d~~  122 (1416)
T KOG3617|consen   92 ETHTVVETHPAPIQGLDWSHDGTVLMTLDNP  122 (1416)
T ss_pred             eeeeeccCCCCCceeEEecCCCCeEEEcCCC
Confidence            4433332 88999999999999999998764

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=3.7e-05  Score=65.85  Aligned_cols=160  Identities=13%  Similarity=0.188  Sum_probs=102.2

Q ss_pred             EecccccceEEEEEcCC-------------CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC-----CcE
Q 021925            5 LMKGHERPLTYLKYNKD-------------GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-----SMT   66 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~-------------~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~   66 (305)
                      .|..|.+.|....+.-+             |+++++|+.||.|.|-.+-+.+...++. ...++.+++++|+     .+.
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~  131 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQ  131 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhh
Confidence            45668877777766555             9999999999999999998888877776 5678999999997     468


Q ss_pred             EEEEeCCCcEEEEecC---CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe
Q 021925           67 LITGSADQTAKLWNVE---TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (305)
Q Consensus        67 l~s~~~dg~v~vwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (305)
                      +++||.-| +.++.-+   ....+..-...++|.++.|.  |.+++-+.+.+..+.....-..+.......      ...
T Consensus       132 fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p~------~~~  202 (846)
T KOG2066|consen  132 FVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPPPS------QSV  202 (846)
T ss_pred             eeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCCCC------CCC
Confidence            99999988 8887532   22223233367788888875  566666665443333322222221111111      111


Q ss_pred             ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 021925          144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE  176 (305)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  176 (305)
                      ........+.|.++.+ |+.| ...+|+|..++
T Consensus       203 R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  203 RPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK  233 (846)
T ss_pred             CcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence            1122334578887665 4444 33568888877

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.2e-06  Score=72.58  Aligned_cols=93  Identities=19%  Similarity=0.176  Sum_probs=80.6

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceE-EEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      ...|.-+.|+|.-..+|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|++++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3457789999999999999999999999877 777888887777777 99999999999999999999999999999888


Q ss_pred             E--EeeCCCceEEEEec
Q 021925           89 T--FNFDSPARSVDFAV  103 (305)
Q Consensus        89 ~--~~~~~~v~~~~~~~  103 (305)
                      .  +.....+.++.|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            7  44666777777763

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.45  E-value=0.00039  Score=58.00  Aligned_cols=232  Identities=12%  Similarity=0.073  Sum_probs=120.5

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~   87 (305)
                      ...-....+.++|+|+.++.+ .||.-.|+.....+...     .+.-....|.+.+ .+|+-...++|.++.--+.+..
T Consensus        30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred             CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence            344557899999999999985 48888888744444322     2334667898855 5777777889999743333343


Q ss_pred             EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (305)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  167 (305)
                      ..+..+..+..+-.   |.++...++..      +..+++      +..+.+..+...  +|..+.|++++++++..+.+
T Consensus       103 k~i~~~~~~~~If~---G~LL~~~~~~~------i~~yDw------~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~  165 (443)
T PF04053_consen  103 KSIKLPFSVEKIFG---GNLLGVKSSDF------ICFYDW------ETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD  165 (443)
T ss_dssp             -----SS-EEEEE----SSSEEEEETTE------EEEE-T------TT--EEEEESS---E-EEEEE-TTSSEEEEE-S-
T ss_pred             eEEcCCcccceEEc---CcEEEEECCCC------EEEEEh------hHcceeeEEecC--CCcEEEEECCCCEEEEEeCC
Confidence            44554444444433   66666665432      333333      223445454433  38899999999999988765


Q ss_pred             CcEEEEeCCCC-----------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCee
Q 021925          168 AIVRIWDTETG-----------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN  236 (305)
Q Consensus       168 g~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~  236 (305)
                       .+.+++....           .....+.   .....|.+.+|..+  .++-.+.. +++-  +..|+....-..+.++.
T Consensus       166 -~i~il~~~~~~~~~~~~~g~e~~f~~~~---E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~y  236 (443)
T PF04053_consen  166 -SIYILKYNLEAVAAIPEEGVEDAFELIH---EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLY  236 (443)
T ss_dssp             -SEEEEEE-HHHHHHBTTTB-GGGEEEEE---EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--E
T ss_pred             -eEEEEEecchhcccccccCchhceEEEE---EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceE
Confidence             6777775433           0222222   12467888888766  44433334 6776  44455433333466778


Q ss_pred             EEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      =+...|..+.+.....+.......+..-.+.+....
T Consensus       237 llgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av  272 (443)
T PF04053_consen  237 LLGYLPKENRLYLIDRDGNVISYELDLSELEFKTAV  272 (443)
T ss_dssp             EEEEETTTTEEEEE-TT--EEEEE--HHHHHHHHHH
T ss_pred             EEEEEccCCEEEEEECCCCEEEEEECHHHHHHHHHH
Confidence            888888778888888888766666655444444333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=0.00054  Score=56.54  Aligned_cols=222  Identities=17%  Similarity=0.147  Sum_probs=145.5

Q ss_pred             EEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC---CCcEEEEecCCCCeeEE
Q 021925           14 TYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFT   89 (305)
Q Consensus        14 ~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~~   89 (305)
                      ..++.++.++.++ +...++.|.+.|..+.+......--. ....++++|+++.+..+..   ++++.+.|..+++....
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            4667788777444 44456899999987777766655322 5688999999987776655   68899999999998888


Q ss_pred             EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC--
Q 021925           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED--  167 (305)
Q Consensus        90 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--  167 (305)
                      .........+++.|++..+..+...    .+.+...+........ .. ......-......+.++|+++++......  
T Consensus       156 ~~vG~~P~~~a~~p~g~~vyv~~~~----~~~v~vi~~~~~~v~~-~~-~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~  229 (381)
T COG3391         156 IPVGNTPTGVAVDPDGNKVYVTNSD----DNTVSVIDTSGNSVVR-GS-VGSLVGVGTGPAGIAVDPDGNRVYVANDGSG  229 (381)
T ss_pred             EecCCCcceEEECCCCCeEEEEecC----CCeEEEEeCCCcceec-cc-cccccccCCCCceEEECCCCCEEEEEeccCC
Confidence            6655445999999999977776521    1222222211110000 00 00011222344678899999876665543  


Q ss_pred             -CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceEEEEEeeCC----CeeEEEec
Q 021925          168 -AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTYVTER----PVNAVTMS  241 (305)
Q Consensus       168 -g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~----~v~~~~~~  241 (305)
                       +.+...|..++.....-... +.. ....+..+|+|..+.+... .+.+.+.|..+.+.........    .+..+++.
T Consensus       230 ~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~  307 (381)
T COG3391         230 SNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAIS  307 (381)
T ss_pred             CceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccce
Confidence             58999999988776652211 222 5567889999999887744 4899999999888877765222    35566665


Q ss_pred             CCC
Q 021925          242 PLL  244 (305)
Q Consensus       242 ~~~  244 (305)
                      +..
T Consensus       308 ~~~  310 (381)
T COG3391         308 PLY  310 (381)
T ss_pred             eec
Confidence            544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.43  E-value=0.0001  Score=61.29  Aligned_cols=196  Identities=13%  Similarity=0.094  Sum_probs=109.1

Q ss_pred             CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc----------ce-EEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----------AV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (305)
Q Consensus        21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~----------~v-~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~   89 (305)
                      .+..+++++.+|.+.-+|.++|+.+.+......          .+ ..+..  ++..++.++.+|.+.-+|.++|+.+.+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence            355777788899999999999998876643220          00 01111  345677788899999999999999988


Q ss_pred             EeeCCCceEEEEecCCceEEEeCCcceeeee---eEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNS---AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (305)
Q Consensus        90 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  166 (305)
                      ......+.+--...++..++...++.+....   ....|.....      .+.....+...++    .  .+..++.++.
T Consensus       146 ~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~------~~~~~~~~~~sP~----v--~~~~v~~~~~  213 (394)
T PRK11138        146 TKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLD------VPSLTLRGESAPA----T--AFGGAIVGGD  213 (394)
T ss_pred             ccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCC------CCcccccCCCCCE----E--ECCEEEEEcC
Confidence            8765544332222244444433322111111   1112222110      0000000111111    1  1235667778


Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCc-c---ceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHK-K---TITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~-~---~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      +|.+..+|..+++.+.......... .   ....+.-+|  .+..++.++.+|.+..+|..+|+.+....
T Consensus       214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~  283 (394)
T PRK11138        214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE  283 (394)
T ss_pred             CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec
Confidence            8999999999988766543111000 0   011111122  24567777889999999999998876654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.43  E-value=4.4e-06  Score=70.23  Aligned_cols=146  Identities=13%  Similarity=0.117  Sum_probs=98.8

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEe-cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~   87 (305)
                      |...|.--+++..+++++.|+.-|.+++|+...++....- .+-.+.+..+..+++..++|.|+..|.|.++-+..+...
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            3445656667778999999999999999997766543322 234455667778888888899999999999987654321


Q ss_pred             EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (305)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  167 (305)
                      ...                 .+..                             .-+.|...|++++|++++..+++|...
T Consensus       112 ~~~-----------------~~t~-----------------------------~d~~~~~rVTal~Ws~~~~k~ysGD~~  145 (726)
T KOG3621|consen  112 DLD-----------------YVTP-----------------------------CDKSHKCRVTALEWSKNGMKLYSGDSQ  145 (726)
T ss_pred             cce-----------------eecc-----------------------------ccccCCceEEEEEecccccEEeecCCC
Confidence            110                 0000                             012378899999999999999999999


Q ss_pred             CcEEEEeCCCC-cEeeeeccccCCccceEEEEEc
Q 021925          168 AIVRIWDTETG-KLLKESDKETGHKKTITSLAKA  200 (305)
Q Consensus       168 g~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~  200 (305)
                      |+|..-.+.+. ......+......+.|-.+...
T Consensus       146 Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  146 GKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             ceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            99999888762 1111111111345667666654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.43  E-value=0.00047  Score=54.57  Aligned_cols=228  Identities=13%  Similarity=0.114  Sum_probs=136.0

Q ss_pred             EEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe----
Q 021925           17 KYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN----   91 (305)
Q Consensus        17 ~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~----   91 (305)
                      .|.++.. ++.+--..+.|.-|+..+++. ..+. +.+.+.++.....+..|+++..  -+.+++.+++..+..+.    
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence            4667666 444445577888888776543 2333 3334455544444445555433  36777776665533332    


Q ss_pred             --eCCCceEEEEecCCceEEEeCCc----ceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           92 --FDSPARSVDFAVGDKLAVITTDP----FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        92 --~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                        .....+.....|+|.+.+.....    .........++.+..     .+..+..+..+-...+.++||||++.|+.+.
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-----~g~~~~l~~~~~~~~NGla~SpDg~tly~aD  181 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-----DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD  181 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-----CCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence              22456678888998888876651    111111112333321     2344555555566678899999998777665


Q ss_pred             C-CCcEEEEeCCC--CcEee--eeccccCCccceEEEEEcCCCCEEEEEeCCC-eEEEEEcCCceEEEEEeeC-CCeeEE
Q 021925          166 E-DAIVRIWDTET--GKLLK--ESDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTE-RPVNAV  238 (305)
Q Consensus       166 ~-dg~i~iwd~~~--~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~-~~v~~~  238 (305)
                      . .+.|.-|++..  +..-.  .........+..-.++...+|.+.+++..+| .|.+|+.. ++++..+..+ ..++++
T Consensus       182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~  260 (307)
T COG3386         182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP  260 (307)
T ss_pred             CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence            4 57888887752  11111  0111112345566778888888776555554 89999988 9999998855 778888


Q ss_pred             Eec-CCCCcEEEeeCCc
Q 021925          239 TMS-PLLDHVCIGEPQT  254 (305)
Q Consensus       239 ~~~-~~~~~l~~~~~~~  254 (305)
                      +|- |+.+.|.+.+...
T Consensus       261 ~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         261 AFGGPDLNTLYITSARS  277 (307)
T ss_pred             eEeCCCcCEEEEEecCC
Confidence            885 5566666554443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=2e-06  Score=71.36  Aligned_cols=93  Identities=19%  Similarity=0.182  Sum_probs=79.5

Q ss_pred             CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceE-EEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  224 (305)
                      ...+..+.|+|.-..+|.+..+|.|.+..+. .+.+..+.   -+...++ +++|.|||+.||.|-.||+|++.|+.++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip---~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP---IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc---CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            3457779999999999999999999999988 66777775   3555566 99999999999999999999999999999


Q ss_pred             EEEE--EeeCCCeeEEEecC
Q 021925          225 LIKT--YVTERPVNAVTMSP  242 (305)
Q Consensus       225 ~~~~--~~~~~~v~~~~~~~  242 (305)
                      .+..  +....+|.++-|++
T Consensus        96 ~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ceeccccccccchheeeccc
Confidence            8888  44777888988874

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.41  E-value=2.4e-06  Score=64.92  Aligned_cols=176  Identities=16%  Similarity=0.251  Sum_probs=113.1

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe---eeEEecCCC-----cceEEEEEcCCC-cEEEEEeCCCcEE
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHN-----GAVWCCDVSRDS-MTLITGSADQTAK   77 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~-----~~v~~i~~~~~~-~~l~s~~~dg~v~   77 (305)
                      ..|.-.|+++.++.|.+.++++. |=.|.+|+++-..   .+..++.|.     .-|++..|+|.. +.+.-.+..|.|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            57889999999999998888764 7789999876322   233344454     468899999943 4555666779999


Q ss_pred             EEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        78 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      +-|++.......-.   .                            .....     ..+-...-+.+-.+.|..+.|+++
T Consensus       248 l~DlRq~alcdn~~---k----------------------------lfe~~-----~D~v~~~ff~eivsSISD~kFs~n  291 (460)
T COG5170         248 LNDLRQSALCDNSK---K----------------------------LFELT-----IDGVDVDFFEEIVSSISDFKFSDN  291 (460)
T ss_pred             ehhhhhhhhccCch---h----------------------------hhhhc-----cCcccchhHHHHhhhhcceEEcCC
Confidence            99998543211000   0                            00000     000111122344567888999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCC-cEeeeeccccC---------Cccc---eEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          158 NRTIISAGEDAIVRIWDTETG-KLLKESDKETG---------HKKT---ITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~---------~~~~---v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      |+++++-+. -+|++||.+.. .++.++.....         ....   -..+.|+.|.+.+++|+..+..-++-.
T Consensus       292 gryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         292 GRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             CcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence            999987654 68999999864 45665532100         1112   235678888888999998887777753

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.39  E-value=0.0009  Score=56.15  Aligned_cols=229  Identities=11%  Similarity=0.017  Sum_probs=118.7

Q ss_pred             ceEEEEEcCCCCEEEEe-eCCC----ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC-----------c
Q 021925           12 PLTYLKYNKDGDLLFSC-AKDH----TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ-----------T   75 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~-~~dg----~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-----------~   75 (305)
                      .+...+++|+|+++|.+ +..|    .+++.|+++++.+...-.. ..-..+.|.++++.|+....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467899999998865 3333    5999999999876532111 1123499999987766554332           3


Q ss_pred             EEEEecCCCCee--EEEeeCC--C-ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe-
Q 021925           76 AKLWNVETGAQL--FTFNFDS--P-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI-  149 (305)
Q Consensus        76 v~vwd~~~~~~~--~~~~~~~--~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-  149 (305)
                      |..|.+.+....  ..+..+.  . ...+..+++++++++....... ...+.+.+.....  ........+......+ 
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~--~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGG--SPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTT--TSS-SEEEEEESSSS-E
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccC--CCcCCcEEEeCCCCceE
Confidence            778888766543  3444222  2 4578889999998876543333 2333333333211  1122333333333333 


Q ss_pred             eEEEEcCCCCEEEEee---CCCcEEEEeCCCCcE---eeeeccccCCcc--ceEEEEEcCCCCEEEEEeCCC--eEEEEE
Q 021925          150 NRAVWGPLNRTIISAG---EDAIVRIWDTETGKL---LKESDKETGHKK--TITSLAKAADGSHFLTGSLDK--SAKLWD  219 (305)
Q Consensus       150 ~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg--~i~iwd  219 (305)
                      ..+... .+.+++...   ..+.|.-.++.....   ...+.   .+..  .+..+.... +.+++....++  .|++++
T Consensus       281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~  355 (414)
T PF02897_consen  281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFK-DYLVLSYRENGSSRLRVYD  355 (414)
T ss_dssp             EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEET-TEEEEEEEETTEEEEEEEE
T ss_pred             EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEEC-CEEEEEEEECCccEEEEEE
Confidence            334333 344444332   246787788877652   21222   2333  455554432 23444444454  488899


Q ss_pred             cCCceEEEEEe--eCCCeeEEEecCCCCcEEE
Q 021925          220 ARTLELIKTYV--TERPVNAVTMSPLLDHVCI  249 (305)
Q Consensus       220 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~  249 (305)
                      +..+.......  ..+.|..+...++++.+..
T Consensus       356 ~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~  387 (414)
T PF02897_consen  356 LDDGKESREIPLPEAGSVSGVSGDFDSDELRF  387 (414)
T ss_dssp             TT-TEEEEEEESSSSSEEEEEES-TT-SEEEE
T ss_pred             CCCCcEEeeecCCcceEEeccCCCCCCCEEEE
Confidence            88444444444  2333455555555554443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.38  E-value=0.00022  Score=53.35  Aligned_cols=82  Identities=12%  Similarity=0.028  Sum_probs=62.3

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCc-eEEE
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA-RSVD  100 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v-~~~~  100 (305)
                      |++++.|+..|.+++-+..+|+....+..-..-=......+++..+..++.|++.+..|.++..++.+.+.++.+ .+-+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~  142 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV  142 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence            567888999999999999999887777643222123345678889999999999999999999999887755443 3445


Q ss_pred             Eec
Q 021925          101 FAV  103 (305)
Q Consensus       101 ~~~  103 (305)
                      ..|
T Consensus       143 i~~  145 (354)
T KOG4649|consen  143 IAP  145 (354)
T ss_pred             ecC
Confidence            555

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.37  E-value=0.00064  Score=53.65  Aligned_cols=237  Identities=8%  Similarity=0.030  Sum_probs=133.4

Q ss_pred             EEEEcCCCCEEEEeeC----------CCceEEEEcCCCeeeEEecCCC-------cceEEEEEcCCCcEEEEEeC--CCc
Q 021925           15 YLKYNKDGDLLFSCAK----------DHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGSA--DQT   75 (305)
Q Consensus        15 ~~~~~~~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~s~~~--dg~   75 (305)
                      .+..+|+++.+++++.          .-.|.+||..+.++...+.--.       .....++++.|+++++....  --.
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            3567899998887532          3378999999987776543211       12234577888988876543  567


Q ss_pred             EEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE----EEeccCCC-ee
Q 021925           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL----ILKGPQGR-IN  150 (305)
Q Consensus        76 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-i~  150 (305)
                      |.|-|+...+.+..+..++...-.-.. +..+...|.++....      ..+.     ..++...    .+.....+ +.
T Consensus       120 VtVVDl~~~kvv~ei~~PGC~~iyP~~-~~~F~~lC~DGsl~~------v~Ld-----~~Gk~~~~~t~~F~~~~dp~f~  187 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTPGCWLIYPSG-NRGFSMLCGDGSLLT------VTLD-----ADGKEAQKSTKVFDPDDDPLFE  187 (342)
T ss_dssp             EEEEETTTTEEEEEEEGTSEEEEEEEE-TTEEEEEETTSCEEE------EEET-----STSSEEEEEEEESSTTTS-B-S
T ss_pred             EEEEECCCCceeeeecCCCEEEEEecC-CCceEEEecCCceEE------EEEC-----CCCCEeEeeccccCCCCccccc
Confidence            999999999888887766543333222 334555555433221      1111     0111111    11111222 22


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe--eeecccc-------CCccceEEEEEcCCCCEEEEEeC---CC-----
Q 021925          151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDKET-------GHKKTITSLAKAADGSHFLTGSL---DK-----  213 (305)
Q Consensus       151 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~---dg-----  213 (305)
                      .-++...+..++--+.+|.|+--|+......  ..+....       -..+.-.-+++++..+.|++--.   +|     
T Consensus       188 ~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp  267 (342)
T PF06433_consen  188 HPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP  267 (342)
T ss_dssp             --EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred             ccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence            3344455555666778899999888765422  2221110       01223344677775555544322   22     


Q ss_pred             --eEEEEEcCCceEEEEEeeCCCeeEEEecCCCC-cEEEeeC-CcEEEEEEeehhhhhh
Q 021925          214 --SAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVCIGEP-QTIKFMLLVYLFVLFL  268 (305)
Q Consensus       214 --~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~-~~~~~~~~~~~~~~~~  268 (305)
                        .|.++|+.+++.+..+..+.++.+++.+.+.+ +|++.+. ++.     +.+++...
T Consensus       268 gteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~-----l~v~D~~t  321 (342)
T PF06433_consen  268 GTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGT-----LDVYDAAT  321 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTE-----EEEEETTT
T ss_pred             ceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCe-----EEEEeCcC
Confidence              38888999999999999777899999998876 4544443 444     44454443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.36  E-value=0.00078  Score=54.18  Aligned_cols=101  Identities=18%  Similarity=0.191  Sum_probs=50.8

Q ss_pred             eeEEEEcCCCCEEEEee-----CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC----------
Q 021925          149 INRAVWGPLNRTIISAG-----EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK----------  213 (305)
Q Consensus       149 i~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------  213 (305)
                      +..=-|.|+|..|.--+     .+..|.-+|+.+++.....+     ......+-.++||++++-=+.|.          
T Consensus       240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~  314 (386)
T PF14583_consen  240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGY  314 (386)
T ss_dssp             EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-----E-SEEEEEE-TTSSEEEEEE-------------
T ss_pred             cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-----CCceeeeEEcCCCCEEEecCCCCCccccccccc
Confidence            34456889997665322     24467778888776543222     22344566678998776544432          


Q ss_pred             ------eEEEEEcCCceEEEEEeeCC---------C--eeEEEecCCCCcEEEeeCCc
Q 021925          214 ------SAKLWDARTLELIKTYVTER---------P--VNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       214 ------~i~iwd~~~~~~~~~~~~~~---------~--v~~~~~~~~~~~l~~~~~~~  254 (305)
                            -|++++++.++......|..         .  =....|+|||++++..++..
T Consensus       315 ~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~  372 (386)
T PF14583_consen  315 KIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDME  372 (386)
T ss_dssp             ------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TT
T ss_pred             eecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCC
Confidence                  46778888776543333321         1  24678999999987765443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.1e-05  Score=63.58  Aligned_cols=162  Identities=10%  Similarity=0.056  Sum_probs=98.8

Q ss_pred             eEEEEcCCCeeeEEecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeC
Q 021925           34 PTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITT  112 (305)
Q Consensus        34 v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  112 (305)
                      |+..+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++...+..+...                   
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-------------------  235 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-------------------  235 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-------------------
Confidence            44444444555555667788999999999655 7888999999999999987766554322                   


Q ss_pred             CcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcE-eeeeccccCC
Q 021925          113 DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKL-LKESDKETGH  190 (305)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~  190 (305)
                                                        ..+++++|.-+. .+|..|-..|.|.+||++..+- +..+.. .-.
T Consensus       236 ----------------------------------~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a-~~t  280 (463)
T KOG1645|consen  236 ----------------------------------NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA-NVT  280 (463)
T ss_pred             ----------------------------------CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh-hhc
Confidence                                              456667777665 4677888899999999986442 222211 012


Q ss_pred             ccceEEEEE------cCCCCEEEEEeCCCeEEEEEcCC--c--eEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925          191 KKTITSLAK------AADGSHFLTGSLDKSAKLWDART--L--ELIKTYVTERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       191 ~~~v~~~~~------~~~~~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      ..+|..++.      .+.|.+|+....+  ...|++..  +  -++..+...+...+++.++..+.+++.-
T Consensus       281 ~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ty  349 (463)
T KOG1645|consen  281 INPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTY  349 (463)
T ss_pred             cCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEe
Confidence            233433332      2234444444433  45565432  2  2233333455666777777666665543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.29  E-value=1.7e-07  Score=77.65  Aligned_cols=162  Identities=17%  Similarity=0.225  Sum_probs=105.5

Q ss_pred             EecccccceEEEEEcC-CCCEEEEee----CCCceEEEEcCCC--eee--EEecC-CCcceEEEEEcCCCcEEEEEeCCC
Q 021925            5 LMKGHERPLTYLKYNK-DGDLLFSCA----KDHTPTVWFADNG--ERL--GTYRG-HNGAVWCCDVSRDSMTLITGSADQ   74 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~-~~~~l~s~~----~dg~v~iw~~~~~--~~~--~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg   74 (305)
                      +..+|..++++++|++ |.+.||+|-    .|..+.|||+.++  .+.  ..+.+ -.....+++|..+.+++++|...+
T Consensus        97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr  176 (783)
T KOG1008|consen   97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR  176 (783)
T ss_pred             ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence            4567888999999999 667788773    3578999999876  221  22222 334566889998889999999999


Q ss_pred             cEEEEecCCCCe-eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEE
Q 021925           75 TAKLWNVETGAQ-LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (305)
Q Consensus        75 ~v~vwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (305)
                      .++++|++.... ...+                                                      ....+..+.
T Consensus       177 ~~~ifdlRqs~~~~~sv------------------------------------------------------nTk~vqG~t  202 (783)
T KOG1008|consen  177 SVHIFDLRQSLDSVSSV------------------------------------------------------NTKYVQGIT  202 (783)
T ss_pred             hhhhhhhhhhhhhhhhh------------------------------------------------------hhhhcccce
Confidence            999999873211 1100                                                      011233455


Q ss_pred             EcC-CCCEEEEeeCCCcEEEEe-CCC-CcEeeeecc-ccCCccceEEEEEcCCCC-EEEEEeC-CCeEEEEEcC
Q 021925          154 WGP-LNRTIISAGEDAIVRIWD-TET-GKLLKESDK-ETGHKKTITSLAKAADGS-HFLTGSL-DKSAKLWDAR  221 (305)
Q Consensus       154 ~~~-~~~~l~~~~~dg~i~iwd-~~~-~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~l~~~~~-dg~i~iwd~~  221 (305)
                      .+| .++|+++-. ||.|.+|| .++ ..++..+.. .......+..++|+|... .+++.+. .++|+++|+.
T Consensus       203 Vdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  203 VDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            667 566776655 99999999 333 233333321 111234589999999543 3455544 5789999976

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.24  E-value=0.00039  Score=56.89  Aligned_cols=217  Identities=13%  Similarity=0.066  Sum_probs=114.2

Q ss_pred             cCCCCEEEEee---------CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925           19 NKDGDLLFSCA---------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (305)
Q Consensus        19 ~~~~~~l~s~~---------~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~   89 (305)
                      |||+++++...         ..+.+.|+|+++++....... ...+....|+|+|+.++... ++.|.+.+..+++..+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            68888877642         346889999998765443332 56789999999999988875 47899999877744332


Q ss_pred             EeeC------------------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925           90 FNFD------------------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (305)
Q Consensus        90 ~~~~------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (305)
                      ...+                  ..-..+-|+|+++.++...-+.    ..+....+........         ..-.+..
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~----~~v~~~~~~~~~~~~~---------~yp~~~~  145 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE----REVPEYPLPDYSPPDS---------QYPEVES  145 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-----TTS-EEEEEEESSSTE---------SS-EEEE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC----cCCceEEeeccCCccc---------cCCcccc
Confidence            2211                  2346788999999888764211    1111111111000000         0001222


Q ss_pred             EEEcCCCCEEEEeeCCC--cEEEEeCCCCcEeeeec--cccCCccceEEEEEcCCCCEEEEE--eCC---CeEEEEEcCC
Q 021925          152 AVWGPLNRTIISAGEDA--IVRIWDTETGKLLKESD--KETGHKKTITSLAKAADGSHFLTG--SLD---KSAKLWDART  222 (305)
Q Consensus       152 ~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~--~~d---g~i~iwd~~~  222 (305)
                      +.+--      .|..+.  .+.++|+.+++....-.  ........+..+.|.++++.|+..  +.+   -.+.++|..+
T Consensus       146 ~~YPk------~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t  219 (353)
T PF00930_consen  146 IRYPK------AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST  219 (353)
T ss_dssp             EE--B------TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT
T ss_pred             cccCC------CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC
Confidence            22211      122222  46678888776532111  112346778999999999844433  222   2477778877


Q ss_pred             ceEEEEEe--eCCCe---eEEEec-CCCCc-EEEeeCCcEE
Q 021925          223 LELIKTYV--TERPV---NAVTMS-PLLDH-VCIGEPQTIK  256 (305)
Q Consensus       223 ~~~~~~~~--~~~~v---~~~~~~-~~~~~-l~~~~~~~~~  256 (305)
                      ++......  ....|   ....+. +++.. +.....+|..
T Consensus       220 g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~  260 (353)
T PF00930_consen  220 GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYR  260 (353)
T ss_dssp             TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSE
T ss_pred             CceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCc
Confidence            65543333  23222   345554 55554 4444555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.23  E-value=8.5e-05  Score=61.83  Aligned_cols=138  Identities=17%  Similarity=0.163  Sum_probs=78.2

Q ss_pred             eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (305)
Q Consensus        92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  171 (305)
                      ....+..+.++|+++.+++++++...+.....            ...     ...+.-...+|.+.++ +|+-...+.|.
T Consensus        31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~------------~r~-----k~~G~g~~~vw~~~n~-yAv~~~~~~I~   92 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALA------------WRN-----KAFGSGLSFVWSSRNR-YAVLESSSTIK   92 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEETTEEEEEETTT------------TEE-----EEEEE-SEEEE-TSSE-EEEE-TTS-EE
T ss_pred             CCcCCeeEEECCCCCEEEEEcCCEEEEEEccC------------Ccc-----cccCceeEEEEecCcc-EEEEECCCeEE
Confidence            45568899999999999998776555444110            011     1124456688998554 66666688899


Q ss_pred             EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      ++.--+.+..+.+.    ....+..+-.   |..|+..+.+ .|.+||..+++.++++.... |..+.|+++|++++..+
T Consensus        93 I~kn~~~~~~k~i~----~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t  163 (443)
T PF04053_consen   93 IYKNFKNEVVKSIK----LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVT  163 (443)
T ss_dssp             EEETTEE-TT---------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-
T ss_pred             EEEcCccccceEEc----CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEe
Confidence            96322222222343    2223444433   7777777655 89999999999999998554 89999999999999998


Q ss_pred             CCcEE
Q 021925          252 PQTIK  256 (305)
Q Consensus       252 ~~~~~  256 (305)
                      .+...
T Consensus       164 ~~~i~  168 (443)
T PF04053_consen  164 KDSIY  168 (443)
T ss_dssp             S-SEE
T ss_pred             CCeEE
Confidence            88754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00320 WD40 WD40 repeats

Probab=98.17  E-value=8.6e-06  Score=42.24  Aligned_cols=39  Identities=44%  Similarity=0.642  Sum_probs=34.4

Q ss_pred             CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus        42 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      ++....+..|...|.++.|.++++.+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355667778999999999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.0028  Score=52.40  Aligned_cols=233  Identities=12%  Similarity=0.083  Sum_probs=146.6

Q ss_pred             ceEEEEEcCCCCEEEEee-CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeEE
Q 021925           12 PLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFT   89 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~   89 (305)
                      ....+...+++..+.... ....+..-+............-...-..++.++.++.+ ++...++.|.+.|..+.+....
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            345667788885444433 22245555444222222122111334677888888754 4455568999999998888888


Q ss_pred             EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCC
Q 021925           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDA  168 (305)
Q Consensus        90 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg  168 (305)
                      .........++++++++.+.++....  ....  +..+..    ...+.......-..+ ..++++|+++.++... .++
T Consensus       112 ~~vG~~P~~~~~~~~~~~vYV~n~~~--~~~~--vsvid~----~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~  182 (381)
T COG3391         112 IPVGLGPVGLAVDPDGKYVYVANAGN--GNNT--VSVIDA----ATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDN  182 (381)
T ss_pred             eeeccCCceEEECCCCCEEEEEeccc--CCce--EEEEeC----CCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCC
Confidence            88888999999999998888876532  1111  111111    122333332222223 8899999999766665 689


Q ss_pred             cEEEEeCCCCcEee-eeccccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEEE-EeeCC-CeeEEEecC
Q 021925          169 IVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKT-YVTER-PVNAVTMSP  242 (305)
Q Consensus       169 ~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~-~~~~~-~v~~~~~~~  242 (305)
                      .|.+.|.......+ .......-......+.++|+|..+......   +.+...|..++..... ...+. ....+..+|
T Consensus       183 ~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p  262 (381)
T COG3391         183 TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP  262 (381)
T ss_pred             eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence            99999987665553 110011233445678899999976655443   5999999998887766 22222 567889999


Q ss_pred             CCCcEEEeeCC
Q 021925          243 LLDHVCIGEPQ  253 (305)
Q Consensus       243 ~~~~l~~~~~~  253 (305)
                      +|+.+.+....
T Consensus       263 ~g~~~yv~~~~  273 (381)
T COG3391         263 AGKAAYVANSQ  273 (381)
T ss_pred             CCCEEEEEecC
Confidence            99998888544

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.13  E-value=0.00094  Score=57.97  Aligned_cols=193  Identities=10%  Similarity=0.108  Sum_probs=104.7

Q ss_pred             cceEEEEEcCCCCEEEEee------CCCceEEEEcC-CCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC----------
Q 021925           11 RPLTYLKYNKDGDLLFSCA------KDHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----------   73 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~------~dg~v~iw~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----------   73 (305)
                      ..+.+.+.+|+|+.+|...      .|+.-.||-.. .+.......+  .....-.|+|+|+.|++....          
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            4678899999999887765      24444455332 2333222232  237889999998877776532          


Q ss_pred             --CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC--CCceEEEEeccCCCe
Q 021925           74 --QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ--GGESVLILKGPQGRI  149 (305)
Q Consensus        74 --g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i  149 (305)
                        +.+.+.+++.++...  ..+..+..+.|+|+|..++...++      .+.+..+.+.....  -..+......-...+
T Consensus       428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g------~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGG------KVYLAVVEQTEDGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECC------EEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence              233333444433322  446689999999999988876642      33333333221110  011111122233346


Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925          150 NRAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (305)
Q Consensus       150 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  217 (305)
                      .++.|.+++..+ .+..++.-.+|.+.- +.....+. ......++..++-+++  .++....+|.+.+
T Consensus       500 ~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~-~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l  564 (591)
T PRK13616        500 VSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALP-SRNLSAPVVAVAASPS--TVYVTDARAVLQL  564 (591)
T ss_pred             ccceEecCCEEE-EEecCCCCceEEEecCCccccccC-CCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence            889999999854 555555444554432 22211112 1123566777776653  4555566664433

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.12  E-value=2.4e-05  Score=65.94  Aligned_cols=114  Identities=11%  Similarity=0.054  Sum_probs=86.0

Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  227 (305)
                      .+.--+++..+++++.|+.-|.+++|+...++....-.  .+....+..+..+++..++|.|+..|.|.++.+....+..
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~--~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN--EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccc--cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            34444566678999999999999999987665443322  1345566777889999899999999999999887643322


Q ss_pred             E-----Ee--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925          228 T-----YV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL  263 (305)
Q Consensus       228 ~-----~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (305)
                      .     ..  |...|++++|++++..+.+|.+.|......+..
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            1     22  577899999999999999999998876655544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.10  E-value=0.00077  Score=50.53  Aligned_cols=102  Identities=10%  Similarity=-0.018  Sum_probs=74.0

Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-CCee
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVN  236 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~v~  236 (305)
                      |++++.|+..|.+++.+.++|.....+...   ..--......+++..+..|+.|++.+..|.++..++...+-+ .-..
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~  139 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFV  139 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeeh---hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceec
Confidence            667999999999999999999888777622   211123345778999999999999999999999999887733 3334


Q ss_pred             EEEecCCCCcEEEeeCCcEEEEEEee
Q 021925          237 AVTMSPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                      +-+..|-...|.++...|..+-++..
T Consensus       140 sP~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  140 SPVIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             cceecCCCceEEEEeccceEEEEccC
Confidence            55666744455566556655544444

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.07  E-value=0.00091  Score=43.50  Aligned_cols=86  Identities=16%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             eEEEEEcC---CC-CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925           13 LTYLKYNK---DG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus        13 v~~~~~~~---~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      |++|++..   +| +.|++|+.|..|++|+-  .+.+..+.. .+.|+++.-... ..++.+..+|+|-+|+-  .+.+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            67777765   33 58999999999999973  466677764 466788877665 57888999999999974  56667


Q ss_pred             EEeeCCCceEEEEecC
Q 021925           89 TFNFDSPARSVDFAVG  104 (305)
Q Consensus        89 ~~~~~~~v~~~~~~~~  104 (305)
                      ..+.+..+.++.+..-
T Consensus        76 RiKSK~~~~~~~~~D~   91 (111)
T PF14783_consen   76 RIKSKNQVTSMAFYDI   91 (111)
T ss_pred             eeccCCCeEEEEEEcC
Confidence            7777777887776653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.07  E-value=0.0039  Score=53.45  Aligned_cols=199  Identities=15%  Similarity=0.173  Sum_probs=111.4

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeeeEEecCCCc------ce--EEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeC
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG------AV--WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD   93 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~------~v--~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~   93 (305)
                      +..++.++.++.|.-.|..+++.+-++.....      .+  ..+... ++..++.++.+|.|.-+|.++++.+......
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            34567778889999999999988876653322      01  011111 2257888888999999999999999888754


Q ss_pred             CCc------e-EEEEecCCceEEEeCCcce---eeeeeEEEEEeecccCCCCCceEEEEec-------------------
Q 021925           94 SPA------R-SVDFAVGDKLAVITTDPFM---ELNSAIHVKRIARDPADQGGESVLILKG-------------------  144 (305)
Q Consensus        94 ~~v------~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  144 (305)
                      ...      . ...+. ++.+++.......   ...+.+...+.      ..++..-....                   
T Consensus       140 ~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~------~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~  212 (488)
T cd00216         140 DQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDV------ETGKLLWRFYTTEPDPNAFPTWGPDRQMWG  212 (488)
T ss_pred             CCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEEC------CCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence            431      1 12222 2333332211100   00111111111      11111111111                   


Q ss_pred             cC-CCe-eEEEEcCCCCEEEEeeCCC------------------cEEEEeCCCCcEeeeeccccCCc--------cce-E
Q 021925          145 PQ-GRI-NRAVWGPLNRTIISAGEDA------------------IVRIWDTETGKLLKESDKETGHK--------KTI-T  195 (305)
Q Consensus       145 ~~-~~i-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~--------~~v-~  195 (305)
                      +. ..+ ...+..+.+..++.++.++                  .|.-+|..+++.+...+.. .+.        .++ .
T Consensus       213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~-~~~~~~~~~~s~p~~~  291 (488)
T cd00216         213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT-PHDLWDYDGPNQPSLA  291 (488)
T ss_pred             CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC-CCCCcccccCCCCeEE
Confidence            00 111 1345555567777776655                  7999999999998877532 111        111 1


Q ss_pred             EEEEcCCCC---EEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          196 SLAKAADGS---HFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       196 ~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      .+. .-++.   .++.++.+|.+...|.++|+.+....
T Consensus       292 ~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         292 DIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             ecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence            111 11333   57888899999999999999987765

The alignment model contains an 8-bladed beta-propeller.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.05  E-value=1.2e-06  Score=72.89  Aligned_cols=199  Identities=15%  Similarity=0.161  Sum_probs=127.5

Q ss_pred             CcceEEEEEcCC--CcEEEEEeCCCcEEEEecCCCCee-EE--EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEE
Q 021925           52 NGAVWCCDVSRD--SMTLITGSADQTAKLWNVETGAQL-FT--FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR  126 (305)
Q Consensus        52 ~~~v~~i~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (305)
                      ...+.|+++.-+  ...++.|..+|.|.+-..+...-. ..  -.+..++++++|++-+.-.++++-........+.+|+
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            345777777653  346788888999999987655432 22  2366788999999854444444445556677788888


Q ss_pred             eecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCE
Q 021925          127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSH  205 (305)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  205 (305)
                      +..............- +......+++|-.+.+.+.+|.....+.++|++........    -....+..+..+| .+.+
T Consensus       136 i~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s----vnTk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS----VNTKYVQGITVDPFSPNY  210 (783)
T ss_pred             cccccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh----hhhhhcccceecCCCCCc
Confidence            8765332222221111 24445568999988888999988889999999843222111    1344566778888 6667


Q ss_pred             EEEEeCCCeEEEEE-cCCc-eEEEEEeeC-----CCeeEEEecCCCC-cEEEeeCCcEE
Q 021925          206 FLTGSLDKSAKLWD-ARTL-ELIKTYVTE-----RPVNAVTMSPLLD-HVCIGEPQTIK  256 (305)
Q Consensus       206 l~~~~~dg~i~iwd-~~~~-~~~~~~~~~-----~~v~~~~~~~~~~-~l~~~~~~~~~  256 (305)
                      +++-. ||.|.+|| .++- .++..+.+.     ..+..++|.|... .+++...+...
T Consensus       211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t  268 (783)
T KOG1008|consen  211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT  268 (783)
T ss_pred             eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence            77665 99999999 3332 233333222     2488999999764 46666666654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.01  E-value=0.00035  Score=61.73  Aligned_cols=148  Identities=16%  Similarity=0.153  Sum_probs=88.1

Q ss_pred             CcEEEEE-eCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee--eeeEEEEEeecccCCCCCceEE
Q 021925           64 SMTLITG-SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL--NSAIHVKRIARDPADQGGESVL  140 (305)
Q Consensus        64 ~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  140 (305)
                      .++|+.- .....|+-.|++.|+.+..+.....+.-..+.|+.+..-........-  ...+..++.+..    ..+.+.
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~----~~k~v~  568 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS----GNKLVD  568 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCC----CCceee
Confidence            3444433 346789999999999999999666554555555433221111111100  122223333221    111111


Q ss_pred             ---EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925          141 ---ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (305)
Q Consensus       141 ---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  217 (305)
                         ..........|++-+.+| +||.|+.+|.||+||-- ++.-++.  .++...+|..+..+.||+++++.+ +..+.+
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~--lp~lG~pI~~iDvt~DGkwilaTc-~tyLlL  643 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTA--LPGLGDPIIGIDVTADGKWILATC-KTYLLL  643 (794)
T ss_pred             ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhc--CCCCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence               111234456777777666 69999999999999943 3322222  226678999999999999987766 556777


Q ss_pred             EEc
Q 021925          218 WDA  220 (305)
Q Consensus       218 wd~  220 (305)
                      ++.
T Consensus       644 i~t  646 (794)
T PF08553_consen  644 IDT  646 (794)
T ss_pred             EEE
Confidence            775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.01  E-value=5.3e-06  Score=71.80  Aligned_cols=147  Identities=18%  Similarity=0.231  Sum_probs=105.7

Q ss_pred             eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (305)
Q Consensus        43 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (305)
                      +..++++.|....+|++|+-+.++|+.|+..|.|+++++.+|......                                
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-------------------------------- 1139 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-------------------------------- 1139 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc--------------------------------
Confidence            445677788999999999999999999999999999999988654432                                


Q ss_pred             EEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC--CcEEEEeCCC-CcEeeeeccccCCccceEEEEE
Q 021925          123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED--AIVRIWDTET-GKLLKESDKETGHKKTITSLAK  199 (305)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~  199 (305)
                                          .+|.+.++-+.-+.+|..+++.+.-  .-..+|++.. +...+.+.       .-.++.|
T Consensus      1140 --------------------ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~-------ed~~vkF 1192 (1516)
T KOG1832|consen 1140 --------------------NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD-------EDKAVKF 1192 (1516)
T ss_pred             --------------------cccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc-------ccceeeh
Confidence                                4567777777777777766655432  3567999864 34444443       2245677


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-----eCCCeeEEEecCCCCcEE
Q 021925          200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-----TERPVNAVTMSPLLDHVC  248 (305)
Q Consensus       200 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~  248 (305)
                      +..-..-+.|+.-....+||+.++.++.++-     ....-+++.|+|+..+++
T Consensus      1193 sn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1193 SNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             hhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            7654444566666679999999998877643     222347888999987765

>smart00320 WD40 WD40 repeats

Probab=97.98  E-value=3.3e-05  Score=39.91  Aligned_cols=38  Identities=29%  Similarity=0.643  Sum_probs=33.2

Q ss_pred             ceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q 021925          137 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD  174 (305)
Q Consensus       137 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  174 (305)
                      +....+..|...+.++.|+|+++.+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34556678888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.95  E-value=0.0065  Score=49.08  Aligned_cols=183  Identities=13%  Similarity=0.145  Sum_probs=101.2

Q ss_pred             CCEEEEeeC----------CCceEEEEcCCC----eeeEEe--cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925           22 GDLLFSCAK----------DHTPTVWFADNG----ERLGTY--RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus        22 ~~~l~s~~~----------dg~v~iw~~~~~----~~~~~~--~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      .++|+.|+.          .|.|.++++.+.    ..+..+  ...+++|.+++-. ++. |+.+. .+.|.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence            467777753          288999999884    222222  2357889998877 444 44443 3789999998888


Q ss_pred             -eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE--eccCCCeeEEEEcCCCCEEE
Q 021925           86 -QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL--KGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        86 -~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~  162 (305)
                       ....-....+.........+.+++++.-     ...+.+.....     .......+  ......++++.+-++++.++
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~~~~I~vgD~-----~~sv~~~~~~~-----~~~~l~~va~d~~~~~v~~~~~l~d~~~~i  188 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVFKNYILVGDA-----MKSVSLLRYDE-----ENNKLILVARDYQPRWVTAAEFLVDEDTII  188 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEETTEEEEEES-----SSSEEEEEEET-----TTE-EEEEEEESS-BEEEEEEEE-SSSEEE
T ss_pred             cchhhheecceEEEEEEeccccEEEEEEc-----ccCEEEEEEEc-----cCCEEEEEEecCCCccEEEEEEecCCcEEE
Confidence             5555555555555555554556666643     22233332221     11112222  22345578888886667899


Q ss_pred             EeeCCCcEEEEeCCC-------Cc-EeeeeccccCCccceEEE---EEcC--CCC------EEEEEeCCCeEEEE
Q 021925          163 SAGEDAIVRIWDTET-------GK-LLKESDKETGHKKTITSL---AKAA--DGS------HFLTGSLDKSAKLW  218 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~-------~~-~~~~~~~~~~~~~~v~~~---~~~~--~~~------~l~~~~~dg~i~iw  218 (305)
                      .+..+|.+.++....       +. .+...... .....|+++   .+.|  .+.      .++.++.+|.|...
T Consensus       189 ~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  189 VGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEcCCCeEEEEEECCCCcccccccccceeEEEE-ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            999999999998763       11 11111111 234567777   5445  122      37788888888744

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.94  E-value=0.0056  Score=48.23  Aligned_cols=214  Identities=11%  Similarity=0.020  Sum_probs=117.4

Q ss_pred             CCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE-----------
Q 021925           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF-----------   88 (305)
Q Consensus        20 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~-----------   88 (305)
                      ..++.|+.|+.+| +.+++.........+. +...|..+...|+-+.|++-+ |+.+.++++..-....           
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3577899999998 8999983333222332 233499999999877776665 4999999987554433           


Q ss_pred             ----EEeeCCCceEEE---EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCC-ceEEEEeccCCCeeEEEEcCCCCE
Q 021925           89 ----TFNFDSPARSVD---FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG-ESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        89 ----~~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                          .+.....+..++   -......++++...      .+.++......  ... .....+. -...+.+++|.  ++.
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk------~i~i~~~~~~~--~~f~~~~ke~~-lp~~~~~i~~~--~~~  150 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK------KILIYEWNDPR--NSFSKLLKEIS-LPDPPSSIAFL--GNK  150 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECC------EEEEEEEECCc--ccccceeEEEE-cCCCcEEEEEe--CCE
Confidence                112222333333   11233444444332      34444443311  111 2333333 23678888888  566


Q ss_pred             EEEeeCCCcEEEEeCCCCcEeeeecccc---------CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE--EE
Q 021925          161 IISAGEDAIVRIWDTETGKLLKESDKET---------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TY  229 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~  229 (305)
                      ++.|..+ ...+.|+.++.....+....         ....++..+... ++.+|++.  |..-.+.|. .|++.+  .+
T Consensus       151 i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i  225 (275)
T PF00780_consen  151 ICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTI  225 (275)
T ss_pred             EEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEE
Confidence            7777754 47889998766544332111         112234444443 45566543  333344444 454443  44


Q ss_pred             eeCCCeeEEEecCCCCcEEEeeCCc
Q 021925          230 VTERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       230 ~~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      .-...+.++++.  .++|++-+.+.
T Consensus       226 ~W~~~p~~~~~~--~pyli~~~~~~  248 (275)
T PF00780_consen  226 QWSSAPQSVAYS--SPYLIAFSSNS  248 (275)
T ss_pred             EcCCchhEEEEE--CCEEEEECCCE
Confidence            445566777774  35777766655

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.92  E-value=0.011  Score=50.73  Aligned_cols=224  Identities=16%  Similarity=0.149  Sum_probs=119.0

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecCCCcc--eEEEEEcC--CCcEEEEEe---------CCCcEEEEecCCCCeeEE
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGA--VWCCDVSR--DSMTLITGS---------ADQTAKLWNVETGAQLFT   89 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~--v~~i~~~~--~~~~l~s~~---------~dg~v~vwd~~~~~~~~~   89 (305)
                      ..++.++.+|.|+-+|.++|+.+-++......  -..+.-+|  .+..++.++         .+|.|.-+|.++++.+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            57777888999999999999998777643221  01111122  123455553         367899999999999988


Q ss_pred             EeeCCC---------------------c-eEEEEecCCceEEEeCCcceee-------------eeeEEEEEeecccCCC
Q 021925           90 FNFDSP---------------------A-RSVDFAVGDKLAVITTDPFMEL-------------NSAIHVKRIARDPADQ  134 (305)
Q Consensus        90 ~~~~~~---------------------v-~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~  134 (305)
                      +.....                     + ...++.+.+..++++..+....             .+.+...+.      .
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~------~  264 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA------D  264 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC------C
Confidence            764211                     0 1234444444444444221000             001111111      1


Q ss_pred             CCceEEEEe--ccCC----CeeEEEEc----CCCC---EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC
Q 021925          135 GGESVLILK--GPQG----RINRAVWG----PLNR---TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA  201 (305)
Q Consensus       135 ~~~~~~~~~--~~~~----~i~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  201 (305)
                      .++..-..+  .+..    ........    -++.   .++.++.+|.+...|.++++.+......      ...++.+|
T Consensus       265 tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~  338 (488)
T cd00216         265 TGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP  338 (488)
T ss_pred             CCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC
Confidence            222222221  1100    00000000    1232   5778888999999999999988776421      11123334


Q ss_pred             CCCEEEEE------------------eCCCeEEEEEcCCceEEEEEeeC---------CCeeEEEecCCCCcEEEeeCCc
Q 021925          202 DGSHFLTG------------------SLDKSAKLWDARTLELIKTYVTE---------RPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       202 ~~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                       + .++.+                  ..+|.+.-.|+.+|+.+.+....         .+...-.....+..|++++.++
T Consensus       339 -~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG  416 (488)
T cd00216         339 -G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADG  416 (488)
T ss_pred             -c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCC
Confidence             2 23222                  24688999999999988877643         1211111123456777777777


Q ss_pred             EEEEEE
Q 021925          255 IKFMLL  260 (305)
Q Consensus       255 ~~~~~~  260 (305)
                      ....+.
T Consensus       417 ~l~ald  422 (488)
T cd00216         417 YFRAFD  422 (488)
T ss_pred             eEEEEE
Confidence            644433

The alignment model contains an 8-bladed beta-propeller.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.91  E-value=0.002  Score=41.95  Aligned_cols=98  Identities=10%  Similarity=0.174  Sum_probs=67.2

Q ss_pred             eeEEEEcC---CC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925          149 INRAVWGP---LN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       149 i~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  224 (305)
                      |+++++..   +| +.|++|+.|..|++|+-  ...+..+.    ....|++++-... ..++.+-.+|+|-+|+-  .+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~----e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT----ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe----cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cc
Confidence            44555443   33 68999999999999984  46677775    5677888887766 56899999999999975  34


Q ss_pred             EEEEEeeCCCeeEEEecCC---CC-cEEEeeCCcE
Q 021925          225 LIKTYVTERPVNAVTMSPL---LD-HVCIGEPQTI  255 (305)
Q Consensus       225 ~~~~~~~~~~v~~~~~~~~---~~-~l~~~~~~~~  255 (305)
                      .+...+....+.++++..-   |. -|++|-++|.
T Consensus        73 RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGk  107 (111)
T PF14783_consen   73 RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGK  107 (111)
T ss_pred             eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCe
Confidence            4455555555666665432   22 4777766654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.90  E-value=0.0025  Score=48.56  Aligned_cols=190  Identities=18%  Similarity=0.219  Sum_probs=113.5

Q ss_pred             EEcCCCCEEEEeeCC-----CceEEEEcCCC-eeeEEecCCCcceEEEEEcCCCcEEEEEeC------------------
Q 021925           17 KYNKDGDLLFSCAKD-----HTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSA------------------   72 (305)
Q Consensus        17 ~~~~~~~~l~s~~~d-----g~v~iw~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~------------------   72 (305)
                      .|||||++|++.-.|     |.|-|||...+ +.+..+..|.-....+.|.+||+.++.+..                  
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            589999999876433     78999998754 456778888888899999999999887643                  


Q ss_pred             CCcEEEEecCCCCeeEEEee-----CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec---
Q 021925           73 DQTAKLWNVETGAQLFTFNF-----DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG---  144 (305)
Q Consensus        73 dg~v~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  144 (305)
                      .-.+.+.|..+++.+.+...     ...++.++..+++...+.+--.....+....+...      ..+++...+..   
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~------~~g~~l~~~~~pee  273 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHF------RKGEPLEFLDLPEE  273 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeec------cCCCcCcccCCCHH
Confidence            12344555556665555443     34577788888887776653111000000000000      11122222211   


Q ss_pred             ----cCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925          145 ----PQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (305)
Q Consensus       145 ----~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  219 (305)
                          -...|-+++.+.+..+++..+- .+...+||..++..+..-...     ....++  +...-++..+.+|.+.++.
T Consensus       274 ~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~-----daaGva--~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         274 QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP-----DAAGVA--AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-----ccccce--eccCceEEecCCceEEecc
Confidence                1234667787776666665554 456779999999877654321     111222  2334466777788888774

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.86  E-value=7.6e-05  Score=40.51  Aligned_cols=42  Identities=19%  Similarity=0.170  Sum_probs=33.7

Q ss_pred             CceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee
Q 021925            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER   44 (305)
Q Consensus         2 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~   44 (305)
                      +++.-+.-...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus         3 ~~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen    3 RQLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             ceecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            33434445668999999999999999999999999988 4543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.86  E-value=0.00093  Score=54.99  Aligned_cols=155  Identities=14%  Similarity=0.131  Sum_probs=85.3

Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC-
Q 021925           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA-  132 (305)
Q Consensus        54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  132 (305)
                      .|+.+.|+++...|+++...|.|.||.....+.... ........+.+.+-           ...+....+.++..... 
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~l~di~~r~~~   70 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN-REQPPDLDYNFRRF-----------SLNNSPGKLTDISDRAPP   70 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S-------------GGGSS-SEEE-GGG--T
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc-cCCCcccCcccccc-----------cccCCCcceEEehhhCCc
Confidence            588999999988999999999999998765443320 00000001110000           00001111122221111 


Q ss_pred             --CCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc-----cCCccceEEEEEcC----
Q 021925          133 --DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-----TGHKKTITSLAKAA----  201 (305)
Q Consensus       133 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~----  201 (305)
                        .+...+...+....++|++++.|. =.+++.|.++|.+.|.|+|....+..-...     ......++++.|..    
T Consensus        71 ~~~~gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~  149 (395)
T PF08596_consen   71 SLKEGFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG  149 (395)
T ss_dssp             T-SEEEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred             ccccccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence              112345566677789999999974 458999999999999999987776653211     12345688888763    


Q ss_pred             -CC---CEEEEEeCCCeEEEEEcC
Q 021925          202 -DG---SHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       202 -~~---~~l~~~~~dg~i~iwd~~  221 (305)
                       |+   -.|++|+..|.+.+|.+.
T Consensus       150 ~D~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  150 GDGYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             CCcccceEEEEEeCCCCEEEEEEe
Confidence             33   358899999999999775

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.85  E-value=0.0072  Score=46.46  Aligned_cols=201  Identities=13%  Similarity=0.159  Sum_probs=123.7

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCC-CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      .|-...|.++.|+|+.+.|++......-.++=..+|+.+.++.-. -.....|++..++.+.++--.++.+.++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            455566999999999999999888888888877789988877521 1234667888788777777778888888776654


Q ss_pred             eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      .+......                           .+               +.............++|+|....|+.+-
T Consensus       162 ~~~~~~~~---------------------------~i---------------~L~~~~k~N~GfEGlA~d~~~~~l~~aK  199 (316)
T COG3204         162 TVISAKVQ---------------------------KI---------------PLGTTNKKNKGFEGLAWDPVDHRLFVAK  199 (316)
T ss_pred             cEEeccce---------------------------EE---------------eccccCCCCcCceeeecCCCCceEEEEE
Confidence            43322200                           00               0000111144566789999988888888


Q ss_pred             CCCcEEEEeCCCCcEeeeeccccCC-------ccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-----
Q 021925          166 EDAIVRIWDTETGKLLKESDKETGH-------KKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVTE-----  232 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----  232 (305)
                      +..-+.||........-.......+       -..|.++.|++ .+..|+-+.+++.+.-.|.. |+++..+...     
T Consensus       200 Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~g  278 (316)
T COG3204         200 ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHG  278 (316)
T ss_pred             ccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCC
Confidence            8777777766533211111100011       23467778887 45566667777777777755 5545444311     


Q ss_pred             -----CCeeEEEecCCCCcEEEe
Q 021925          233 -----RPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       233 -----~~v~~~~~~~~~~~l~~~  250 (305)
                           .....++..++|..-+++
T Consensus       279 L~~dipqaEGiamDd~g~lYIvS  301 (316)
T COG3204         279 LSSDIPQAEGIAMDDDGNLYIVS  301 (316)
T ss_pred             CcccCCCcceeEECCCCCEEEEe
Confidence                 123567777777654443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.85  E-value=0.009  Score=47.39  Aligned_cols=200  Identities=14%  Similarity=0.127  Sum_probs=111.0

Q ss_pred             EEEEEcCCCCEEEEee--CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC-CCCeeEEE
Q 021925           14 TYLKYNKDGDLLFSCA--KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE-TGAQLFTF   90 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~-~~~~~~~~   90 (305)
                      ..++++.||++++..-  -..+|.|-|+..++.+.++.- .+...-.-.- + ..+.+-+.||.+.-..+. .|+...+.
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP~~-~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYPSG-N-RGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEEEE-T-TEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEecC-C-CceEEEecCCceEEEEECCCCCEeEee
Confidence            3457788888877643  345788889998888887763 3322222222 2 357788899999999887 45544322


Q ss_pred             e-----eCCCc-eEEEEecC-CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe----------ccCCCeeEEE
Q 021925           91 N-----FDSPA-RSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK----------GPQGRINRAV  153 (305)
Q Consensus        91 ~-----~~~~v-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~  153 (305)
                      .     ...++ ..-++... +.+++.+..+.+      ...++....    .+......          -..+.-.-++
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v------~~~dlsg~~----~~~~~~~~~~t~~e~~~~WrPGG~Q~~A  244 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNV------YSADLSGDS----AKFGKPWSLLTDAEKADGWRPGGWQLIA  244 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEE------EEEEETTSS----EEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEE------EEEeccCCc----ccccCcccccCccccccCcCCcceeeee
Confidence            1     11111 22233332 344444443221      111111000    00000110          0122334467


Q ss_pred             EcCCCCEEEEee---CCC-------cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEE-eCCCeEEEEEcC
Q 021925          154 WGPLNRTIISAG---EDA-------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTG-SLDKSAKLWDAR  221 (305)
Q Consensus       154 ~~~~~~~l~~~~---~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~iwd~~  221 (305)
                      +++..+.|+..-   .+|       .|.++|+.+++.+.++.    ...++.+++.+.+.+ +|++. ..++.+.+||..
T Consensus       245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~----l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~  320 (342)
T PF06433_consen  245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP----LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA  320 (342)
T ss_dssp             EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE----EEEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred             eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe----CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence            776555444321   111       58888999999999986    456688999998766 55444 458999999999


Q ss_pred             CceEEEEEe
Q 021925          222 TLELIKTYV  230 (305)
Q Consensus       222 ~~~~~~~~~  230 (305)
                      +|+.++++.
T Consensus       321 tGk~~~~~~  329 (342)
T PF06433_consen  321 TGKLVRSIE  329 (342)
T ss_dssp             T--EEEEE-
T ss_pred             CCcEEeehh
Confidence            999999887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.84  E-value=0.0016  Score=57.69  Aligned_cols=125  Identities=14%  Similarity=0.106  Sum_probs=81.8

Q ss_pred             CCCceEEEEeccCCC-eeEEEEcC-----CCCEEEEeeCCCcEEEEeCCCCc--EeeeeccccCCccceEEEEEcCCCCE
Q 021925          134 QGGESVLILKGPQGR-INRAVWGP-----LNRTIISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSH  205 (305)
Q Consensus       134 ~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~  205 (305)
                      +.++.+.....+... |..++-..     ....-+.|-.+..+..||.|-..  .+..-...-......+|++-+.+| +
T Consensus       512 e~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~  590 (794)
T PF08553_consen  512 ERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-Y  590 (794)
T ss_pred             CCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-e
Confidence            446677777766644 44443221     12345667778899999998643  221111001244567888888777 6


Q ss_pred             EEEEeCCCeEEEEEcCCceEEE-EEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925          206 FLTGSLDKSAKLWDARTLELIK-TYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       206 l~~~~~dg~i~iwd~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                      ||+|+.+|.||+||- .++.-+ .+. .+.||..+..+.||++|++.+..-..++-.
T Consensus       591 iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  591 IAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             EEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            999999999999994 343332 233 578999999999999998877666544443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.80  E-value=0.0051  Score=53.60  Aligned_cols=212  Identities=15%  Similarity=0.108  Sum_probs=110.1

Q ss_pred             CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe------CCCcEEEEecCCCCeeEEEeeCCCceEEEEecC
Q 021925           31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS------ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG  104 (305)
Q Consensus        31 dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~  104 (305)
                      +|.+.-.+-..-.++.-..+....+.+.+++|+|+.++..-      .|+.-.+|-...+.....+..........|+|+
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspD  407 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLD  407 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCC
Confidence            66655443222222222222334678899999999887655      244444443322222233333445888999999


Q ss_pred             CceEEEeCCcce-ee-e---eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEE---EeCC
Q 021925          105 DKLAVITTDPFM-EL-N---SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI---WDTE  176 (305)
Q Consensus       105 ~~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---wd~~  176 (305)
                      +..+....+... .. .   ....++.+..    ..++...   ...+.|..+.|||||..++... +|.|++   -...
T Consensus       408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~v----d~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~  479 (591)
T PRK13616        408 ADAVWVVVDGNTVVRVIRDPATGQLARTPV----DASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE  479 (591)
T ss_pred             CCceEEEecCcceEEEeccCCCceEEEEec----cCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC
Confidence            887777654311 00 0   1111111111    0111111   2356799999999999888765 477777   4433


Q ss_pred             CCcEeeeec---cc-cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC-CceEEEEEe---eCCCeeEEEecCCCCcEE
Q 021925          177 TGKLLKESD---KE-TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TLELIKTYV---TERPVNAVTMSPLLDHVC  248 (305)
Q Consensus       177 ~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~---~~~~v~~~~~~~~~~~l~  248 (305)
                      .+.  ..+.   .. ......+.++.|.+++.++ ++..++...+|.+. .|.....+.   ...++.+++-+++  .++
T Consensus       480 ~G~--~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iy  554 (591)
T PRK13616        480 DGQ--YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVY  554 (591)
T ss_pred             CCc--eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEE
Confidence            443  1121   01 1223346889999998854 55555544455433 122222212   2455677777763  455


Q ss_pred             EeeCCcE
Q 021925          249 IGEPQTI  255 (305)
Q Consensus       249 ~~~~~~~  255 (305)
                      ++..++.
T Consensus       555 v~~~~g~  561 (591)
T PRK13616        555 VTDARAV  561 (591)
T ss_pred             EEcCCce
Confidence            5555553

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.79  E-value=0.015  Score=48.50  Aligned_cols=70  Identities=16%  Similarity=0.143  Sum_probs=49.3

Q ss_pred             CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  219 (305)
                      .+++..++.||+++++|.-..+|.+.+.+..-.+....+..  ........|.|+-+...++.-  +..+.+..
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~--~~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT--DSKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec--CcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            46899999999999999999999999998776666655542  234566788887664333322  34455555

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.0011  Score=54.73  Aligned_cols=149  Identities=18%  Similarity=0.241  Sum_probs=94.1

Q ss_pred             CCcEE-EEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee--eeeEEEEEeecccCCCCCceE
Q 021925           63 DSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL--NSAIHVKRIARDPADQGGESV  139 (305)
Q Consensus        63 ~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  139 (305)
                      +.++| .++.....|+-.|++.|+.+..+.....|.-+.+.|+.+..-........-  +..+..++.+.    +....+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv----~~~~kl  419 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV----QGKNKL  419 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccc----cCccee
Confidence            34444 455556778899999999999999888888888888765443333322211  22223333321    111122


Q ss_pred             EEEeccC----CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEee-eeccccCCccceEEEEEcCCCCEEEEEeCCCe
Q 021925          140 LILKGPQ----GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKS  214 (305)
Q Consensus       140 ~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  214 (305)
                      ...++|+    ....|.+-..+| +++.|+.+|.|++||. .+..-+ .++   +...+|..+..+.+|++|+..+ +..
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlP---gLG~~I~hVdvtadGKwil~Tc-~ty  493 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALP---GLGDAIKHVDVTADGKWILATC-KTY  493 (644)
T ss_pred             eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccc---ccCCceeeEEeeccCcEEEEec-ccE
Confidence            2333332    234455544444 7999999999999997 443333 333   7788999999999999877665 666


Q ss_pred             EEEEEcC
Q 021925          215 AKLWDAR  221 (305)
Q Consensus       215 i~iwd~~  221 (305)
                      +.+.++.
T Consensus       494 LlLi~t~  500 (644)
T KOG2395|consen  494 LLLIDTL  500 (644)
T ss_pred             EEEEEEe
Confidence            7776653

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.55  E-value=0.028  Score=46.11  Aligned_cols=187  Identities=13%  Similarity=0.105  Sum_probs=86.0

Q ss_pred             EcCCCCEEEEee--C----CCceEEEEcCCCeeeEEecCC---CcceEEEEEcCCCcEEEEEeC----------------
Q 021925           18 YNKDGDLLFSCA--K----DHTPTVWFADNGERLGTYRGH---NGAVWCCDVSRDSMTLITGSA----------------   72 (305)
Q Consensus        18 ~~~~~~~l~s~~--~----dg~v~iw~~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~s~~~----------------   72 (305)
                      .-|+|+.++++-  .    -|-+.+.|-++.+........   ...-..+.|.|..+.++|...                
T Consensus       137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~  216 (461)
T PF05694_consen  137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE  216 (461)
T ss_dssp             E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred             ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence            347888888752  2    256778887777777666532   223466778887778887532                


Q ss_pred             ----CCcEEEEecCCCCeeEEEeeCC---CceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccC-CCCCceEEEE
Q 021925           73 ----DQTAKLWNVETGAQLFTFNFDS---PARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPA-DQGGESVLIL  142 (305)
Q Consensus        73 ----dg~v~vwd~~~~~~~~~~~~~~---~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  142 (305)
                          ..++.+||+.+.+.++++....   .+..+.|..+  ...-+++..      ....+|.+.+... ....+.+..+
T Consensus       217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a------Lss~i~~~~k~~~g~W~a~kVi~i  290 (461)
T PF05694_consen  217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA------LSSSIWRFYKDDDGEWAAEKVIDI  290 (461)
T ss_dssp             HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--------EEEEEEEE-ETTEEEEEEEEEE
T ss_pred             cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe------ccceEEEEEEcCCCCeeeeEEEEC
Confidence                3679999999999999998653   3556666543  444443331      1122222222110 0001111111


Q ss_pred             e-----------------ccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCc---Eeeeeccc-------------c
Q 021925          143 K-----------------GPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGK---LLKESDKE-------------T  188 (305)
Q Consensus       143 ~-----------------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~---~~~~~~~~-------------~  188 (305)
                      .                 .-..-|+.+..|.|.++|..++ .+|.|+.||+....   .+.++..-             .
T Consensus       291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~  370 (461)
T PF05694_consen  291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGK  370 (461)
T ss_dssp             --EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS---
T ss_pred             CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccc
Confidence            1                 1134579999999999998776 58999999998643   22222100             0


Q ss_pred             CCccceEEEEEcCCCCEEEEEe
Q 021925          189 GHKKTITSLAKAADGSHFLTGS  210 (305)
Q Consensus       189 ~~~~~v~~~~~~~~~~~l~~~~  210 (305)
                      ...+...-+..|.||+.|...+
T Consensus       371 ~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  371 RLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ---S----EEE-TTSSEEEEE-
T ss_pred             ccCCCCCeEEEccCCeEEEEEe
Confidence            1122346677888888776554

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.00074  Score=60.25  Aligned_cols=95  Identities=20%  Similarity=0.257  Sum_probs=69.8

Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN  236 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~  236 (305)
                      +..++.|+..|.+-..|+...  +..+.......++|++++|+.+|..++.|-.+|.|.+||+..+++++.+. ++.+..
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            456888998999999998753  22122222456899999999999999999999999999999999998887 555554


Q ss_pred             EE---EecCCCCcEEEeeCCc
Q 021925          237 AV---TMSPLLDHVCIGEPQT  254 (305)
Q Consensus       237 ~~---~~~~~~~~l~~~~~~~  254 (305)
                      .+   .+..++..++++...|
T Consensus       177 ~vi~v~~t~~nS~llt~D~~G  197 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGG  197 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCC
Confidence            44   4455555555554444

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.52  E-value=0.00045  Score=37.50  Aligned_cols=35  Identities=6%  Similarity=0.076  Sum_probs=30.8

Q ss_pred             CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE
Q 021925          190 HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (305)
Q Consensus       190 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  225 (305)
                      ....|..++|+|...+||.++.+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            4567999999999999999999999999998 5554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.0029  Score=56.74  Aligned_cols=70  Identities=24%  Similarity=0.428  Sum_probs=56.4

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEE---EcCCCcEEEEEeCCCcEEEEec
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD---VSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~---~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      .++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..|..+.+++-   +..++..++++..-|.  +|.+
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            57899999999999999999999999999999999988887766555443   3445567888877776  6654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.39  E-value=0.063  Score=45.17  Aligned_cols=195  Identities=13%  Similarity=0.059  Sum_probs=100.7

Q ss_pred             ceEEEEEcCCCcEEEEE-eCCC----cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee------eeeE
Q 021925           54 AVWCCDVSRDSMTLITG-SADQ----TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL------NSAI  122 (305)
Q Consensus        54 ~v~~i~~~~~~~~l~s~-~~dg----~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~  122 (305)
                      .+....++|++++++.+ +..|    .+++.|+++++.+...-.......+.|.+++..++....+....      ...+
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            34467899999988754 3334    49999999997765432222333499999987766654322211      3333


Q ss_pred             EEEEeecccCCCCCceEEEEeccCCC--eeEEEEcCCCCEEEEeeC---C-CcEEEEeCCCC----cEeeeeccccCCcc
Q 021925          123 HVKRIARDPADQGGESVLILKGPQGR--INRAVWGPLNRTIISAGE---D-AIVRIWDTETG----KLLKESDKETGHKK  192 (305)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~~~  192 (305)
                      ..+.+....    .+....+......  ...+..++++++++....   + ..+++.|+..+    .....+..  ...+
T Consensus       205 ~~~~~gt~~----~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~--~~~~  278 (414)
T PF02897_consen  205 YRHKLGTPQ----SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP--REDG  278 (414)
T ss_dssp             EEEETTS-G----GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE--SSSS
T ss_pred             EEEECCCCh----HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC--CCCc
Confidence            333332211    1223444444433  567889999998775432   3 46888898874    22233321  1222


Q ss_pred             ceEEEEEcCCCCEEEEEe---CCCeEEEEEcCCceE---EEEE-eeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          193 TITSLAKAADGSHFLTGS---LDKSAKLWDARTLEL---IKTY-VTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       193 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ....+... ++.+++...   ..+.|.-.++.+...   ...+ .+...+.-..+...+++|++....+.
T Consensus       279 ~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~  347 (414)
T PF02897_consen  279 VEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG  347 (414)
T ss_dssp             -EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred             eEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence            22333333 444444332   246777778776652   2122 24443333344445556666544443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.37  E-value=0.081  Score=45.85  Aligned_cols=76  Identities=25%  Similarity=0.276  Sum_probs=49.6

Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE--EEecCCC
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPLL  244 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~  244 (305)
                      -|.|.-+|+.+++.....+.........  +.  -.+..++.++.||.++.+|.++|+.+.+++....+..  +.+.-+|
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~--l~--t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G  515 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDFPLWGGV--LA--TAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDG  515 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCCCCCCcc--eE--ECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCC
Confidence            3678889999998887765321111111  12  2445777788899999999999999999885544433  2223455


Q ss_pred             Cc
Q 021925          245 DH  246 (305)
Q Consensus       245 ~~  246 (305)
                      +.
T Consensus       516 ~q  517 (527)
T TIGR03075       516 KQ  517 (527)
T ss_pred             EE
Confidence            43

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.35  E-value=0.065  Score=44.42  Aligned_cols=89  Identities=10%  Similarity=0.078  Sum_probs=58.1

Q ss_pred             EeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCc-cceEEEEEcC--------------CCCEE
Q 021925          142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK-KTITSLAKAA--------------DGSHF  206 (305)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~--------------~~~~l  206 (305)
                      +......+.+++.+|++++.++...=|.|.++|+.++..++.++....-. +.+....-..              ...+|
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            33445668899999999988887777999999999988777665321100 0111100000              01123


Q ss_pred             -EEEeCCCeEEEEEcCCceEEEEEe
Q 021925          207 -LTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       207 -~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                       +-+-.-|.|.||+++.|..+..+.
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEE
Confidence             345568899999999998887776

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.036  Score=46.27  Aligned_cols=125  Identities=17%  Similarity=0.114  Sum_probs=79.4

Q ss_pred             CCCceEEEEeccCCCeeEEEEcCCCCE-------EEEeeCCCcEEEEeCCCCcE--eeeec--cccCCccceEEEEEcCC
Q 021925          134 QGGESVLILKGPQGRINRAVWGPLNRT-------IISAGEDAIVRIWDTETGKL--LKESD--KETGHKKTITSLAKAAD  202 (305)
Q Consensus       134 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-------l~~~~~dg~i~iwd~~~~~~--~~~~~--~~~~~~~~v~~~~~~~~  202 (305)
                      +.++.+...+-+.. |+-+.+.|+.+.       =+.|-.|..|.-||.+-...  +...+  .. .......|.+-..+
T Consensus       364 E~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy-~~k~nFsc~aTT~s  441 (644)
T KOG2395|consen  364 ERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY-STKNNFSCFATTES  441 (644)
T ss_pred             ccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc-ccccccceeeecCC
Confidence            34566666666655 777777776531       23455678899999984322  11111  00 12234555555555


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceEEEE-Ee-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925          203 GSHFLTGSLDKSAKLWDARTLELIKT-YV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL  263 (305)
Q Consensus       203 ~~~l~~~~~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (305)
                      | ++++||.+|.|++||- .+..-++ +. .+.+|..+..+.+|++|++.+..- .+...+.+
T Consensus       442 G-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty-LlLi~t~~  501 (644)
T KOG2395|consen  442 G-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY-LLLIDTLI  501 (644)
T ss_pred             c-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccE-EEEEEEec
Confidence            5 7999999999999996 5544443 33 678999999999999988765544 33333433

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.26  E-value=0.049  Score=47.59  Aligned_cols=234  Identities=13%  Similarity=0.072  Sum_probs=113.8

Q ss_pred             CCCCEEEEeeCCC------ceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCC------CcEEEEecCCCCe
Q 021925           20 KDGDLLFSCAKDH------TPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGAQ   86 (305)
Q Consensus        20 ~~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~d------g~v~vwd~~~~~~   86 (305)
                      ..+..++.||.++      .+..+|..+++......- ....-.+++.. ++...++||.|      .++..||..+++=
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            3456777787763      677888877743322211 22233445554 45677888888      3466778777662


Q ss_pred             eEEEeeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           87 LFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        87 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      ...-.....-....... +|.+.++++.........+..++.....    ...+..+.......  -...-+|+..++|+
T Consensus       362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~----W~~va~m~~~r~~~--gv~~~~g~iYi~GG  435 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK----WTPVAPMLTRRSGH--GVAVLGGKLYIIGG  435 (571)
T ss_pred             eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc----ccccCCCCcceeee--EEEEECCEEEEEcC
Confidence            22111222222222222 4555555544333333333333332211    11111111111111  11222466677777


Q ss_pred             CCC------cEEEEeCCCCcEee--eeccccCCccceEEEEEcCCCCEEEEEeCCCe-----EEEEEcCCceEEEEEeeC
Q 021925          166 EDA------IVRIWDTETGKLLK--ESDKETGHKKTITSLAKAADGSHFLTGSLDKS-----AKLWDARTLELIKTYVTE  232 (305)
Q Consensus       166 ~dg------~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~  232 (305)
                      .++      .+..||..+++-..  .+..   ...... ++. -++.+.+.|+.|+.     |..||..+.+-...-...
T Consensus       436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~---~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~  510 (571)
T KOG4441|consen  436 GDGSSNCLNSVECYDPETNTWTLIAPMNT---RRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT  510 (571)
T ss_pred             cCCCccccceEEEEcCCCCceeecCCccc---ccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence            543      57888888765432  2221   111122 222 25778888888773     777888766544432222


Q ss_pred             CCeeEEEe-cCCCCcEEEeeCCcEEEEEEeehhh
Q 021925          233 RPVNAVTM-SPLLDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       233 ~~v~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                      .+...+.. .-+++..++|+.++......+..++
T Consensus       511 ~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~yd  544 (571)
T KOG4441|consen  511 SPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYD  544 (571)
T ss_pred             cccccccEEEECCEEEEEecccCccccceeEEcC
Confidence            22222222 2345566777777765555555443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.22  E-value=0.12  Score=44.82  Aligned_cols=67  Identities=15%  Similarity=0.135  Sum_probs=44.7

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecC--CCc--ceEE-EEEcCCCcEEEEEe------CCCcEEEEecCCCCeeEEEe
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRG--HNG--AVWC-CDVSRDSMTLITGS------ADQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~--~v~~-i~~~~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~   91 (305)
                      ..++.++.|+.+.-.|.++|+.+.....  +..  .+.+ .... ++ .++.+.      .+|.|.-+|.++|+.+..+.
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            4567778899999999999998876542  111  1111 1111 44 444443      26899999999999988766

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.15  E-value=0.1  Score=43.11  Aligned_cols=110  Identities=10%  Similarity=0.046  Sum_probs=60.6

Q ss_pred             EEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEE-eCCCC-----cE--e-eeeccc-cCCccceEEEEEcCCCCEEEEE
Q 021925          140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW-DTETG-----KL--L-KESDKE-TGHKKTITSLAKAADGSHFLTG  209 (305)
Q Consensus       140 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~-----~~--~-~~~~~~-~~~~~~v~~~~~~~~~~~l~~~  209 (305)
                      ..+.........+++.+++ .+ .++.. .|..+ |....     +.  + ..+... ..+......++|.|||.+.++-
T Consensus        65 ~vfa~~l~~p~Gi~~~~~G-ly-V~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~  141 (367)
T TIGR02604        65 NVFAEELSMVTGLAVAVGG-VY-VATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNH  141 (367)
T ss_pred             EEeecCCCCccceeEecCC-EE-EeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEec
Confidence            3444444456889999888 44 44444 44444 54321     11  1 112211 0123457789999999876654


Q ss_pred             eCC-------------------CeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCC
Q 021925          210 SLD-------------------KSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       210 ~~d-------------------g~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~  253 (305)
                      +..                   |.|.-+|..+++. ..+. .......++|+|+|+++++-..+
T Consensus       142 G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       142 GNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence            421                   4466666654443 2333 23345789999999887764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.15  E-value=0.062  Score=40.11  Aligned_cols=220  Identities=10%  Similarity=0.058  Sum_probs=116.0

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeeeE-EecCCCcceEEEEEcC-CC--cEEEEEeCCCcEEEEecC--CCCeeEEEe----
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSR-DS--MTLITGSADQTAKLWNVE--TGAQLFTFN----   91 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~v~~i~~~~-~~--~~l~s~~~dg~v~vwd~~--~~~~~~~~~----   91 (305)
                      +.++..--..|.|.-||..+++..+ ++++.  ++.++.+-- ++  .+.+.++..=.+--||..  ......++.    
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            3344444456777778887655332 23321  133333311 22  233333333334456632  222222211    


Q ss_pred             --eCCCceEEEEecCCceEEEeCCcceeee----eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE-Ee
Q 021925           92 --FDSPARSVDFAVGDKLAVITTDPFMELN----SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SA  164 (305)
Q Consensus        92 --~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~  164 (305)
                        .......-..+|+|++............    +.+..|..        ...+..+...-+--+.++|+.+.+.+. +-
T Consensus       105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--------~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD  176 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--------GHQVELIWNCVGISNGLAWDSDAKKFYYID  176 (310)
T ss_pred             hHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--------CCCceeeehhccCCccccccccCcEEEEEc
Confidence              2344556678899998655443221111    11111111        122222333334456788988876655 44


Q ss_pred             eCCCcEEEEe--CCCCcE-----eeeeccccC-CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCe
Q 021925          165 GEDAIVRIWD--TETGKL-----LKESDKETG-HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV  235 (305)
Q Consensus       165 ~~dg~i~iwd--~~~~~~-----~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v  235 (305)
                      +.+-.|.-||  ..+|..     +..++.... .....-.++...+|++.++.-..++|...|..+|+.+.++. ....+
T Consensus       177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi  256 (310)
T KOG4499|consen  177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI  256 (310)
T ss_pred             cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence            5567787777  555432     222221111 11122345567788888888888999999999999999998 56679


Q ss_pred             eEEEec-CCCCcEEEee
Q 021925          236 NAVTMS-PLLDHVCIGE  251 (305)
Q Consensus       236 ~~~~~~-~~~~~l~~~~  251 (305)
                      +|++|- |+-..+.+..
T Consensus       257 tsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  257 TSCCFGGKNLDILYVTT  273 (310)
T ss_pred             EEEEecCCCccEEEEEe
Confidence            999996 4444555443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.14  E-value=0.084  Score=41.60  Aligned_cols=204  Identities=14%  Similarity=0.097  Sum_probs=107.1

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEe--------------cCCCcceEEEE--EcCCC-cEEEEEeCC
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--------------RGHNGAVWCCD--VSRDS-MTLITGSAD   73 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~--------------~~~~~~v~~i~--~~~~~-~~l~s~~~d   73 (305)
                      .+|..+...|+-+.+++-+ |+.+.++++........-              ......+...+  -...+ ..|+.+ ..
T Consensus        36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~k  113 (275)
T PF00780_consen   36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VK  113 (275)
T ss_pred             ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-EC
Confidence            3488999999877777654 699999998764433311              11223444444  11233 344444 44


Q ss_pred             CcEEEEecCCC-----CeeEEEeeCCCceEEEEecCCceEEEe-CCcceeeeee-EEEEEeecccCCCCCceEEEEeccC
Q 021925           74 QTAKLWNVETG-----AQLFTFNFDSPARSVDFAVGDKLAVIT-TDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQ  146 (305)
Q Consensus        74 g~v~vwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  146 (305)
                      ++|.+|.....     +....+..+..+..++|.  +..++++ .+....++-. .....+......  ...........
T Consensus       114 k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~--~~~~~~~~~~~  189 (275)
T PF00780_consen  114 KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDS--SSSFKSRNSSS  189 (275)
T ss_pred             CEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCC--cchhhhcccCC
Confidence            68999987653     566777899999999999  3344443 3322222211 111111100000  00000001111


Q ss_pred             CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEee--eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  224 (305)
                      .++..+. -+++.+|++-  |..-.+.|. .|++.+  .+.    -...+.++++.  ..+|+..+. +.|.||++.+++
T Consensus       190 ~~~~~~~-~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~----W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~  258 (275)
T PF00780_consen  190 KPLGIFQ-LSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ----WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGE  258 (275)
T ss_pred             CceEEEE-eCCceEEEEe--cceEEEEcC-CCCcCcccEEE----cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCc
Confidence            2222233 3344555543  333344454 344433  222    23355566664  347776665 559999999999


Q ss_pred             EEEEEee
Q 021925          225 LIKTYVT  231 (305)
Q Consensus       225 ~~~~~~~  231 (305)
                      .++.+..
T Consensus       259 lvQ~i~~  265 (275)
T PF00780_consen  259 LVQTIPL  265 (275)
T ss_pred             EEEEEEC
Confidence            9888863

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.074  Score=46.44  Aligned_cols=166  Identities=13%  Similarity=0.124  Sum_probs=95.4

Q ss_pred             ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-----eCCCceEEEEecCCce
Q 021925           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-----FDSPARSVDFAVGDKL  107 (305)
Q Consensus        33 ~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~  107 (305)
                      .|+|++. +|+.+.++.-..+.+-.+.|+.+. .|++...||++.++++- |+.+....     ....|..+.+..+|-.
T Consensus        65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             eEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceE
Confidence            4777775 477776665555588999999765 66777899999999975 33222211     2334555555556655


Q ss_pred             EEEeCCcceeeeeeEEE-----------------EEeecccC-------------------CCCCceEEEEeccCCCeeE
Q 021925          108 AVITTDPFMELNSAIHV-----------------KRIARDPA-------------------DQGGESVLILKGPQGRINR  151 (305)
Q Consensus       108 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~-------------------~~~~~~~~~~~~~~~~i~~  151 (305)
                      +...++......+....                 |.......                   .........+....+.+..
T Consensus       142 vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~k  221 (829)
T KOG2280|consen  142 VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVK  221 (829)
T ss_pred             EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEE
Confidence            55555433333222111                 11100000                   0000111112222356778


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC
Q 021925          152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG  203 (305)
Q Consensus       152 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  203 (305)
                      +..||+.++|+.=..+|.|.+-+....+....+...  ...+...++|..+.
T Consensus       222 i~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~--~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  222 ISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT--DHDPPKQMAWCGND  271 (829)
T ss_pred             EEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC--CCCchHhceeecCC
Confidence            899999999999999999999988877766555421  12223366676544

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=97.11  E-value=0.011  Score=48.94  Aligned_cols=150  Identities=17%  Similarity=0.217  Sum_probs=86.6

Q ss_pred             CCcEEE-EEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE
Q 021925           63 DSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (305)
Q Consensus        63 ~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (305)
                      +.++|+ .++....++-.|++.|+.+..+.....+ -+.|.|..++.-....+.+.-...-.+..+....  .. ..+..
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~--~g-NKi~v  553 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRA--RG-NKIKV  553 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccc--cC-Cceee
Confidence            444444 4555667888899999999999877777 7778875543333222222111111222221111  11 11111


Q ss_pred             EeccCCCeeEEEEc----CCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925          142 LKGPQGRINRAVWG----PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (305)
Q Consensus       142 ~~~~~~~i~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  217 (305)
                      . ......+.-.|+    ....++|.++..|.|++||.-..+....++   +....|..+..+.+|+++++.+ ...+.+
T Consensus       554 ~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP---~lG~aIk~idvta~Gk~ilaTC-k~yllL  628 (776)
T COG5167         554 V-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP---GLGDAIKHIDVTANGKHILATC-KNYLLL  628 (776)
T ss_pred             e-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc---ccccceeeeEeecCCcEEEEee-cceEEE
Confidence            1 111112222222    234589999999999999965443333344   6678899999999999887766 456777


Q ss_pred             EEcC
Q 021925          218 WDAR  221 (305)
Q Consensus       218 wd~~  221 (305)
                      -|++
T Consensus       629 ~d~~  632 (776)
T COG5167         629 TDVP  632 (776)
T ss_pred             Eecc
Confidence            7764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.08  E-value=0.091  Score=40.82  Aligned_cols=152  Identities=16%  Similarity=0.046  Sum_probs=85.0

Q ss_pred             ceEEEEEcCCCcEEEEEe-CCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC
Q 021925           54 AVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA  132 (305)
Q Consensus        54 ~v~~i~~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (305)
                      .+.+.+++++++.++... .++.-.+|-...+................|.+++..............     ..   ...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~-----~~---~~~   96 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRV-----VR---DSA   96 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEE-----EE---ecC
Confidence            689999999998877655 233344444444444444434557788889999776666543211111     10   000


Q ss_pred             CCCCceEEEEeccC-CCeeEEEEcCCCCEEEEee---CCCcEEEEeCCC---CcEe---eeeccccCCccceEEEEEcCC
Q 021925          133 DQGGESVLILKGPQ-GRINRAVWGPLNRTIISAG---EDAIVRIWDTET---GKLL---KESDKETGHKKTITSLAKAAD  202 (305)
Q Consensus       133 ~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~---~~~~---~~~~~~~~~~~~v~~~~~~~~  202 (305)
                      .........-.... ..|..+.+||||..++...   .++.|.+=-+..   +.+.   ............++.+.|.++
T Consensus        97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen   97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            01111111111111 2899999999998877655   357777765432   2011   111111133568899999999


Q ss_pred             CCEEEEEeCCC
Q 021925          203 GSHFLTGSLDK  213 (305)
Q Consensus       203 ~~~l~~~~~dg  213 (305)
                      +.+++.+...+
T Consensus       177 ~~L~V~~~~~~  187 (253)
T PF10647_consen  177 STLVVLGRSAG  187 (253)
T ss_pred             CEEEEEeCCCC
Confidence            98776665543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.07  E-value=0.081  Score=44.98  Aligned_cols=148  Identities=15%  Similarity=0.256  Sum_probs=87.3

Q ss_pred             cceEEEEEcCCCCEE-EEee--CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC----CcEEEEEeCCCcEEEEecC-
Q 021925           11 RPLTYLKYNKDGDLL-FSCA--KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD----SMTLITGSADQTAKLWNVE-   82 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l-~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~l~s~~~dg~v~vwd~~-   82 (305)
                      .+|..++|. ||+.+ +|.-  .+|.++.=|   .+.+..|    +.|.++.|.|-    ...|+.......|.||.+. 
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            478889997 55544 4432  234433322   2233333    46899999983    3345555566899999875 


Q ss_pred             ----CCCeeEE----Ee--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925           83 ----TGAQLFT----FN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (305)
Q Consensus        83 ----~~~~~~~----~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (305)
                          +++.+..    +.  .+--...+.|+|....+++-+.....+...++..          ...+..--...+.|.|.
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d----------~srVkaDi~~~G~IhCA  161 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCD----------SSRVKADIKTSGLIHCA  161 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeC----------CceEEEeccCCceEEEE
Confidence                2222222    21  2334567889999998888765444333333221          12222223567889999


Q ss_pred             EEcCCCCEEEEee-CCCcEEEEeCC
Q 021925          153 VWGPLNRTIISAG-EDAIVRIWDTE  176 (305)
Q Consensus       153 ~~~~~~~~l~~~~-~dg~i~iwd~~  176 (305)
                      +|.+||+.|+.+- ..=.-++||-.
T Consensus       162 CWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  162 CWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EecCcCCEEEEEeCCeEEEEEecCc
Confidence            9999998777553 23356788854

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.01  E-value=0.1  Score=40.23  Aligned_cols=214  Identities=13%  Similarity=0.065  Sum_probs=130.5

Q ss_pred             CCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCc-EEEEecCCCCeeEEEeeCC---CceEEEEecCCceEEEeCCcc
Q 021925           41 NGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQT-AKLWNVETGAQLFTFNFDS---PARSVDFAVGDKLAVITTDPF  115 (305)
Q Consensus        41 ~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~  115 (305)
                      .|+.+.... -...-..|+|+|.. .-++.+-.-|+ ..++|....+....+....   ---.=.|+|+|.++....++.
T Consensus        57 aGk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf  135 (366)
T COG3490          57 AGKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF  135 (366)
T ss_pred             CCceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence            345444332 23344567888844 45566655555 5678988887766655221   222446899999999988776


Q ss_pred             eeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC------------------CCcEEEEeCCC
Q 021925          116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE------------------DAIVRIWDTET  177 (305)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~  177 (305)
                      ....+.+.+++...     ....+-.+..|.-....+.+.+||+.++.+..                  .-.+.+.|..+
T Consensus       136 d~~rGViGvYd~r~-----~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at  210 (366)
T COG3490         136 DPNRGVIGVYDARE-----GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT  210 (366)
T ss_pred             CCCCceEEEEeccc-----ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence            66666666776652     23445556677777788999999998887642                  11344555555


Q ss_pred             CcEeeeeccc-cCCccceEEEEEcCCCCEEEEEeCCCe-----EEEEEcCCceEEEEEee--------CCCeeEEEecCC
Q 021925          178 GKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSLDKS-----AKLWDARTLELIKTYVT--------ERPVNAVTMSPL  243 (305)
Q Consensus       178 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~  243 (305)
                      ++.+.+.... .-+.-.+..++..+||..++.+-..|.     -.+=-...++++.-+..        ...|-+++.+.+
T Consensus       211 G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~  290 (366)
T COG3490         211 GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRR  290 (366)
T ss_pred             cchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeeccc
Confidence            6555443321 124456888888888876665544331     11222234555544432        234678888888


Q ss_pred             CCcEEEeeCCcEEEEEE
Q 021925          244 LDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       244 ~~~l~~~~~~~~~~~~~  260 (305)
                      ..+++..+..++..+.|
T Consensus       291 ~glV~lTSP~GN~~vi~  307 (366)
T COG3490         291 DGLVALTSPRGNRAVIW  307 (366)
T ss_pred             CCeEEEecCCCCeEEEE
Confidence            88888888888774443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.92  E-value=0.15  Score=40.68  Aligned_cols=169  Identities=16%  Similarity=0.112  Sum_probs=95.6

Q ss_pred             ceEEEEcCCCeeeEEec----C-CCcceEEEEEcCCCcEEEEEeC------C---CcEEEEecC-CCCeeEEEee-CCCc
Q 021925           33 TPTVWFADNGERLGTYR----G-HNGAVWCCDVSRDSMTLITGSA------D---QTAKLWNVE-TGAQLFTFNF-DSPA   96 (305)
Q Consensus        33 ~v~iw~~~~~~~~~~~~----~-~~~~v~~i~~~~~~~~l~s~~~------d---g~v~vwd~~-~~~~~~~~~~-~~~v   96 (305)
                      -+.+++.+++..+..+.    + -....+.+...|+|.+-++...      +   ..=.+|-+. .+..+..... -...
T Consensus        86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~  165 (307)
T COG3386          86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP  165 (307)
T ss_pred             ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence            45666766555432222    1 1235577888999876554333      0   111344444 4444444443 4566


Q ss_pred             eEEEEecCCceEEEeCCcceeeeeeEEEEEeecc-cCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC-cEEEEe
Q 021925           97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD-PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA-IVRIWD  174 (305)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd  174 (305)
                      +.++|+|+++.++.+....    ..+........ ................+..-.++...+|.+.+++..+| .|.+|+
T Consensus       166 NGla~SpDg~tly~aDT~~----~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~  241 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPA----NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN  241 (307)
T ss_pred             CceEECCCCCEEEEEeCCC----CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence            7899999998888776421    12222222210 11111122333334567777788888888776555554 999999


Q ss_pred             CCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEE
Q 021925          175 TETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTG  209 (305)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  209 (305)
                      .. ++.+..+..   ....+++++|-- +.+.|+..
T Consensus       242 pd-G~l~~~i~l---P~~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         242 PD-GKLLGEIKL---PVKRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             CC-CcEEEEEEC---CCCCCccceEeCCCcCEEEEE
Confidence            98 888888873   336777777753 44444433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.90  E-value=0.13  Score=39.60  Aligned_cols=181  Identities=13%  Similarity=0.064  Sum_probs=110.3

Q ss_pred             eEEEEEcCCCCEEEEeeCCC--ceEEEEcCCCeeeEEecCCC-cceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925           13 LTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~   89 (305)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.+++......-.. ---..+....| +...-.=.++...+||..+.+.+.+
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEEE
Confidence            45677877887878877766  78999999998776554222 12234444433 3334445688999999998888777


Q ss_pred             EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (305)
Q Consensus        90 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  169 (305)
                      +..+..-..                                                     ++  .+++.|+.......
T Consensus       126 ~~y~~EGWG-----------------------------------------------------Lt--~dg~~Li~SDGS~~  150 (264)
T PF05096_consen  126 FPYPGEGWG-----------------------------------------------------LT--SDGKRLIMSDGSSR  150 (264)
T ss_dssp             EE-SSS--E-----------------------------------------------------EE--ECSSCEEEE-SSSE
T ss_pred             EecCCcceE-----------------------------------------------------EE--cCCCEEEEECCccc
Confidence            653332222                                                     22  23555665555678


Q ss_pred             EEEEeCCCCcEeeeeccccC--CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-----e-----------
Q 021925          170 VRIWDTETGKLLKESDKETG--HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-----T-----------  231 (305)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~-----------  231 (305)
                      ++++|..+.+..+.+.....  .-..++.+.+- +|...|=.=....|...|..+|+.+..+.     .           
T Consensus       151 L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~  229 (264)
T PF05096_consen  151 LYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPD  229 (264)
T ss_dssp             EEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--T
T ss_pred             eEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhccccccccccc
Confidence            88888887777666653211  12345666665 56666655567788889999999888764     0           


Q ss_pred             CCCeeEEEecCCCCcEEEe
Q 021925          232 ERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       232 ~~~v~~~~~~~~~~~l~~~  250 (305)
                      ..-.+.+|++|..+.+.+.
T Consensus       230 ~dVLNGIAyd~~~~~l~vT  248 (264)
T PF05096_consen  230 DDVLNGIAYDPETDRLFVT  248 (264)
T ss_dssp             TS-EEEEEEETTTTEEEEE
T ss_pred             CCeeEeEeEeCCCCEEEEE
Confidence            1236899998887665554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.83  E-value=0.16  Score=39.52  Aligned_cols=154  Identities=8%  Similarity=0.096  Sum_probs=90.9

Q ss_pred             ceEEEEEcCCCCEEEEee-CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe-cCCCCee-E
Q 021925           12 PLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN-VETGAQL-F   88 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd-~~~~~~~-~   88 (305)
                      .+.+.+.+++|+.+|... .++.-.+|-...+....... ....+....|++++...+....+...+++. ..+++.. .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            688999999999887765 23333444333333333332 223788889999987776666666677774 2333222 2


Q ss_pred             EEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC---CCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           89 TFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD---QGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        89 ~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      ...   ....|..+.++|+|..++.......  ...+.+..+.+....   ....+..........+..+.|.+++.+++
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~--~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGG--GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCC--CCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            222   1228999999999998887652111  123333333333222   11122333334456889999999998777


Q ss_pred             EeeCCC
Q 021925          163 SAGEDA  168 (305)
Q Consensus       163 ~~~~dg  168 (305)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            665533

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.78  E-value=0.0041  Score=45.87  Aligned_cols=62  Identities=16%  Similarity=0.207  Sum_probs=37.6

Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCc-cceEEEEEcCCCCEEEEE--eCCCeEEEEEcC
Q 021925          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK-KTITSLAKAADGSHFLTG--SLDKSAKLWDAR  221 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~  221 (305)
                      ++.+..+++.||.|+.|++.-.+.+....   .|. .++.....+..+++++.+  |.|..++.|++.
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeec---cccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            34577889999999999998777665554   344 333333334444444444  455555555544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.76  E-value=0.17  Score=38.98  Aligned_cols=158  Identities=12%  Similarity=0.090  Sum_probs=84.9

Q ss_pred             EecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEE
Q 021925           47 TYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (305)
Q Consensus        47 ~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (305)
                      .+.+-...+.++.|.|+.+ ++++....+.|...+. +|+.+..+...+                               
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-------------------------------   63 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-------------------------------   63 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-------------------------------
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-------------------------------
Confidence            4555566799999999755 5566667788877776 466666554221                               


Q ss_pred             EeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCc------Eeeeec--cccCCccceEEE
Q 021925          126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK------LLKESD--KETGHKKTITSL  197 (305)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~--~~~~~~~~v~~~  197 (305)
                                          .+....+++..++.++++.-.++.+.++++....      ....+.  ....++..+-.+
T Consensus        64 --------------------~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGl  123 (248)
T PF06977_consen   64 --------------------FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGL  123 (248)
T ss_dssp             ---------------------SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEE
T ss_pred             --------------------CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEE
Confidence                                1234456666666555555457888888773211      111221  112356678999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCC---ceEEEEEe---------eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          198 AKAADGSHFLTGSLDKSAKLWDART---LELIKTYV---------TERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      +|+|.++.|+.+-+..-..++.++.   ...+....         .-..+.+++++|....+.+=+..+.+
T Consensus       124 a~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~  194 (248)
T PF06977_consen  124 AYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRL  194 (248)
T ss_dssp             EEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred             EEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCe
Confidence            9999888888887776667776653   22222111         22357889999986665554544444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.70  E-value=0.077  Score=46.28  Aligned_cols=104  Identities=17%  Similarity=0.189  Sum_probs=69.8

Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc--CCCCEEEEEeCCCeEEEEEcC----
Q 021925          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA--ADGSHFLTGSLDKSAKLWDAR----  221 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~----  221 (305)
                      .+.-+.-+.-++..++-+....+.|||.+.+.....-.  ......|..+.|.  |+|+.+++.|..+.|.++--.    
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~--f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES--FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee--ecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            34445555545544444445689999998876433221  1357889999886  588999999999999998532    


Q ss_pred             -----CceEEEEEe----eCCCeeEEEecCCCCcEEEeeCC
Q 021925          222 -----TLELIKTYV----TERPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       222 -----~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~  253 (305)
                           +..+++.+.    ...+|.+..|.++|..++.++..
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNq  149 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQ  149 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCE
Confidence                 224555554    34689999999999766555433

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.60  E-value=0.14  Score=44.69  Aligned_cols=118  Identities=12%  Similarity=0.231  Sum_probs=66.9

Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEee--CCCceEEEEec--CCc-eEEEeCCcceeeeeeEEEEEee
Q 021925           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF--DSPARSVDFAV--GDK-LAVITTDPFMELNSAIHVKRIA  128 (305)
Q Consensus        54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~  128 (305)
                      ...-+.-+.-++.-++-+...++.|||.+.+........  ...|.++.|..  ++. +++++-...+.+....+..-..
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            344444444444444444456799999998876655554  88899998875  444 4444444333333332211111


Q ss_pred             cccCCCCCceEEE--EeccC-CCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 021925          129 RDPADQGGESVLI--LKGPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTE  176 (305)
Q Consensus       129 ~~~~~~~~~~~~~--~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  176 (305)
                      ..   ....++..  +..++ .+|.+..|.++|..++.++  ..+.|+|-.
T Consensus       111 ~~---p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  111 KG---PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             CC---cccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence            11   11122222  23333 6789999999997666554  678888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.58  E-value=0.27  Score=39.06  Aligned_cols=157  Identities=13%  Similarity=0.091  Sum_probs=79.1

Q ss_pred             cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeee---eEEE
Q 021925           49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS---AIHV  124 (305)
Q Consensus        49 ~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  124 (305)
                      ..-.+.+..+.-++||+++++++.-..+.-||--.. =..........+..|.|.|++.+.+++..+.+....   ....
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGET  220 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccc
Confidence            445577889999999998888776555567775322 233333467889999999999888877665554443   2222


Q ss_pred             EEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC
Q 021925          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS  204 (305)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  204 (305)
                      |.....          ......-.+..++|.+++...++|+. |.+ +.....++.=+..+....-...+..+.|.++.+
T Consensus       221 w~~~~~----------~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~  288 (302)
T PF14870_consen  221 WSEPII----------PIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK  288 (302)
T ss_dssp             E---B-----------TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred             cccccC----------CcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc
Confidence            221110          01112234788999998877776654 433 445555554444332223455678888876655


Q ss_pred             EEEEEeCCCeEEEE
Q 021925          205 HFLTGSLDKSAKLW  218 (305)
Q Consensus       205 ~l~~~~~dg~i~iw  218 (305)
                      -++. +.+|.+--|
T Consensus       289 gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  289 GFVL-GQDGVLLRY  301 (302)
T ss_dssp             EEEE--STTEEEEE
T ss_pred             eEEE-CCCcEEEEe
Confidence            4554 458876544

>PHA03098 kelch-like protein; Provisional

Probab=96.54  E-value=0.48  Score=41.45  Aligned_cols=65  Identities=14%  Similarity=0.159  Sum_probs=34.1

Q ss_pred             CCCEEEEeeCC--------CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCc
Q 021925          157 LNRTIISAGED--------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTL  223 (305)
Q Consensus       157 ~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  223 (305)
                      +++..+.|+.+        ..+.+||..+++-...-... ........+.+  +++.++.|+.+     +.+.+||..+.
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-FPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-cccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            45556666542        23889998876543221110 11111122222  66777777754     46778887765


Q ss_pred             e
Q 021925          224 E  224 (305)
Q Consensus       224 ~  224 (305)
                      +
T Consensus       514 ~  514 (534)
T PHA03098        514 T  514 (534)
T ss_pred             E
Confidence            4

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.49  E-value=0.35  Score=39.31  Aligned_cols=238  Identities=14%  Similarity=0.035  Sum_probs=116.8

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee---eEEe----cCCCcceEEEEEcCC----CcEEEEEeCC-------
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---LGTY----RGHNGAVWCCDVSRD----SMTLITGSAD-------   73 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~---~~~~----~~~~~~v~~i~~~~~----~~~l~s~~~d-------   73 (305)
                      ..++|+|.|||+.+++ ...|.|++++ .++..   +..+    .........++++|+    +...++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4678999999987775 5699999998 44443   2233    134567899999994    3333333321       


Q ss_pred             -CcEEEEecCCC-------CeeEEE-ee----CCCceEEEEecCCceEEEeCCccee------eeeeEEEEEeecccCCC
Q 021925           74 -QTAKLWNVETG-------AQLFTF-NF----DSPARSVDFAVGDKLAVITTDPFME------LNSAIHVKRIARDPADQ  134 (305)
Q Consensus        74 -g~v~vwd~~~~-------~~~~~~-~~----~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  134 (305)
                       ..|.-|....+       +.+... ..    ......+.|.|++.+.+...+....      ......+..+.......
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence             23444544433       111111 11    2345679999999777776654320      00112223332211100


Q ss_pred             ---C-----CceEEEEeccCCCeeEEEEcCC-CCEEEEe-eCCCcEEEEeCCCCcE------------------------
Q 021925          135 ---G-----GESVLILKGPQGRINRAVWGPL-NRTIISA-GEDAIVRIWDTETGKL------------------------  180 (305)
Q Consensus       135 ---~-----~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~~dg~i~iwd~~~~~~------------------------  180 (305)
                         .     ......+..--.....++|+|. +++.++= +.++.=.|--+..+..                        
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~  240 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP  240 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred             CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence               0     0011112212223457899998 5544321 2232222222222211                        


Q ss_pred             -----eeeeccccCCccceEEEEEcC-------CCCEEEEEeCCCeEEEEEcCCceEEEEEe-----eCCCeeEEEecCC
Q 021925          181 -----LKESDKETGHKKTITSLAKAA-------DGSHFLTGSLDKSAKLWDARTLELIKTYV-----TERPVNAVTMSPL  243 (305)
Q Consensus       181 -----~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~  243 (305)
                           ...+    .+...+..+.|..       .|.++++.-..+.|...++.....+....     ...++..+++.||
T Consensus       241 ~~~~P~~~~----~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD  316 (331)
T PF07995_consen  241 GFVPPVFAY----PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD  316 (331)
T ss_dssp             TS---SEEE----TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred             CcCccceee----cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence                 0111    2335566777664       34455555556788888887553332222     3346899999999


Q ss_pred             CCcEEEeeCCcE
Q 021925          244 LDHVCIGEPQTI  255 (305)
Q Consensus       244 ~~~l~~~~~~~~  255 (305)
                      |.+.++...++.
T Consensus       317 G~Lyv~~d~~G~  328 (331)
T PF07995_consen  317 GALYVSDDSDGK  328 (331)
T ss_dssp             SEEEEEE-TTTT
T ss_pred             CeEEEEECCCCe
Confidence            988887765554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.49  E-value=0.021  Score=42.30  Aligned_cols=102  Identities=8%  Similarity=0.096  Sum_probs=62.5

Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceE-EEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eC-CC
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TE-RP  234 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~-~~  234 (305)
                      +..++.|+.+|.|++|.............  .....+- .+.--.++.+..+++.||.|+.|++.-++.+.... |. .+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~--s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~  147 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC--SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES  147 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhh--cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence            45689999999999998873221111110  1122222 22333355678899999999999999887776655 44 45


Q ss_pred             eeEEEecCCCCcEEEe--eCCcEEEEEEeehhhh
Q 021925          235 VNAVTMSPLLDHVCIG--EPQTIKFMLLVYLFVL  266 (305)
Q Consensus       235 v~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~  266 (305)
                      +.....+..++.++.+  +.+..     ++.|+.
T Consensus       148 ~e~~ivv~sd~~i~~a~~S~d~~-----~k~W~v  176 (238)
T KOG2444|consen  148 GEELIVVGSDEFLKIADTSHDRV-----LKKWNV  176 (238)
T ss_pred             cceeEEecCCceEEeeccccchh-----hhhcch
Confidence            5555555556666655  44433     455554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.47  E-value=0.66  Score=42.18  Aligned_cols=191  Identities=18%  Similarity=0.123  Sum_probs=97.3

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceE-------------EEEEcC--CCcEEEEEeC----------CCcE
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-------------CCDVSR--DSMTLITGSA----------DQTA   76 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~-------------~i~~~~--~~~~l~s~~~----------dg~v   76 (305)
                      +..++.++.|+.+.-.|.++|+.+..+.. ++.|.             .+.-.|  .+..+++++.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            44788888999999999999998877642 22221             111122  1335666643          6889


Q ss_pred             EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      +-+|.++|+.+..+....+...-.. +.+.....++.         ..|.....  +.+...+..-.+...+    .+..
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~-~~g~~~~~gg~---------n~W~~~s~--D~~~glvy~ptGn~~p----d~~g  402 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPP-APGETYTRNTP---------NSWSVASY--DEKLGLVYLPMGNQTP----DQWG  402 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCC-CCCCEeccCCC---------CccCceEE--cCCCCeEEEeCCCccc----cccC
Confidence            9999999999998874322111000 11111111110         00000000  0000011110111000    0000


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCc-------cceEEEEEcC-CCC---EEEEEeCCCeEEEEEcCCceE
Q 021925          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK-------KTITSLAKAA-DGS---HFLTGSLDKSAKLWDARTLEL  225 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~  225 (305)
                      ..+.....-..+.|.-.|.++++....++.. .|.       ....-+.+.. +|+   .++.++.+|.+++.|.++|++
T Consensus       403 ~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~-~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  481 (764)
T TIGR03074       403 GDRTPADEKYSSSLVALDATTGKERWVFQTV-HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP  481 (764)
T ss_pred             CccccCcccccceEEEEeCCCCceEEEeccc-CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence            0000000112456777888888887777632 121       1122222322 553   789999999999999999998


Q ss_pred             EEEEe
Q 021925          226 IKTYV  230 (305)
Q Consensus       226 ~~~~~  230 (305)
                      +...+
T Consensus       482 l~~~~  486 (764)
T TIGR03074       482 IVPVE  486 (764)
T ss_pred             Eeece
Confidence            87654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.46  E-value=0.28  Score=37.80  Aligned_cols=130  Identities=14%  Similarity=0.099  Sum_probs=80.3

Q ss_pred             eeeEEec-CCCcceEEEEEcCCCcEEEEEeCCC--cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeee
Q 021925           43 ERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN  119 (305)
Q Consensus        43 ~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  119 (305)
                      +.+.++. ....-...+.|..++.++-+.+.-|  .|+.+|+.+++.......+.....                     
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg---------------------   92 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG---------------------   92 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E---------------------
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc---------------------
Confidence            3444554 1234567889977888888888766  699999999988776654432210                     


Q ss_pred             eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE
Q 021925          120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (305)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  199 (305)
                                       +-   +.-+.+.+..+.           -.++...+||..+-+.+.++.    ....=..++ 
T Consensus        93 -----------------EG---it~~~d~l~qLT-----------Wk~~~~f~yd~~tl~~~~~~~----y~~EGWGLt-  136 (264)
T PF05096_consen   93 -----------------EG---ITILGDKLYQLT-----------WKEGTGFVYDPNTLKKIGTFP----YPGEGWGLT-  136 (264)
T ss_dssp             -----------------EE---EEEETTEEEEEE-----------SSSSEEEEEETTTTEEEEEEE-----SSS--EEE-
T ss_pred             -----------------ee---EEEECCEEEEEE-----------ecCCeEEEEccccceEEEEEe----cCCcceEEE-
Confidence                             00   011122233333           356889999999999888886    334555666 


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       200 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                       .|++.|+.+....+++++|..+.+....+.
T Consensus       137 -~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen  137 -SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             -ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred             -cCCCEEEEECCccceEEECCcccceEEEEE
Confidence             456677777777889999998877666655

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.45  E-value=0.33  Score=38.58  Aligned_cols=225  Identities=12%  Similarity=0.112  Sum_probs=105.5

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC-eeeEE--ecCC---CcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGT--YRGH---NGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~-~~~~~--~~~~---~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      -..++.+|.|..+..-+++|. .+.  |+...++ +.=..  ....   .-...+|.|..+ ..+++ +..+ +.+-..+
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~D   88 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTTD   88 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEESS
T ss_pred             CCCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEecC
Confidence            456899999986555555554 554  3434333 21111  1111   224677888643 34444 4444 4444445


Q ss_pred             CCCeeEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           83 TGAQLFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        83 ~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      .++.=..+.    .+.....+....++...+++..+.+        +...    .....-........+.+..+..+++|
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~i--------y~T~----DgG~tW~~~~~~~~gs~~~~~r~~dG  156 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAI--------YRTT----DGGKTWQAVVSETSGSINDITRSSDG  156 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--E--------EEES----STTSSEEEEE-S----EEEEEE-TTS
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcE--------EEeC----CCCCCeeEcccCCcceeEeEEECCCC
Confidence            555444433    2233344444444444444332111        1111    01112223344555778889999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE-cCCceEEEE----Ee-eC
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD-ARTLELIKT----YV-TE  232 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~----~~-~~  232 (305)
                      ++++++.......-||--...-...-.   .....|.+|.|.|++.+.+.+ ..|.|++=+ ....+.-..    .. ..
T Consensus       157 ~~vavs~~G~~~~s~~~G~~~w~~~~r---~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~  232 (302)
T PF14870_consen  157 RYVAVSSRGNFYSSWDPGQTTWQPHNR---NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNG  232 (302)
T ss_dssp             -EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred             cEEEEECcccEEEEecCCCccceEEcc---CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCc
Confidence            988888665555677754321111111   246789999999998765544 889898887 222322222    11 23


Q ss_pred             CCeeEEEecCCCCcEEEeeCCcE
Q 021925          233 RPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       233 ~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      -.+.+++|.+++...++|++...
T Consensus       233 ~~~ld~a~~~~~~~wa~gg~G~l  255 (302)
T PF14870_consen  233 YGILDLAYRPPNEIWAVGGSGTL  255 (302)
T ss_dssp             S-EEEEEESSSS-EEEEESTT-E
T ss_pred             eeeEEEEecCCCCEEEEeCCccE
Confidence            34789999999888777765543

>PHA02713 hypothetical protein; Provisional

Probab=96.39  E-value=0.26  Score=43.20  Aligned_cols=63  Identities=8%  Similarity=0.191  Sum_probs=35.7

Q ss_pred             CCCEEEEeeCC------CcEEEEeCCC-CcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCC--eEEEEEcCCce
Q 021925          157 LNRTIISAGED------AIVRIWDTET-GKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDARTLE  224 (305)
Q Consensus       157 ~~~~l~~~~~d------g~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~  224 (305)
                      +++..+.|+.+      ..+..||..+ .+-  +..+.   ........+.+  +++..++|+.||  .+..||..+.+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~---~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE---SRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC---cccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            35556666643      2467899886 333  33332   22222222333  678889999888  56666666543

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=96.34  E-value=0.65  Score=41.33  Aligned_cols=98  Identities=15%  Similarity=0.176  Sum_probs=57.8

Q ss_pred             CCeeEEEEcCCCCEEEEeeCCC-----cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          147 GRINRAVWGPLNRTIISAGEDA-----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      +.-..++|-|+|..+++-..||     .|.++..+ |-.-..+....+....+...+|+-....++.+ ..+.+++|-..
T Consensus       247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttk  324 (1243)
T COG5290         247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTK  324 (1243)
T ss_pred             cchhccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEcc
Confidence            3344589999999999877555     35555532 22112221111344556667777655544443 46679999877


Q ss_pred             CceEEEEEe-eCCCeeEEEecCCCCc
Q 021925          222 TLELIKTYV-TERPVNAVTMSPLLDH  246 (305)
Q Consensus       222 ~~~~~~~~~-~~~~v~~~~~~~~~~~  246 (305)
                      +..-.-... .-..+.-+.|+|....
T Consensus       325 NyhWYLK~e~~ip~~s~vkwhpe~~n  350 (1243)
T COG5290         325 NYHWYLKVERQIPGISYVKWHPEEKN  350 (1243)
T ss_pred             ceEEEEEEeecCCCcceeeeccccCc
Confidence            654433222 3345677899997543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.33  E-value=0.32  Score=41.64  Aligned_cols=124  Identities=10%  Similarity=0.099  Sum_probs=78.4

Q ss_pred             cCCCeeEEEEcCCC----CEEEEeeCCCcEEEEeCCC-----CcEeeeeccc--cCCccceEEEEEcCCCCEEEEEeCCC
Q 021925          145 PQGRINRAVWGPLN----RTIISAGEDAIVRIWDTET-----GKLLKESDKE--TGHKKTITSLAKAADGSHFLTGSLDK  213 (305)
Q Consensus       145 ~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg  213 (305)
                      .-..|..+.|.|-+    ..+++.-....|.+|.+..     ++.+..-...  ....--...+.|+|....|++-....
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d  134 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD  134 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence            34457889999863    3455666678899998862     2222111100  01111234578999988888776655


Q ss_pred             eEEEEEcCC--ceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          214 SAKLWDART--LELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       214 ~i~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      .--+.+++.  .+....+...+.|.|.+|.+||+.|++|-+....    .++|+-....+.
T Consensus       135 vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLH----SyiWd~~qKtL~  191 (671)
T PF15390_consen  135 VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLH----SYIWDSAQKTLH  191 (671)
T ss_pred             eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEE----EEEecCchhhhh
Confidence            545556553  2333445578889999999999999998777665    566665544443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.29  E-value=0.26  Score=44.22  Aligned_cols=92  Identities=11%  Similarity=0.142  Sum_probs=56.2

Q ss_pred             cceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecc
Q 021925           53 GAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD  130 (305)
Q Consensus        53 ~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (305)
                      -.|..|.++|+|++++..|..| |.|-.+... .....+. .+..+.|-.+.-+..++                      
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~----------------------  141 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF----------------------  141 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc----------------------
Confidence            3688899999999998888855 666555321 1111111 11222222221111111                      


Q ss_pred             cCCCCCceEEEEeccCCCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCC
Q 021925          131 PADQGGESVLILKGPQGRINRAVWGPLN---RTIISAGEDAIVRIWDTETG  178 (305)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~  178 (305)
                                 ...+...|..+.|+|.+   ..|+.-..|+.+++||+...
T Consensus       142 -----------~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  142 -----------TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             -----------cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence                       12334568889999974   78999999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.20  E-value=0.57  Score=38.75  Aligned_cols=66  Identities=9%  Similarity=0.088  Sum_probs=39.1

Q ss_pred             cceEEEEEcCCCCEEEEee-----------CCC-ceEEEEcCC--Ce--eeEEecCCCcceEEEEEcCCCcEEEEEeCCC
Q 021925           11 RPLTYLKYNKDGDLLFSCA-----------KDH-TPTVWFADN--GE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQ   74 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~-----------~dg-~v~iw~~~~--~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg   74 (305)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  |+  ....+-..-.....+++.+++ .++ ++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            4567899999999877643           223 677775432  32  223343333456889999888 444 44433


Q ss_pred             cEEEE
Q 021925           75 TAKLW   79 (305)
Q Consensus        75 ~v~vw   79 (305)
                       |..+
T Consensus        92 -i~~~   95 (367)
T TIGR02604        92 -ILFL   95 (367)
T ss_pred             -EEEE
Confidence             4433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.12  E-value=0.44  Score=41.85  Aligned_cols=193  Identities=14%  Similarity=0.097  Sum_probs=90.6

Q ss_pred             CCCEEEEeeCC-C-----ceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCc-----EEEEecCCCCeeE
Q 021925           21 DGDLLFSCAKD-H-----TPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQT-----AKLWNVETGAQLF   88 (305)
Q Consensus        21 ~~~~l~s~~~d-g-----~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~-----v~vwd~~~~~~~~   88 (305)
                      ++...++||.| |     ++..||..+++-.. +..-..+-....... +|...++||.||.     +-.||.++.+-..
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~  410 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP  410 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccc
Confidence            35677888888 3     57778877766433 211111111111111 6778889998865     6667766554322


Q ss_pred             EEeeCCCceEEEEec-CCceEEEeCCccee-eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925           89 TFNFDSPARSVDFAV-GDKLAVITTDPFME-LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (305)
Q Consensus        89 ~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  166 (305)
                      .-............. ++.+.++++..... ....+..++.....-    ..+..+........ + ..-++...+.|+.
T Consensus       411 va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W----~~~~~M~~~R~~~g-~-a~~~~~iYvvGG~  484 (571)
T KOG4441|consen  411 VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW----TLIAPMNTRRSGFG-V-AVLNGKIYVVGGF  484 (571)
T ss_pred             cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce----eecCCcccccccce-E-EEECCEEEEECCc
Confidence            222222333333333 44444444432222 223333333221110    01111111111111 1 2224667777777


Q ss_pred             CC-----cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCe-----EEEEEcCCc
Q 021925          167 DA-----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-----AKLWDARTL  223 (305)
Q Consensus       167 dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~  223 (305)
                      |+     +|..||..+.+....-. .......+.....  ++...++|+.||.     |..||..+.
T Consensus       485 ~~~~~~~~VE~ydp~~~~W~~v~~-m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  485 DGTSALSSVERYDPETNQWTMVAP-MTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             cCCCccceEEEEcCCCCceeEccc-CccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence            66     37778888765443321 1112222222222  5667788887764     666665544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.08  E-value=1  Score=40.60  Aligned_cols=76  Identities=13%  Similarity=0.122  Sum_probs=54.1

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcC---------CCee---eEEe--------cCCCcceEEEEEcCC---CcE
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---------NGER---LGTY--------RGHNGAVWCCDVSRD---SMT   66 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~---------~~~~---~~~~--------~~~~~~v~~i~~~~~---~~~   66 (305)
                      .-.|..+..+|+|++||..|..|...+.=..         .|+.   .+++        ..+...|..+.|+|.   +..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3468999999999999999887655443211         1111   1111        134568999999995   578


Q ss_pred             EEEEeCCCcEEEEecCCCC
Q 021925           67 LITGSADQTAKLWNVETGA   85 (305)
Q Consensus        67 l~s~~~dg~v~vwd~~~~~   85 (305)
                      |+.-..|+++++||+...+
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            9999999999999997544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.04  E-value=0.23  Score=33.70  Aligned_cols=96  Identities=17%  Similarity=0.140  Sum_probs=62.6

Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCCCc--------EeeeeccccCCccceEEEEEcC-----CCCEEEEEeCCCeEEEE
Q 021925          152 AVWGPLNRTIISAGEDAIVRIWDTETGK--------LLKESDKETGHKKTITSLAKAA-----DGSHFLTGSLDKSAKLW  218 (305)
Q Consensus       152 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw  218 (305)
                      -.|.....-|++++.-|+|.|++.....        .++.+.    -...|++++-.+     +...|+.|+ ...+..|
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN----in~~italaaG~l~~~~~~D~LliGt-~t~llaY   78 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN----INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAY   78 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE----CCCceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence            3455555678888889999999876432        333332    456777776433     234566665 5579999


Q ss_pred             EcCCceEEEEEeeCCCeeEEEecC----CCCcEEEeeC
Q 021925          219 DARTLELIKTYVTERPVNAVTMSP----LLDHVCIGEP  252 (305)
Q Consensus       219 d~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~  252 (305)
                      |+....-+..-..+..|+++.+-.    +.+++++|+.
T Consensus        79 DV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGn  116 (136)
T PF14781_consen   79 DVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGN  116 (136)
T ss_pred             EcccCchhhhhhCccceeEEEEEecCCCCCcEEEECce
Confidence            999877665555667788887632    3455666653

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.94  E-value=0.2  Score=41.61  Aligned_cols=87  Identities=15%  Similarity=0.226  Sum_probs=62.7

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEE-EEEcCC-----------------CcEE
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-CDVSRD-----------------SMTL   67 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~-i~~~~~-----------------~~~l   67 (305)
                      |......+.++..+|++++.|+...=|.|.++|+.++..++..++..+.-.. +....+                 ..+|
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            5566778999999999998888877799999999999888887765543111 111111                 1122


Q ss_pred             -EEEeCCCcEEEEecCCCCeeEEEee
Q 021925           68 -ITGSADQTAKLWNVETGAQLFTFNF   92 (305)
Q Consensus        68 -~s~~~dg~v~vwd~~~~~~~~~~~~   92 (305)
                       +-+-.-|.|-||.++++..+..+..
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEEe
Confidence             3455679999999999998887763

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.87  E-value=0.63  Score=36.31  Aligned_cols=155  Identities=10%  Similarity=0.138  Sum_probs=90.0

Q ss_pred             cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC--CceEEEEecCCceEEEeCCcceeeeeeEEEEE
Q 021925           49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKR  126 (305)
Q Consensus        49 ~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (305)
                      .+-...+.++.|+|+.+.|.+......-.|+=-.+|+.+.++....  ....+.+..++.+                   
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~f-------------------  142 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQF-------------------  142 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEE-------------------
Confidence            3444569999999999999888887877788777888888776332  2222333333332                   


Q ss_pred             eecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE-------eeeeccccCCccceEEEEE
Q 021925          127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-------LKESDKETGHKKTITSLAK  199 (305)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~  199 (305)
                                                        .++--.+..+.++.+.....       .-.+......+...-.++|
T Consensus       143 ----------------------------------vi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~  188 (316)
T COG3204         143 ----------------------------------VIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAW  188 (316)
T ss_pred             ----------------------------------EEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeec
Confidence                                              22222333333333322211       1111111123667888999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-----------eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-----------TERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       200 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      +|..+.|..+-+..=+.|+............           .-..|.++.|++....+.+=|.++.+
T Consensus       189 d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~  256 (316)
T COG3204         189 DPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRR  256 (316)
T ss_pred             CCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCce
Confidence            9998888888887777777665332111110           12246788898776666555555444

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.86  E-value=0.53  Score=39.75  Aligned_cols=96  Identities=11%  Similarity=0.113  Sum_probs=55.6

Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCC-ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC
Q 021925           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA  132 (305)
Q Consensus        54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (305)
                      .|..+..++.|..++-+|.+|.+.+.=.+.-..-..+..+.+ |.|-.+.-+..++..                      
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts----------------------  162 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS----------------------  162 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc----------------------
Confidence            566777888998888888888655543222222222322222 222222222222111                      


Q ss_pred             CCCCceEEEEeccCCCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCCcEee
Q 021925          133 DQGGESVLILKGPQGRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLLK  182 (305)
Q Consensus       133 ~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~  182 (305)
                                 ...-.+..++|+|+.   ..|..-+.|..+++||+...+.+.
T Consensus       163 -----------s~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  163 -----------STSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             -----------CCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence                       112235668899976   678888899999999998765543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.47  Score=35.01  Aligned_cols=82  Identities=13%  Similarity=0.092  Sum_probs=49.0

Q ss_pred             CCCEEEEeeCC--CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCCCCeeEEEeeCCCce
Q 021925           21 DGDLLFSCAKD--HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPAR   97 (305)
Q Consensus        21 ~~~~l~s~~~d--g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~v~   97 (305)
                      +|.++.+.+.-  ..|++||+.+++.+....-....+..=-...-+..+. -.-.+|.-..+|.++.+++..++.++.-.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            45566665543  4799999999987765442222222111111122332 23457888899999988888887776666


Q ss_pred             EEEEe
Q 021925           98 SVDFA  102 (305)
Q Consensus        98 ~~~~~  102 (305)
                      .++..
T Consensus       135 gLt~d  139 (262)
T COG3823         135 GLTSD  139 (262)
T ss_pred             eeecC
Confidence            65543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.81  E-value=0.071  Score=28.09  Aligned_cols=31  Identities=6%  Similarity=0.072  Sum_probs=25.9

Q ss_pred             cceEEEEEcCCC---CEEEEEeCCCeEEEEEcCC
Q 021925          192 KTITSLAKAADG---SHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       192 ~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~  222 (305)
                      +.+.++.|+|+.   .+|+.+-..|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368899999854   4888888889999999995

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.74  E-value=0.14  Score=38.80  Aligned_cols=72  Identities=14%  Similarity=0.166  Sum_probs=52.5

Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec----ccc-------CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESD----KET-------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      +..++.++++.+.+|.+++||+.+++.+..-.    ...       .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            44568889999999999999999887654321    011       3556788999998888777665 68899998765


Q ss_pred             ceEE
Q 021925          223 LELI  226 (305)
Q Consensus       223 ~~~~  226 (305)
                      +.-+
T Consensus        97 ~~W~  100 (219)
T PF07569_consen   97 GCWI  100 (219)
T ss_pred             ceeE
Confidence            4433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.72  E-value=0.2  Score=46.03  Aligned_cols=99  Identities=15%  Similarity=0.145  Sum_probs=70.1

Q ss_pred             CCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcE-eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925          147 GRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       147 ~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  224 (305)
                      ....++.|.|.- ...+....|+.|++.-+..... +..+    ......++++|+|.|+.++.|-..|++.-|... ++
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~----p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-le  230 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF----PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LE  230 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhhhccc----CcccceeeEEeccccceeeEecCCCeEEEeecc-cc
Confidence            345677888865 3455667789898887754322 2222    356788999999999999999999999988754 44


Q ss_pred             EEEEEe-----eCCCeeEEEecCCCCcEEEe
Q 021925          225 LIKTYV-----TERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       225 ~~~~~~-----~~~~v~~~~~~~~~~~l~~~  250 (305)
                      ....+.     ....|.+++|-....++++-
T Consensus       231 ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  231 IKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             eeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            333332     23578999998888777763

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.72  E-value=0.07  Score=28.12  Aligned_cols=31  Identities=23%  Similarity=0.286  Sum_probs=25.3

Q ss_pred             CCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCC
Q 021925          147 GRINRAVWGPLN---RTIISAGEDAIVRIWDTET  177 (305)
Q Consensus       147 ~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~  177 (305)
                      +.+.++.|+|..   .+|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            357899999854   4777777789999999995

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.55  E-value=0.32  Score=44.89  Aligned_cols=180  Identities=12%  Similarity=0.103  Sum_probs=95.4

Q ss_pred             EEEcCCCCEEEEeeCCCceEEEEcCC-------Ce---------eeEEecCC-CcceEEEEEcCCCcEEEEE--eCCCcE
Q 021925           16 LKYNKDGDLLFSCAKDHTPTVWFADN-------GE---------RLGTYRGH-NGAVWCCDVSRDSMTLITG--SADQTA   76 (305)
Q Consensus        16 ~~~~~~~~~l~s~~~dg~v~iw~~~~-------~~---------~~~~~~~~-~~~v~~i~~~~~~~~l~s~--~~dg~v   76 (305)
                      ++.++.-..+++++..+.+.++-..+       +.         ....+.-| .-++..+...+|+...++.  +.+-.|
T Consensus        47 la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v  126 (1405)
T KOG3630|consen   47 LAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAV  126 (1405)
T ss_pred             hhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCceE
Confidence            44455445566666666666663321       10         11222222 2355666667776654433  334478


Q ss_pred             EEEecCCCCeeE--------E----EeeCCCceEEEEecCCce--EEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925           77 KLWNVETGAQLF--------T----FNFDSPARSVDFAVGDKL--AVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (305)
Q Consensus        77 ~vwd~~~~~~~~--------~----~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (305)
                      ..+|+++-..-.        .    +.......++.|.|.-..  ++...+      ..+.+..+...     ...+.. 
T Consensus       127 ~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~d------lsl~V~~~~~~-----~~~v~s-  194 (1405)
T KOG3630|consen  127 YSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSD------LSLRVKSTKQL-----AQNVTS-  194 (1405)
T ss_pred             EEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccc------cchhhhhhhhh-----hhhhcc-
Confidence            899987543211        1    112334456666663222  222221      11111111100     011111 


Q ss_pred             eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCC-ccceEEEEEcCCCCEEEE
Q 021925          143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAADGSHFLT  208 (305)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~  208 (305)
                      -.-....++++|+|.|+.++.|-..|++.-|-.. .+....+...... ...|.+++|-....++++
T Consensus       195 ~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  195 FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            1234567899999999999999999999888754 4434444332222 478999999877666664

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.54  E-value=0.14  Score=26.85  Aligned_cols=41  Identities=20%  Similarity=0.192  Sum_probs=30.1

Q ss_pred             CCCCEEEEEe-CCCeEEEEEcCCceEEEEEeeCCCeeEEEec
Q 021925          201 ADGSHFLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (305)
Q Consensus       201 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~  241 (305)
                      |+++.|+++. .+++|.++|..+++.+..+........++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            5677666555 5889999999999998888765555565553

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA02713 hypothetical protein; Provisional

Probab=95.38  E-value=1.8  Score=38.17  Aligned_cols=83  Identities=8%  Similarity=-0.058  Sum_probs=40.1

Q ss_pred             cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC------CeEEEEEcCC-ce--EEEEEeeCCCeeEEE
Q 021925          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD------KSAKLWDART-LE--LIKTYVTERPVNAVT  239 (305)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~--~~~~~~~~~~v~~~~  239 (305)
                      .+..||..+.+-...-... ...... +++ .-+++..+.|+.+      ..+..||..+ .+  .+..+........++
T Consensus       433 ~ve~YDP~td~W~~v~~m~-~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~  509 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFW-TGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI  509 (557)
T ss_pred             eEEEECCCCCeEeecCCCC-cccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence            4778888765432211110 111111 122 2256677777754      2467898886 33  223332221112222


Q ss_pred             ecCCCCcEEEeeCCcE
Q 021925          240 MSPLLDHVCIGEPQTI  255 (305)
Q Consensus       240 ~~~~~~~l~~~~~~~~  255 (305)
                       .-+++..++|+.++.
T Consensus       510 -~~~~~iyv~Gg~~~~  524 (557)
T PHA02713        510 -LHDNTIMMLHCYESY  524 (557)
T ss_pred             -EECCEEEEEeeecce
Confidence             226677788877763

>PRK13684 Ycf48-like protein; Provisional

Probab=95.18  E-value=1.4  Score=35.89  Aligned_cols=151  Identities=5%  Similarity=-0.002  Sum_probs=79.9

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEE-EEcCCCeeeEEe-cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTV-WFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~i-w~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~   87 (305)
                      ...+.++.+.|++.+++++ ..|.+.. ++ ..++.-... ..-...+.++.+.++++.++++ ..|.+.+=....+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            4568889999988766655 4565543 22 222222222 2344678999999988776654 5576643233344332


Q ss_pred             EEEee-----CCCceEEEEecCCceEEEeCCcceeeeee-EEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           88 FTFNF-----DSPARSVDFAVGDKLAVITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        88 ~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      .....     ...+..+.+.+++...+++..+....... ...|....           ....-....+.+.+..+++.+
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~-----------~~~~~~~~~~~~~~~~~~~~~  317 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDP-----------VGEEVPSNFYKIVFLDPEKGF  317 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECC-----------cCCCCCcceEEEEEeCCCceE
Confidence            22221     13466788888877776665432222111 11111110           001112346667777666655


Q ss_pred             EEeeCCCcEEEEeC
Q 021925          162 ISAGEDAIVRIWDT  175 (305)
Q Consensus       162 ~~~~~dg~i~iwd~  175 (305)
                      + .+..|.|..++-
T Consensus       318 ~-~G~~G~il~~~~  330 (334)
T PRK13684        318 V-LGQRGVLLRYVG  330 (334)
T ss_pred             E-ECCCceEEEecC
Confidence            5 445688777653

>PHA03098 kelch-like protein; Provisional

Probab=95.16  E-value=1.4  Score=38.59  Aligned_cols=66  Identities=18%  Similarity=0.180  Sum_probs=34.5

Q ss_pred             CCCEEEEeeCC------CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC--------CeEEEEEcCC
Q 021925          157 LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD--------KSAKLWDART  222 (305)
Q Consensus       157 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~  222 (305)
                      +++..+.|+.+      ..+..||..+.+-...-....+. ... +++ ..++..++.|+.+        ..+.+||..+
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-YGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-cCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCC
Confidence            45666666632      35889998875433221111111 111 122 2356666777643        2388889876


Q ss_pred             ceE
Q 021925          223 LEL  225 (305)
Q Consensus       223 ~~~  225 (305)
                      .+-
T Consensus       466 ~~W  468 (534)
T PHA03098        466 NKW  468 (534)
T ss_pred             Cce
Confidence            643

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.14  E-value=0.17  Score=26.44  Aligned_cols=40  Identities=15%  Similarity=0.133  Sum_probs=29.5

Q ss_pred             CCCcEEEEEe-CCCcEEEEecCCCCeeEEEeeCCCceEEEE
Q 021925           62 RDSMTLITGS-ADQTAKLWNVETGAQLFTFNFDSPARSVDF  101 (305)
Q Consensus        62 ~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~  101 (305)
                      |++++|+++. .+++|.++|..+++.+..+........+.+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            5677666554 588999999999988888876655555554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.08  E-value=2.6  Score=38.48  Aligned_cols=73  Identities=15%  Similarity=0.169  Sum_probs=51.2

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcc--------eEEEEEcC----------------CCcEEEEEeCCCcEE
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA--------VWCCDVSR----------------DSMTLITGSADQTAK   77 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~--------v~~i~~~~----------------~~~~l~s~~~dg~v~   77 (305)
                      +..|+.++.++.|.-.|..+|+.+-++......        ...+.+..                .+..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            457777888899999999999988877532210        11222211                234788888899999


Q ss_pred             EEecCCCCeeEEEeeCC
Q 021925           78 LWNVETGAQLFTFNFDS   94 (305)
Q Consensus        78 vwd~~~~~~~~~~~~~~   94 (305)
                      -.|.++|+.+..+..+.
T Consensus       274 ALDA~TGk~~W~fg~~G  290 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNG  290 (764)
T ss_pred             EEECCCCCEEEEecCCC
Confidence            99999999887765433

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.07  E-value=0.29  Score=37.04  Aligned_cols=65  Identities=12%  Similarity=0.265  Sum_probs=48.1

Q ss_pred             EcCCCCEEEEeeCCCceEEEEcCCCeeeEEe-------c-------CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925           18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTY-------R-------GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus        18 ~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~-------~-------~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      +..++++|++.+.+|.+++||+.+++.+..-       .       .....|..+.+..+|.-+++-+ +|....|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4457889999999999999999987754321       1       2446788888888887666654 47888888653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.99  E-value=0.014  Score=51.69  Aligned_cols=174  Identities=14%  Similarity=0.111  Sum_probs=94.1

Q ss_pred             ecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcC--CCeeeEE-----ecCCCcceEEEEEcC---CCcEEEEEeCCC
Q 021925            6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFAD--NGERLGT-----YRGHNGAVWCCDVSR---DSMTLITGSADQ   74 (305)
Q Consensus         6 l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~--~~~~~~~-----~~~~~~~v~~i~~~~---~~~~l~s~~~dg   74 (305)
                      ++|..+.|-.+.|.. +-..++  -.-|.+.+|++.  .|+....     .......+.-+.|.|   +.-++..+-.++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            567778888888843 222222  234688899875  3443222     222334456666665   556666677788


Q ss_pred             cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (305)
Q Consensus        75 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (305)
                      .+++..+.+...-....|...+..+++...|-..+                                          -..
T Consensus       206 ~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l------------------------------------------~~l  243 (1283)
T KOG1916|consen  206 EIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKL------------------------------------------ASL  243 (1283)
T ss_pred             ceeEeeechHHHHHHHhcCCCcccHHHHhhchhhh------------------------------------------eee
Confidence            88887765443211111444444444332221111                                          116


Q ss_pred             cCCCCEEEEeeCCCcEEEEeCCC-C----cEeeeeccccCCcc-ceEEEEEcCCC---------CEEEEEeC-CCeEEEE
Q 021925          155 GPLNRTIISAGEDAIVRIWDTET-G----KLLKESDKETGHKK-TITSLAKAADG---------SHFLTGSL-DKSAKLW  218 (305)
Q Consensus       155 ~~~~~~l~~~~~dg~i~iwd~~~-~----~~~~~~~~~~~~~~-~v~~~~~~~~~---------~~l~~~~~-dg~i~iw  218 (305)
                      ||||+.+++++.||.++.|.+.- +    .++...+   .|.+ +-.|.-++.+.         .++++++. +..+++|
T Consensus       244 SpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk---phd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w  320 (1283)
T KOG1916|consen  244 SPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK---PHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFW  320 (1283)
T ss_pred             CCCCcEEEEeecCCccceeeeeeeccccHhhhhccC---CCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEe
Confidence            89999999999999998887642 2    2333333   3442 22222233221         12344443 4558888


Q ss_pred             EcCCceEE
Q 021925          219 DARTLELI  226 (305)
Q Consensus       219 d~~~~~~~  226 (305)
                      .....+|+
T Consensus       321 ~~a~w~Cl  328 (1283)
T KOG1916|consen  321 AEAPWQCL  328 (1283)
T ss_pred             eccchhhh
Confidence            87776665

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=94.98  E-value=0.61  Score=35.77  Aligned_cols=145  Identities=10%  Similarity=0.022  Sum_probs=76.2

Q ss_pred             eEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-C--CcEEEEecCCC--CeeE-----EEeeCCCceEEEEec
Q 021925           34 PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-D--QTAKLWNVETG--AQLF-----TFNFDSPARSVDFAV  103 (305)
Q Consensus        34 v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d--g~v~vwd~~~~--~~~~-----~~~~~~~v~~~~~~~  103 (305)
                      -.+||+.+++....--..+--..+-.+.+||+.|.+|+. +  ..+++++..+.  .+..     .+..+..-.+...-+
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            357888877653322222223334457789999998876 2  45788876441  1111     122333334556667


Q ss_pred             CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-----ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 021925          104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-----GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG  178 (305)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  178 (305)
                      +|+.+++++......    ..+..  ............+.     ....--..+...|+|+.++.+..++  .|||..+.
T Consensus       128 DG~vlIvGG~~~~t~----E~~P~--~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n  199 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTY----EFWPP--KGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN  199 (243)
T ss_pred             CCCEEEEeCcCCCcc----cccCC--ccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence            899888887641110    00000  00000000010111     1112223566789999998888654  57798888


Q ss_pred             cEeeeecc
Q 021925          179 KLLKESDK  186 (305)
Q Consensus       179 ~~~~~~~~  186 (305)
                      +.++.+..
T Consensus       200 ~v~~~lP~  207 (243)
T PF07250_consen  200 TVVRTLPD  207 (243)
T ss_pred             eEEeeCCC
Confidence            77777764

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.83  E-value=0.81  Score=43.04  Aligned_cols=162  Identities=12%  Similarity=0.118  Sum_probs=88.1

Q ss_pred             CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEec--------C-CceEEEeCCcceeeee
Q 021925           51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV--------G-DKLAVITTDPFMELNS  120 (305)
Q Consensus        51 ~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~--------~-~~~~~~~~~~~~~~~~  120 (305)
                      |...-..+-+-|.=.+.- .+-|+.+.+|+.+++.....+. ....|..+..-.        . ...+++++...+.+  
T Consensus        77 ~~~~~~~mGiFpeI~RaW-iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~i--  153 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAW-ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVI--  153 (1311)
T ss_pred             CcceeeeeccchhhcceE-EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEE--
Confidence            333444555556432222 2457889999999977666665 455555554322        1 12333333221111  


Q ss_pred             eEEEEEeecccCCCC-C--ceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC----C---Cc-E---------
Q 021925          121 AIHVKRIARDPADQG-G--ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE----T---GK-L---------  180 (305)
Q Consensus       121 ~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~----~---~~-~---------  180 (305)
                          ..+........ .  .....+......|.++....+|+.+++| .||  .+|.+.    .   ++ +         
T Consensus       154 ----lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~  226 (1311)
T KOG1900|consen  154 ----LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSV  226 (1311)
T ss_pred             ----EEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhH
Confidence                11111110000 0  0112233345568888877788766655 556  444432    1   11 1         


Q ss_pred             ----eeeecccc-CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          181 ----LKESDKET-GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       181 ----~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                          +..+.... .+..+|..++.......+.+-++.|+|.+||+..
T Consensus       227 ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  227 LSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             HHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence                11111122 4567999999998888999999999999999875

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.81  E-value=1.9  Score=35.45  Aligned_cols=158  Identities=15%  Similarity=0.024  Sum_probs=76.7

Q ss_pred             EcCCCeeeEEecCCCcceEEE-----EEcCCCcEEEEEeC-CC--cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEE
Q 021925           38 FADNGERLGTYRGHNGAVWCC-----DVSRDSMTLITGSA-DQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV  109 (305)
Q Consensus        38 ~~~~~~~~~~~~~~~~~v~~i-----~~~~~~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  109 (305)
                      |..+|..+.++......-..+     +|.+||+.|+.++. ||  .+.+.|+.+++..+....+.               
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g---------------   80 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG---------------   80 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS----------------
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC---------------
Confidence            667788887776544333333     56778876665554 44  46666888776554332110               


Q ss_pred             EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccC
Q 021925          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG  189 (305)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  189 (305)
                                                           .......++|+.+.++-......|+-.|+++.+....+.   .
T Consensus        81 -------------------------------------~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~---~  120 (386)
T PF14583_consen   81 -------------------------------------DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE---V  120 (386)
T ss_dssp             -------------------------------------B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE----
T ss_pred             -------------------------------------CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE---C
Confidence                                                 111123445666666554445677777887766544443   1


Q ss_pred             CccceEEEEE--cCCCCEEEEEe----------------------CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC
Q 021925          190 HKKTITSLAK--AADGSHFLTGS----------------------LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD  245 (305)
Q Consensus       190 ~~~~v~~~~~--~~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  245 (305)
                      ....+-...|  +.|+..++-.-                      -...|.-.|+++|+....+.....+..+.|+|...
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP  200 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence            2333322333  33555443221                      12347777888888877777888889999999876


Q ss_pred             cEEEe
Q 021925          246 HVCIG  250 (305)
Q Consensus       246 ~l~~~  250 (305)
                      .+++=
T Consensus       201 ~li~f  205 (386)
T PF14583_consen  201 TLIMF  205 (386)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            65553

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.75  E-value=0.27  Score=43.15  Aligned_cols=75  Identities=17%  Similarity=0.201  Sum_probs=46.0

Q ss_pred             CCCCEEEEeeCCCcEEEEeCCC----CcEeeeecc-----------c--------cCCccceEEEEEcC----CCCEEEE
Q 021925          156 PLNRTIISAGEDAIVRIWDTET----GKLLKESDK-----------E--------TGHKKTITSLAKAA----DGSHFLT  208 (305)
Q Consensus       156 ~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~-----------~--------~~~~~~v~~~~~~~----~~~~l~~  208 (305)
                      ++...++.+..||.+.......    +........           .        ......+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667788888999888887764    111111100           0        01123455666666    6788999


Q ss_pred             EeCCCeEEEEEcCCceEEEEEe
Q 021925          209 GSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       209 ~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      .+.|+++|+||+.+++++.+..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.74  E-value=1.9  Score=35.13  Aligned_cols=103  Identities=10%  Similarity=0.087  Sum_probs=55.7

Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE---eeeec-cccCCccceEEEEEcCC----CCEEEEEeCC-------
Q 021925          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKL---LKESD-KETGHKKTITSLAKAAD----GSHFLTGSLD-------  212 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~-~~~~~~~~v~~~~~~~~----~~~l~~~~~d-------  212 (305)
                      ..+.|+|.|+++.+++ ...|.|++++ ..+..   +..+. ...........++++|+    +.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4578999999887665 5699999999 44443   22231 12234567899999994    4433433321       


Q ss_pred             -CeEEEEEcCCc-------eEEE-EEee----CCCeeEEEecCCCCcEEEeeC
Q 021925          213 -KSAKLWDARTL-------ELIK-TYVT----ERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       213 -g~i~iwd~~~~-------~~~~-~~~~----~~~v~~~~~~~~~~~l~~~~~  252 (305)
                       ..|.-|.....       +.+. ....    ...-..++|.|||.+.++.++
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence             23444444332       1111 1111    233567999999965544433

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.66  E-value=1.3  Score=32.97  Aligned_cols=97  Identities=12%  Similarity=0.194  Sum_probs=62.8

Q ss_pred             CEEEEeeCCCcEEEEeCCC--CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC------eEEEE---EcC--Cce-
Q 021925          159 RTIISAGEDAIVRIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK------SAKLW---DAR--TLE-  224 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iw---d~~--~~~-  224 (305)
                      +.|+.+...+.|.+|++..  .+....+.    .-+.|..+.++..|++|+|--.+.      .+|+|   +..  ..+ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~  104 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP  104 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence            4454446668899999983  34455554    458899999999999999864422      45665   211  111 


Q ss_pred             --------------------EEEEE--eeCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925          225 --------------------LIKTY--VTERPVNAVTMSPLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       225 --------------------~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~  259 (305)
                                          ++..+  ....++.+++..|-..-|++|+++...++.
T Consensus       105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~  161 (215)
T PF14761_consen  105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFT  161 (215)
T ss_pred             EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEE
Confidence                                12212  244567889999887778888888765444

>PRK10115 protease 2; Provisional

Probab=94.63  E-value=3.4  Score=37.50  Aligned_cols=99  Identities=10%  Similarity=-0.023  Sum_probs=58.7

Q ss_pred             ceEEEEEcCCCCEEEEeeCC-----CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC------CcEEEEe
Q 021925           12 PLTYLKYNKDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD------QTAKLWN   80 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d------g~v~vwd   80 (305)
                      .+..+.++|||++|+.+...     ..|++-|+.+++.+...-....  ..++|.+|++.|+....+      ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            47778999999988875332     3688889988864322211211  569999988766554432      3577778


Q ss_pred             cCCC--CeeEEEeeCCC-ce-EEEEecCCceEEEeC
Q 021925           81 VETG--AQLFTFNFDSP-AR-SVDFAVGDKLAVITT  112 (305)
Q Consensus        81 ~~~~--~~~~~~~~~~~-v~-~~~~~~~~~~~~~~~  112 (305)
                      +.++  +....+..... .. ....+.++..+++..
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~  241 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHL  241 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEE
Confidence            8877  33333432222 22 223343666665443

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.51  E-value=0.41  Score=39.68  Aligned_cols=170  Identities=8%  Similarity=-0.015  Sum_probs=91.8

Q ss_pred             ecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE-Eee--CC----Cce-EEEEecCCceEEEeCCcceeee
Q 021925           48 YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT-FNF--DS----PAR-SVDFAVGDKLAVITTDPFMELN  119 (305)
Q Consensus        48 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~--~~----~v~-~~~~~~~~~~~~~~~~~~~~~~  119 (305)
                      +..-.+.|..+-..|||+.+..-+. .++.++++.+...... +-.  ++    .|. .+..-.++..+.+...     +
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~-----d  289 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE-----D  289 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC-----C
Confidence            3334466778888999998877665 6788998865432211 111  11    111 1111223333333322     2


Q ss_pred             eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE
Q 021925          120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (305)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  199 (305)
                      +.+..|-..+.........++.++-...++..+.-..+.+-+++-+..|++..+.....+.+-.-.    .-..+..+++
T Consensus       290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~----~~~~~~~~~~  365 (733)
T COG4590         290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER----AYQAPQLVAM  365 (733)
T ss_pred             CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh----hhcCcceeee
Confidence            222223222222222222333333333444444444445677888888999888765444432221    2335667899


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCceEEEE
Q 021925          200 AADGSHFLTGSLDKSAKLWDARTLELIKT  228 (305)
Q Consensus       200 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  228 (305)
                      ||++.+|++-. .|.++++.+++..+.-+
T Consensus       366 Sp~~~~Ll~e~-~gki~~~~l~Nr~Peis  393 (733)
T COG4590         366 SPNQAYLLSED-QGKIRLAQLENRNPEIS  393 (733)
T ss_pred             Ccccchheeec-CCceEEEEecCCCCCcc
Confidence            99999888754 56799998887655433

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.50  E-value=1.5  Score=33.05  Aligned_cols=142  Identities=13%  Similarity=0.039  Sum_probs=81.1

Q ss_pred             CcceEEEEEcCCCcEEEEEeCC---------CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925           52 NGAVWCCDVSRDSMTLITGSAD---------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (305)
Q Consensus        52 ~~~v~~i~~~~~~~~l~s~~~d---------g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (305)
                      +.+.+.-..+|+|++++-.-.|         |.++.|-.. ++....+..-.-...++|+.+.+.+......    +..+
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl----n~~V  182 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSL----NYEV  182 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccC----ceEE
Confidence            3456667789999885432222         445555432 2222233333444567888777777665432    2222


Q ss_pred             EEEEeecccC-CCCCceEEEEec----cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEE
Q 021925          123 HVKRIARDPA-DQGGESVLILKG----PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL  197 (305)
Q Consensus       123 ~~~~~~~~~~-~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  197 (305)
                      ..++...... ....+.+..++.    ..-..-.++...+|++.++.-..|+|...|..+|+.+..+..   ....++++
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsc  259 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---PTPQITSC  259 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---CCCceEEE
Confidence            2233111100 011122222222    111223455566788888888899999999999999998873   46789999


Q ss_pred             EEcC
Q 021925          198 AKAA  201 (305)
Q Consensus       198 ~~~~  201 (305)
                      +|--
T Consensus       260 cFgG  263 (310)
T KOG4499|consen  260 CFGG  263 (310)
T ss_pred             EecC
Confidence            9964

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=94.48  E-value=0.71  Score=29.11  Aligned_cols=46  Identities=22%  Similarity=0.101  Sum_probs=32.8

Q ss_pred             EeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925          209 GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       209 ~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      +..+|++.-||..+++..-....-.-.+.++++||+.+++++-...
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~   78 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR   78 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred             CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence            4457889999999988766666555679999999999988874433

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.47  E-value=1  Score=30.75  Aligned_cols=87  Identities=11%  Similarity=0.129  Sum_probs=60.6

Q ss_pred             EEEEEcCCCCEEEEeeCCCceEEEEcCCC--------eeeEEecCCCcceEEEEEcC-----CCcEEEEEeCCCcEEEEe
Q 021925           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNG--------ERLGTYRGHNGAVWCCDVSR-----DSMTLITGSADQTAKLWN   80 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~--------~~~~~~~~~~~~v~~i~~~~-----~~~~l~s~~~dg~v~vwd   80 (305)
                      ..-+|......|++++.-|.|.|++....        ..+..+. -...|++++-.+     +...|+.|+. ..|..||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence            34467677778999999999999986633        2334444 456677775433     2346777665 6799999


Q ss_pred             cCCCCeeEEEeeCCCceEEEEe
Q 021925           81 VETGAQLFTFNFDSPARSVDFA  102 (305)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~  102 (305)
                      ++....+.....+..+.++.+-
T Consensus        80 V~~N~d~Fyke~~DGvn~i~~g  101 (136)
T PF14781_consen   80 VENNSDLFYKEVPDGVNAIVIG  101 (136)
T ss_pred             cccCchhhhhhCccceeEEEEE
Confidence            9988777666677777777764

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.23  E-value=0.53  Score=41.36  Aligned_cols=73  Identities=25%  Similarity=0.273  Sum_probs=46.1

Q ss_pred             CCCCEEEEeeCCCceEEEEcCC----CeeeEEe-----------cC-----------CCcceEEEEEcC----CCcEEEE
Q 021925           20 KDGDLLFSCAKDHTPTVWFADN----GERLGTY-----------RG-----------HNGAVWCCDVSR----DSMTLIT   69 (305)
Q Consensus        20 ~~~~~l~s~~~dg~v~iw~~~~----~~~~~~~-----------~~-----------~~~~v~~i~~~~----~~~~l~s   69 (305)
                      ++...++.+..||.+.......    +......           .+           ..+.+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4666788888899888877654    2111111           00           123455666666    6679999


Q ss_pred             EeCCCcEEEEecCCCCeeEEEee
Q 021925           70 GSADQTAKLWNVETGAQLFTFNF   92 (305)
Q Consensus        70 ~~~dg~v~vwd~~~~~~~~~~~~   92 (305)
                      .+.|+++|+||+.+++++.....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEET
T ss_pred             EeCCCeEEEEECCCCeEEEEecc
Confidence            99999999999999999877653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.21  E-value=4  Score=36.64  Aligned_cols=145  Identities=12%  Similarity=0.116  Sum_probs=87.8

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeee------EEec----------------CCCcceEEEEEcC--CCcEEEEEeCCCcEE
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERL------GTYR----------------GHNGAVWCCDVSR--DSMTLITGSADQTAK   77 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~------~~~~----------------~~~~~v~~i~~~~--~~~~l~s~~~dg~v~   77 (305)
                      +++++.|. .+.|.||+.......      ..+.                .....|+.|....  +...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            55666655 779999987642221      1110                0112355555443  456888999999999


Q ss_pred             EEecC-------CC-------------CeeEEEeeCCCceEEEEe--cCCceEEEeCCcceeeeeeEEEEEeecccCCCC
Q 021925           78 LWNVE-------TG-------------AQLFTFNFDSPARSVDFA--VGDKLAVITTDPFMELNSAIHVKRIARDPADQG  135 (305)
Q Consensus        78 vwd~~-------~~-------------~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (305)
                      +|..+       ..             ++...+..+..+..++++  ...++++++++.     ..+.+.......... 
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs-----~~VTVFaf~l~~~r~-  201 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNS-----QEVTVFAFALVDERF-  201 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCC-----ceEEEEEEecccccc-
Confidence            99652       11             123344467788899998  788888888763     233333332211000 


Q ss_pred             CceEEEEeccCCCeeEEEEcCCC---C---EEEEeeCCCcEEEEeC
Q 021925          136 GESVLILKGPQGRINRAVWGPLN---R---TIISAGEDAIVRIWDT  175 (305)
Q Consensus       136 ~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~iwd~  175 (305)
                        ....-..+...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       202 --~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  202 --YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             --ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence              000011266778999997754   2   7788889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.20  E-value=2.9  Score=35.08  Aligned_cols=148  Identities=12%  Similarity=0.117  Sum_probs=86.3

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCC-----eeEEEeeCCCceEEEEec-----CCceEEEeCCcceeeeeeEEEEEeecccC
Q 021925           63 DSMTLITGSADQTAKLWNVETGA-----QLFTFNFDSPARSVDFAV-----GDKLAVITTDPFMELNSAIHVKRIARDPA  132 (305)
Q Consensus        63 ~~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (305)
                      +...|++||..|.++|++...+.     .+...+.+.+|..+..-+     +...+++-....      +.++.+.....
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~k------l~vY~v~~~~g  109 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRK------LSVYSVSLVDG  109 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCE------EEEEEEEecCC
Confidence            34589999999999999975443     455666788888777543     233444444322      22333321111


Q ss_pred             C---CCCceEEEEeccC--CCeeEEEEcCC-----CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC
Q 021925          133 D---QGGESVLILKGPQ--GRINRAVWGPL-----NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD  202 (305)
Q Consensus       133 ~---~~~~~~~~~~~~~--~~i~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  202 (305)
                      .   ...-.+.....|.  .....++.-|-     ..++..=+.||.+.+++-+.-...+.+.. .-..+   .+++.+.
T Consensus       110 ~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPg---Pl~Y~~~  185 (418)
T PF14727_consen  110 TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPG---PLCYCPR  185 (418)
T ss_pred             CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCc---CeEEeec
Confidence            1   1111222333333  23334444442     25778889999999999765443343331 11233   3577777


Q ss_pred             CCEEEEEeCCCeEEEEEc
Q 021925          203 GSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       203 ~~~l~~~~~dg~i~iwd~  220 (305)
                      -..|++++.+..+.-|..
T Consensus       186 tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  186 TDSFVTASSSWTLECYKY  203 (418)
T ss_pred             CCEEEEecCceeEEEecH
Confidence            778888888888888854

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.16  E-value=4.6  Score=37.20  Aligned_cols=97  Identities=18%  Similarity=0.132  Sum_probs=63.1

Q ss_pred             CCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcE-----eeeeccccC-------CccceEEEEEcCCCCEEEEEeCC
Q 021925          146 QGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKL-----LKESDKETG-------HKKTITSLAKAADGSHFLTGSLD  212 (305)
Q Consensus       146 ~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d  212 (305)
                      ..+...++|+|.. +.||.....|...|||+.....     ........+       ....-..+.|.++.+.|+.++ .
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r  223 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-R  223 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-C
Confidence            3467789999854 6899999999999999921111     111100001       113344788988877888776 4


Q ss_pred             CeEEEEEcCCceEEE---EEeeCCCeeEEEecCC
Q 021925          213 KSAKLWDARTLELIK---TYVTERPVNAVTMSPL  243 (305)
Q Consensus       213 g~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~  243 (305)
                      ..+.++|+++.....   .......|.++.-+|.
T Consensus       224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~  257 (765)
T PF10214_consen  224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD  257 (765)
T ss_pred             CceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence            458999998776533   2224567888888877

These proteins are found in fungi.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.08  E-value=2.4  Score=35.39  Aligned_cols=107  Identities=8%  Similarity=0.043  Sum_probs=73.0

Q ss_pred             ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec-cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      ...++|.++.||+|++.+|.--.+..|.+++....+...... ........|....|+.+ .-+|..+..| +.+|....
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            345699999999999999999999999999985433322221 11133456888999876 4566666555 66665443


Q ss_pred             c-eEEEEEe-eCCCeeEEEecCCCCcEEEeeC
Q 021925          223 L-ELIKTYV-TERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       223 ~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                      . +.++..+ +...|+-..|.++-+.++.+++
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            2 2333333 6667888899999888776655

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.05  E-value=1.9  Score=32.22  Aligned_cols=151  Identities=9%  Similarity=0.073  Sum_probs=81.7

Q ss_pred             EEEEEeCCCcEEEEecC--CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee-eeeEEEEEeecccCCCC-------
Q 021925           66 TLITGSADQTAKLWNVE--TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-NSAIHVKRIARDPADQG-------  135 (305)
Q Consensus        66 ~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------  135 (305)
                      .|..+...+.|.+|++.  ..+....+..-+.+..+.++..|+++++--...... ...++.+--++......       
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi  109 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI  109 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence            44443556789999987  445677777778999999999999998865432211 00111111111100000       


Q ss_pred             -------------CceEEEEe-ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE-eee-----ecc-ccCC--cc
Q 021925          136 -------------GESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKE-----SDK-ETGH--KK  192 (305)
Q Consensus       136 -------------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~-----~~~-~~~~--~~  192 (305)
                                   ......++ +-..++.+++..|-..-|+.|+. +.+.+|.+..... ...     +.. .-.|  .-
T Consensus       110 aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~  188 (215)
T PF14761_consen  110 AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNF  188 (215)
T ss_pred             cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheecCc
Confidence                         11122222 22446788888886555666654 6788998865433 111     110 0011  22


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          193 TITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      .+..+++.  +.++|..+ +-.+++..+
T Consensus       189 ~p~~v~ic--~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  189 KPTQVAIC--EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             eEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence            34556665  44777666 455666654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.03  E-value=2.4  Score=33.48  Aligned_cols=223  Identities=13%  Similarity=0.118  Sum_probs=120.6

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcC------CC-eeeEEecC-----CCcceEEEEEcCCCc------------EEE
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFAD------NG-ERLGTYRG-----HNGAVWCCDVSRDSM------------TLI   68 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~~------------~l~   68 (305)
                      -..|+++|.+..-++....+...+||..      .. ..+-++..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4578999999888887778899999976      12 22333331     234577888864322            367


Q ss_pred             EEeCCCcEEEEecCCCCe-----eEEEe--eCCCc-eEEEEec--CCceEEEeCCcceeeeeeEEEEEeecccCCCC---
Q 021925           69 TGSADQTAKLWNVETGAQ-----LFTFN--FDSPA-RSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQG---  135 (305)
Q Consensus        69 s~~~dg~v~vwd~~~~~~-----~~~~~--~~~~v-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  135 (305)
                      .+++||+|.-|...-+..     ...+.  ....+ ..+++..  .+..+..+.-    ....+.+.+-........   
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF----~~g~IDVFd~~f~~~~~~g~F  180 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF----RQGRIDVFKGSFRPPPLPGSF  180 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc----CCCceEEecCccccccCCCCc
Confidence            788999999998533222     11122  11222 2334332  2344444321    122233222211100000   


Q ss_pred             --------C--ceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC----
Q 021925          136 --------G--ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA----  201 (305)
Q Consensus       136 --------~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~----  201 (305)
                              .  -.++.+ +..-.|+-..-.+++..=+.|.--|.|-++|+. ++.++++... +.-...+.|+..|    
T Consensus       181 ~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-GRLNAPWGLAIAPESFG  257 (336)
T ss_pred             cCCCCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-CcccCCceeeeChhhhC
Confidence                    0  000111 011112222223333333344455799999985 7788877422 3445566777765    


Q ss_pred             --CCCEEEEEeCCCeEEEEEcCCceEEEEEee--C-----CCeeEEEecC
Q 021925          202 --DGSHFLTGSLDKSAKLWDARTLELIKTYVT--E-----RPVNAVTMSP  242 (305)
Q Consensus       202 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~-----~~v~~~~~~~  242 (305)
                        .+.+|+---.||+|..+|..+++.+..+..  .     ..++.++|..
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence              455565555699999999999988877762  2     2357788765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=93.51  E-value=4.2  Score=34.49  Aligned_cols=31  Identities=23%  Similarity=0.305  Sum_probs=25.2

Q ss_pred             cceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          192 KTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      ..|.++...+..+.|++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            4489999999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.36  E-value=5.4  Score=37.80  Aligned_cols=31  Identities=10%  Similarity=0.106  Sum_probs=26.2

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCC
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADN   41 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~   41 (305)
                      .....++|+|....+|.++..|.|+++-...
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccc
Confidence            3566789999999999999999999996543

>PHA02790 Kelch-like protein; Provisional

Probab=93.29  E-value=5  Score=34.71  Aligned_cols=63  Identities=5%  Similarity=-0.046  Sum_probs=33.1

Q ss_pred             CCCEEEEeeCCC-----ceEEEEcCCCeeeE--EecCCCcceEEEEEcCCCcEEEEEeCC--CcEEEEecCCCC
Q 021925           21 DGDLLFSCAKDH-----TPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD--QTAKLWNVETGA   85 (305)
Q Consensus        21 ~~~~l~s~~~dg-----~v~iw~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d--g~v~vwd~~~~~   85 (305)
                      ++..++.||.++     .+..||..+++...  .+....... +++ .-++...+.||.+  ..+..||..+++
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~  342 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAA  342 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCe
Confidence            445567777543     46678877665322  121111111 122 2366677777754  357778876553

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.25  E-value=0.94  Score=42.63  Aligned_cols=149  Identities=13%  Similarity=0.101  Sum_probs=90.0

Q ss_pred             eCCCceEEEEcCCCeeeEEecCCCcceEEEEEc--------CCCcEEEEEeCCCcEEEEecC----CCCe---e--EEEe
Q 021925           29 AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--------RDSMTLITGSADQTAKLWNVE----TGAQ---L--FTFN   91 (305)
Q Consensus        29 ~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~--------~~~~~l~s~~~dg~v~vwd~~----~~~~---~--~~~~   91 (305)
                      +-|+.+.+|+.+++.....+.+-+..|..+..-        |.=++++..+.--.|.++-+.    ++..   .  .++.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            458899999999988888888777777776642        222344443443456666432    1111   1  1222


Q ss_pred             -eCCCceEEEEecCCceEEEeCCcceeeee--eEEEEEeecccCCC--------CCceEEEEe-ccCCCeeEEEEcCCCC
Q 021925           92 -FDSPARSVDFAVGDKLAVITTDPFMELNS--AIHVKRIARDPADQ--------GGESVLILK-GPQGRINRAVWGPLNR  159 (305)
Q Consensus        92 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~i~~~~~~~~~~  159 (305)
                       .+..+.++....+|+.++++.++......  ....|--.+.....        -...+..+. .+..+|..+......+
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~  255 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN  255 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence             35678889988899999988765221110  00011110000000        001122223 5678999999999889


Q ss_pred             EEEEeeCCCcEEEEeCCC
Q 021925          160 TIISAGEDAIVRIWDTET  177 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~  177 (305)
                      .+.+-++.|.|.+||+..
T Consensus       256 IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  256 ILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeeeccCceEEEEEccC
Confidence            999999999999999976

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.23  E-value=4.4  Score=33.93  Aligned_cols=225  Identities=9%  Similarity=-0.003  Sum_probs=101.0

Q ss_pred             CCCEEEEee-CCCceEEEEcCC----CeeeEEecC---CC----cceEEEEEcCCCcEEEEEeC------CCcEEEEecC
Q 021925           21 DGDLLFSCA-KDHTPTVWFADN----GERLGTYRG---HN----GAVWCCDVSRDSMTLITGSA------DQTAKLWNVE   82 (305)
Q Consensus        21 ~~~~l~s~~-~dg~v~iw~~~~----~~~~~~~~~---~~----~~v~~i~~~~~~~~l~s~~~------dg~v~vwd~~   82 (305)
                      +.++|+..+ ..+.|+|.|+.+    .+..+.++.   +.    ..-..+-..|+|+.++|+-.      -|-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456676665 678999999873    345555542   11    22334445678988887532      2558888888


Q ss_pred             CCCeeEEEeeC----CCceEEEEecCCceEEEeCCc---------------ceeeeeeEEEEEeecccCCCCCceEEEEe
Q 021925           83 TGAQLFTFNFD----SPARSVDFAVGDKLAVITTDP---------------FMELNSAIHVKRIARDPADQGGESVLILK  143 (305)
Q Consensus        83 ~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (305)
                      +.+.......+    ..-..+-+.|..+.++++.=.               ...+-..+.+|++..      .+.++.+.
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~------r~~~Q~id  239 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST------RKLLQTID  239 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT------TEEEEEEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC------CcEeeEEe
Confidence            88877777642    234567788887777775310               112334567777643      34455554


Q ss_pred             ccC--CCeeEEEEc--CCCCEEEEee-CCCcEEEEeC-CCCc----Eeeeeccc--------------cCCccceEEEEE
Q 021925          144 GPQ--GRINRAVWG--PLNRTIISAG-EDAIVRIWDT-ETGK----LLKESDKE--------------TGHKKTITSLAK  199 (305)
Q Consensus       144 ~~~--~~i~~~~~~--~~~~~l~~~~-~dg~i~iwd~-~~~~----~~~~~~~~--------------~~~~~~v~~~~~  199 (305)
                      -..  .....+.|.  |+..+=++++ -.++|..|-. ..++    .+..+...              ..-..-++.+..
T Consensus       240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i  319 (461)
T PF05694_consen  240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI  319 (461)
T ss_dssp             S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred             cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence            332  224455554  4444444333 3555655543 3332    12222110              001345799999


Q ss_pred             cCCCCEEEEEe-CCCeEEEEEcCCc---eEEEEEeeCCC-----------------eeEEEecCCCCcEEEee
Q 021925          200 AADGSHFLTGS-LDKSAKLWDARTL---ELIKTYVTERP-----------------VNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       200 ~~~~~~l~~~~-~dg~i~iwd~~~~---~~~~~~~~~~~-----------------v~~~~~~~~~~~l~~~~  251 (305)
                      |.|.++|..++ .+|.|+.||+...   +++.++..++.                 ...+..|-||+.|.+.+
T Consensus       320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            99999987766 5899999999863   44444442222                 25566777777666653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.95  E-value=4.9  Score=33.72  Aligned_cols=152  Identities=13%  Similarity=0.188  Sum_probs=86.8

Q ss_pred             EEEEEcCCCCEEEEeeCCCceEEEEcCC--CeeeEEe-cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           14 TYLKYNKDGDLLFSCAKDHTPTVWFADN--GERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~--~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      +.+-|....+.|++. ..|.+.=|-+..  ....-.+ ....++|.++.|++|.+.||+--.|++|.+++....+.....
T Consensus        26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            344555444444433 334445554332  1222222 235679999999999999999999999999998544332222


Q ss_pred             e-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           91 N-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        91 ~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      .     ....+....|+..-...++...+       +.++...     .....++..+.|.-.|.-..|.++.+.++.++
T Consensus       105 ~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-------~e~y~v~-----pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSSTEIAFITDQG-------IEFYQVL-----PEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             HHHhccCcceeEEEEEecCeeEEEEecCC-------eEEEEEc-----hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            2     23347788888775555544332       1222211     12234455667778888888888887554433


Q ss_pred             --CCCcEEEEeCCCC
Q 021925          166 --EDAIVRIWDTETG  178 (305)
Q Consensus       166 --~dg~i~iwd~~~~  178 (305)
                        ....+.=+-++++
T Consensus       173 ~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  173 TVLENVLNPFHFRAG  187 (657)
T ss_pred             cccccccccEEEeec
Confidence              3344444444443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.92  E-value=0.24  Score=43.58  Aligned_cols=95  Identities=15%  Similarity=0.230  Sum_probs=63.7

Q ss_pred             CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE
Q 021925          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  226 (305)
                      ..++++.-+|.+..++.++.||.|++|+....+..+...    ...+-..+.|...|  |++..+|.++.-|. ++|-..
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~----~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvq   87 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE----EAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQ   87 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh----hcCCccceeeeccc--eEEEeccchhheee-ccCcch
Confidence            346678888999999999999999999987655433332    22333445565443  77888899888886 445444


Q ss_pred             EEEe----eCCCeeEEEecCCCCcEE
Q 021925          227 KTYV----TERPVNAVTMSPLLDHVC  248 (305)
Q Consensus       227 ~~~~----~~~~v~~~~~~~~~~~l~  248 (305)
                      +++.    ......++...|..+-++
T Consensus        88 qqfdyndqsekefss~~cdptaqnvv  113 (1636)
T KOG3616|consen   88 QQFDYNDQSEKEFSSILCDPTAQNVV  113 (1636)
T ss_pred             hhccccchhhhhccceecCchhhhhh
Confidence            4444    334566777778766544

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.59  E-value=4.8  Score=32.73  Aligned_cols=102  Identities=16%  Similarity=0.247  Sum_probs=64.3

Q ss_pred             CeeEEEEcCCCCEEEEeeCC------CcEEEEeCCCCcEeeeeccc------------cCCccceEEEEEcCCCCEEEEE
Q 021925          148 RINRAVWGPLNRTIISAGED------AIVRIWDTETGKLLKESDKE------------TGHKKTITSLAKAADGSHFLTG  209 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~l~~~  209 (305)
                      ...++++.+++.++++.=.+      ..|+.++.. ++....+..+            ...+...-+|+++|+|+.|+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            34567776777766665556      788888876 6655544211            1245678899999999976665


Q ss_pred             eC-----CC--e-------EEEE--EcCC-ceEEEEEe--e--------CCCeeEEEecCCCCcEEEe
Q 021925          210 SL-----DK--S-------AKLW--DART-LELIKTYV--T--------ERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       210 ~~-----dg--~-------i~iw--d~~~-~~~~~~~~--~--------~~~v~~~~~~~~~~~l~~~  250 (305)
                      .+     |+  .       ++++  |..+ ++....+.  .        ...+..+.+-+++++++.-
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence            43     22  1       4444  5444 33344332  1        3568899999999977763

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.53  E-value=0.013  Score=48.39  Aligned_cols=138  Identities=12%  Similarity=0.170  Sum_probs=89.7

Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC
Q 021925           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD  133 (305)
Q Consensus        54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (305)
                      ......|-|++.-++.++.+..|..||-. ++.......                                         
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~-----------------------------------------   73 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP-----------------------------------------   73 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC-----------------------------------------
Confidence            33455677777668888888888888843 333332221                                         


Q ss_pred             CCCceEEEEeccCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC
Q 021925          134 QGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD  212 (305)
Q Consensus       134 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  212 (305)
                                  .+....++|..++..++ .+-..+.+.+||+.+.. -.+++....+....  +.|++....++.+...
T Consensus        74 ------------tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE~gg~~s~sl--l~wsKg~~el~ig~~~  138 (615)
T KOG2247|consen   74 ------------TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLESGGTSSKSL--LAWSKGTPELVIGNNA  138 (615)
T ss_pred             ------------chhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHhccCcchHHH--HhhccCCccccccccc
Confidence                        22233455555554333 44557899999997543 22232211232333  7899999999999999


Q ss_pred             CeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEE
Q 021925          213 KSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVC  248 (305)
Q Consensus       213 g~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~  248 (305)
                      |.+.+++..+.+.+.... |..++.++++.+.+..+.
T Consensus       139 gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  139 GNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             cceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence            999999988776655554 788899999999875444

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.25  E-value=4.9  Score=32.00  Aligned_cols=192  Identities=10%  Similarity=0.057  Sum_probs=98.5

Q ss_pred             ceEEEEEcCCCCEEEE--eeC----------CCceEEEEcCCCeeeEEecC------CCcceEEEEEcCC-C----cEEE
Q 021925           12 PLTYLKYNKDGDLLFS--CAK----------DHTPTVWFADNGERLGTYRG------HNGAVWCCDVSRD-S----MTLI   68 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s--~~~----------dg~v~iw~~~~~~~~~~~~~------~~~~v~~i~~~~~-~----~~l~   68 (305)
                      .|..+...+++++-+.  |.-          .-.|.+||+.+++.++++.-      ..+.+..+.+... +    .+..
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            3566777777664332  211          12788999999998887752      2456788888662 1    2333


Q ss_pred             -EEeCCCcEEEEecCCCCeeEEEee--------------------CCCceEEEEec---CCceEEEeCCcceeeeeeEEE
Q 021925           69 -TGSADQTAKLWNVETGAQLFTFNF--------------------DSPARSVDFAV---GDKLAVITTDPFMELNSAIHV  124 (305)
Q Consensus        69 -s~~~dg~v~vwd~~~~~~~~~~~~--------------------~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  124 (305)
                       +=+..+-|.|+|+.+++.-.....                    ...+..++.+|   +++.+....-      .....
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l------ss~~l  155 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL------SSRKL  155 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET------T-SEE
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeC------CCCcE
Confidence             333456799999998865444431                    12233333333   2222322210      11122


Q ss_pred             EEeecccCC--CC------CceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCc---EeeeeccccCCccc
Q 021925          125 KRIARDPAD--QG------GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK---LLKESDKETGHKKT  193 (305)
Q Consensus       125 ~~~~~~~~~--~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~  193 (305)
                      +.+......  ..      ...+..+....+....++.+++|..+++--..+.|..||..+.-   ....+......-..
T Consensus       156 y~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~  235 (287)
T PF03022_consen  156 YRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQW  235 (287)
T ss_dssp             EEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSS
T ss_pred             EEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeec
Confidence            222211100  00      01122332222466778999999988888889999999988621   12222211122457


Q ss_pred             eEEEEEcC--CCCEEEEE
Q 021925          194 ITSLAKAA--DGSHFLTG  209 (305)
Q Consensus       194 v~~~~~~~--~~~~l~~~  209 (305)
                      +..+.+.+  +|.+.+..
T Consensus       236 pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  236 PDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEEEEE-T--TS-EEEEE
T ss_pred             cceeeeccccCceEEEEE
Confidence            78888888  66554444

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.16  E-value=0.034  Score=46.01  Aligned_cols=175  Identities=14%  Similarity=0.093  Sum_probs=103.2

Q ss_pred             EEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCC
Q 021925           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP   95 (305)
Q Consensus        16 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~   95 (305)
                      +.|++.+..++.+...|.+.|++..+.+.......|..+++++++.+.+ +.+.++.|..+.+-... ++........+.
T Consensus       123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qe-geta~ltevgge  200 (615)
T KOG2247|consen  123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQE-GETASLTEVGGE  200 (615)
T ss_pred             HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHhhhc-cceeeeeeccCc
Confidence            5788888888888889999999987776665555699999999999876 56777777776665543 333333332222


Q ss_pred             ceEEE--------EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925           96 ARSVD--------FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (305)
Q Consensus        96 v~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  167 (305)
                      ...++        |...+..+...-.+.....       ..... ....+....++...+.+.|..|-.||. |..+..-
T Consensus       201 pdnm~~~y~k~n~w~kage~m~sVvsgKkhl~-------yak~n-E~D~pval~fq~~~gni~cyrwylDg~-i~igf~a  271 (615)
T KOG2247|consen  201 PDNMDFFYGKVNGWGKAGETMVSVVSGKKHLM-------YAKYN-ELDEPVALQFQEKYGNIHCYRWYLDGY-ILIGFDA  271 (615)
T ss_pred             cchhhhheeeeeccccccceeeeeeecHHHHH-------HHhhc-CCCCccceEeeecCCceeEEEEecccc-ccccccc
Confidence            22222        1112222221111000000       00000 111122236667778899999988875 5556666


Q ss_pred             CcEEEEeCCCCcEeeeeccccCCccceEEEEEcC
Q 021925          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAA  201 (305)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  201 (305)
                      |.|..-...+++....+.....+.+.+..++.|.
T Consensus       272 g~iV~iS~h~aeLgaeffqkldy~~aLqsiavsq  305 (615)
T KOG2247|consen  272 GYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQ  305 (615)
T ss_pred             eeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHH
Confidence            7777777777776655543335666666666554

>PRK13684 Ycf48-like protein; Provisional

Probab=92.10  E-value=5.7  Score=32.45  Aligned_cols=105  Identities=10%  Similarity=0.110  Sum_probs=60.8

Q ss_pred             CCCeeEEEEcCCCCEEEEeeCCCcEEE-EeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925          146 QGRINRAVWGPLNRTIISAGEDAIVRI-WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  224 (305)
                      .+.+..+.+.|++.+++++. .|.+.. +|- .++.-.....  .....++++.+.++++.++++ ..|.+++=....++
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~--~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQR--NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeC--CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence            45678899999887665554 465443 221 2222222221  345688999999998876655 56766543334443


Q ss_pred             EEEEEe-----eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          225 LIKTYV-----TERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       225 ~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      .-....     ....+.++.+.|+++.++++ .++..
T Consensus       247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v  282 (334)
T PRK13684        247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTL  282 (334)
T ss_pred             ccccccCCccccccceeeEEEcCCCCEEEEc-CCCeE
Confidence            322222     12347888999988765554 44543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.09  E-value=4.7  Score=31.44  Aligned_cols=219  Identities=12%  Similarity=0.004  Sum_probs=133.8

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-   91 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-   91 (305)
                      -..++-.|||..-+++...+.|---|..+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+ +.++. 
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e-vt~f~l  141 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE-VTRFPL  141 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc-eEEeec
Confidence            4566677788777777777777777777887665544555556778888888766654333 34445544443 23333 


Q ss_pred             ----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-CCCeeEEEEcCCCCEEEEeeC
Q 021925           92 ----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAGE  166 (305)
Q Consensus        92 ----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~  166 (305)
                          .........|.+.|.+-+++..+......             .....+..+... ....+.++..|+|..-++.-.
T Consensus       142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLd-------------Pa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla  208 (353)
T COG4257         142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLD-------------PARNVISVFPAPQGGGPYGICATPDGSVWYASLA  208 (353)
T ss_pred             ccccCCCcccceeeCCCccEEEeeccccceecC-------------cccCceeeeccCCCCCCcceEECCCCcEEEEecc
Confidence                34456677888888888887643322111             011223333332 234577889999988777777


Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEEEecCC
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPL  243 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~  243 (305)
                      +..|-..|..++. -..+.........-..+--+|.|+.-++....+.+..+|..... -.++.   .+..-.++.....
T Consensus       209 gnaiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~  286 (353)
T COG4257         209 GNAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRH  286 (353)
T ss_pred             ccceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccC
Confidence            7888888887763 33343333434455666677888888887778888888866543 23333   3334455555555


Q ss_pred             CCcEE
Q 021925          244 LDHVC  248 (305)
Q Consensus       244 ~~~l~  248 (305)
                      ++.-.
T Consensus       287 grVW~  291 (353)
T COG4257         287 GRVWL  291 (353)
T ss_pred             CcEEe
Confidence            55443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.02  E-value=2  Score=31.15  Aligned_cols=31  Identities=13%  Similarity=0.057  Sum_probs=24.9

Q ss_pred             ceEEEEEcCCC------cEEEEEeCCCcEEEEecCCC
Q 021925           54 AVWCCDVSRDS------MTLITGSADQTAKLWNVETG   84 (305)
Q Consensus        54 ~v~~i~~~~~~------~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+..++|||.|      -.|++.+.++.|.||.....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            78999999944      26788899999999986643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.77  E-value=1  Score=23.07  Aligned_cols=31  Identities=13%  Similarity=0.047  Sum_probs=20.1

Q ss_pred             cCCCcceEEEEEcCCCcEEEEEeC-C--CcEEEE
Q 021925           49 RGHNGAVWCCDVSRDSMTLITGSA-D--QTAKLW   79 (305)
Q Consensus        49 ~~~~~~v~~i~~~~~~~~l~s~~~-d--g~v~vw   79 (305)
                      ....+.-....|+|||+.|+-++. +  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334556788999999998876554 4  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.58  E-value=0.69  Score=39.00  Aligned_cols=59  Identities=10%  Similarity=0.090  Sum_probs=48.5

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      -++|+|+..|.|++||.-..+....+.+-...|..+....+|+++++.+. ..+.+-|++
T Consensus       574 GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         574 GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            48999999999999997655566667778889999999999998877666 578888764

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.53  E-value=0.17  Score=45.36  Aligned_cols=69  Identities=12%  Similarity=0.128  Sum_probs=46.0

Q ss_pred             ceEEEEEcC---CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEE-----------EcCCCcEEEEEeCCCcEE
Q 021925           12 PLTYLKYNK---DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD-----------VSRDSMTLITGSADQTAK   77 (305)
Q Consensus        12 ~v~~~~~~~---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~-----------~~~~~~~l~s~~~dg~v~   77 (305)
                      .+.-+.|.|   +..++..+-.++++++.+..+... ..+.+|...+..++           .+|||+.++.++.||.++
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~  260 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG  260 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence            345556655   556777778888998877654332 44555776666654           467777777777777777


Q ss_pred             EEec
Q 021925           78 LWNV   81 (305)
Q Consensus        78 vwd~   81 (305)
                      .|.+
T Consensus       261 f~Qi  264 (1283)
T KOG1916|consen  261 FYQI  264 (1283)
T ss_pred             eeee
Confidence            7764

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.33  E-value=12  Score=34.62  Aligned_cols=93  Identities=17%  Similarity=0.020  Sum_probs=63.6

Q ss_pred             cceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCe-----eeEEecCCC----------cceEEEEEcCCCcEEEEEeCCC
Q 021925           11 RPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHN----------GAVWCCDVSRDSMTLITGSADQ   74 (305)
Q Consensus        11 ~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~-----~~~~~~~~~----------~~v~~i~~~~~~~~l~s~~~dg   74 (305)
                      .+..+++|+| +.+.||.....|.-.||++....     .......+.          +.-..+.|.++-+.|+.++. .
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence            3577899999 66799999999999999992111     111111111          22347889888888888776 5


Q ss_pred             cEEEEecCCCCeeE---EEeeCCCceEEEEecC
Q 021925           75 TAKLWNVETGAQLF---TFNFDSPARSVDFAVG  104 (305)
Q Consensus        75 ~v~vwd~~~~~~~~---~~~~~~~v~~~~~~~~  104 (305)
                      .+.++|+++.....   .......+..+.-++.
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~  257 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD  257 (765)
T ss_pred             ceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence            79999998776533   2225567778877776

These proteins are found in fungi.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=90.70  E-value=0.91  Score=23.21  Aligned_cols=30  Identities=23%  Similarity=0.283  Sum_probs=24.7

Q ss_pred             EEEEEeCCCeEEEEEcCCceEEEEEeeCCC
Q 021925          205 HFLTGSLDKSAKLWDARTLELIKTYVTERP  234 (305)
Q Consensus       205 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  234 (305)
                      .+..++.+|.++-.|.++|+.+..++....
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~   31 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTGPP   31 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence            356668999999999999999998885443

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.52  E-value=1.4  Score=22.51  Aligned_cols=29  Identities=17%  Similarity=0.391  Sum_probs=19.1

Q ss_pred             cCCCeeEEEEcCCCCEEEEeeC-C--CcEEEE
Q 021925          145 PQGRINRAVWGPLNRTIISAGE-D--AIVRIW  173 (305)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~~~~~-d--g~i~iw  173 (305)
                      ....-....|+|||+.|+-++. +  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445677899999998886553 4  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.25  E-value=8.8  Score=31.24  Aligned_cols=105  Identities=12%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCc------eEEEEcCC--C--eeeE-----EecCCCc--------ceEEEEEcCCCcE
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHT------PTVWFADN--G--ERLG-----TYRGHNG--------AVWCCDVSRDSMT   66 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~------v~iw~~~~--~--~~~~-----~~~~~~~--------~v~~i~~~~~~~~   66 (305)
                      -+.+..+.+.+++..+++.+.+|.      +...++..  +  ..+.     .+..-.+        ..-+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356889999976666666677777      55555443  1  1111     1111111        3347888778877


Q ss_pred             EEEEeCC------CcEEEEecCCCCeeEEEe----------------eCCCceEEEEecCCceEEEeCCcc
Q 021925           67 LITGSAD------QTAKLWNVETGAQLFTFN----------------FDSPARSVDFAVGDKLAVITTDPF  115 (305)
Q Consensus        67 l~s~~~d------g~v~vwd~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~~~~~~~~  115 (305)
                      +++.-.+      ..|..++.. |+....+.                .+.....++++|++..++++....
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~  168 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESP  168 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcc
Confidence            7776556      678888866 65544442                233467899999999666665543

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.19  E-value=3.3  Score=35.31  Aligned_cols=77  Identities=8%  Similarity=0.039  Sum_probs=53.9

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEE---------cCCCeeeEE---e--------cCCCcceEEEEEcCCC---cEE
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWF---------ADNGERLGT---Y--------RGHNGAVWCCDVSRDS---MTL   67 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~---------~~~~~~~~~---~--------~~~~~~v~~i~~~~~~---~~l   67 (305)
                      -.|..+..++.|..++-+|.+|.+.++=         +++|+....   +        ....-.+..++|+|+.   ..|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            3577888999999999999999877652         223432211   1        1122357788999965   577


Q ss_pred             EEEeCCCcEEEEecCCCCee
Q 021925           68 ITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus        68 ~s~~~dg~v~vwd~~~~~~~   87 (305)
                      ..-+.|..+++||+.+.+.+
T Consensus       184 ~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEecCcEEEEEecCCcchh
Confidence            78888999999998766544

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.17  E-value=7.9  Score=30.58  Aligned_cols=161  Identities=9%  Similarity=0.011  Sum_probs=89.0

Q ss_pred             CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecc
Q 021925           52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD  130 (305)
Q Consensus        52 ~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (305)
                      .+-+..+.++.+  +...+..+.-++|.|+.+........ .+..-..-.+.-.|+++.++.-     .....+.++.. 
T Consensus        86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadl-----ddgfLivdvsd-  157 (370)
T COG5276          86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADL-----DDGFLIVDVSD-  157 (370)
T ss_pred             hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeec-----cCcEEEEECCC-
Confidence            345667777644  66667777779999998776544443 1111233334445555555431     11122222221 


Q ss_pred             cCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe
Q 021925          131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS  210 (305)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  210 (305)
                        ...................++.|  |++-..+..|+-+.+-|+.......-+... .....+.++..+++.-+++.. 
T Consensus       158 --pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~vvy-  231 (370)
T COG5276         158 --PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYLVVY-  231 (370)
T ss_pred             --CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEEEEc-
Confidence              12223334444455555667776  677778888999999999865433322211 233467788888775554443 


Q ss_pred             CCCeEEEEEcCCceEEE
Q 021925          211 LDKSAKLWDARTLELIK  227 (305)
Q Consensus       211 ~dg~i~iwd~~~~~~~~  227 (305)
                       +--+.+-|..+.+...
T Consensus       232 -~egvlivd~s~~ssp~  247 (370)
T COG5276         232 -DEGVLIVDVSGPSSPT  247 (370)
T ss_pred             -ccceEEEecCCCCCce
Confidence             3336777766555333

>smart00564 PQQ beta-propeller repeat

Probab=89.46  E-value=1.2  Score=21.62  Aligned_cols=25  Identities=36%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             EEEEEeCCCeEEEEEcCCceEEEEE
Q 021925          205 HFLTGSLDKSAKLWDARTLELIKTY  229 (305)
Q Consensus       205 ~l~~~~~dg~i~iwd~~~~~~~~~~  229 (305)
                      .++.++.+|.+..+|.++|+.+.++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5778888999999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=89.15  E-value=13  Score=31.72  Aligned_cols=63  Identities=17%  Similarity=0.229  Sum_probs=41.5

Q ss_pred             EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE--eeeeccc--cCCccceEEEEEcCCC
Q 021925          141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKE--TGHKKTITSLAKAADG  203 (305)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~--~~~~~~v~~~~~~~~~  203 (305)
                      .+...-...+.|+|.|++++|++--..|.|++++..++..  +..+...  .........|+++|+-
T Consensus        24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3444456778999999998777665569999998665432  2222211  1135678899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=88.83  E-value=20  Score=33.42  Aligned_cols=104  Identities=13%  Similarity=0.169  Sum_probs=67.1

Q ss_pred             eeEEEEcCC-CCEEEEee----------CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925          149 INRAVWGPL-NRTIISAG----------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (305)
Q Consensus       149 i~~~~~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  217 (305)
                      +.++.|..| +.+++.|.          ..|.|.++.....+.++...+. .-.+.+.++..- +|+++|.  -...|++
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~f-ngkllA~--In~~vrL  852 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVEF-NGKLLAG--INQSVRL  852 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhhh-CCeEEEe--cCcEEEE
Confidence            445557776 56777665          2477888887764444433211 123455554432 5665554  4667999


Q ss_pred             EEcCCceEEEEE-eeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          218 WDARTLELIKTY-VTERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       218 wd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      |+..+.+.++.- .+..++..+...-.|..+++|.-.+..
T Consensus       853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Si  892 (1096)
T KOG1897|consen  853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSI  892 (1096)
T ss_pred             EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceE
Confidence            999888555443 377788999999999999999766554

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.60  E-value=3.5  Score=29.91  Aligned_cols=31  Identities=10%  Similarity=0.307  Sum_probs=25.5

Q ss_pred             CCeeEEEEcCCC------CEEEEeeCCCcEEEEeCCC
Q 021925          147 GRINRAVWGPLN------RTIISAGEDAIVRIWDTET  177 (305)
Q Consensus       147 ~~i~~~~~~~~~------~~l~~~~~dg~i~iwd~~~  177 (305)
                      ..+.+++|||.|      -.|++.+.+|.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378899999965      3788889999999998663

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF01011 PQQ: PQQ enzyme repeat family

Probab=88.55  E-value=1.7  Score=22.19  Aligned_cols=30  Identities=23%  Similarity=0.422  Sum_probs=24.7

Q ss_pred             EEEEEeCCCcEEEEecCCCCeeEEEeeCCC
Q 021925           66 TLITGSADQTAKLWNVETGAQLFTFNFDSP   95 (305)
Q Consensus        66 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~   95 (305)
                      .++.++.||.|.-.|.++|+.+..++....
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~   31 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTGPP   31 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence            456668999999999999999998875443

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=88.28  E-value=12  Score=30.07  Aligned_cols=71  Identities=18%  Similarity=0.181  Sum_probs=52.0

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc-c----eEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG-A----VWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~----v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .|+++...++|.+|+++-.-.+|.+.+.++|+.+..+.+... .    -...++-.+-+.+-.+..++.|.++|-.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            478888889999999988888999999999999998876522 1    1123343344555555678899999863

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=88.17  E-value=15  Score=31.07  Aligned_cols=58  Identities=9%  Similarity=-0.071  Sum_probs=41.5

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      ..|..=+.||.+.+++-+.......+.. ---...+.+.+....|++++.+..|.-|..
T Consensus       146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            4677789999999998665444444443 222344678887788999998888888864

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.11  E-value=12  Score=33.96  Aligned_cols=60  Identities=8%  Similarity=0.016  Sum_probs=32.8

Q ss_pred             eEEEEEcCCCcEEEEEeCCCc-----EEEEec---CCCCeeEEEeeCCCceEEEEecCCceEEEeCCc
Q 021925           55 VWCCDVSRDSMTLITGSADQT-----AKLWNV---ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP  114 (305)
Q Consensus        55 v~~i~~~~~~~~l~s~~~dg~-----v~vwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  114 (305)
                      -..+.|-|+|..+++-+.||.     |..+..   +-|+.-............+|+-....++.+..+
T Consensus       249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n  316 (1243)
T COG5290         249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGN  316 (1243)
T ss_pred             hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcc
Confidence            345889999999999776543     444542   222222222334444555555555555544443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.94  E-value=3.8  Score=36.76  Aligned_cols=80  Identities=10%  Similarity=0.038  Sum_probs=56.1

Q ss_pred             CceEecccccceEEEEEc--CCCCEEEEeeCCCceEEEEcCCC--ee-eEEecCCCcceEEEEEcCCC---c---EEEEE
Q 021925            2 RPILMKGHERPLTYLKYN--KDGDLLFSCAKDHTPTVWFADNG--ER-LGTYRGHNGAVWCCDVSRDS---M---TLITG   70 (305)
Q Consensus         2 ~~~~l~~h~~~v~~~~~~--~~~~~l~s~~~dg~v~iw~~~~~--~~-~~~~~~~~~~v~~i~~~~~~---~---~l~s~   70 (305)
                      +|.....-...+.+++++  ...++||+++....|.||-....  +. ...-..|...|-+|+|.++.   .   .++++
T Consensus       155 ~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~  234 (717)
T PF08728_consen  155 KPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVAT  234 (717)
T ss_pred             CCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEE
Confidence            455444456689999998  78888998888888888854431  11 11111256678999997733   2   67788


Q ss_pred             eCCCcEEEEec
Q 021925           71 SADQTAKLWNV   81 (305)
Q Consensus        71 ~~dg~v~vwd~   81 (305)
                      +-.|.+.+|++
T Consensus       235 dI~G~v~~~~I  245 (717)
T PF08728_consen  235 DISGEVWTFKI  245 (717)
T ss_pred             eccCcEEEEEE
Confidence            88999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=87.85  E-value=15  Score=30.67  Aligned_cols=53  Identities=11%  Similarity=0.042  Sum_probs=25.1

Q ss_pred             CCCEEEEeeCC-----------CceEEEEcCCCeeeEEecCCCcce--EEEEEcCCCcEEEEEeCC
Q 021925           21 DGDLLFSCAKD-----------HTPTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTLITGSAD   73 (305)
Q Consensus        21 ~~~~l~s~~~d-----------g~v~iw~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~s~~~d   73 (305)
                      ++.+.+.|+.+           ..+..||..+.+-...-.......  .+....-+++..+.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            45566666643           246677877655332211011111  111221367777777754

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=87.45  E-value=6.2  Score=35.76  Aligned_cols=81  Identities=14%  Similarity=0.097  Sum_probs=55.4

Q ss_pred             eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      .....++.+.++..|   ++.++.+|.|.++...+............|...|+++....++-+++..+.| .++.++.++
T Consensus       623 ~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtet  698 (925)
T KOG3522|consen  623 PTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTET  698 (925)
T ss_pred             ccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEecccc
Confidence            344556666666543   5677889999999998876666665555677889999998887766666555 455556665


Q ss_pred             ceEEE
Q 021925          223 LELIK  227 (305)
Q Consensus       223 ~~~~~  227 (305)
                      .....
T Consensus       699 l~hlq  703 (925)
T KOG3522|consen  699 LWHLQ  703 (925)
T ss_pred             cCCcc
Confidence            44333

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.42  E-value=17  Score=30.79  Aligned_cols=100  Identities=13%  Similarity=0.118  Sum_probs=59.8

Q ss_pred             CCCEEEEeeCCCcEEEE-eCCCCcEeeee---ccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC
Q 021925          157 LNRTIISAGEDAIVRIW-DTETGKLLKES---DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE  232 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iw-d~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  232 (305)
                      .|..+..++.||-|.-| |.+.+.. ..+   +...-...++..+.-..+.+-+++-+..|++.++.....+.+-.-..-
T Consensus       279 Gg~SLLv~~~dG~vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~  357 (733)
T COG4590         279 GGFSLLVVHEDGLVSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY  357 (733)
T ss_pred             CceeEEEEcCCCceeeeeeeecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh
Confidence            35568888899988776 5543321 111   100011233433333334456788888888888876555544333333


Q ss_pred             CCeeEEEecCCCCcEEEeeCCcEEE
Q 021925          233 RPVNAVTMSPLLDHVCIGEPQTIKF  257 (305)
Q Consensus       233 ~~v~~~~~~~~~~~l~~~~~~~~~~  257 (305)
                      ..+.-+++||.+.++++-...+.+.
T Consensus       358 ~~~~~~~~Sp~~~~Ll~e~~gki~~  382 (733)
T COG4590         358 QAPQLVAMSPNQAYLLSEDQGKIRL  382 (733)
T ss_pred             cCcceeeeCcccchheeecCCceEE
Confidence            3677889999999999876666543

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=87.25  E-value=22  Score=31.94  Aligned_cols=197  Identities=11%  Similarity=0.052  Sum_probs=0.0

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEc---------CCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CCc---E
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFA---------DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQT---A   76 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~---------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~---v   76 (305)
                      .+.|-++.+.++++.+++...+|.|.+||.         .....-..--.+..-|.....-....++++.+. ++.   .
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE


Q ss_pred             EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      +++.+ .......+.....+....-..+..+.+..+.-.......+..+.+..............+......+.++.--.
T Consensus       209 kL~~l-~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s  287 (670)
T PF10395_consen  209 KLISL-SNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS  287 (670)
T ss_pred             EEEEe-ccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE------cCCCCEEEEE
Q 021925          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK------AADGSHFLTG  209 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~  209 (305)
                      ..+.|++..  .+|++.|+.-...+..+.........+.--++      +.+.+.+|.+
T Consensus       288 ~nRvLLs~~--nkIyLld~~~~siLse~~~s~~~~~qll~~~vv~vkG~s~nt~T~a~~  344 (670)
T PF10395_consen  288 PNRVLLSVN--NKIYLLDLKFESILSEFELSHPKPFQLLLSQVVPVKGNSQNTKTFALY  344 (670)
T ss_pred             CCeEEEEcC--CEEEEEeehhhhhhhhhhccCCccceeeeeeeeeccccccCceEEEEE

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.75  E-value=19  Score=30.81  Aligned_cols=109  Identities=9%  Similarity=0.026  Sum_probs=63.8

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee--eEEec-----CCCcceEEEEEcCCC------cEEEEEe-
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYR-----GHNGAVWCCDVSRDS------MTLITGS-   71 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~-----~~~~~v~~i~~~~~~------~~l~s~~-   71 (305)
                      +...-.....|+|.|||++|++--..|.|++++..++..  +..+.     ...+....|+++|+-      .+|.... 
T Consensus        25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt  104 (454)
T TIGR03606        25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT  104 (454)
T ss_pred             EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence            344456678999999998877655469999997654432  21111     135678999999873      2444332 


Q ss_pred             C---------CCcEEEEecCCC--C---eeEEEe-e----CCCceEEEEecCCceEEEeCCc
Q 021925           72 A---------DQTAKLWNVETG--A---QLFTFN-F----DSPARSVDFAVGDKLAVITTDP  114 (305)
Q Consensus        72 ~---------dg~v~vwd~~~~--~---~~~~~~-~----~~~v~~~~~~~~~~~~~~~~~~  114 (305)
                      .         ...|.-|.+...  .   ....+. .    ...-..+.|.|++.+.+...+.
T Consensus       105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence            1         223444544321  1   111111 1    1235578899999877776664

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=86.72  E-value=3  Score=32.14  Aligned_cols=82  Identities=17%  Similarity=0.131  Sum_probs=49.9

Q ss_pred             EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC-C--CeEEEEEcCC----ceEE---EEEeeCCCeeEEEe
Q 021925          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-D--KSAKLWDART----LELI---KTYVTERPVNAVTM  240 (305)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~----~~~~---~~~~~~~~v~~~~~  240 (305)
                      .+||+.+++.. .+..  ..+....+-++-+||++|.+|+. +  ..+++++...    .+..   ..+.....-.++..
T Consensus        49 ~~yD~~tn~~r-pl~v--~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~  125 (243)
T PF07250_consen   49 VEYDPNTNTFR-PLTV--QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT  125 (243)
T ss_pred             EEEecCCCcEE-eccC--CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence            57888876543 2221  12223333457789999998885 3  3488888654    1111   11224444566777


Q ss_pred             cCCCCcEEEeeCCcE
Q 021925          241 SPLLDHVCIGEPQTI  255 (305)
Q Consensus       241 ~~~~~~l~~~~~~~~  255 (305)
                      -|||+.|++|+....
T Consensus       126 L~DG~vlIvGG~~~~  140 (243)
T PF07250_consen  126 LPDGRVLIVGGSNNP  140 (243)
T ss_pred             CCCCCEEEEeCcCCC
Confidence            899999999987743

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.99  E-value=20  Score=30.21  Aligned_cols=148  Identities=9%  Similarity=0.054  Sum_probs=0.0

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC----
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA----   85 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~----   85 (305)
                      .+....+..+++|.+++.+..-..++-||-....-...-......+..+.+.+++..++++..-+  .++....++    
T Consensus       238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~--l~~S~d~G~~~~~  315 (398)
T PLN00033        238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGG--LYVSKGTGLTEED  315 (398)
T ss_pred             ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCce--EEEecCCCCcccc


Q ss_pred             -eeEEEeeC---CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe---ccCCCeeEEEEcCCC
Q 021925           86 -QLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK---GPQGRINRAVWGPLN  158 (305)
Q Consensus        86 -~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~  158 (305)
                       .......+   ..+..+.+.+++..++++..+.......             .++.-....   .-....+.+.|.+++
T Consensus       316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D-------------~G~tW~~~~~~~~~~~~ly~v~f~~~~  382 (398)
T PLN00033        316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTD-------------GGKSWKRDKGADNIAANLYSVKFFDDK  382 (398)
T ss_pred             cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCC-------------CCcceeEccccCCCCcceeEEEEcCCC


Q ss_pred             CEEEEeeCCCcEEEE
Q 021925          159 RTIISAGEDAIVRIW  173 (305)
Q Consensus       159 ~~l~~~~~dg~i~iw  173 (305)
                      +-+++| .+|.|.-|
T Consensus       383 ~g~~~G-~~G~il~~  396 (398)
T PLN00033        383 KGFVLG-NDGVLLRY  396 (398)
T ss_pred             ceEEEe-CCcEEEEe

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=85.45  E-value=28  Score=31.59  Aligned_cols=35  Identities=11%  Similarity=0.107  Sum_probs=29.2

Q ss_pred             CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925           52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus        52 ~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      ...++++.-+|.+.-++.++.||.|++++....+.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q   48 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ   48 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence            45578888889999999999999999999865544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.01  E-value=29  Score=31.38  Aligned_cols=53  Identities=2%  Similarity=0.002  Sum_probs=38.7

Q ss_pred             cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCC
Q 021925          192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLL  244 (305)
Q Consensus       192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~  244 (305)
                      +.+..+..||+.++|+--..+|.|.+-+....+....+.  ...+...++|..+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            567889999999999999999999999888777666665  22233345554433

>KOG3611 consensus Semaphorins [Signal transduction mechanisms]

Probab=84.98  E-value=12  Score=34.05  Aligned_cols=77  Identities=22%  Similarity=0.286  Sum_probs=49.9

Q ss_pred             CceEecccccceEEEEEc----CCCC--EEEEeeCCCce-EEEEcCCCe-----eeEEec--CCCcceEEEEEcCCCcEE
Q 021925            2 RPILMKGHERPLTYLKYN----KDGD--LLFSCAKDHTP-TVWFADNGE-----RLGTYR--GHNGAVWCCDVSRDSMTL   67 (305)
Q Consensus         2 ~~~~l~~h~~~v~~~~~~----~~~~--~l~s~~~dg~v-~iw~~~~~~-----~~~~~~--~~~~~v~~i~~~~~~~~l   67 (305)
                      +|+.++......+.++.+    .+++  .|+.|+.+|+| ++-...+..     .+..++  .+..+|..|..++....|
T Consensus       399 ~P~l~~~~~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~L  478 (737)
T KOG3611|consen  399 RPLLVKTGDYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSL  478 (737)
T ss_pred             CceEEecccceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeE
Confidence            466655446667777776    4554  46778888876 343333311     233332  255889999999988889


Q ss_pred             EEEeCCCcEEE
Q 021925           68 ITGSADQTAKL   78 (305)
Q Consensus        68 ~s~~~dg~v~v   78 (305)
                      ++|+..|.++|
T Consensus       479 yVgs~~gV~qv  489 (737)
T KOG3611|consen  479 YVGSRSGVVQV  489 (737)
T ss_pred             EEEccCcEEEe
Confidence            99988875554

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=84.64  E-value=7.7  Score=24.35  Aligned_cols=50  Identities=10%  Similarity=-0.012  Sum_probs=32.2

Q ss_pred             CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CCcEEEEecCC
Q 021925           31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVET   83 (305)
Q Consensus        31 dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~vwd~~~   83 (305)
                      -+.|..||..+  ......+ -...+.|.++|++++|..++. .+.|.++..+.
T Consensus        35 ~~~Vvyyd~~~--~~~va~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   35 WGNVVYYDGKE--VKVVASG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CceEEEEeCCE--eEEeecc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            35666777432  2222232 234588999999988876654 78899998653

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=84.33  E-value=20  Score=28.83  Aligned_cols=73  Identities=18%  Similarity=0.172  Sum_probs=48.3

Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCcc--ceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      -++++...++|.+|++.-.-..|.+.|.++++.+..+.......-  .-...++-.+-+++-.+..++.|.++|=
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            367778888999999998889999999999999888862211000  1112333334444444556777777775

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=84.03  E-value=27  Score=30.25  Aligned_cols=190  Identities=16%  Similarity=0.129  Sum_probs=0.0

Q ss_pred             CCCCEEEEe---eCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCc
Q 021925           20 KDGDLLFSC---AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA   96 (305)
Q Consensus        20 ~~~~~l~s~---~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v   96 (305)
                      .+|=++++.   ...+...+.| .+|..+..+.........+...++|.+++..+  ..+..+|+. |+.+.....+...
T Consensus       113 ~~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~  188 (477)
T PF05935_consen  113 EDGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGY  188 (477)
T ss_dssp             TT-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTE
T ss_pred             CCcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcc


Q ss_pred             ----eEEEEecCCceEEEeC-------CcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC-----------------
Q 021925           97 ----RSVDFAVGDKLAVITT-------DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR-----------------  148 (305)
Q Consensus        97 ----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  148 (305)
                          ..+...|+|++++.+.       .     .....+.+...... ..++.+.....-+--                 
T Consensus       189 ~~~HHD~~~l~nGn~L~l~~~~~~~~~~-----~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~  262 (477)
T PF05935_consen  189 YDFHHDIDELPNGNLLILASETKYVDED-----KDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDIS  262 (477)
T ss_dssp             E-B-S-EEE-TTS-EEEEEEETTEE-TS------EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS
T ss_pred             cccccccEECCCCCEEEEEeecccccCC-----CCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccc


Q ss_pred             ----------eeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC----------------
Q 021925          149 ----------INRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA----------------  201 (305)
Q Consensus       149 ----------i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~----------------  201 (305)
                                ++++.+.+ ++.+++++-.-..|...|.++++....+-...+-........+.|                
T Consensus       263 ~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~  342 (477)
T PF05935_consen  263 GSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFD  342 (477)
T ss_dssp             -SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS--
T ss_pred             cCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCc


Q ss_pred             --CCCEEEEEeCCC---eEEEEE
Q 021925          202 --DGSHFLTGSLDK---SAKLWD  219 (305)
Q Consensus       202 --~~~~l~~~~~dg---~i~iwd  219 (305)
                        -|+.-+.--.+|   .|.++|
T Consensus       343 ~~~gQH~~~~~~~g~~~~l~vFD  365 (477)
T PF05935_consen  343 WFWGQHTAHLIPDGPQGNLLVFD  365 (477)
T ss_dssp             --SS-EEEEE-TTS---SEEEEE
T ss_pred             ccccccceEEcCCCCeEEEEEEE

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=83.86  E-value=23  Score=29.20  Aligned_cols=155  Identities=12%  Similarity=-0.018  Sum_probs=0.0

Q ss_pred             EEEEcCCCCEEEEeeCCCceEEEEc--CCCeeeEE---ecCCC---cceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925           15 YLKYNKDGDLLFSCAKDHTPTVWFA--DNGERLGT---YRGHN---GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus        15 ~~~~~~~~~~l~s~~~dg~v~iw~~--~~~~~~~~---~~~~~---~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      ++..+.+.....+|..+|-|..-+.  .+......   .....   ++-..++|...+.-|+.+..---+..-+.+.+..
T Consensus        69 ~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a  148 (376)
T KOG1520|consen   69 YTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLA  148 (376)
T ss_pred             eEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcc


Q ss_pred             eEEEe-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           87 LFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        87 ~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      .....     .-.-...+...+++.+.++.+........-+..                                    +
T Consensus       149 ~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a------------------------------------~  192 (376)
T KOG1520|consen  149 ELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFA------------------------------------A  192 (376)
T ss_pred             eeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEe------------------------------------e


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG  209 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  209 (305)
                      +.+..+|.+.-||..+.....-+.    .-.-.+.++.|||+.+++.+
T Consensus       193 l~g~~~GRl~~YD~~tK~~~VLld----~L~F~NGlaLS~d~sfvl~~  236 (376)
T KOG1520|consen  193 LEGDPTGRLFRYDPSTKVTKVLLD----GLYFPNGLALSPDGSFVLVA  236 (376)
T ss_pred             ecCCCccceEEecCcccchhhhhh----cccccccccCCCCCCEEEEE

>PHA02790 Kelch-like protein; Provisional

Probab=82.81  E-value=31  Score=29.95  Aligned_cols=91  Identities=10%  Similarity=-0.067  Sum_probs=43.0

Q ss_pred             CCCEEEEeeCCC---cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eC
Q 021925          157 LNRTIISAGEDA---IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TE  232 (305)
Q Consensus       157 ~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~  232 (305)
                      +++..+.|+.++   .+..||.++.+-...-... ...... +++ .-+++..+.|+   .+.+||.++.+-...-. ..
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~r~~~-~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~  435 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YPHYKS-CAL-VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIY  435 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC-Cccccc-eEE-EECCEEEEECC---ceEEecCCCCcEeEcCCCCC
Confidence            466666776543   4778888765443221110 111111 222 23566666664   56788887654332111 11


Q ss_pred             CCeeEEEecCCCCcEEEeeCC
Q 021925          233 RPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       233 ~~v~~~~~~~~~~~l~~~~~~  253 (305)
                      .....-+..-+++..++||.+
T Consensus       436 ~r~~~~~~v~~~~IYviGG~~  456 (480)
T PHA02790        436 PRDNPELIIVDNKLLLIGGFY  456 (480)
T ss_pred             CccccEEEEECCEEEEECCcC
Confidence            111111223356666777644

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=82.66  E-value=25  Score=28.81  Aligned_cols=53  Identities=9%  Similarity=0.040  Sum_probs=25.9

Q ss_pred             CCCEEEEeeCC-----------CceEEEEcCCCeeeEEecCCCcceEEE-EE-cCCCcEEEEEeCC
Q 021925           21 DGDLLFSCAKD-----------HTPTVWFADNGERLGTYRGHNGAVWCC-DV-SRDSMTLITGSAD   73 (305)
Q Consensus        21 ~~~~l~s~~~d-----------g~v~iw~~~~~~~~~~~~~~~~~v~~i-~~-~~~~~~l~s~~~d   73 (305)
                      ++++.+.|+.+           ..+..||..+.+-...-.......... .. .-+++..+.|+.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            56666667653           246677877655332211111111111 11 2367777777764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=82.53  E-value=33  Score=30.01  Aligned_cols=233  Identities=11%  Similarity=0.051  Sum_probs=106.4

Q ss_pred             cCCCCEEEEeeCCCceEEEEcCCCe---eeEEecCCCcceEEEEEcCCC-cEEEEEeC--CCcEEEEecCCCCeeEEEee
Q 021925           19 NKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDS-MTLITGSA--DQTAKLWNVETGAQLFTFNF   92 (305)
Q Consensus        19 ~~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~--dg~v~vwd~~~~~~~~~~~~   92 (305)
                      ..++..++-+..+|.+..-.+....   .+..+..-.....++.+..++ .+|+.|+.  |+.+.-|....-+.+..+..
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N  298 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN  298 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence            4466788888999999888765433   122222113445667776655 35666665  55666666555566677778


Q ss_pred             CCCceEEEEecC----C-------ceEEEeCCcceeeeeeEEEEEeecccCCC-CCceEEEEeccCCCeeEEEEcC-CCC
Q 021925           93 DSPARSVDFAVG----D-------KLAVITTDPFMELNSAIHVKRIARDPADQ-GGESVLILKGPQGRINRAVWGP-LNR  159 (305)
Q Consensus        93 ~~~v~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~  159 (305)
                      -+++.++++.+.    .       .++++++.+.   .+.+..  ++...... .......+.+ -..++.+.... +..
T Consensus       299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~---~gsL~~--lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~  372 (504)
T PF10433_consen  299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGK---RGSLRI--LRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHS  372 (504)
T ss_dssp             --SEEEEEEE-TSSSSS-------EEEEEESSGG---G-EEEE--EEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBS
T ss_pred             cCCccceEEeccccCCCCcccccceEEEEECcCC---CCcEEE--EeccCCceeeeeeccCCCC-ceEEEEeeecCCCce
Confidence            888999988642    1       3344433221   122211  11111000 0000011111 22333333322 145


Q ss_pred             EEEEeeCCCcEEEEeCC---CCcEeeeecc--ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eC
Q 021925          160 TIISAGEDAIVRIWDTE---TGKLLKESDK--ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TE  232 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~---~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~  232 (305)
                      +|+.+..+ .-+++.+.   ....+..+..  .......+.+-.+.  +..++=.... .|++.+...++....+.  .+
T Consensus       373 ~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~  448 (504)
T PF10433_consen  373 YLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAG  448 (504)
T ss_dssp             EEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS
T ss_pred             EEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCC
Confidence            66666554 34455553   2333322211  11122233333332  4455555544 48899988888777765  44


Q ss_pred             CCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925          233 RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL  263 (305)
Q Consensus       233 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (305)
                      ..|.+.+...  ..++++-.++......+..
T Consensus       449 ~~I~~a~~~~--~~v~v~~~~~~~~~~~~~~  477 (504)
T PF10433_consen  449 SIIVAASIND--PQVLVALSGGELVYFELDD  477 (504)
T ss_dssp             ---SEEEESS--SEEEEEE-TTEEEEEEEET
T ss_pred             CeEEEEEECC--CEEEEEEeCCcEEEEEEEC
Confidence            4566655554  4555555555544444443

...

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=81.24  E-value=18  Score=33.54  Aligned_cols=85  Identities=8%  Similarity=0.014  Sum_probs=55.7

Q ss_pred             EEEee-CCCcEEEEeCCCCcEeee-eccccCCccceEEEEEcCCCCEEEE-EeCCC-----eEEEEEcCCc-eEEEEEe-
Q 021925          161 IISAG-EDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLT-GSLDK-----SAKLWDARTL-ELIKTYV-  230 (305)
Q Consensus       161 l~~~~-~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg-----~i~iwd~~~~-~~~~~~~-  230 (305)
                      ||-.. ..+.|.+-|.....+... ++    +..++.+-+|||||+.|+- .+.++     .|++-|+++. .-+-.+. 
T Consensus       321 iAfv~~~~~~L~~~D~dG~n~~~ve~~----~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v  396 (912)
T TIGR02171       321 LAFRNDVTGNLAYIDYTKGASRAVEIE----DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV  396 (912)
T ss_pred             EEEEEcCCCeEEEEecCCCCceEEEec----CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec
Confidence            44333 346888888876555443 43    6788999999999999987 55444     4888888753 2223333 


Q ss_pred             eCCCeeEEEecCCCCcEEE
Q 021925          231 TERPVNAVTMSPLLDHVCI  249 (305)
Q Consensus       231 ~~~~v~~~~~~~~~~~l~~  249 (305)
                      ....|..-...++|..+++
T Consensus       397 e~aaiprwrv~e~gdt~iv  415 (912)
T TIGR02171       397 ENAAIPRWRVLENGDTVIV  415 (912)
T ss_pred             ccccccceEecCCCCeEEE
Confidence            4556666667777776443

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=81.15  E-value=37  Score=29.70  Aligned_cols=84  Identities=15%  Similarity=0.156  Sum_probs=50.8

Q ss_pred             cCCCCEEEEeeCCCcEEEEeCCCCcE---eeeeccccCC-ccceEEEEEcCCC-CEEEEEeC--CCeEEEEEcCCceEEE
Q 021925          155 GPLNRTIISAGEDAIVRIWDTETGKL---LKESDKETGH-KKTITSLAKAADG-SHFLTGSL--DKSAKLWDARTLELIK  227 (305)
Q Consensus       155 ~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~--dg~i~iwd~~~~~~~~  227 (305)
                      ..++..++.+.++|.+....+.....   +..+    +. ....+++++-.+| .+|+.|+.  |+.+.-+.....+.+.
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~----g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~  294 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL----GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLD  294 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE----EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEE
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc----CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEE
Confidence            44567888999999999888765432   2222    12 3445566666554 36666665  5666667766667777


Q ss_pred             EEeeCCCeeEEEecC
Q 021925          228 TYVTERPVNAVTMSP  242 (305)
Q Consensus       228 ~~~~~~~v~~~~~~~  242 (305)
                      .+..-+||.++++.+
T Consensus       295 ~~~N~~Pi~D~~v~~  309 (504)
T PF10433_consen  295 SLPNWGPIVDFCVVD  309 (504)
T ss_dssp             EE----SEEEEEEE-
T ss_pred             eccCcCCccceEEec
Confidence            788888999988853

...

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=80.83  E-value=31  Score=28.64  Aligned_cols=194  Identities=19%  Similarity=0.112  Sum_probs=97.7

Q ss_pred             EEEEeeCCCceEEEEcCCCeeeEEecCC--CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC--CceEE
Q 021925           24 LLFSCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PARSV   99 (305)
Q Consensus        24 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~v~~~   99 (305)
                      .+..+..+|.|.-.|.++++.+.....-  ...+.+-.+..+|+ ++.++.+|.+...|.++++.+.......  .....
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            4455577888888888888865433321  12233333333665 7778888999999998999998888666  11112


Q ss_pred             EEecCCceEEEeCCcce-eeee--eEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC--CCcEEEEe
Q 021925          100 DFAVGDKLAVITTDPFM-ELNS--AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE--DAIVRIWD  174 (305)
Q Consensus       100 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd  174 (305)
                      ....++.......++.. .++.  ....|......      . ........++      .....++.+..  ++.+.-.|
T Consensus       149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~------~-~~~~~~~~~~------~~~~~vy~~~~~~~~~~~a~~  215 (370)
T COG1520         149 PVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPA------P-LSLSIYGSPA------IASGTVYVGSDGYDGILYALN  215 (370)
T ss_pred             cEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCC------c-cccccccCce------eecceEEEecCCCcceEEEEE
Confidence            22223333333221111 1111  11122221110      0 0011111111      11223444444  56677778


Q ss_pred             CCCCcEeeeeccc--cCCccceEEEEEcC----CCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925          175 TETGKLLKESDKE--TGHKKTITSLAKAA----DGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (305)
Q Consensus       175 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  231 (305)
                      ..+++........  .+.......-.+..    .+.-+..++.++.+...|..+++.+..+..
T Consensus       216 ~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         216 AEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             ccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            8777776653210  01110000001100    112246777788899999999999988875

>PLN02193 nitrile-specifier protein

Probab=80.60  E-value=37  Score=29.39  Aligned_cols=68  Identities=15%  Similarity=0.111  Sum_probs=36.8

Q ss_pred             CCCEEEEeeCC----CcEEEEeCCCCcEeeeecc--ccCCccceEEEEEcCCCCEEEEEeCC--------------CeEE
Q 021925          157 LNRTIISAGED----AIVRIWDTETGKLLKESDK--ETGHKKTITSLAKAADGSHFLTGSLD--------------KSAK  216 (305)
Q Consensus       157 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~  216 (305)
                      +++.++.++.+    ..+.+||+.+.+-...-..  .........++.  -++++++.|+.+              ..+.
T Consensus       328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~  405 (470)
T PLN02193        328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTF  405 (470)
T ss_pred             CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEE
Confidence            45666666654    4689999987654332110  001111122222  256677777753              2478


Q ss_pred             EEEcCCceEE
Q 021925          217 LWDARTLELI  226 (305)
Q Consensus       217 iwd~~~~~~~  226 (305)
                      ++|+.+.+-.
T Consensus       406 ~~D~~t~~W~  415 (470)
T PLN02193        406 ALDTETLQWE  415 (470)
T ss_pred             EEEcCcCEEE
Confidence            8888876543

>PRK10115 protease 2; Provisional

Probab=80.15  E-value=48  Score=30.40  Aligned_cols=199  Identities=9%  Similarity=-0.028  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCEEEEeeCC------CceEEEEcCCC--eeeEEecCCCcceE-EEEEcCCCcEEEEEeC---CCcEEEEec
Q 021925           14 TYLKYNKDGDLLFSCAKD------HTPTVWFADNG--ERLGTYRGHNGAVW-CCDVSRDSMTLITGSA---DQTAKLWNV   81 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~~d------g~v~iw~~~~~--~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~~---dg~v~vwd~   81 (305)
                      ..++|++|++.|+....+      ..|+.+++.++  +....+........ .+..+.++++++..+.   ++.+.+++.
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            468999999877665432      36777888877  33344443333333 3333447776654433   457888884


Q ss_pred             C--CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-C-CCeeEEEEcCC
Q 021925           82 E--TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-Q-GRINRAVWGPL  157 (305)
Q Consensus        82 ~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~i~~~~~~~~  157 (305)
                      .  +++..........+..-....++ .+.+.++....   ...+......   ...+. ..+..+ . ..+..+.+. .
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~tn~~~~---~~~l~~~~~~---~~~~~-~~l~~~~~~~~i~~~~~~-~  325 (686)
T PRK10115        255 ELADAEPFVFLPRRKDHEYSLDHYQH-RFYLRSNRHGK---NFGLYRTRVR---DEQQW-EELIPPRENIMLEGFTLF-T  325 (686)
T ss_pred             cCCCCCceEEEECCCCCEEEEEeCCC-EEEEEEcCCCC---CceEEEecCC---CcccC-eEEECCCCCCEEEEEEEE-C
Confidence            3  34333333333332222223333 33333321110   1111111111   01122 223333 2 367777777 2


Q ss_pred             CCEEEEeeCCCcEEE--EeCCCCcEeeeeccccCCccceEEEEEc--CCCC-EEEEEeC---CCeEEEEEcCCce
Q 021925          158 NRTIISAGEDAIVRI--WDTETGKLLKESDKETGHKKTITSLAKA--ADGS-HFLTGSL---DKSAKLWDARTLE  224 (305)
Q Consensus       158 ~~~l~~~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~l~~~~~---dg~i~iwd~~~~~  224 (305)
                      +..+++...+|.-++  +|...+ .+..+..  .....+..+..+  +++. ++++.++   -+.+..+|..+++
T Consensus       326 ~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        326 DWLVVEERQRGLTSLRQINRKTR-EVIGIAF--DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CEEEEEEEeCCEEEEEEEcCCCC-ceEEecC--CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            344555556665444  454333 3333321  112223333344  3333 4444433   5779999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	305
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		9e-39
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-17
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		8e-17
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-16
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-16
2h9l_A	329	Wdr5delta23 Length = 329		2e-16
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-16
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-16
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-16
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-16
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-16
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-16
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-16
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-16
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-16
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-16
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-16
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-16
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-16
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-16
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-12
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		5e-12
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		6e-11
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-04
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-10
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-10
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-10
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-09
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-09
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-08
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-08
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		3e-08
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-08
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		5e-08
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-08
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-07
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		3e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		7e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		7e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		9e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		7e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		9e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		4e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		6e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		9e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		9e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		5e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		9e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		4e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-04

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score =  157 bits (396), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 143/265 (53%), Gaps = 13/265 (4%)
Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           M+ I + GHERPLT +KYNK+GDLLFSC+KD + +VW++ NGERLGT  GH G +W  DV
Sbjct: 23  MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
              +   +TGSAD + KLW+V  G  + T+    P + V+F+      +   D  M+   
Sbjct: 83  DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPG 142
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRI---------NRAVWGPLNRTIISAGEDAIVR 171
           +I++  I RD A    E   + + P  +I           A W    + II+  +D  + 
Sbjct: 143 SINIYEIERDSATH--ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKIS 200
Query: 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231
            +D       +  D    H+K+I+ +  + D ++F+T S D ++ L D  TL+++K Y T
Sbjct: 201 KYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET 258
Query: 232 ERPVNAVTMSPLLDHVCIGEPQTIK 256
           + P+N   ++PL + + +G  Q  K
Sbjct: 259 DCPLNTAVITPLKEFIILGGGQEAK 283

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 23/240 (9%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH   +  + ++ DG  + S + D T  +W   NG+ L T  GH+ +VW    S D  
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQ 357
Query: 66  TLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123
           T+ + S D+T KLWN   G  L T     S  R V F+  G  +A  + D  ++L     
Sbjct: 358 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL----- 411
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
                    ++ G+ +  L G    +    + P ++TI SA +D  V++W+   G+LL+ 
Sbjct: 412 --------WNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQT 462
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242
               TGH  ++  +A + DG    + S DK+ KLW+ R  +L++T       V  V  SP
Sbjct: 463 ---LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 518

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 112/245 (45%), Gaps = 42/245 (17%)
Query: 3   PILMKGHE-RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS 61
           P ++KGH+   +T L++   G+ + S + D+T  VW A  G+ L T  GH G VW   + 
Sbjct: 111 PKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM- 167
Query: 62  RDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           RD++ +I+GS D+T K+WN ETG  + T +   S  R +                     
Sbjct: 168 RDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH-------------------- 206
Query: 121 AIHVKRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI 172
            +H KR+     D        + G+ + +L G    +    +    R ++S   D +V++
Sbjct: 207 -LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKV 263
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           WD ET   L       GH   + SL    DG H ++GSLD S ++WD  T   I T    
Sbjct: 264 WDPETETCLHTLQ---GHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
Query: 233 RPVNA 237
           + + +
Sbjct: 319 QSLTS 323

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 178
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 78  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 189
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 190 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 248 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 290

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 57  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 168
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 169 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 226
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 227 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 269

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 60  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 171
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 172 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 230 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 272

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 172
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 62  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 173
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 174 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 231
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 232 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 274

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 172
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 66  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 177
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 178 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 236 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 278

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 178
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 178
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 83  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 194
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 195 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 253 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 295

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 54/228 (23%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 85  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            +++GS D++ ++W+V+TG  L T     PA S              DP     SA+H  
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV----SAVHFN 182
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
           R                    G +           I+S+  D + RIWDT +G+ LK   
Sbjct: 183 R-------------------DGSL-----------IVSSSYDGLCRIWDTASGQCLKTLI 212
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
            +      ++ +  + +G + L  +LD + KLWD    + +KTY   +
Sbjct: 213 DD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 258

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 95/236 (40%), Gaps = 20/236 (8%)
Query: 4   ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
           ++++GHE+ +  L Y   GD L S + D T  +W    G+   T    +G         D
Sbjct: 159 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218
Query: 64  SMTLITGSADQTAKLWNVETG---------AQLFTFNFDSPARSVDFAVGDKLAVITTDP 114
              +  GS D+  ++W+ ETG          +  T + DS    V    G  +   + D 
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278
Query: 115 FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
            ++L +  +    +       G   +   G +  +        +  I+S  +D  V  WD
Sbjct: 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Query: 175 TETGKLLKESDKETGHKKTITSLAKAADGSH-------FLTGSLDKSAKLWDARTL 223
            ++G  L       GH+ ++ S+A  A+GS        F TGS D  A++W  + +
Sbjct: 339 KKSGNPLL---MLQGHRNSVISVA-VANGSSLGPEYNVFATGSGDCKARIWKYKKI 390

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 19/210 (9%)
Query: 12  PLTY-LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG 70
           P  Y L  + D  + FSC  D    VW   N   +  ++GH     C D+S D   L TG
Sbjct: 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 71  SADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIAR 129
             D T + W++  G QL   +F S   S+ +   G+ LAV      +E+   +HV +  +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV---LHVNKPDK 258
Query: 130 DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG 189
                    VL LK          +    +  +S G+D ++  W T  G  + +S + + 
Sbjct: 259 YQLHLHESCVLSLK----------FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS- 307
Query: 190 HKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
              ++ S   + D  + +TGS DK A +++
Sbjct: 308 ---SVLSCDISVDDKYIVTGSGDKKATVYE 334

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 52/251 (20%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           ++GH   ++ +  + +G+   S + DH+  +W   NG+    + GH   V     S D+ 
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            +++G  D   ++WNV+ G  + T +          A  D ++ +   P ++        
Sbjct: 123 QIVSGGRDNALRVWNVK-GECMHTLSRG--------AHTDWVSCVRFSPSLD-------- 165
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
                                         P+   I+S G D +V++WD  TG+L+ +  
Sbjct: 166 -----------------------------APV---IVSGGWDNLVKVWDLATGRLVTD-- 191
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245
              GH   +TS+  + DGS   +   D  A+LWD    E +       P+N +  SP   
Sbjct: 192 -LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRY 250
Query: 246 HVCIGEPQTIK 256
            +C    + I+
Sbjct: 251 WMCAATEKGIR 261

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           M GH+  ++ +    +GD + S ++D T  +W    G  + T+ GH   V     ++D  
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 66  TLITGSADQTAKLWNVETG------------AQLFTFNFDSPARSVDFAVGDKLAVITTD 113
            + + S DQT ++W V T              +  ++  +S   S+  A G +    +  
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK-SGK 306
Query: 114 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
           P   L S    K I       G   ++ L G    +   ++    + I+S  +D  +R+W
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Query: 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221
           D +  + +K  +    H+  +TSL       + +TGS+D++ K+W+ R
Sbjct: 366 DYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           +  ++++ H   + +  +++DG  + SC  D T  V+ A+ GE+L   + H   V CC  
Sbjct: 606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 665
Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPFM 116
           S D   + T SAD+  K+W+  TG  + T++  S   +            LA  + D F+
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
           +L                  E    + G    +N   + P +  + S   D  +R+WD  
Sbjct: 726 KLWDL------------NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Query: 177 TG 178
           + 
Sbjct: 774 SA 775

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 112/280 (40%), Gaps = 50/280 (17%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS- 64
           +K HE  +    ++ D   + +C+ D    +W +  G+ + TY  H+  V CC  +  S 
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 65  -MTLITGSADQTAKLWNV-ETGAQLFTFNFDSPARSVDFAVGDKL-AVITTDPFMEL--- 118
            + L TGS D   KLW++ +   +   F   +      F+  D+L A  + D  + L   
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 119 -----NSAIHVKRI---ARDPADQ------------GGESVL------------------ 140
                  +I+VKR    + DP +              G+ ++                  
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832
Query: 141 --ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
             I  G    I    + P +   + A     V +W+ ++   LK +D   GH   +  + 
Sbjct: 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR--LKVADCR-GHLSWVHGVM 889
Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
            + DGS FLT S D++ ++W+ + +      V ++ ++ V
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 125 KRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
           +RIA   AD        + GE +L +K  +  +    +   +  I +   D  V+IWD+ 
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687
Query: 177 TGKLLKESDKETGHKKTITSLAKAADGSHFL--TGSLDKSAKLWDARTLELIKT-YVTER 233
           TGKL+   D+   H + +         +H L  TGS D   KLWD    E   T +    
Sbjct: 688 TGKLVHTYDE---HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744
Query: 234 PVNAVTMSP 242
            VN    SP
Sbjct: 745 SVNHCRFSP 753

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           +  ++++ H   + +  +++DG  + SC  D T  V+ A+ GE+L   + H   V CC  
Sbjct: 613 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 672
Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPFM 116
           S D   + T SAD+  K+W+  TG  + T++  S   +            LA  + D F+
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
           +L                  E    + G    +N   + P +  + S   D  +R+WD  
Sbjct: 733 KLWDL------------NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Query: 177 TG 178
           + 
Sbjct: 781 SA 782

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 112/280 (40%), Gaps = 50/280 (17%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS- 64
           +K HE  +    ++ D   + +C+ D    +W +  G+ + TY  H+  V CC  +  S 
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 65  -MTLITGSADQTAKLWNV-ETGAQLFTFNFDSPARSVDFAVGDKL-AVITTDPFMEL--- 118
            + L TGS D   KLW++ +   +   F   +      F+  D+L A  + D  + L   
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 119 -----NSAIHVKRI---ARDPADQ------------GGESVL------------------ 140
                  +I+VKR    + DP +              G+ ++                  
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 839
Query: 141 --ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
             I  G    I    + P +   + A     V +W+ ++   LK +D   GH   +  + 
Sbjct: 840 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR--LKVADCR-GHLSWVHGVM 896
Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
            + DGS FLT S D++ ++W+ + +      V ++ ++ V
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 936

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 125 KRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
           +RIA   AD        + GE +L +K  +  +    +   +  I +   D  V+IWD+ 
Sbjct: 635 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 694
Query: 177 TGKLLKESDKETGHKKTITSLAKAADGSHFL--TGSLDKSAKLWDARTLELIKT-YVTER 233
           TGKL+   D+   H + +         +H L  TGS D   KLWD    E   T +    
Sbjct: 695 TGKLVHTYDE---HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 751
Query: 234 PVNAVTMSP 242
            VN    SP
Sbjct: 752 SVNHCRFSP 760

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 23/230 (10%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RD 63
           + GH+  +  LKY   G +L S + D T  VW    G     + GHN  V C D+   ++
Sbjct: 158 LSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 64  SMTLITGSADQTAKLWNVETGAQL--------FTFNFDSPARS---VDFAVGDKLAVITT 112
              ++TGS D T  +W +   + +        +   F +P  +   V    G   +V T 
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 113 DPF--MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
                + ++ +     I  D A    + + IL G   RI   ++    +  ISA  D  +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQM--KCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
           RIWD E G+L+      T     +  L + +D    ++ + D S + WDA
Sbjct: 335 RIWDLENGELMYTLQGHTA----LVGLLRLSD-KFLVSAAADGSIRGWDA 379

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 25/242 (10%)
Query: 5   LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
           ++ GH   +  L+Y  D  ++ + + D T  VW  + GE L T   H  AV    +  ++
Sbjct: 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNN 223
Query: 65  MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
             ++T S D++  +W++ +         D   R V   VG + AV   D   +   +   
Sbjct: 224 GMMVTCSKDRSIAVWDMASPT-------DITLRRV--LVGHRAAVNVVDFDDKYIVSASG 274
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            R  +       E V  L G +  I  A     +R ++S   D  +R+WD E G  L+  
Sbjct: 275 DRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL 332
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244
           +   GH++ +  +    D    ++G+ D   K+WD     L+       P   + +  L+
Sbjct: 333 E---GHEELVRCI--RFDNKRIVSGAYDGKIKVWD-----LVAALDPRAPAGTLCLRTLV 382
Query: 245 DH 246
           +H
Sbjct: 383 EH 384

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 23/230 (10%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RD 63
           + GH+  +  LKY   G +L S + D T  VW    G     + GHN  V C D+   ++
Sbjct: 158 LSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 64  SMTLITGSADQTAKLWNVETGAQL--------FTFNFDSPARS---VDFAVGDKLAVITT 112
              ++TGS D T  +W +   + +        +   F +P  +   V    G   +V T 
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 113 DPF--MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
                + ++ +     I  D A    + + IL G   RI   ++    +  ISA  D  +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQX--KCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
           RIWD E G+L       T     +  L + +D    ++ + D S + WDA
Sbjct: 335 RIWDLENGELXYTLQGHTA----LVGLLRLSD-KFLVSAAADGSIRGWDA 379

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 17/214 (7%)
Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMT 66
           H   L+   +      + + + D T  +W  ++G+ L ++ GH   V C D+  S    T
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 67  LITGSADQTAKLWNVETGAQLFTFN-FDSPARSVD-FAVGDKLAVITTDPFMELNSAIHV 124
            ++G  D+ A +W++ +G  +  F   +S   SV  +  GD  A  + D    L    + 
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL----YD 268
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            R  R+ A    ES++        ++ ++ G   R + +   D  + +WD   G  +   
Sbjct: 269 LRADREVAIYSKESIIF---GASSVDFSLSG---RLLFAGYNDYTINVWDVLKGSRVS-- 320
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
               GH+  +++L  + DG+ F +GS D + ++W
Sbjct: 321 -ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
           I++A  D    +WD E+G+LL +S    G       LA +  G+ F++G  DK A +WD 
Sbjct: 169 ILTASGDGTCALWDVESGQLL-QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 221 RTLELIKTYVT-ERPVNAVTMSP 242
           R+ + ++ + T E  VN+V   P
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYP 250

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 15/205 (7%)
Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDFAV-G 104
           T +GH+G V+  D + +   +++ S D    +WN  T  +        P      FA  G
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRT-II 162
             +A         L+SA  +  ++      G   V  +L G +G  +   + P   T +I
Sbjct: 121 QSVAC------GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 163 SAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWD 219
           +   D    +WD  TG+ +    S+  +GH   + SL+  + + + F++GS D + +LWD
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234
Query: 220 AR-TLELIKTYVT-ERPVNAVTMSP 242
            R T   ++TY   E  +N+V   P
Sbjct: 235 LRITSRAVRTYHGHEGDINSVKFFP 259

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 28/250 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 7   LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 67  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 121
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 122 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 175 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
Query: 233 RPVNAVTMSP 242
             V ++  SP
Sbjct: 232 DEVFSLAFSP 241

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 28/250 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSP 242
             V ++  SP
Sbjct: 238 DEVFSLAFSP 247

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 28/250 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSP 242
             V ++  SP
Sbjct: 238 DEVFSLAFSP 247

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 28/250 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSP 242
             V ++  SP
Sbjct: 238 DEVFSLAFSP 247

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 28/250 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSP 242
             V ++  SP
Sbjct: 238 DEVFSLAFSP 247

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 104/259 (40%), Gaps = 20/259 (7%)
Query: 6   MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVW-----FADNGERLGTYRGHNGAVWCCD 59
           +KGH   +T +       D++ S ++D T  +W       + G      RGH+  V    
Sbjct: 34  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFME 117
           +S D    ++GS D T +LW++ TG     F        SV F+  ++  V  + D  ++
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
           L + + V +              +   P            N  I+S G D +V++W+   
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---------NPIIVSCGWDKLVKVWNLAN 204
Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
            KL       TG+  T+T    + DGS   +G  D  A LWD    + + T      +NA
Sbjct: 205 CKLKTNHIGHTGYLNTVTV---SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 261
Query: 238 VTMSPLLDHVCIGEPQTIK 256
           +  SP    +C     +IK
Sbjct: 262 LCFSPNRYWLCAATGPSIK 280

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 24/270 (8%)
Query: 5   LMKGHERPLTYL------KYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-------RGH 51
           +++GH   +T +      K N+D  +L S ++D T  +W     E+ G +        GH
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 52  NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI 110
           N  V    +S+++   I+ S D+T +LW++ TG     F    S   SV F+  D   ++
Sbjct: 76  NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQIL 134
Query: 111 TTDPFMEL---NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167
           +     E+   N     K  + +  +       +   P  +    V  P      S G D
Sbjct: 135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV-QPFAPYFASVGWD 193
Query: 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-I 226
             +++W+T      +       H+  +  L+ + +G +  TG  DK   +WD   L    
Sbjct: 194 GRLKVWNTN----FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249
Query: 227 KTYVTERPVNAVTMSPLLDHVCIGEPQTIK 256
           + +     +N +  +P L  V +G  Q +K
Sbjct: 250 REFDAGSTINQIAFNPKLQWVAVGTDQGVK 279

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 104/259 (40%), Gaps = 20/259 (7%)
Query: 6   MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVW-----FADNGERLGTYRGHNGAVWCCD 59
           +KGH   +T +       D++ S ++D T  +W       + G      RGH+  V    
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFME 117
           +S D    ++GS D T +LW++ TG     F        SV F+  ++  V  + D  ++
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
           L + + V +              +   P            N  I+S G D +V++W+   
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---------NPIIVSCGWDKLVKVWNLAN 181
Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
            KL       TG+  T+T    + DGS   +G  D  A LWD    + + T      +NA
Sbjct: 182 CKLKTNHIGHTGYLNTVTV---SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 238
Query: 238 VTMSPLLDHVCIGEPQTIK 256
           +  SP    +C     +IK
Sbjct: 239 LCFSPNRYWLCAATGPSIK 257

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 107/250 (42%), Gaps = 28/250 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K + I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVD--IDKKASXIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D  V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    +   T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Query: 233 RPVNAVTMSP 242
             V ++  SP
Sbjct: 238 DEVFSLAFSP 247

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV-SRDS 64
           + GH+  +  L + +DG ++ S + D T  VW    G  +   + HN +VW   V S   
Sbjct: 100 LIGHQGNVCSLSF-QDG-VVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSE 155
Query: 65  MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
              +T SAD+T KLW  +   + F+   +   R         LAV+    F+  ++   +
Sbjct: 156 NKFLTASADKTIKLWQNDKVIKTFSGIHNDVVR--------HLAVVDDGHFISCSNDGLI 207
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKL 180
           K +     D       +L+  +G  +      L  N  I+S GED  VRIW  E G L
Sbjct: 208 KLVDXHTGD-------VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL 258

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 17/174 (9%)
Query: 76  AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
            +LWN ET  ++ +    ++P R+  F       ++ +D F          RI R     
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
            GE V+  +     I      P    ++S  +D  V++W+ E    L+++ +  GH+  +
Sbjct: 86  TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLD 245
             +A    D S F +G LD++ K+W     T     T   ER VN V   PL D
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 17/174 (9%)
Query: 76  AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
            +LWN ET  ++ +    ++P R+  F       ++ +D F          RI R     
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
            GE V+  +     I      P    ++S  +D  V++W+ E    L+++ +  GH+  +
Sbjct: 86  TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLD 245
             +A    D S F +G LD++ K+W     T     T   ER VN V   PL D
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 17/174 (9%)
Query: 76  AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
            +LWN ET  ++ +    ++P R+  F       ++ +D F          RI R     
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
            GE V+  +     I      P    ++S  +D  V++W+ E    L+++ +  GH+  +
Sbjct: 86  TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLD 245
             +A    D S F +G LD++ K+W     T     T   ER VN V   PL D
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13  LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
           +T + ++K G LL +   D    VW A   +R G   GH+  V C  V+ D M + TGS 
Sbjct: 284 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 343
Query: 73  DQTAKLWN 80
           D   K+WN
Sbjct: 344 DSFLKIWN 351

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-------ARSV 99
           T RGH   ++      DS  L++ S D    +W+  T  ++      S        A S 
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159
           ++     L  I +     L +     R++R+           L G  G ++   +   N+
Sbjct: 121 NYVACGGLDNICS--IYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDDNQ 167
Query: 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
            + S+G D    +WD ETG+        TG    + SL+ A D   F++G+ D SAKLWD
Sbjct: 168 IVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKLWD 223
Query: 220 ARTLELIKTYVT-ERPVNAVTMSP 242
            R     +T+   E  +NA+   P
Sbjct: 224 VREGMCRQTFTGHESDINAICFFP 247

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215
           P  R  +S   DA  ++WD   G   +     TGH+  I ++    +G+ F TGS D + 
Sbjct: 205 PDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDATC 261
Query: 216 KLWDARTLELIKTYVTERPVNAVT 239
           +L+D R  + + TY  +  +  +T
Sbjct: 262 RLFDLRADQELMTYSHDNIICGIT 285

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13  LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
           +T + ++K G LL +   D    VW A   +R G   GH+  V C  V+ D M + TGS 
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 73  DQTAKLWN 80
           D   K+WN
Sbjct: 333 DSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-------ARSV 99
           T RGH   ++      DS  L++ S D    +W+  T  ++      S        A S 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159
           ++     L  I +     L +     R++R+           L G  G ++   +   N+
Sbjct: 110 NYVACGGLDNICS--IYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDDNQ 156
Query: 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
            + S+G D    +WD ETG+        TG    + SL+ A D   F++G+ D SAKLWD
Sbjct: 157 IVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 220 ARTLELIKTYVT-ERPVNAVTMSP 242
            R     +T+   E  +NA+   P
Sbjct: 213 VREGMCRQTFTGHESDINAICFFP 236

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
            P  R  +S   DA  ++WD   G   +     TGH+  I ++    +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVT 239
            +L+D R  + + TY  +  +  +T
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGIT 274

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13  LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
           +T + ++K G LL +   D    VW A   +R G   GH+  V C  V+ D M + TGS 
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 73  DQTAKLWN 80
           D   K+WN
Sbjct: 333 DSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-------ARSV 99
           T RGH   ++      DS  L++ S D    +W+  T  ++      S        A S 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159
           ++     L  I +     L +     R++R+           L G  G ++   +   N+
Sbjct: 110 NYVACGGLDNICS--IYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDDNQ 156
Query: 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
            + S+G D    +WD ETG+        TG    + SL+ A D   F++G+ D SAKLWD
Sbjct: 157 IVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 220 ARTLELIKTYVT-ERPVNAVTMSP 242
            R     +T+   E  +NA+   P
Sbjct: 213 VREGMCRQTFTGHESDINAICFFP 236

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
            P  R  +S   DA  ++WD   G   +     TGH+  I ++    +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVT 239
            +L+D R  + + TY  +  +  +T
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGIT 274

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13  LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
           +T + ++K G LL +   D    VW A   +R G   GH+  V C  V+ D M + TGS 
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 73  DQTAKLWN 80
           D   K+WN
Sbjct: 333 DSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-------ARSV 99
           T RGH   ++      DS  L++ S D    +W+  T  ++      S        A S 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159
           ++     L  I +     L +     R++R+           L G  G ++   +   N+
Sbjct: 110 NYVACGGLDNICS--IYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDDNQ 156
Query: 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
            + S+G D    +WD ETG+        TG    + SL+ A D   F++G+ D SAKLWD
Sbjct: 157 IVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 220 ARTLELIKTYVT-ERPVNAVTMSP 242
            R     +T+   E  +NA+   P
Sbjct: 213 VREGMCRQTFTGHESDINAICFFP 236

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
            P  R  +S   DA  ++WD   G   +     TGH+  I ++    +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVT 239
            +L+D R  + + TY  +  +  +T
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGIT 274

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13  LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
           +T + ++K G LL +   D    VW A   +R G   GH+  V C  V+ D M + TGS 
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 73  DQTAKLWN 80
           D   K+WN
Sbjct: 333 DSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-------ARSV 99
           T RGH   ++      DS  L++ S D    +W+  T  ++      S        A S 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159
           ++     L  I +     L +     R++R+           L G  G ++   +   N+
Sbjct: 110 NYVACGGLDNICS--IYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDDNQ 156
Query: 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
            + S+G D    +WD ETG+        TG    + SL+ A D   F++G+ D SAKLWD
Sbjct: 157 IVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 220 ARTLELIKTYVT-ERPVNAVTMSP 242
            R     +T+   E  +NA+   P
Sbjct: 213 VREGMCRQTFTGHESDINAICFFP 236

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
            P  R  +S   DA  ++WD   G   +     TGH+  I ++    +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVT 239
            +L+D R  + + TY  +  +  +T
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGIT 274

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER----LGTYRGHNGAV----WC 57
           + GH + +  L++  DG  L S   D+   VW +  GE     L T+  H GAV    WC
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 58  CDVSRDSMTLITG--SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115
                 S  L TG  ++D+  ++WNV +GA L   +  S   S+ ++   K  +I+   F
Sbjct: 206 ---PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGF 261
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
            + N  +    I + P       V  LKG   R+      P   T+ SA  D  +R+W
Sbjct: 262 AQ-NQLV----IWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 17/174 (9%)
Query: 76  AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
            ++WN ET  ++ +    ++P R+  F       ++ +D F          RI R     
Sbjct: 37  VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
            GE V+  +     I      P    ++S  +D  V++W+ E    L+++ +  GH+  +
Sbjct: 86  TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLD 245
             +A    D S F +G LD++ K+W     T     T   ER VN V   PL D
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAV----WC 57
           + GH + +  L++  DG  L S   D+   VW +  GE     L T+  H GAV    WC
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 58  CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME 117
              S + +    G++D+  ++WNV +GA L   +  S   S+ ++   K  +I+   F +
Sbjct: 286 PWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGFAQ 343
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
            N  +    I + P       V  LKG   R+      P   T+ SA  D  +R+W
Sbjct: 344 -NQLV----IWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAV----WC 57
           + GH + +  L++  DG  L S   D+   VW +  GE     L T+  H GAV    WC
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 58  CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME 117
              S + +    G++D+  ++WNV +GA L   +  S   S+ ++   K  +I+   F +
Sbjct: 297 PWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGFAQ 354
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
            N  +    I + P       V  LKG   R+      P   T+ SA  D  +R+W
Sbjct: 355 -NQLV----IWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 137 ESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
           E V+ L+G   R+    W P  + ++ SAG D ++ +WD  TG  +     +  H  TI 
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV-HPDTIY 180
Query: 196 SLAKAADGSHFLTGSLDKSAKLWDARTLELI----KTYVTERPVNAVTMS 241
           S+  + DG+   T   DK  ++ + R   ++    + +   RPV+AV +S
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 110/261 (42%), Gaps = 22/261 (8%)
Query: 6   MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVW-FADNGERLGTYR----GHNGAVWCCD 59
           M+ H   +T +    D  D++ S ++D +  +W    + +  G  +    GH+  V    
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITT-DPFME 117
           +S D    ++GS D   +LW++  G     F        SV F++ ++  V  + D  ++
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LNRTIISAGEDAIVRIWDT 175
           L + +   +       +GGE      G +  ++   + P  L  TI+SA  D  V++W+ 
Sbjct: 498 LWNTLGECKYT---ISEGGE------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV 235
              KL        GH   ++++A + DGS   +G  D    LWD    + + +      +
Sbjct: 549 SNCKL---RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVI 605
Query: 236 NAVTMSPLLDHVCIGEPQTIK 256
           +A+  SP    +C      IK
Sbjct: 606 HALCFSPNRYWLCAATEHGIK 626

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-------GHNGAVWCCDVS 61
           H + +  ++YN DG L  S   D T  ++   +G + G +         H+G+V+    S
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 62  RDSMTLITGSADQTAKLWNVET 83
            D   + + SAD+T K+WNV T
Sbjct: 249 PDGTKIASASADKTIKIWNVAT 270

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 137 ESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
           E V+ L+G   R+    W P  + ++ SAG D ++ +WD  TG  +     +  H  TI 
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-HPDTIY 180
Query: 196 SLAKAADGSHFLTGSLDKSAKLWDARTLELI----KTYVTERPVNAVTMS 241
           S+  + DG+   T   DK  ++ + R   ++    + +   RPV+AV +S
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 204
           P  R     W P    + S G D  +RIW TE    + +S    GH++T+  +A +  G+
Sbjct: 15  PDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN 74
Query: 205 HFLTGSLDKSAKLW--DARTLELIKTYVT-ERPVNAVTMSP 242
           +  + S D +  +W  +    E + T    E  V +V  +P
Sbjct: 75  YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 30/180 (16%)
Query: 63  DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDK---LAVITTDPFMEL 118
           D+    + S D+T K+W+  T      FNF+    S   + V  K   +AV T  P ++L
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE- 176
                          + G    IL+G +  I    W P    I+ +A  D+ V++WD   
Sbjct: 171 CDL------------KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
Query: 177 -TGKLL-------KESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224
            +G L+       K+S       T H   +  L   +DG H LT   D   +LW++   E
Sbjct: 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
           + H   +T LK+   G+ L S ++D    +W   +G    T  GH   V    +      
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 67  LITGSADQTAKLWNVETGAQLFTFN 91
           +++ S D T +LW   TG  + TFN
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFN 217

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSH 205
            I +  + P    +IS+ +D  ++IW  + G     S+  T  GH+ T+T +A    G +
Sbjct: 138 EITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRN 192
Query: 206 FLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLL 244
            L+ SLD + +LW+  T   I T+   E P + V    L 
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF 232

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
           + H   +T LK+   G+ L S ++D    +W   +G    T  GH   V    +      
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 67  LITGSADQTAKLWNVETGAQLFTFN 91
           +++ S D T +LW   TG  + TFN
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFN 220

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSH 205
            I +  + P    +IS+ +D  ++IW  + G     S+  T  GH+ T+T +A    G +
Sbjct: 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRN 195
Query: 206 FLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLL 244
            L+ SLD + +LW+  T   I T+   E P + V    L 
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF 235

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 22/243 (9%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSR 62
           M GH+  +  L +N+   +L S ++    H   V  A++  ++GT +GH+  V       
Sbjct: 172 MAGHQARVGCLSWNRH--VLSSGSRSGAIHHHDVRIANH--QIGTLQGHSSEVCGLAWRS 227
Query: 63  DSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121
           D + L +G  D   ++W+  +    FT  N ++  ++V +       + T    M+    
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD---- 283
Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGK 179
              K+I    A  G     +  G Q  +   +W P ++ I+S     D  + IW   +  
Sbjct: 284 ---KQIHFWNAATGARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338
Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TYVTERPVNA 237
           L K+ D    H   +   A + DG    T + D++ K W     + +K    +T+ P ++
Sbjct: 339 LTKQVDIP-AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSS 397
Query: 238 VTM 240
           +T+
Sbjct: 398 ITI 400

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 8   GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
           GH  P++ L++N    LL S + D T  +W   NG     + GH+ ++       D   +
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KV 303
Query: 68  ITGSADQTAKLWNVETGAQL 87
           I+ S D + +LW+++    L
Sbjct: 304 ISCSMDGSVRLWSLKQNTLL 323

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 102/229 (44%), Gaps = 23/229 (10%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           ++GH+  +  +  +    +  S + D    +W  +NG+++ +        W    S DS 
Sbjct: 76  LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135
Query: 66  TLITGSADQTAKLWNVETGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNS 120
            L TG+      ++ VE+G + ++ +       S A S D   G  LA    D       
Sbjct: 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD---GKYLASGAIDGI----- 187
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
            I++  IA       G+ +  L+G    I    + P ++ +++A +D  ++I+D +   L
Sbjct: 188 -INIFDIAT------GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229
              +   +GH   + ++A   D +HF++ S DKS K+WD  T   + T+
Sbjct: 241 ---AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.98
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.84
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.84
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.81
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.74
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.72
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.72
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.71
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.71
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.69
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.68
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.66
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.65
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.64
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.62
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.58
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.54
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.53
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.53
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.52
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.52
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.51
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.51
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.47
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.45
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.41
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.39
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.39
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.38
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.37
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.36
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.32
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.28
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.28
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.27
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.27
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.23
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.22
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.19
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.15
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.13
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.13
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.1
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.1
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.02
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.01
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.01
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.95
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.94
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.93
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.89
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.85
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.81
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.8
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.78
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.78
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.77
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.76
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.72
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.72
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.71
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.71
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.7
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.69
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.69
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.68
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.66
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.65
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.56
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.56
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.55
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.54
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.54
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.5
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.43
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.43
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.4
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.4
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.34
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.32
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.3
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.24
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.23
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.19
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.18
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.18
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.18
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.17
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.16
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.15
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.13
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.12
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.09
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.05
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.03
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.96
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.94
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.92
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.92
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.88
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.88
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.83
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.79
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.7
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.66
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.63
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.6
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.57
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.57
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.52
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.51
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.5
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.41
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.33
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.22
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.21
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.13
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.09
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.03
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.85
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.8
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.78
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.74
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.73
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.69
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.57
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.44
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.41
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.31
3ott_A	758	Two-component system sensor histidine kinase; beta	96.18
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.15
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.15
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.11
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.09
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.08
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.06
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.98
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.88
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.76
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.58
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.56
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.11
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.94
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.94
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.72
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.54
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.05
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.89
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.36
3ott_A	758	Two-component system sensor histidine kinase; beta	92.88
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.6
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.3
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	91.78
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	90.67
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	89.85
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.97
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	88.71
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	88.62
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	88.09
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	88.05
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	87.14
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	87.07
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	86.2
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	85.64
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	84.88
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.09
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.91
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	83.18
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	82.1
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	81.52

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-44  Score=287.99  Aligned_cols=254  Identities=13%  Similarity=0.173  Sum_probs=224.5

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      .++.+|.+.|++++|+|++++|++|+.||.|++||+++++.+..+..|..+|.+++|+|++++|++|+.|++|++||+++
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~   86 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC-CCCEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTI  161 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l  161 (305)
                      ++.+..+. +...|.+++|+|++.++++++.     ++.+.+|++...     ......+.+|...|.+++|+| ++..|
T Consensus        87 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-----D~~v~lWd~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~~~l  156 (304)
T 2ynn_A           87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNWENN-----WALEQTFEGHEHFVMCVAFNPKDPSTF  156 (304)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSCEEEEEGGGT-----TEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred             CcEEEEEeCCCCcEEEEEEcCCCCEEEEECC-----CCeEEEEECCCC-----cchhhhhcccCCcEEEEEECCCCCCEE
Confidence            99988887 8889999999999999988875     667888887532     245567889999999999999 57899


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  238 (305)
                      ++|+.|+.|++||++++.....+..  ++...+..+.|+|  ++.+|++++.|++|++||+++++++..+. |...|.++
T Consensus       157 ~sgs~D~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~  234 (304)
T 2ynn_A          157 ASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA  234 (304)
T ss_dssp             EEEETTSEEEEEETTCSSCSEEEEC--CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCCccceecc--CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEE
Confidence            9999999999999988776655542  4667899999987  77899999999999999999999999988 88899999


Q ss_pred             EecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhh
Q 021925          239 TMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYN  274 (305)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (305)
                      +|+|++++|++|+.|+.     +++|+.........
T Consensus       235 ~~~p~~~~l~s~s~Dg~-----i~iWd~~~~~~~~~  265 (304)
T 2ynn_A          235 VFHPTLPIIISGSEDGT-----LKIWNSSTYKVEKT  265 (304)
T ss_dssp             EECSSSSEEEEEETTSC-----EEEEETTTCCEEEE
T ss_pred             EECCCCCEEEEEcCCCe-----EEEEECCCCceeee
Confidence            99999999999999998     66776654444433

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.6e-44  Score=286.40  Aligned_cols=242  Identities=20%  Similarity=0.332  Sum_probs=222.8

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|...|.+++|+|++..+++++.|++|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++||++++
T Consensus        75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~  154 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG  154 (321)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC
T ss_pred             eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      +....+. +...+.+++|+|+++++++++.     ++.+.+|++.      .++.+..+.+|...|.+++|+|++++|++
T Consensus       155 ~~~~~~~~~~~~v~~~~~spdg~~lasg~~-----dg~i~iwd~~------~~~~~~~~~~h~~~v~~l~~spd~~~l~s  223 (321)
T 3ow8_A          155 KKEYSLDTRGKFILSIAYSPDGKYLASGAI-----DGIINIFDIA------TGKLLHTLEGHAMPIRSLTFSPDSQLLVT  223 (321)
T ss_dssp             SEEEEEECSSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSCCCEEEECTTSCEEEE
T ss_pred             ceeEEecCCCceEEEEEECCCCCEEEEEcC-----CCeEEEEECC------CCcEEEEEcccCCceeEEEEcCCCCEEEE
Confidence            9888776 6678999999999999998865     5567777763      34677888999999999999999999999


Q ss_pred             eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~  242 (305)
                      |+.||.|++||+++++....+.   +|...|.+++|+|++++|++++.|++|++||+++++++.++. |...|.+++|+|
T Consensus       224 ~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~  300 (321)
T 3ow8_A          224 ASDDGYIKIYDVQHANLAGTLS---GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG  300 (321)
T ss_dssp             ECTTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             EcCCCeEEEEECCCcceeEEEc---CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC
Confidence            9999999999999999888887   799999999999999999999999999999999999999887 888999999999


Q ss_pred             CCCcEEEeeCCcEEEEEEeehhh
Q 021925          243 LLDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       243 ~~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                      +++.|++++.|+.     +++|+
T Consensus       301 ~g~~l~s~~~d~~-----i~vwd  318 (321)
T 3ow8_A          301 NGSKIVSVGDDQE-----IHIYD  318 (321)
T ss_dssp             TSSEEEEEETTCC-----EEEEE
T ss_pred             CCCEEEEEeCCCe-----EEEEe
Confidence            9999999999987     55554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-44  Score=295.57  Aligned_cols=249  Identities=22%  Similarity=0.290  Sum_probs=226.7

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ..+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|.+.|.+++|+|++++|++|+.|++|++||+++
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~  181 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG  181 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      ++++..+. +...|.+++|+|++..+++++.     ++.+.+|++.      .+..+..+.+|...|.++.++|++++++
T Consensus       182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~-----D~~i~~wd~~------~~~~~~~~~~h~~~v~~~~~~~~g~~l~  250 (410)
T 1vyh_C          182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASR-----DKTIKMWEVQ------TGYCVKTFTGHREWVRMVRPNQDGTLIA  250 (410)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEET-----TSEEEEEETT------TCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             CceeEEEcCCCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEECC------CCcEEEEEeCCCccEEEEEECCCCCEEE
Confidence            98888776 7889999999999998888765     5677788764      3467788899999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC--------------------CCEEEEEeCCCeEEEEEcCC
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--------------------GSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~  222 (305)
                      +|+.|+.|++||+++++....+.   +|...|.+++|+|+                    +.+|++|+.||.|++||+++
T Consensus       251 s~s~D~~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          251 SCSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             EEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             EEcCCCeEEEEECCCCceeeEec---CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            99999999999999999888887   79999999999996                    67899999999999999999


Q ss_pred             ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925          223 LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       223 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
                      ++++..+. |...|.+++|+|++++|++|+.|+.     +++|+......
T Consensus       328 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-----i~vwd~~~~~~  372 (410)
T 1vyh_C          328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-----LRVWDYKNKRC  372 (410)
T ss_dssp             TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-----EEEECCTTSCC
T ss_pred             CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCce
Confidence            99998887 8889999999999999999999997     66776644433

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-43  Score=293.54  Aligned_cols=243  Identities=23%  Similarity=0.383  Sum_probs=223.4

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ..+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+++
T Consensus       144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~  223 (410)
T 1vyh_C          144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT  223 (410)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC-----
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-----  157 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----  157 (305)
                      ++++..+. +...+.++.++|++.++++++.     ++.+.+|++.      ..+....+.+|...|.+++|+|+     
T Consensus       224 ~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-----D~~v~vwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~  292 (410)
T 1vyh_C          224 GYCVKTFTGHREWVRMVRPNQDGTLIASCSN-----DQTVRVWVVA------TKECKAELREHRHVVECISWAPESSYSS  292 (410)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TCCEEEEECCCSSCEEEEEECCSCGGGG
T ss_pred             CcEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCeEEEEECC------CCceeeEecCCCceEEEEEEcCcccccc
Confidence            99988887 7788999999999999988875     5667777764      34567788899999999999996     


Q ss_pred             ---------------CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          158 ---------------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       158 ---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                                     +.+|++|+.|+.|++||+++++++..+.   +|...|++++|+|++++|++|+.||.|++||+++
T Consensus       293 ~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             GGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             hhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence                           6789999999999999999999988887   7999999999999999999999999999999999


Q ss_pred             ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925          223 LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       223 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                      ++++..+. |...|++++|+|++++|++|+.|+.     +++|+
T Consensus       370 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~-----i~vW~  408 (410)
T 1vyh_C          370 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT-----VKVWE  408 (410)
T ss_dssp             SCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE-----EEEEC
T ss_pred             CceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc-----EEEEe
Confidence            99998887 8889999999999999999999997     56664

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.8e-43  Score=281.09  Aligned_cols=248  Identities=21%  Similarity=0.274  Sum_probs=218.3

Q ss_pred             EecccccceEEEEEcCC----CCEEEEeeCCCceEEEEcCCCee--eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925            5 LMKGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~----~~~l~s~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v   78 (305)
                      .+++|.+.|.+++|+|+    +++|++|+.|++|++|++.+++.  ...+.+|...|.+++|++++..+++++.|++|++
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l  106 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL  106 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            35799999999999985    56899999999999999987753  4568899999999999999999999999999999


Q ss_pred             EecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        79 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      ||+++++.+..+. +...+.+++|+|++..+++++.     .+.+.+|++.      ..+....+..|...+.+++|+|+
T Consensus       107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-----dg~v~i~~~~------~~~~~~~~~~~~~~v~~~~~spd  175 (321)
T 3ow8_A          107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-----VGKVNIFGVE------SGKKEYSLDTRGKFILSIAYSPD  175 (321)
T ss_dssp             EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-----TSEEEEEETT------TCSEEEEEECSSSCEEEEEECTT
T ss_pred             EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCcEEEEEcC------CCceeEEecCCCceEEEEEECCC
Confidence            9999999888887 6678899999999999998875     4556666653      34567778889999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN  236 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~  236 (305)
                      +++|++|+.||.|++||+++++.+..+.   +|..+|++++|+|++++|++++.||.|++||+++++.+..+. |...|.
T Consensus       176 g~~lasg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~  252 (321)
T 3ow8_A          176 GKYLASGAIDGIINIFDIATGKLLHTLE---GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL  252 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEc---ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceE
Confidence            9999999999999999999999988887   799999999999999999999999999999999999988887 888999


Q ss_pred             EEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925          237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
                      +++|+|++++|++|+.|+.     +++|++.....
T Consensus       253 ~~~~sp~~~~l~s~s~D~~-----v~iwd~~~~~~  282 (321)
T 3ow8_A          253 NVAFCPDDTHFVSSSSDKS-----VKVWDVGTRTC  282 (321)
T ss_dssp             EEEECTTSSEEEEEETTSC-----EEEEETTTTEE
T ss_pred             EEEECCCCCEEEEEeCCCc-----EEEEeCCCCEE
Confidence            9999999999999999997     66676654433

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-42  Score=279.57  Aligned_cols=244  Identities=18%  Similarity=0.299  Sum_probs=216.0

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+++|.++|++++|+|++++|++|+.||+|++||..+++.+..+..|...|.+++|+|++++|++++.|+.+++||+.+.
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~  129 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR  129 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTC
T ss_pred             eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccC
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             C----eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925           85 A----QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (305)
Q Consensus        85 ~----~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (305)
                      +    ....+. +...+.++.|++++.++..+.      ++.+.+|++.      .++....+.+|.+.|.+++|+|+++
T Consensus       130 ~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~------d~~i~~wd~~------~~~~~~~~~~h~~~v~~~~~~~~~~  197 (340)
T 1got_B          130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG------DTTCALWDIE------TGQQTTTFTGHTGDVMSLSLAPDTR  197 (340)
T ss_dssp             SBSCEEEEEEECCSSCEEEEEEEETTEEEEEET------TSCEEEEETT------TTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCcceeEEEecCCCccEEEEEECCCCcEEEEEC------CCcEEEEECC------CCcEEEEEcCCCCceEEEEECCCCC
Confidence            4    233333 778899999999988665554      4556677653      3467788899999999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC---CCee
Q 021925          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPVN  236 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~v~  236 (305)
                      ++++|+.||.|++||+++++....+.   +|...|++++|+|++++|++|+.||+|++||+++++.+..+.+.   ..|.
T Consensus       198 ~l~sg~~d~~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~  274 (340)
T 1got_B          198 LFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEc---CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceE
Confidence            99999999999999999999888887   79999999999999999999999999999999999888877643   3799


Q ss_pred             EEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      +++|+|++++|++|+.++.     +++|+...
T Consensus       275 ~~~~s~~g~~l~~g~~d~~-----i~vwd~~~  301 (340)
T 1got_B          275 SVSFSKSGRLLLAGYDDFN-----CNVWDALK  301 (340)
T ss_dssp             EEEECTTSSEEEEEETTSE-----EEEEETTT
T ss_pred             EEEECCCCCEEEEECCCCe-----EEEEEccc
Confidence            9999999999999999987     66666543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.9e-42  Score=272.88  Aligned_cols=237  Identities=25%  Similarity=0.406  Sum_probs=213.5

Q ss_pred             EecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCC-----CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925            5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADN-----GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v   78 (305)
                      .|+||.++|++++|+|++ ++|++|+.|++|++|++.+     +.++..+.+|...|.+++|+|++++|++++.|++|++
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~   91 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL   91 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence            588999999999999965 8999999999999999864     3456788999999999999999999999999999999


Q ss_pred             EecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        79 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      ||+++++.+..+. +...|.+++|+|++..+++++.     ++.+.+|++.       ......+.+|...+.++.++|.
T Consensus        92 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----D~~i~vwd~~-------~~~~~~~~~h~~~v~~~~~~~~  159 (319)
T 3frx_A           92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR-----DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPN  159 (319)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET-----TSCEEEEETT-------SCEEEEECCCSSCEEEEEECCC
T ss_pred             EECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEECC-------CCeEEEEeccCCcEEEEEEccC
Confidence            9999999888877 8889999999999999988875     5667777763       3567788899999999999995


Q ss_pred             C------CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925          158 N------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (305)
Q Consensus       158 ~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  231 (305)
                      .      ..+++++.|+.|++||+++.+....+.   +|...|++++|+|++++|++++.||.|++||+++++++..+..
T Consensus       160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~  236 (319)
T 3frx_A          160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA  236 (319)
T ss_dssp             ------CCEEEEEETTSCEEEEETTTTEEEEEEC---CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCCccEEEEEeCCCEEEEEECCcchhheeec---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence            4      489999999999999999998888776   7999999999999999999999999999999999999999998


Q ss_pred             CCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          232 ERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       232 ~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      ..+|.+++|+|++.++++++.++..
T Consensus       237 ~~~v~~~~~sp~~~~la~~~~~~i~  261 (319)
T 3frx_A          237 QDEVFSLAFSPNRYWLAAATATGIK  261 (319)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCcE
Confidence            8899999999999999999887744

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.6e-41  Score=275.47  Aligned_cols=240  Identities=20%  Similarity=0.313  Sum_probs=208.9

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE-------------------------------------
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-------------------------------------   46 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~-------------------------------------   46 (305)
                      ..+.+|.++|++++|+|++++|++|+.||+|++||..+++...                                     
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~  137 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF  137 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence            3588999999999999999999999999999999987654432                                     


Q ss_pred             -----------EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecC--CceEEEeC
Q 021925           47 -----------TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVG--DKLAVITT  112 (305)
Q Consensus        47 -----------~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~~~  112 (305)
                                 .+.+|.+.|.+++|+|+++.|++++.|++|++||+++++.+..+. +...+.+++++|.  +..+++++
T Consensus       138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs  217 (354)
T 2pbi_B          138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG  217 (354)
T ss_dssp             CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred             cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence                       233577788999999999999999999999999999999988887 7888999999874  56777765


Q ss_pred             CcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCcc
Q 021925          113 DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK  192 (305)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  192 (305)
                      .     ++.+.+|++.      .++.+..+.+|...|.+++|+|++++|++++.|+.|++||++.++.+..+.. ..+..
T Consensus       218 ~-----Dg~v~~wd~~------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-~~~~~  285 (354)
T 2pbi_B          218 C-----DKKAMVWDMR------SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK-ESIIF  285 (354)
T ss_dssp             T-----TSCEEEEETT------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCS
T ss_pred             C-----CCeEEEEECC------CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCccc
Confidence            4     5677778764      3467788899999999999999999999999999999999999887766642 13445


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      .+.+++|+|++++|++|+.|+.|++||+.+++.+..+. |..+|.+++|+|++++|++|+.|+.
T Consensus       286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence            78999999999999999999999999999999888876 8899999999999999999999987

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.9e-42  Score=277.25  Aligned_cols=241  Identities=17%  Similarity=0.197  Sum_probs=198.7

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEE----ecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT----YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~----~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      .|...|++++|+|++ .|++|+.||+|+|||+++++.+..    ..+|.+.|.+++|+|++++|++|+.||+|++||+++
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            456789999999986 688999999999999998875543    448999999999999999999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE--eccCCCeeEEEEcCC-C
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL--KGPQGRINRAVWGPL-N  158 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~-~  158 (305)
                      ++.+..+. +...|.+++|++++. ++++++.     ++.+.+|++..      .+....+  ..+...+.+++|+|+ +
T Consensus       159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~-----D~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~p~~~  227 (344)
T 4gqb_B          159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSE-----DNRILLWDTRC------PKPASQIGCSAPGYLPTSLAWHPQQS  227 (344)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSCTTEEEEEET-----TSCEEEEETTS------SSCEEECC----CCCEEEEEECSSCT
T ss_pred             CcEEEEEcCcCCceEEEEecCCCCCceeeecc-----ccccccccccc------cceeeeeecceeeccceeeeecCCCC
Confidence            99998887 889999999999885 5555543     45677777643      2334433  345667899999995 4


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA  237 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~  237 (305)
                      ++|++|+.||.|++||+++++++..+.   +|...|++++|+|++ ++|++|+.|++|++||+++++++....|...|++
T Consensus       228 ~~l~sg~~dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~  304 (344)
T 4gqb_B          228 EVFVFGDENGTVSLVDTKSTSCVLSSA---VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRD  304 (344)
T ss_dssp             TEEEEEETTSEEEEEESCC--CCEEEE---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEE
T ss_pred             cceEEeccCCcEEEEECCCCcEEEEEc---CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEE
Confidence            688999999999999999999988887   899999999999998 5799999999999999999988766559999999


Q ss_pred             EEecCCCCc-EEEeeCCcEEEEEEeehhhhhh
Q 021925          238 VTMSPLLDH-VCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       238 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      ++|+|+++. |++|+.|+.     ++.|.+..
T Consensus       305 v~~sp~~~~llas~s~D~~-----v~~w~v~~  331 (344)
T 4gqb_B          305 ATWSPLNHSLLTTVGWDHQ-----VVHHVVPT  331 (344)
T ss_dssp             EEECSSSTTEEEEEETTSC-----EEEEECCC
T ss_pred             EEEeCCCCeEEEEEcCCCe-----EEEEECCC
Confidence            999999986 557788887     45555433

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.7e-41  Score=268.80  Aligned_cols=246  Identities=19%  Similarity=0.330  Sum_probs=203.5

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC--CeeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEE
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--GERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLW   79 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vw   79 (305)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+  .+.+.++.+|.++|.+++|+|  ++++|++|+.||+|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45789999999999999999999999999999999974  367789999999999999986  48899999999999999


Q ss_pred             ecCCCC--eeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925           80 NVETGA--QLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (305)
Q Consensus        80 d~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (305)
                      |+++++  .+..+. +...+.+++|+|+  +..+++++.     ++.+.+|++....    ......+.+|...|.+++|
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~-----d~~v~~wd~~~~~----~~~~~~~~~h~~~v~~~~~  153 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS-----DGKVSVVEFKENG----TTSPIIIDAHAIGVNSASW  153 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-----TSEEEEEEBCSSS----CBCCEEEECCSSCEEEEEE
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC-----CCcEEEEEecCCC----ceeeeeeecccCccceEee
Confidence            998874  444444 7789999999997  677777765     5667777765321    1123567899999999999


Q ss_pred             cCC-------------CCEEEEeeCCCcEEEEeCCCCc----EeeeeccccCCccceEEEEEcCCC---CEEEEEeCCCe
Q 021925          155 GPL-------------NRTIISAGEDAIVRIWDTETGK----LLKESDKETGHKKTITSLAKAADG---SHFLTGSLDKS  214 (305)
Q Consensus       155 ~~~-------------~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~  214 (305)
                      +|+             +++|++|+.|+.|++||+++++    ....+.   +|...|.+++|+|++   ++|++++.|++
T Consensus       154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~---~H~~~V~~v~~sp~~~~~~~las~s~D~~  230 (297)
T 2pm7_B          154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDVAWSPTVLLRSYMASVSQDRT  230 (297)
T ss_dssp             CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec---CCCCceEEEEECCCCCCceEEEEEECCCc
Confidence            997             5799999999999999998765    444554   899999999999984   88999999999


Q ss_pred             EEEEEcCCce---EEEEE---eeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          215 AKLWDARTLE---LIKTY---VTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       215 i~iwd~~~~~---~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                      |++||+++..   ....+   .+...|.+++|+|++++|++++.|+.     +++|+.
T Consensus       231 v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~-----v~lw~~  283 (297)
T 2pm7_B          231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK-----VTLWKE  283 (297)
T ss_dssp             EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC-----EEEEEE
T ss_pred             EEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc-----EEEEEE
Confidence            9999998643   11222   26778999999999999999999987     555544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.7e-41  Score=267.23  Aligned_cols=239  Identities=19%  Similarity=0.279  Sum_probs=207.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|..+|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.||+|++||++++
T Consensus        50 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~  129 (304)
T 2ynn_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (304)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred             EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             Cee-EEEe-eCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC--CCC
Q 021925           85 AQL-FTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LNR  159 (305)
Q Consensus        85 ~~~-~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~  159 (305)
                      ... ..+. +...+.+++|+| ++..+++++.     ++.+.+|++...     ........+|...+..+.++|  +++
T Consensus       130 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~-----D~~v~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (304)
T 2ynn_A          130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCL-----DRTVKVWSLGQS-----TPNFTLTTGQERGVNYVDYYPLPDKP  199 (304)
T ss_dssp             TEEEEEECCCCSCEEEEEECTTCTTEEEEEET-----TSEEEEEETTCS-----SCSEEEECCCTTCEEEEEECCSTTCC
T ss_pred             cchhhhhcccCCcEEEEEECCCCCCEEEEEeC-----CCeEEEEECCCC-----CccceeccCCcCcEEEEEEEEcCCCC
Confidence            544 3444 788899999999 5677777654     567778876432     122333456678899999987  678


Q ss_pred             EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  238 (305)
                      +|++|+.|+.|++||+++++++..+.   +|...|.+++|+|++++|++|+.||+|++||+++++.+..+. +...+.++
T Consensus       200 ~l~s~s~D~~i~iWd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~  276 (304)
T 2ynn_A          200 YMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI  276 (304)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEE
T ss_pred             EEEEEcCCCeEEEEeCCCCccceeeC---CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEE
Confidence            99999999999999999999998887   899999999999999999999999999999999999999988 67889999


Q ss_pred             EecCCCC--cEEEeeCCcEE
Q 021925          239 TMSPLLD--HVCIGEPQTIK  256 (305)
Q Consensus       239 ~~~~~~~--~l~~~~~~~~~  256 (305)
                      +++|++.  ++++|+.++..
T Consensus       277 ~~~~~~~~~~~asg~~~g~~  296 (304)
T 2ynn_A          277 ATHPTGRKNYIASGFDNGFT  296 (304)
T ss_dssp             EECTTCGGGCEEEEETTEEE
T ss_pred             EECCCCCceEEEEecCCceE
Confidence            9999886  47777777654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.6e-41  Score=270.93  Aligned_cols=238  Identities=20%  Similarity=0.294  Sum_probs=212.7

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      .+..|...|.+++|+|++++|++|+.|+.|++|++.++    +....+.+|.+.|.++.|++++. +++++.|++|++||
T Consensus        92 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd  170 (340)
T 1got_B           92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWD  170 (340)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEE
Confidence            46789999999999999999999999999999999865    35667889999999999998774 89999999999999


Q ss_pred             cCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925           81 VETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (305)
Q Consensus        81 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (305)
                      +++++.+..+. +...+.+++|+|++.++++++.     ++.+.+|++.      .......+.+|...|.+++|+|+++
T Consensus       171 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~-----d~~v~~wd~~------~~~~~~~~~~h~~~v~~v~~~p~~~  239 (340)
T 1got_B          171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-----DASAKLWDVR------EGMCRQTFTGHESDINAICFFPNGN  239 (340)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TCSEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC-----CCcEEEEECC------CCeeEEEEcCCcCCEEEEEEcCCCC
Confidence            99999888887 7889999999999999888765     5677778764      3467788899999999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  238 (305)
                      +|++|+.||.|++||+++++.+..+.. ..+...|++++|+|++++|++|+.||.|++||+.+++.+..+. |..+|.++
T Consensus       240 ~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  318 (340)
T 1got_B          240 AFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL  318 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEcc-CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEE
Confidence            999999999999999999888776642 1344579999999999999999999999999999999988887 88999999


Q ss_pred             EecCCCCcEEEeeCCcE
Q 021925          239 TMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       239 ~~~~~~~~l~~~~~~~~  255 (305)
                      +|+|++++|++|+.|+.
T Consensus       319 ~~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          319 GVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             EECTTSSCEEEEETTSC
T ss_pred             EEcCCCCEEEEEcCCcc
Confidence            99999999999999987

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-41  Score=278.55  Aligned_cols=248  Identities=18%  Similarity=0.321  Sum_probs=199.1

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe----
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN----   80 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd----   80 (305)
                      .++||.++|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++++|++|+.|+.+++||    
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~  140 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ  140 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence            5889999999999999999999999999999999999998888888888888888887766655555555555554    


Q ss_pred             ----------------------------------------------cCCCCeeEEEe------eCCCceEEEEec-CCce
Q 021925           81 ----------------------------------------------VETGAQLFTFN------FDSPARSVDFAV-GDKL  107 (305)
Q Consensus        81 ----------------------------------------------~~~~~~~~~~~------~~~~v~~~~~~~-~~~~  107 (305)
                                                                    +++++.+..+.      +...+.++.+++ ++.+
T Consensus       141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  220 (380)
T 3iz6_a          141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM  220 (380)
T ss_dssp             SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred             ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE
Confidence                                                          44444444431      345567777766 5666


Q ss_pred             EEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc
Q 021925          108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE  187 (305)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  187 (305)
                      +++++.     ++.+.+|++..     ..+.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+++++.+..+...
T Consensus       221 l~sgs~-----D~~v~~wd~~~-----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~  290 (380)
T 3iz6_a          221 FISGSC-----DTTVRLWDLRI-----TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE  290 (380)
T ss_dssp             EEEEET-----TSCEEEEETTT-----TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEEC-----CCeEEEEECCC-----CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence            666554     55677777642     23567788999999999999999999999999999999999999888776532


Q ss_pred             c----CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE----e-eCCCeeEEEecCCCCcEEEeeCCcEEEE
Q 021925          188 T----GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY----V-TERPVNAVTMSPLLDHVCIGEPQTIKFM  258 (305)
Q Consensus       188 ~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~  258 (305)
                      .    .+...|++++|+|+|++|++|+.||.|++||+.+++.+..+    . |...|.+++|+|+|++|++|+.|+.   
T Consensus       291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~---  367 (380)
T 3iz6_a          291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN---  367 (380)
T ss_dssp             CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC---
T ss_pred             ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC---
Confidence            1    12345899999999999999999999999999999888776    2 7889999999999999999999997   


Q ss_pred             EEeehhhhh
Q 021925          259 LLVYLFVLF  267 (305)
Q Consensus       259 ~~~~~~~~~  267 (305)
                        +++|++.
T Consensus       368 --i~iW~~~  374 (380)
T 3iz6_a          368 --LKIWAFS  374 (380)
T ss_dssp             --EEEEECC
T ss_pred             --EEEEecC
Confidence              6666543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-40  Score=269.23  Aligned_cols=251  Identities=35%  Similarity=0.601  Sum_probs=224.6

Q ss_pred             CceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         2 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      +++.+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC-----CCceEEEEeccCC--CeeEEEE
Q 021925           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-----GGESVLILKGPQG--RINRAVW  154 (305)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~i~~~~~  154 (305)
                      ++++.+..+.+...+.+++|+|++..++++........+.+.+|++.......     .......+..|..  .+.+++|
T Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            99999999999999999999999999999876533334677778776543221     1234455666766  9999999


Q ss_pred             cCCCCEEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC
Q 021925          155 GPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (305)
Q Consensus       155 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  233 (305)
                      +|++++|++++.||.|++||+++ .+.+..+.   .|...|.+++|+|++++|++++.||.|++||+++++.+..+.+..
T Consensus       184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  260 (369)
T 3zwl_B          184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSID---LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC  260 (369)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTTTEEEEEEE---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe---cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC
Confidence            99999999999999999999998 67777776   688999999999999999999999999999999999999999999


Q ss_pred             CeeEEEecCCCCcEEEeeCCcE
Q 021925          234 PVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       234 ~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ++.+++|+|+++++++++.++.
T Consensus       261 ~~~~~~~~~~~~~l~~~~~~~~  282 (369)
T 3zwl_B          261 PLNTAVITPLKEFIILGGGQEA  282 (369)
T ss_dssp             CEEEEEECSSSSEEEEEECCC-
T ss_pred             CceeEEecCCCceEEEeecCCC
Confidence            9999999999999999988774

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.8e-40  Score=265.61  Aligned_cols=240  Identities=18%  Similarity=0.280  Sum_probs=206.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|...|++++|+|+|++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++..
T Consensus        60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~  139 (319)
T 3frx_A           60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ  139 (319)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC
T ss_pred             EEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999754


Q ss_pred             CeeEEEe-eCCCceEEEEecCC------ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           85 AQLFTFN-FDSPARSVDFAVGD------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                       .+..+. +...+.++.+.|..      ..+++++.     ++.+.+|++.      ..+....+.+|...|.+++|+|+
T Consensus       140 -~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~~wd~~------~~~~~~~~~~h~~~v~~~~~sp~  207 (319)
T 3frx_A          140 -CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-----DKMVKAWNLN------QFQIEADFIGHNSNINTLTASPD  207 (319)
T ss_dssp             -EEEEECCCSSCEEEEEECCC------CCEEEEEET-----TSCEEEEETT------TTEEEEEECCCCSCEEEEEECTT
T ss_pred             -eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC-----CCEEEEEECC------cchhheeecCCCCcEEEEEEcCC
Confidence             444444 78889999999854      35666554     5567777764      34566778899999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-------
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-------  230 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------  230 (305)
                      +++|++++.||.|++||+++++.+..+.    +...|.+++|+|++.+|++++.+ .+++|++..+..+..+.       
T Consensus       208 g~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~  282 (319)
T 3frx_A          208 GTLIASAGKDGEIMLWNLAAKKAMYTLS----AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYS  282 (319)
T ss_dssp             SSEEEEEETTCEEEEEETTTTEEEEEEE----CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccc
Confidence            9999999999999999999999888886    45789999999999999888754 59999999887776654       


Q ss_pred             --eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          231 --TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       231 --~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                        +...+.+++|+|+|++|++|+.|+.     +++|++
T Consensus       283 ~~~~~~v~~~~~spdg~~l~sg~~Dg~-----i~vWd~  315 (319)
T 3frx_A          283 KAAEPHAVSLAWSADGQTLFAGYTDNV-----IRVWQV  315 (319)
T ss_dssp             GGGCCCEEEEEECTTSSEEEEEETTSC-----EEEEEE
T ss_pred             cCcCcceeEEEECCCCCEEEEeecCce-----EEEEEE
Confidence              2456889999999999999999998     555554

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.5e-40  Score=264.08  Aligned_cols=250  Identities=23%  Similarity=0.374  Sum_probs=217.1

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|.++|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++++.||.|++||++++
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   97 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG   97 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      +.+..+. +...+.+++|+|++..+++++.     ++.+.+|++.      ..+....+..|...|.+++|+|+++++++
T Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~i~iwd~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
T 4ery_A           98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-----DESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVS  166 (312)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSCEEEEETT------TCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECC------CCEEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence            9988887 7888999999999999988765     5567777763      34667788899999999999999999999


Q ss_pred             eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCee--EEEe
Q 021925          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN--AVTM  240 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~--~~~~  240 (305)
                      ++.||.|++||+++++.+..+..  .+...+..++|+|++++|++++.||.|++||+++++++..+. +.....  ...+
T Consensus       167 ~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
T 4ery_A          167 SSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF  244 (312)
T ss_dssp             EETTSCEEEEETTTCCEEEEECC--SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred             EeCCCcEEEEECCCCceeeEEec--cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence            99999999999999988777642  466789999999999999999999999999999999988887 433322  2233


Q ss_pred             -cCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          241 -SPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       241 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                       .+++++|++|+.|+.     +++|++......
T Consensus       245 ~~~~~~~l~sg~~dg~-----i~vwd~~~~~~~  272 (312)
T 4ery_A          245 SVTGGKWIVSGSEDNL-----VYIWNLQTKEIV  272 (312)
T ss_dssp             ECSSSCEEEECCTTSC-----EEEEETTTCCEE
T ss_pred             EeCCCcEEEEECCCCE-----EEEEECCCchhh
Confidence             467888999999987     566665544433

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.2e-40  Score=266.30  Aligned_cols=244  Identities=20%  Similarity=0.321  Sum_probs=204.9

Q ss_pred             Eeccccc-ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE---EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925            5 LMKGHER-PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG---TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus         5 ~l~~h~~-~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~---~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      .+.+|.+ .|.+++|+|+|++||+|+.|++|+|||+++++...   ...+|...|.+++|+|++++|++++.|+++++||
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~   89 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK   89 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEE
Confidence            4789988 99999999999999999999999999998876432   2367999999999999999999999999999999


Q ss_pred             cCCCC--eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           81 VETGA--QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        81 ~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      +.++.  .+..+. +...|.+++|+|++.++++++.     ++.+.+|++...   .....+..+.+|...|.+++|+|+
T Consensus        90 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~-----D~~v~iwd~~~~---~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR-----DKSVWVWEVDEE---DEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             ECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEEECTT---SCEEEEEEECCCCSCEEEEEECSS
T ss_pred             ccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC-----CCeEEEEECCCC---CCeEEEEEecCcCCCeEEEEECCC
Confidence            98775  344454 7889999999999999998875     567788887532   122456678899999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc------------
Q 021925          158 NRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL------------  223 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------  223 (305)
                      +++|++++.|+.|++||.++++.  ...+.   +|...|++++|+|++++|++++.|++|++||....            
T Consensus       162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~---~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~  238 (345)
T 3fm0_A          162 QELLASASYDDTVKLYREEEDDWVCCATLE---GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD  238 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred             CCEEEEEeCCCcEEEEEecCCCEEEEEEec---CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccC
Confidence            99999999999999999987753  34454   79999999999999999999999999999996321            


Q ss_pred             ---eEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925          224 ---ELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       224 ---~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~  259 (305)
                         +++..+.  |...|.+++|+|++..|++++.|+...++
T Consensus       239 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw  279 (345)
T 3fm0_A          239 PSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVF  279 (345)
T ss_dssp             CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             CccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEE
Confidence               3334443  67789999999999999999999884333

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2e-41  Score=275.06  Aligned_cols=249  Identities=17%  Similarity=0.163  Sum_probs=197.4

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE----EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG----TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~----~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      ..+|...|++++|+|+++ +++++.||+|+|||+.+++...    ...+|.+.|.+++|+|++++|++++.||.|++||+
T Consensus        90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~  168 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL  168 (357)
T ss_dssp             EEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            457889999999999985 5567889999999998876543    34479999999999999999999999999999999


Q ss_pred             CCCCeeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-
Q 021925           82 ETGAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-  158 (305)
Q Consensus        82 ~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  158 (305)
                      ++++.+..+. +...+.+++|++++. .+++++.     ++.+.+|++....    .........+...+.+++|+|++ 
T Consensus       169 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~-----dg~v~~wd~~~~~----~~~~~~~~~~~~~v~~v~~sp~~~  239 (357)
T 4g56_B          169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE-----DGRILLWDTRKPK----PATRIDFCASDTIPTSVTWHPEKD  239 (357)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEET-----TSCEEECCTTSSS----CBCBCCCTTCCSCEEEEEECTTST
T ss_pred             CCCcEEEEEcCCCCCEEEEEEccCCCceeeeecc-----CCceEEEECCCCc----eeeeeeeccccccccchhhhhccc
Confidence            9999988887 788999999999875 4555443     3456666553221    11122234567789999999985 


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA  237 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~  237 (305)
                      .+|++|+.|+.|++||+++++.+..+.   +|...|++++|+|++ ++|++|+.||+|+|||+++++++..+.|...|++
T Consensus       240 ~~la~g~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~  316 (357)
T 4g56_B          240 DTFACGDETGNVSLVNIKNPDSAQTSA---VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTG  316 (357)
T ss_dssp             TEEEEEESSSCEEEEESSCGGGCEEEC---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEE
T ss_pred             ceEEEeecccceeEEECCCCcEeEEEe---ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEE
Confidence            688899999999999999999888887   789999999999987 5799999999999999999999988889999999


Q ss_pred             EEecC-CCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          238 VTMSP-LLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       238 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      ++|+| ++++|++|+.|+.     +++|++..+...
T Consensus       317 vafsP~d~~~l~s~s~Dg~-----v~iW~~~~~~~~  347 (357)
T 4g56_B          317 VAWSPLDHSKFTTVGWDHK-----VLHHHLPSEGRT  347 (357)
T ss_dssp             EEECSSSTTEEEEEETTSC-----EEEEECC-----
T ss_pred             EEEeCCCCCEEEEEcCCCe-----EEEEECCCCCcc
Confidence            99998 7889999999998     666665444333

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.3e-40  Score=270.81  Aligned_cols=237  Identities=19%  Similarity=0.332  Sum_probs=204.7

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      ..|++++|+|+|++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             eeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-------eccCCCeeEEEEcCCCCEEE
Q 021925           91 NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-------KGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        91 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~  162 (305)
                      .....+.+++++| ++.++++++.     ++.+.+|+...      +..+..+       .+|...|.+++|+|++++|+
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~s~-----d~~v~iwd~~~------~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~  272 (393)
T 1erj_A          204 SIEDGVTTVAVSPGDGKYIAAGSL-----DRAVRVWDSET------GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  272 (393)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEET-----TSCEEEEETTT------CCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             EcCCCcEEEEEECCCCCEEEEEcC-----CCcEEEEECCC------CcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence            8889999999999 7888887765     45667776532      2233333       57899999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcE------------eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          163 SAGEDAIVRIWDTETGKL------------LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      +|+.||.|++||+++...            ...+.   +|...|.+++|+|++.+|++|+.||.|++||+++++++..+.
T Consensus       273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~  349 (393)
T 1erj_A          273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI---GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  349 (393)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEE---CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe---cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence            999999999999986432            23333   788999999999999999999999999999999999998888


Q ss_pred             -eCCCeeEEEecC------CCCcEEEeeCCcEEEEEEeehhhh
Q 021925          231 -TERPVNAVTMSP------LLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       231 -~~~~v~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                       |...|.+++|+|      ++++|++|+.|+.     +++|+.
T Consensus       350 ~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~-----i~iW~~  387 (393)
T 1erj_A          350 GHRNSVISVAVANGSSLGPEYNVFATGSGDCK-----ARIWKY  387 (393)
T ss_dssp             CCSSCEEEEEECSSCTTCTTCEEEEEEETTSE-----EEEEEE
T ss_pred             CCCCCEEEEEecCCcCcCCCCCEEEEECCCCc-----EEECcc
Confidence             888999999876      6889999999998     555543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3e-41  Score=269.74  Aligned_cols=247  Identities=20%  Similarity=0.269  Sum_probs=196.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEEe
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLWN   80 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd   80 (305)
                      .+.+|.+.|++++|+|+|++||+|+.|++|++||+.+++  .+..+.+|.++|.+++|+|  ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            578999999999999999999999999999999998875  4678899999999999986  488999999999999999


Q ss_pred             cCCCC--eeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925           81 VETGA--QLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (305)
Q Consensus        81 ~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (305)
                      +++++  ....+. +...|.+++|+|+  +.++++++.     ++.+.+|++....   .......+.+|...+.+++|+
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~-----D~~i~lwd~~~~~---~~~~~~~~~~h~~~v~~~~~~  159 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS-----DGAISLLTYTGEG---QWEVKKINNAHTIGCNAVSWA  159 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS-----SSCEEEEEECSSS---CEEECCBTTSSSSCBCCCEEC
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC-----CCCEEEEecCCCC---CcceeeeeccccCCcceEEEc
Confidence            98874  444444 7889999999997  678888765     5667777765321   011123446788999999999


Q ss_pred             CC-----------------CCEEEEeeCCCcEEEEeCCCCc---EeeeeccccCCccceEEEEEcCCC----CEEEEEeC
Q 021925          156 PL-----------------NRTIISAGEDAIVRIWDTETGK---LLKESDKETGHKKTITSLAKAADG----SHFLTGSL  211 (305)
Q Consensus       156 ~~-----------------~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~  211 (305)
                      |+                 +++|++|+.|+.|++||++...   ++..+.   +|...|.+++|+|++    ++|++++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~---~h~~~V~~v~~sp~~~~~~~~las~s~  236 (316)
T 3bg1_A          160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE---AHSDWVRDVAWAPSIGLPTSTIASCSQ  236 (316)
T ss_dssp             CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB---CCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred             cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc---cCCCceEEEEecCCCCCCCceEEEEcC
Confidence            97                 4789999999999999997653   444444   899999999999986    78999999


Q ss_pred             CCeEEEEEcCCc---e-EEEEE-eeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          212 DKSAKLWDARTL---E-LIKTY-VTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       212 dg~i~iwd~~~~---~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      ||+|++||+++.   + ....+ .+...|.+++|+|++++|++|+.|+.     +++|+..
T Consensus       237 D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~-----v~lw~~~  292 (316)
T 3bg1_A          237 DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNK-----VTLWKES  292 (316)
T ss_dssp             TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSC-----EEEEEEC
T ss_pred             CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCe-----EEEEEEC
Confidence            999999998762   1 11222 37889999999999999999999997     5566543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-39  Score=262.44  Aligned_cols=234  Identities=22%  Similarity=0.349  Sum_probs=199.8

Q ss_pred             EecccccceEEEEE-----cC-CCCEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcCCCcEEEEEe
Q 021925            5 LMKGHERPLTYLKY-----NK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDSMTLITGS   71 (305)
Q Consensus         5 ~l~~h~~~v~~~~~-----~~-~~~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~   71 (305)
                      .|+||.+.|++++|     ++ ++++|++|+.|++|++||+.+.       .+...+.+|...|.+++|+|++.++++++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s   95 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS   95 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence            58899999999999     77 9999999999999999998753       45677889999999999999999999999


Q ss_pred             CCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE---eccCC
Q 021925           72 ADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGPQG  147 (305)
Q Consensus        72 ~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  147 (305)
                      .|++|++||+++++.+..+. +...|.+++|+|++..+++++.     ++.+.+|++..       ......   ..|..
T Consensus        96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~-----d~~i~~wd~~~-------~~~~~~~~~~~~~~  163 (343)
T 2xzm_R           96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-----EREIKLWNILG-------ECKFSSAEKENHSD  163 (343)
T ss_dssp             TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET-----TSCEEEEESSS-------CEEEECCTTTSCSS
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC-----CCEEEEEeccC-------CceeeeecccCCCc
Confidence            99999999999999888887 8889999999999999888765     56677777641       122222   26888


Q ss_pred             CeeEEEEcCCC----------CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925          148 RINRAVWGPLN----------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (305)
Q Consensus       148 ~i~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  217 (305)
                      .|.+++|+|++          .++++++.||.|++||. ..+....+.   +|...|++++|+|+|++|++|+.||.|++
T Consensus       164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~---~h~~~v~~~~~s~~g~~l~sgs~dg~v~i  239 (343)
T 2xzm_R          164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK---AHESNVNHLSISPNGKYIATGGKDKKLLI  239 (343)
T ss_dssp             CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE---CCSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc---CccccceEEEECCCCCEEEEEcCCCeEEE
Confidence            99999999987          78999999999999994 455566665   79999999999999999999999999999


Q ss_pred             EEcC-CceEEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925          218 WDAR-TLELIKTYVTERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       218 wd~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      ||+. ...+...+.+...|.+++|+|++++++++++++
T Consensus       240 wd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~  277 (343)
T 2xzm_R          240 WDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQG  277 (343)
T ss_dssp             EESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSC
T ss_pred             EECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCC
Confidence            9994 445556666777899999999999888776555

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.8e-40  Score=264.69  Aligned_cols=250  Identities=18%  Similarity=0.239  Sum_probs=202.3

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC--eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ..+|.+.|++++|+|+|++|++|+.|++|++|+..++  +.+..+.+|.+.|.+++|+|++++|++++.|++|++||+++
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence            4789999999999999999999999999999998876  45778899999999999999999999999999999999987


Q ss_pred             CCee---EEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925           84 GAQL---FTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (305)
Q Consensus        84 ~~~~---~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (305)
                      ++..   ..+. +...+.+++|+|++.++++++.     ++.+.+|+....    .......+.+|...|.+++|+|+++
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----d~~i~~w~~~~~----~~~~~~~~~~h~~~v~~l~~sp~g~  207 (345)
T 3fm0_A          137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASY-----DDTVKLYREEED----DWVCCATLEGHESTVWSLAFDPSGQ  207 (345)
T ss_dssp             TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET-----TSCEEEEEEETT----EEEEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC-----CCcEEEEEecCC----CEEEEEEecCCCCceEEEEECCCCC
Confidence            7543   3333 6788999999999999988875     456677776432    1134567889999999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCc---------------EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925          160 TIISAGEDAIVRIWDTETGK---------------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  224 (305)
                      +|++++.|+.|++||.....               ++..+.  ..|...|.+++|+|++..|++++.|+.|++|+.....
T Consensus       208 ~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          208 RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS--GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC--SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred             EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec--CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence            99999999999999974321               122222  1378899999999999999999999999999987542


Q ss_pred             ----E----EEEE--eeCCCeeEEEecCCCC-cEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925          225 ----L----IKTY--VTERPVNAVTMSPLLD-HVCIGEPQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       225 ----~----~~~~--~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
                          +    ....  .|...|++++|+|++. +|++|+.|+.     +++|+......
T Consensus       286 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~-----v~~W~~~~~~~  338 (345)
T 3fm0_A          286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE-----VAFWKYQRPEG  338 (345)
T ss_dssp             CTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC-----EEEEEECC---
T ss_pred             CcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc-----EEEEEecCCCC
Confidence                1    1111  2778899999999985 8899999987     66666544443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-39  Score=262.51  Aligned_cols=240  Identities=18%  Similarity=0.260  Sum_probs=197.3

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|...|++++|+|++.++++|+.|++|++||+++++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+...
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~  150 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE  150 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999743


Q ss_pred             CeeEEE---eeCCCceEEEEecCC----------ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925           85 AQLFTF---NFDSPARSVDFAVGD----------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (305)
Q Consensus        85 ~~~~~~---~~~~~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (305)
                      ......   .+...+.+++|+|++          .++++++.     ++.+.+|+.       ..+....+.+|...|.+
T Consensus       151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~-------~~~~~~~~~~h~~~v~~  218 (343)
T 2xzm_R          151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW-----DGRLKVWNT-------NFQIRYTFKAHESNVNH  218 (343)
T ss_dssp             EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET-----TSEEEEEET-------TTEEEEEEECCSSCEEE
T ss_pred             ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC-----CCEEEEEcC-------CCceeEEEcCccccceE
Confidence            322222   266789999999986          45666554     456677762       23556778899999999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE--E
Q 021925          152 AVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--T  228 (305)
Q Consensus       152 ~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~  228 (305)
                      ++|+|++++|++|+.||.|++||+.. ......+.    +...|.+++|+|++.+++++ .|+.|++||+.+++...  .
T Consensus       219 ~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~----~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~  293 (343)
T 2xzm_R          219 LSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD----AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCT  293 (343)
T ss_dssp             EEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE----CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcccceeec----CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEE
Confidence            99999999999999999999999954 33333332    45679999999999877655 58889999998776543  3


Q ss_pred             Ee------------eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          229 YV------------TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       229 ~~------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                      +.            +...|.+++|+|+|++|++|+.|+.     +++|+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~-----v~~w~~  338 (343)
T 2xzm_R          294 IEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV-----IRTFSF  338 (343)
T ss_dssp             CCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE-----EEEEEE
T ss_pred             eecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCce-----EEEEEE
Confidence            22            4567999999999999999999997     555543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.7e-39  Score=258.32  Aligned_cols=247  Identities=22%  Similarity=0.299  Sum_probs=200.8

Q ss_pred             EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCe-----eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v   78 (305)
                      +|+||.+.|++++|+|+ +++|+||+.||+|+|||+.+.+     +...+.+|...|.+++|+|++++|++++.|+.|++
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~  112 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL  112 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence            48899999999999997 6899999999999999987643     56778899999999999999999999999999999


Q ss_pred             EecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcc-eeee-------------------------------------
Q 021925           79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPF-MELN-------------------------------------  119 (305)
Q Consensus        79 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~-~~~~-------------------------------------  119 (305)
                      |+........... ....+....+.+++..+++++.+. ..+.                                     
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~  192 (340)
T 4aow_A          113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG  192 (340)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence            9998877666655 556667777777777776654311 1110                                     


Q ss_pred             --eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEE
Q 021925          120 --SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL  197 (305)
Q Consensus       120 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  197 (305)
                        ..+.+|+      ....+....+.+|.+.|++++|+|++++|++|+.||.|++||+++.+++..+.    +...+.++
T Consensus       193 ~d~~i~i~d------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~  262 (340)
T 4aow_A          193 WDKLVKVWN------LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD----GGDIINAL  262 (340)
T ss_dssp             TTSCEEEEE------TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE----CSSCEEEE
T ss_pred             CCCEEEEEE------CCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec----CCceEEee
Confidence              1111111      12345667788899999999999999999999999999999999999988886    56789999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe----------eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----------TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      +|+|++. +++++.|+.|++||++++..+..+.          +...|++++|+|++++|++|+.|+.     +++|++.
T Consensus       263 ~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~-----v~iW~~~  336 (340)
T 4aow_A          263 CFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL-----VRVWQVT  336 (340)
T ss_dssp             EECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC-----EEEEEEE
T ss_pred             ecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE-----EEEEeCC
Confidence            9999875 5566679999999999887776553          5678999999999999999999997     6666554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-39  Score=258.45  Aligned_cols=241  Identities=15%  Similarity=0.200  Sum_probs=197.1

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC--eeeEEe-cC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTY-RG-HNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~--~~~~~~-~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      .+.+|.++|.+++|+|+  +||+|+.|++|++||+.++  +....+ .+ |.+.|.+++|+|++++|++++.|++|++||
T Consensus         9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~   86 (330)
T 2hes_X            9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA   86 (330)
T ss_dssp             EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            57899999999999987  9999999999999999875  455556 44 999999999999999999999999999999


Q ss_pred             cCCC-------CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925           81 VETG-------AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (305)
Q Consensus        81 ~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (305)
                      ++..       +.+..+. +...|.+++|+|++.++++++.     ++.+.+|++....  ...+.+..+.+|...|.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~-----D~~v~iwd~~~~~--~~~~~~~~~~~h~~~v~~v  159 (330)
T 2hes_X           87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-----DKSVWIWETDESG--EEYECISVLQEHSQDVKHV  159 (330)
T ss_dssp             C-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET-----TSCEEEEECCTTC--CCCEEEEEECCCSSCEEEE
T ss_pred             cccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC-----CCEEEEEeccCCC--CCeEEEEEeccCCCceEEE
Confidence            8532       3344444 7889999999999999998875     5677788774221  2235667788999999999


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCC--cEeeeeccccCCccceEEEEEcCC--CCEEEEEeCCCeEEEEEcCCc-----
Q 021925          153 VWGPLNRTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTL-----  223 (305)
Q Consensus       153 ~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~-----  223 (305)
                      +|+|++++|++++.|+.|++||..++  +++..+.   +|...|.+++|+|+  +..|++++.|++|++||++++     
T Consensus       160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~  236 (330)
T 2hes_X          160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN---GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ  236 (330)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc---CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence            99999999999999999999999876  4566665   89999999999998  678999999999999999765     


Q ss_pred             ---eEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEE
Q 021925          224 ---ELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFM  258 (305)
Q Consensus       224 ---~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~  258 (305)
                         .+...+.  |...|.+++|++++ .|++++.|+...+
T Consensus       237 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~i  275 (330)
T 2hes_X          237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAV  275 (330)
T ss_dssp             EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEE
T ss_pred             ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEE
Confidence               3444443  67889999999765 8889998887433

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.3e-39  Score=280.73  Aligned_cols=246  Identities=15%  Similarity=0.172  Sum_probs=205.6

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeCC----CcEE
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAK   77 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----g~v~   77 (305)
                      ..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++  ....+.+|.++|.+++|+|++++|++++.+    +.|+
T Consensus        53 ~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~  132 (611)
T 1nr0_A           53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF  132 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred             eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEE
Confidence            4678999999999999999999999999999999987543  456788999999999999999999998875    4688


Q ss_pred             EEecCCCCeeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925           78 LWNVETGAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (305)
Q Consensus        78 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (305)
                      +||.  ++....+. +...|.+++|+|++. .+++++.     ++.+.+|+..      ..+....+.+|...|.+++|+
T Consensus       133 ~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~-----D~~v~lwd~~------~~~~~~~l~~H~~~V~~v~fs  199 (611)
T 1nr0_A          133 LFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSD-----DNTVAIFEGP------PFKFKSTFGEHTKFVHSVRYN  199 (611)
T ss_dssp             ETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEET-----TSCEEEEETT------TBEEEEEECCCSSCEEEEEEC
T ss_pred             EeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeC-----CCeEEEEECC------CCeEeeeeccccCceEEEEEC
Confidence            8874  44444444 788999999999986 3666654     5566777642      345677889999999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCcEeeeecc----ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE--
Q 021925          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY--  229 (305)
Q Consensus       156 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--  229 (305)
                      |++++|++++.|+.|++||+.+++.+..+..    ..+|...|.+++|+|++++|++++.|++|++||+++++++..+  
T Consensus       200 pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~  279 (611)
T 1nr0_A          200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV  279 (611)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence            9999999999999999999999988777632    1168999999999999999999999999999999987765433  


Q ss_pred             -----------------------------------------e-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          230 -----------------------------------------V-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       230 -----------------------------------------~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                                                               . |...|.+++|+|++++|++++.|+.     +++|+..
T Consensus       280 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~-----v~~Wd~~  354 (611)
T 1nr0_A          280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH-----INSWDIS  354 (611)
T ss_dssp             CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-----EEEEETT
T ss_pred             CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc-----EEEEECC
Confidence                                                     1 5678999999999999999999997     5566554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-39  Score=258.43  Aligned_cols=242  Identities=17%  Similarity=0.253  Sum_probs=191.5

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-------CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      +|.+.|++++|+|++++|++|+.|++|++||.+.       .+.+..+.+|.+.|.+++|+|++++|++|+.|++|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            3999999999999999999999999999999853       356778899999999999999999999999999999999


Q ss_pred             cCCC----CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925           81 VETG----AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (305)
Q Consensus        81 ~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (305)
                      ++..    +.+..+. +...+.+++|+|++..+++++.     ++.+++|+....    ..+.+..+.+|.+.|.+++|+
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-----D~~i~iW~~~~~----~~~~~~~~~~h~~~v~~~~~~  206 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY-----DDTVRIWKDYDD----DWECVAVLNGHEGTVWSSDFD  206 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET-----TSCEEEEEEETT----EEEEEEEECCCSSCEEEEEEC
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC-----CCeEEEEECCCC----CeeEEEEccCCCCcEEEEEec
Confidence            9532    3344444 7788999999999999988875     566777776431    124677889999999999999


Q ss_pred             CC--CCEEEEeeCCCcEEEEeCCCC--------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-
Q 021925          156 PL--NRTIISAGEDAIVRIWDTETG--------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-  224 (305)
Q Consensus       156 ~~--~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-  224 (305)
                      |+  +.+|++++.|+.|++||++.+        .....+.  ..|...|.+++|++++ +|++++.||.|++||..+++ 
T Consensus       207 ~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~  283 (330)
T 2hes_X          207 KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP--DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW  283 (330)
T ss_dssp             CSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC--SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc--cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce
Confidence            98  678999999999999998754        2233332  1388899999999765 89999999999999998774 


Q ss_pred             -EEEEE-e-eCC-CeeEEEecC--CCCcEEEeeCCcEEEEEEeehhhh
Q 021925          225 -LIKTY-V-TER-PVNAVTMSP--LLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       225 -~~~~~-~-~~~-~v~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                       ..... . |.. .|.+++|+|  ++++|++|+.|+.     +++|++
T Consensus       284 ~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~-----v~~W~~  326 (330)
T 2hes_X          284 KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI-----VNFWSL  326 (330)
T ss_dssp             EEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE-----EEEEEC
T ss_pred             EEEeccccccccceEEEEEEecCCCceEEEEecCCCc-----EEEEEe
Confidence             33333 2 555 899999999  7899999999997     566654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-38  Score=253.83  Aligned_cols=237  Identities=24%  Similarity=0.470  Sum_probs=205.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||++++
T Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  139 (312)
T 4ery_A           60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG  139 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCCeeEEEEcCCCCEEE
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~  162 (305)
                      +.+..+. +..++.+++|+|++..+++++.     ++.+.+|++..      .+....+ ..+...+..++|+|++++|+
T Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~  208 (312)
T 4ery_A          140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-----DGLCRIWDTAS------GQCLKTLIDDDNPPVSFVKFSPNGKYIL  208 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTT------CCEEEEECCSSCCCEEEEEECTTSSEEE
T ss_pred             EEEEEecCCCCcEEEEEEcCCCCEEEEEeC-----CCcEEEEECCC------CceeeEEeccCCCceEEEEECCCCCEEE
Confidence            9888877 6788999999999998888765     45677777642      2333333 45667899999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccc---eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKT---ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  238 (305)
                      +++.||.|++||+++++.+..+.   +|...   +......+++.+|++|+.||.|++||+++++.+..+. |...|.++
T Consensus       209 ~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~  285 (312)
T 4ery_A          209 AATLDNTLKLWDYSKGKCLKTYT---GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST  285 (312)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEC---SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EEcCCCeEEEEECCCCcEEEEEE---ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEE
Confidence            99999999999999999888876   44432   3333344678899999999999999999999999887 88899999


Q ss_pred             EecCCCCcEEEee--CCcE
Q 021925          239 TMSPLLDHVCIGE--PQTI  255 (305)
Q Consensus       239 ~~~~~~~~l~~~~--~~~~  255 (305)
                      +|+|+++.+++++  .|+.
T Consensus       286 ~~~p~~~~l~s~~~~~d~~  304 (312)
T 4ery_A          286 ACHPTENIIASAALENDKT  304 (312)
T ss_dssp             EECSSSSEEEEEECTTTCC
T ss_pred             eecCcCCceEEEEccCCcc
Confidence            9999999999986  4554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-38  Score=274.92  Aligned_cols=233  Identities=27%  Similarity=0.471  Sum_probs=208.7

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ..+.+|...|.+++|+|+|++|++++.||.|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +
T Consensus       338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~  415 (577)
T 2ymu_A          338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N  415 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-C
Confidence            357889999999999999999999999999999995 67888899999999999999999999999999999999995 4


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      ++.+..+. +...+.+++|+|++..+++++.     ++.+.+|+.       ..+....+.+|...|.+++|+|++++|+
T Consensus       416 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-----d~~v~~w~~-------~~~~~~~~~~~~~~v~~~~~spd~~~la  483 (577)
T 2ymu_A          416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASD-----DKTVKLWNR-------NGQLLQTLTGHSSSVRGVAFSPDGQTIA  483 (577)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSEEEEEET-------TSCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred             CCEEEEecCCCCCeEEEEECCCCCEEEEEcC-----CCEEEEEEC-------CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            66666665 7889999999999999988765     445666653       2467788899999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEec
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS  241 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~  241 (305)
                      +++.|+.|++||. +++.++.+.   +|...|++++|+|++++|++++.||.|++||. +++++..+. |..+|++++|+
T Consensus       484 s~~~d~~i~iw~~-~~~~~~~~~---~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs  558 (577)
T 2ymu_A          484 SASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS  558 (577)
T ss_dssp             EEETTSEEEEEET-TSCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEEC
T ss_pred             EEeCCCEEEEEcC-CCCEEEEEe---CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEc
Confidence            9999999999995 577787776   79999999999999999999999999999995 678888887 88999999999


Q ss_pred             CCCCcEEEeeCCcE
Q 021925          242 PLLDHVCIGEPQTI  255 (305)
Q Consensus       242 ~~~~~l~~~~~~~~  255 (305)
                      ||+++|++++.|+.
T Consensus       559 ~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          559 PDGQTIASASSDKT  572 (577)
T ss_dssp             TTSSCEEEEETTSC
T ss_pred             CCCCEEEEEeCCCE
Confidence            99999999999987

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.2e-39  Score=261.19  Aligned_cols=245  Identities=17%  Similarity=0.198  Sum_probs=198.2

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-----------CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-----------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ   74 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-----------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg   74 (305)
                      ...|...|.+++|+|||++|++++ |+++++||...           .........|...|.+++|+|++ .|++|+.||
T Consensus        26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg  103 (344)
T 4gqb_B           26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG  103 (344)
T ss_dssp             CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred             cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence            346788899999999999999887 77888887321           01111222356789999999986 688999999


Q ss_pred             cEEEEecCCCCeeEEEe-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe
Q 021925           75 TAKLWNVETGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI  149 (305)
Q Consensus        75 ~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (305)
                      +|+|||+++++.+....     |...|.+++|+|+++.+++++.     ++.+.+|++.      .++.+..+.+|...|
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~-----d~~i~iwd~~------~~~~~~~~~~h~~~V  172 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK-----DICIKVWDLA------QQVVLSSYRAHAAQV  172 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSCE
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC-----CCeEEEEECC------CCcEEEEEcCcCCce
Confidence            99999999988655443     6789999999999999998875     5667788764      457788899999999


Q ss_pred             eEEEEcCCCC-EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceEEE
Q 021925          150 NRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIK  227 (305)
Q Consensus       150 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~  227 (305)
                      .+++|+|++. +|++++.|+.|++||+++++....+... .+...+++++|+|+ +++|++|+.||.|++||+++++++.
T Consensus       173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~  251 (344)
T 4gqb_B          173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL  251 (344)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE
T ss_pred             EEEEecCCCCCceeeeccccccccccccccceeeeeecc-eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE
Confidence            9999999984 7899999999999999999888776422 45667999999994 5688999999999999999999999


Q ss_pred             EEe-eCCCeeEEEecCCC-CcEEEeeCCcEEEEEEeehhhhhhh
Q 021925          228 TYV-TERPVNAVTMSPLL-DHVCIGEPQTIKFMLLVYLFVLFLD  269 (305)
Q Consensus       228 ~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~  269 (305)
                      ++. |...|++++|+|++ ++|++|+.|+.     +++|+....
T Consensus       252 ~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-----i~vwd~~~~  290 (344)
T 4gqb_B          252 SSAVHSQCVTGLVFSPHSVPFLASLSEDCS-----LAVLDSSLS  290 (344)
T ss_dssp             EEECCSSCEEEEEECSSSSCCEEEEETTSC-----EEEECTTCC
T ss_pred             EEcCCCCCEEEEEEccCCCeEEEEEeCCCe-----EEEEECCCC
Confidence            988 88999999999998 57889999987     666765543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3e-38  Score=259.83  Aligned_cols=247  Identities=22%  Similarity=0.377  Sum_probs=204.0

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc------------------ceEEEEEcCCCcEEEE
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG------------------AVWCCDVSRDSMTLIT   69 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~------------------~v~~i~~~~~~~~l~s   69 (305)
                      +|.+.|++++|+|+|++||+|+ ++.+++|++.+++.+..+..|..                  .|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999976 78999999999998888765532                  4999999999999999


Q ss_pred             EeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC
Q 021925           70 GSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR  148 (305)
Q Consensus        70 ~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (305)
                      |+.|+.|++||+++++.+..+. +...|.+++|+|++..+++++.     ++.+.+|++..      ++....+ .+...
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----d~~v~iwd~~~------~~~~~~~-~~~~~  208 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----DRTVRIWDLRT------GQCSLTL-SIEDG  208 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTT------TEEEEEE-ECSSC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC-----CCcEEEEECCC------CeeEEEE-EcCCC
Confidence            9999999999999998888777 8889999999999999888765     56677777642      2333333 35678


Q ss_pred             eeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcEeeeecc----ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 021925          149 INRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (305)
Q Consensus       149 i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  223 (305)
                      +.+++++| ++++|++|+.||.|++||+++++.+..+..    ..+|...|.+++|+|++++|++|+.||.|++||+++.
T Consensus       209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            99999999 899999999999999999999988776632    1368899999999999999999999999999999764


Q ss_pred             e------------EEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          224 E------------LIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       224 ~------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      .            +...+. |...|.+++|+|++++|++|+.|+.     +++|+.......
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-----v~iwd~~~~~~~  345 (393)
T 1erj_A          289 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-----VLFWDKKSGNPL  345 (393)
T ss_dssp             ------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-----EEEEETTTCCEE
T ss_pred             CCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-----EEEEECCCCeEE
Confidence            2            334444 7788999999999999999999997     666665544433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.9e-38  Score=253.56  Aligned_cols=253  Identities=18%  Similarity=0.200  Sum_probs=208.5

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEE
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAK   77 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~   77 (305)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++||+.++    +....+.+|...|.+++|+|  ++++|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            356899999999999999999999999999999999876    46677889999999999999  689999999999999


Q ss_pred             EEecCCCC---------eeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE---
Q 021925           78 LWNVETGA---------QLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---  142 (305)
Q Consensus        78 vwd~~~~~---------~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  142 (305)
                      +||+++++         .+..+. +...+.+++|+|+  +..+++++.     ++.+.+|++...............   
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~  159 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN-----DGILRLYDALEPSDLRSWTLTSEMKVL  159 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----TCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC-----CCcEEEecCCChHHhcccccccccccc
Confidence            99998873         344444 7889999999999  888888765     566778877654332222211111   


Q ss_pred             ----eccCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCC----CEEEEE
Q 021925          143 ----KGPQGRINRAVWGPL---NRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADG----SHFLTG  209 (305)
Q Consensus       143 ----~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~  209 (305)
                          ..|...+.+++|+|+   ++++++++.|+.+.+|+...++.  +..+.   +|...|++++|+|++    ++|+++
T Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP---GHKSLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC---CCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred             ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC---CCCcceeEEEECCCCCCcceEEEEE
Confidence                257788999999997   89999999999998888877664  44444   799999999999998    899999


Q ss_pred             eCCCeEEEEEcCCc----------------------------------------------eEEEEEe-eCCCeeEEEecC
Q 021925          210 SLDKSAKLWDARTL----------------------------------------------ELIKTYV-TERPVNAVTMSP  242 (305)
Q Consensus       210 ~~dg~i~iwd~~~~----------------------------------------------~~~~~~~-~~~~v~~~~~~~  242 (305)
                      +.||.|++||++++                                              +++..+. |...|++++|+|
T Consensus       237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  316 (351)
T 3f3f_A          237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL  316 (351)
T ss_dssp             ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred             cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence            99999999999874                                              4555555 778999999999


Q ss_pred             CCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925          243 LLDHVCIGEPQTIKFMLLVYLFVLFLD  269 (305)
Q Consensus       243 ~~~~l~~~~~~~~~~~~~~~~~~~~~~  269 (305)
                      ++++|++|+.|+.     +++|++...
T Consensus       317 ~~~~l~s~~~dg~-----v~iw~~~~~  338 (351)
T 3f3f_A          317 TGTILSSAGDDGK-----VRLWKATYS  338 (351)
T ss_dssp             SSCCEEEEETTSC-----EEEEEECTT
T ss_pred             CCCEEEEecCCCc-----EEEEecCcC
Confidence            9999999999997     666665543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-38  Score=257.91  Aligned_cols=246  Identities=19%  Similarity=0.328  Sum_probs=207.2

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcC--CCeeeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEEE
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW   79 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~vw   79 (305)
                      .++.+|.++|++++|+|++++|++|+.||.|++||+.  +++.+..+.+|.+.|.+++|+++  +++|++++.||.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            3578999999999999999999999999999999998  56777889999999999999976  8999999999999999


Q ss_pred             ecCCCC--eeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925           80 NVETGA--QLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (305)
Q Consensus        80 d~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (305)
                      |+++++  .+..+. +...+.+++|+|+  +..+++++.     ++.+.+|++...    .......+..|...|.+++|
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----d~~i~v~d~~~~----~~~~~~~~~~~~~~v~~~~~  155 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-----DGKVSVVEFKEN----GTTSPIIIDAHAIGVNSASW  155 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----TSEEEEEECCTT----SCCCEEEEECCTTCEEEEEE
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC-----CCcEEEEecCCC----CceeeEEecCCCCceEEEEE
Confidence            999886  444444 7789999999999  888888765     566777777543    12345567889999999999


Q ss_pred             cC-------------CCCEEEEeeCCCcEEEEeCCCCcE----eeeeccccCCccceEEEEEcCC---CCEEEEEeCCCe
Q 021925          155 GP-------------LNRTIISAGEDAIVRIWDTETGKL----LKESDKETGHKKTITSLAKAAD---GSHFLTGSLDKS  214 (305)
Q Consensus       155 ~~-------------~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~  214 (305)
                      +|             +++++++++.||.|++||+++++.    ...+.   +|...|.+++|+|+   +++|++++.||.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~~~~l~s~~~dg~  232 (379)
T 3jrp_A          156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDVAWSPTVLLRSYLASVSQDRT  232 (379)
T ss_dssp             CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe---cccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence            99             689999999999999999987653    23343   78999999999999   899999999999


Q ss_pred             EEEEEcCCce---EEEEEe---eCCCeeEEEecCCCCcEEEeeCCcEEEEEEe
Q 021925          215 AKLWDARTLE---LIKTYV---TERPVNAVTMSPLLDHVCIGEPQTIKFMLLV  261 (305)
Q Consensus       215 i~iwd~~~~~---~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~  261 (305)
                      |++||+++++   ......   +...|.+++|+|++++|++++.++...++.+
T Consensus       233 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          233 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            9999999863   122221   6778999999999999999999987544443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-40  Score=269.84  Aligned_cols=242  Identities=14%  Similarity=0.154  Sum_probs=197.4

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC--eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      |...+.|.++|++++|+|++++|++|+.||.|++||+.++  +.+..+.+|.+.|.+++|+|++++|++++.||.|++||
T Consensus         4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred             ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            4456678889999999999999999999999999999988  78888999999999999999999999999999999999


Q ss_pred             cCCCC---eeEEE-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec-cCCCeeEEEEc
Q 021925           81 VETGA---QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWG  155 (305)
Q Consensus        81 ~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~  155 (305)
                      +++++   ....+ .+...+.+++|+|++..+++++.     ++.+.+|++....   .......+.. |...|.+++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~---~~~~~~~~~~~h~~~v~~~~~~  155 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG-----ARVISVCYFEQEN---DWWVSKHLKRPLRSTILSLDWH  155 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEES-----SSCEEECCC--------CCCCEEECSSCCSCEEEEEEC
T ss_pred             cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec-----CCeEEEEEECCcc---cceeeeEeecccCCCeEEEEEc
Confidence            99877   33333 38889999999999998888765     4455566554321   1123556666 99999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCC------------------CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925          156 PLNRTIISAGEDAIVRIWDTET------------------GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (305)
Q Consensus       156 ~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  217 (305)
                      |++++|++++.||.|++||++.                  ++++..+    +|...|++++|+|++++|++++.||.|++
T Consensus       156 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~i  231 (377)
T 3dwl_C          156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTI  231 (377)
T ss_dssp             TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred             CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence            9999999999999999999963                  2233333    68899999999999999999999999999


Q ss_pred             EEcCCceE----EEEEe-eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          218 WDARTLEL----IKTYV-TERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       218 wd~~~~~~----~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      ||+++++.    +..+. +..+|.+++|+|++++|++|+.++..
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~  275 (377)
T 3dwl_C          232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI  275 (377)
T ss_dssp             CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE
T ss_pred             EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE
Confidence            99999877    66666 77889999999999999998877765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.6e-39  Score=278.88  Aligned_cols=243  Identities=16%  Similarity=0.200  Sum_probs=206.3

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      ..+++.+.+++|+|+|++||+++ ++.|++|++.+++....+.+|.+.|.+++|+|+|++|++|+.||+|+|||+.+++.
T Consensus        15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~   93 (611)
T 1nr0_A           15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH   93 (611)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred             CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence            34677899999999999999988 56999999999999999999999999999999999999999999999999976543


Q ss_pred             --eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC-EEE
Q 021925           87 --LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TII  162 (305)
Q Consensus        87 --~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  162 (305)
                        ...+. +...|.+++|+|+++.+++++..... ...+.+|+.        +.....+.+|...|.+++|+|++. .|+
T Consensus        94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~-~~~v~~wd~--------~~~~~~l~gh~~~v~~v~f~p~~~~~l~  164 (611)
T 1nr0_A           94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER-FGHVFLFDT--------GTSNGNLTGQARAMNSVDFKPSRPFRII  164 (611)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC-SEEEEETTT--------CCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             eeeEeecccCCceEEEEECCCCCEEEEEECCCCc-eeEEEEeeC--------CCCcceecCCCCCceEEEECCCCCeEEE
Confidence              33344 78899999999999998877642110 112333321        233445789999999999999987 699


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE--------eeCCC
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY--------VTERP  234 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~  234 (305)
                      +|+.|+.|++||..+++....+.   +|...|++++|+|+|++|++++.|++|++||+.+++++..+        .|...
T Consensus       165 s~s~D~~v~lwd~~~~~~~~~l~---~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~  241 (611)
T 1nr0_A          165 SGSDDNTVAIFEGPPFKFKSTFG---EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS  241 (611)
T ss_dssp             EEETTSCEEEEETTTBEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred             EEeCCCeEEEEECCCCeEeeeec---cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence            99999999999999888888776   89999999999999999999999999999999999988877        37789


Q ss_pred             eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          235 VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       235 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      |.+++|+|++++|++|+.|+.     +++|+..
T Consensus       242 V~~v~~spdg~~l~s~s~D~~-----v~lWd~~  269 (611)
T 1nr0_A          242 VFGLTWSPDGTKIASASADKT-----IKIWNVA  269 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSE-----EEEEETT
T ss_pred             EEEEEECCCCCEEEEEeCCCe-----EEEEeCC
Confidence            999999999999999999997     5666554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.4e-38  Score=256.02  Aligned_cols=241  Identities=21%  Similarity=0.239  Sum_probs=207.9

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      |..+..|.++|++++|+|++++|++++.|+.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus         1 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             -CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CceecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence            34567799999999999999999999999999999999987  8889999999999999999999999999999999999


Q ss_pred             cCCCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCc-eEEEEeccCCCeeEEEEcC
Q 021925           81 VETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE-SVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        81 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~  156 (305)
                      +++++......   +...+.+++|+|++..+++++.     ++.+.+|++.....   .. .......|...|.+++|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~  152 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-----SRVISICYFEQEND---WWVCKHIKKPIRSTVLSLDWHP  152 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-----TSSEEEEEEETTTT---EEEEEEECTTCCSCEEEEEECT
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC-----CCEEEEEEecCCCc---ceeeeeeecccCCCeeEEEEcC
Confidence            98887555543   7788999999999999988875     45667777754321   11 2233357889999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCC------------------CCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925          157 LNRTIISAGEDAIVRIWDTE------------------TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW  218 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  218 (305)
                      ++++|++++.||.|++||++                  .++.+..+.   .|...|.+++|+|++++|++++.||.|++|
T Consensus       153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  229 (372)
T 1k8k_C          153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS---SSCGWVHGVCFSANGSRVAWVSHDSTVCLA  229 (372)
T ss_dssp             TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC---CCSSCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC---CCCCeEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            99999999999999999954                  567777776   788999999999999999999999999999


Q ss_pred             EcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          219 DARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       219 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      |+++++++..+. +..+|.+++|+|+++++++| .++.
T Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~  266 (372)
T 1k8k_C          230 DADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF  266 (372)
T ss_dssp             EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS
T ss_pred             ECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe
Confidence            999999999888 77799999999999988888 5655

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.4e-39  Score=262.82  Aligned_cols=247  Identities=15%  Similarity=0.174  Sum_probs=196.4

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeC------CCceEEEEcCCCeee----EEecCCCcceEEEEEcCCCcEEEEEeCCCc
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAK------DHTPTVWFADNGERL----GTYRGHNGAVWCCDVSRDSMTLITGSADQT   75 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~------dg~v~iw~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~   75 (305)
                      ...|++.|++++|+|||++||+|+.      |+.|++|+..++...    ....+|...|.+++|+|++. +++++.||+
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~  116 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA  116 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence            4579999999999999999999997      678999988776543    33446889999999999985 556788999


Q ss_pred             EEEEecCCCCeeEE-----EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCee
Q 021925           76 AKLWNVETGAQLFT-----FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (305)
Q Consensus        76 v~vwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (305)
                      |++||+.+++....     ..+...|.+++|+|+++.+++++.     ++.+.+|++.      ..+.+..+.+|...|+
T Consensus       117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~-----dg~v~iwd~~------~~~~~~~~~~h~~~v~  185 (357)
T 4g56_B          117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK-----DFSVKVWDLS------QKAVLKSYNAHSSEVN  185 (357)
T ss_dssp             EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSCEE
T ss_pred             EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-----CCeEEEEECC------CCcEEEEEcCCCCCEE
Confidence            99999988765432     236789999999999999988765     5567777753      4567888899999999


Q ss_pred             EEEEcCCCC-EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceEEEE
Q 021925          151 RAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKT  228 (305)
Q Consensus       151 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~  228 (305)
                      +++|+|+++ ++++++.||.|++||++++++...+.. ..+...+++++|+|+ +.+|++|+.|+.|++||+++++++..
T Consensus       186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~  264 (357)
T 4g56_B          186 CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT  264 (357)
T ss_dssp             EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred             EEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence            999999885 789999999999999999887766542 246778999999997 46789999999999999999999988


Q ss_pred             Ee-eCCCeeEEEecCCC-CcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925          229 YV-TERPVNAVTMSPLL-DHVCIGEPQTIKFMLLVYLFVLFLDI  270 (305)
Q Consensus       229 ~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~  270 (305)
                      +. +..+|++++|+|++ ++|++|+.|+.     +++|+.....
T Consensus       265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~-----i~iwd~~~~~  303 (357)
T 4g56_B          265 SAVHSQNITGLAYSYHSSPFLASISEDCT-----VAVLDADFSE  303 (357)
T ss_dssp             ECCCSSCEEEEEECSSSSCCEEEEETTSC-----EEEECTTSCE
T ss_pred             EeccceeEEEEEEcCCCCCEEEEEeCCCE-----EEEEECCCCc
Confidence            87 88899999999997 57888998887     6667665443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.6e-38  Score=278.24  Aligned_cols=244  Identities=22%  Similarity=0.345  Sum_probs=210.9

Q ss_pred             EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCC-----eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG-----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v   78 (305)
                      .+++|.+.|++++|+|+ +++|++|+.||+|++|++.+.     .....+.+|...|.+++|+|++++|++|+.||+|++
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            47899999999999986 479999999999999998753     455678899999999999999999999999999999


Q ss_pred             EecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE----eccCCCeeEEE
Q 021925           79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL----KGPQGRINRAV  153 (305)
Q Consensus        79 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~  153 (305)
                      ||+.+++....+. |...|.+++|+|++..+++++.     ++.+.+|+...       .....+    .+|...|.+++
T Consensus       457 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----D~~i~iwd~~~-------~~~~~~~~~~~~h~~~v~~~~  524 (694)
T 3dm0_A          457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR-----DRTIKLWNTLG-------ECKYTISEGGEGHRDWVSCVR  524 (694)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSCEEEECTTS-------CEEEEECSSTTSCSSCEEEEE
T ss_pred             EECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC-----CCEEEEEECCC-------CcceeeccCCCCCCCcEEEEE
Confidence            9999998888776 8889999999999999888765     45666665421       111122    46888999999


Q ss_pred             EcCCC--CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925          154 WGPLN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (305)
Q Consensus       154 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  231 (305)
                      |+|++  ..+++++.|+.|++||+++++....+.   +|...|++++|+|++++|++|+.||.|++||+++++++..+.+
T Consensus       525 ~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~---~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~  601 (694)
T 3dm0_A          525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA---GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA  601 (694)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC
T ss_pred             EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc---CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC
Confidence            99987  689999999999999999999888887   7999999999999999999999999999999999999988888


Q ss_pred             CCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925          232 ERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLD  269 (305)
Q Consensus       232 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  269 (305)
                      ...+.+++|+|++.++++++.++      +++|++...
T Consensus       602 ~~~v~~~~~sp~~~~l~~~~~~~------i~iwd~~~~  633 (694)
T 3dm0_A          602 NSVIHALCFSPNRYWLCAATEHG------IKIWDLESK  633 (694)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTE------EEEEETTTT
T ss_pred             CCcEEEEEEcCCCcEEEEEcCCC------EEEEECCCC
Confidence            88999999999998888877665      555655443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.1e-38  Score=265.99  Aligned_cols=212  Identities=13%  Similarity=0.174  Sum_probs=176.0

Q ss_pred             ecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeee--EEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEec
Q 021925            6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         6 l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~   81 (305)
                      ..+|...|++++|+| ++++||+|+.||.|+|||+.+++..  ..+.+|.+.|++++|+| ++++|++++.||+|++||+
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~  194 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF  194 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence            467899999999999 5679999999999999999876543  44568999999999998 7889999999999999999


Q ss_pred             CCCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           82 ETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        82 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      +++.......   ....+.+++|+|++.++++++.     ++.+.+|++.       ++.+..+.+|...|.+++|+|++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-----dg~i~~wd~~-------~~~~~~~~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN-----VGNVILLNMD-------GKELWNLRMHKKKVTHVALNPCC  262 (435)
T ss_dssp             TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS-----SSBEEEEESS-------SCBCCCSBCCSSCEEEEEECTTC
T ss_pred             cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC-----CCcEeeeccC-------cceeEEEecccceEEeeeecCCC
Confidence            8664433333   3345789999999999998876     5567777753       23455678899999999999998


Q ss_pred             C-EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE
Q 021925          159 R-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (305)
Q Consensus       159 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  229 (305)
                      + ++++|+.|+.|++||+++.+....+....+|...|++++|+|+|++|++++.||.|++||+++++....+
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred             ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence            6 7889999999999999987766665544579999999999999999999999999999999876554433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.7e-37  Score=246.96  Aligned_cols=233  Identities=14%  Similarity=0.135  Sum_probs=206.4

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      +|...|++++|+|++++|++++.||.|++||+.+++  ....+..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~  174 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            799999999999999999999999999999999877  667788899999999999999999999999999999999998


Q ss_pred             eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      .+..+. +...+.+++|+|++..+++++.     ++.+.+|++..      .+.... ..+...+.+++|+|++++++++
T Consensus       175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~------~~~~~~-~~~~~~v~~~~~s~~~~~l~~~  242 (337)
T 1gxr_A          175 LVRQFQGHTDGASCIDISNDGTKLWTGGL-----DNTVRSWDLRE------GRQLQQ-HDFTSQIFSLGYCPTGEWLAVG  242 (337)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTT------TEEEEE-EECSSCEEEEEECTTSSEEEEE
T ss_pred             eeeeeecccCceEEEEECCCCCEEEEEec-----CCcEEEEECCC------CceEee-ecCCCceEEEEECCCCCEEEEE
Confidence            888887 7889999999999998888765     45666776642      233333 3578889999999999999999


Q ss_pred             eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCC
Q 021925          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL  244 (305)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  244 (305)
                      +.|+.|++||+++++... +.   .|...+.+++|+|++++|++++.||.|++||+++++.+....+..++.+++|+|++
T Consensus       243 ~~~~~i~~~~~~~~~~~~-~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  318 (337)
T 1gxr_A          243 MESSNVEVLHVNKPDKYQ-LH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD  318 (337)
T ss_dssp             ETTSCEEEEETTSSCEEE-EC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTS
T ss_pred             cCCCcEEEEECCCCCeEE-Ec---CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCC
Confidence            999999999999887643 33   68899999999999999999999999999999999998877789999999999999


Q ss_pred             CcEEEeeCCcEE
Q 021925          245 DHVCIGEPQTIK  256 (305)
Q Consensus       245 ~~l~~~~~~~~~  256 (305)
                      ++|++++.++..
T Consensus       319 ~~l~~~~~dg~i  330 (337)
T 1gxr_A          319 KYIVTGSGDKKA  330 (337)
T ss_dssp             CEEEEEETTSCE
T ss_pred             CEEEEecCCCeE
Confidence            999999999873

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.1e-37  Score=249.42  Aligned_cols=244  Identities=14%  Similarity=0.193  Sum_probs=209.1

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee---eEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---LGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~---~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~v   78 (305)
                      +...+|.+.|++++|+|++++|++++ ||.|++||+.+++.   ...+.  +|...|.+++|+|++++|++++.||.|++
T Consensus        45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            44568999999999999999999998 99999999987653   23333  78999999999999999999999999999


Q ss_pred             EecCCCC--eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925           79 WNVETGA--QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (305)
Q Consensus        79 wd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (305)
                      ||+++++  ....+. +...+.+++|+|++..+++++.     ++.+.+|++.      ..+....+..|...+.+++|+
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~v~~~d~~------~~~~~~~~~~~~~~i~~~~~~  192 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS-----DGNIAVWDLH------NQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSCEEEEEEC
T ss_pred             EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC-----CCcEEEEeCC------CCceeeeeecccCceEEEEEC
Confidence            9999887  333343 6778999999999998888765     4556667653      346677888899999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCe
Q 021925          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV  235 (305)
Q Consensus       156 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v  235 (305)
                      |+++++++++.||.|++||+++++.+..+.    +...+.+++|+|++++|++++.||.|++||+++++......+..+|
T Consensus       193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v  268 (337)
T 1gxr_A          193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV  268 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCE
T ss_pred             CCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccce
Confidence            999999999999999999999998888774    7788999999999999999999999999999998876655588999


Q ss_pred             eEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          236 NAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      .+++|+|++++|++++.++.     +++|+...
T Consensus       269 ~~~~~~~~~~~l~~~~~dg~-----i~~~~~~~  296 (337)
T 1gxr_A          269 LSLKFAYCGKWFVSTGKDNL-----LNAWRTPY  296 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSE-----EEEEETTT
T ss_pred             eEEEECCCCCEEEEecCCCc-----EEEEECCC
Confidence            99999999999999999987     55565543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.7e-37  Score=273.00  Aligned_cols=241  Identities=18%  Similarity=0.293  Sum_probs=204.9

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|...|++++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||....
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~  504 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE  504 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999998654


Q ss_pred             CeeEEEe----eCCCceEEEEecCC--ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           85 AQLFTFN----FDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        85 ~~~~~~~----~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      .......    +...+.+++|+|++  ..+++++.     ++.+.+|++.      ..+....+.+|.+.|++++|+|++
T Consensus       505 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----d~~v~vwd~~------~~~~~~~~~~h~~~v~~v~~spdg  573 (694)
T 3dm0_A          505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW-----DKTVKVWNLS------NCKLRSTLAGHTGYVSTVAVSPDG  573 (694)
T ss_dssp             EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET-----TSCEEEEETT------TCCEEEEECCCSSCEEEEEECTTS
T ss_pred             cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC-----CCeEEEEECC------CCcEEEEEcCCCCCEEEEEEeCCC
Confidence            3333221    56679999999986  35555543     5667777764      346677889999999999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC------
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE------  232 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------  232 (305)
                      ++|++|+.||.|++||+++++.+..+.    +...+.+++|+|++.+|++++ |+.|++||+++++.+..+...      
T Consensus       574 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~  648 (694)
T 3dm0_A          574 SLCASGGKDGVVLLWDLAEGKKLYSLE----ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAE  648 (694)
T ss_dssp             SEEEEEETTSBCEEEETTTTEEEECCB----CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----
T ss_pred             CEEEEEeCCCeEEEEECCCCceEEEec----CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccc
Confidence            999999999999999999999888775    567899999999998777765 667999999999888766411      


Q ss_pred             --------------CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          233 --------------RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       233 --------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                                    ..+++++|+|+|++|++|+.|+.     +++|++
T Consensus       649 ~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~-----i~iW~i  691 (694)
T 3dm0_A          649 KADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV-----IRVWGI  691 (694)
T ss_dssp             ------------CCCCEEEEEECTTSSEEEEEETTSE-----EEEEEC
T ss_pred             cccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe-----EEEEec
Confidence                          12688999999999999999998     555543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-37  Score=256.65  Aligned_cols=251  Identities=12%  Similarity=0.084  Sum_probs=210.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe------eeEEecCCCcceEEEEEcCC----C---cEEEEEe
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRD----S---MTLITGS   71 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~------~~~~~~~~~~~v~~i~~~~~----~---~~l~s~~   71 (305)
                      .+.+|.++|++++|+|  ++|++|+.||.|++|++.+++      .+..+.+|...|.+++|+|+    +   ++|++++
T Consensus        11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~   88 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   88 (397)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence            5789999999999999  799999999999999999887      78888899999999999999    9   9999999


Q ss_pred             CCCcEEEEecCCCCe-----eEEEe-e-----CCCceEEEEe----cCCce-EEEeCCcceeeeeeEEEEEeec------
Q 021925           72 ADQTAKLWNVETGAQ-----LFTFN-F-----DSPARSVDFA----VGDKL-AVITTDPFMELNSAIHVKRIAR------  129 (305)
Q Consensus        72 ~dg~v~vwd~~~~~~-----~~~~~-~-----~~~v~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~------  129 (305)
                      .||.|++||+++++.     ...+. +     ...+.+++|+    |++.. +++++.     ++.+.+|++..      
T Consensus        89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV-----KGTTYIWKFHPFADESN  163 (397)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET-----TSCEEEEEEESSSSHHH
T ss_pred             CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC-----CCcEEEEeCCccccccc
Confidence            999999999998886     66666 4     4899999999    99998 777754     56777888765      


Q ss_pred             ccCCCCCceEEEE-------eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCC---ccceEEEEE
Q 021925          130 DPADQGGESVLIL-------KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH---KKTITSLAK  199 (305)
Q Consensus       130 ~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~  199 (305)
                      ..... ..+...+       ..|...|.+++|+|++ ++++++.||.|++||+++++.+..+....+|   ...|.+++|
T Consensus       164 ~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          164 SLTLN-WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             HTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             cceee-ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence            22111 1222244       4588999999999999 9999999999999999999988888721127   899999999


Q ss_pred             cCCCCEEEEEeCC---CeEEEEEcCCceEEEEEe--------------eCCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925          200 AADGSHFLTGSLD---KSAKLWDARTLELIKTYV--------------TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       200 ~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                      +|++++|++++.|   |.|++||+++++++..+.              +...|.+++|+|++++|++++.++.     ++
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~  316 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-----LR  316 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-----EE
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe-----EE
Confidence            9999999999999   999999999999888886              6788999999999999999999987     55


Q ss_pred             hhhhhhh
Q 021925          263 LFVLFLD  269 (305)
Q Consensus       263 ~~~~~~~  269 (305)
                      +|++...
T Consensus       317 iwd~~~~  323 (397)
T 1sq9_A          317 FWDVKTK  323 (397)
T ss_dssp             EEETTTT
T ss_pred             EEEcCCC
Confidence            5555433

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.1e-36  Score=260.93  Aligned_cols=238  Identities=28%  Similarity=0.497  Sum_probs=209.2

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|.+.|.+++|+|+++.|++++.||.|++||.. ++.+..+.+|...|.+++|+|++++|++++.||.|++||. ++
T Consensus       298 ~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~  375 (577)
T 2ymu_A          298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NG  375 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TC
T ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CC
Confidence            467999999999999999999999999999999975 4556778899999999999999999999999999999995 56


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      +.+..+. +...+.+++|+|+++.+++++.     ++.+.+|+.       ..+....+.+|...|++++|+|++++|++
T Consensus       376 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----d~~v~~~~~-------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~  443 (577)
T 2ymu_A          376 QLLQTLTGHSSSVRGVAFSPDGQTIASASD-----DKTVKLWNR-------NGQLLQTLTGHSSSVWGVAFSPDDQTIAS  443 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSEEEEECT-------TCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             CEEEEecCCCCCeEEEEECCCCCEEEEEeC-----CCEEEEEeC-------CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence            6666666 7889999999999999988765     344555542       34677888999999999999999999999


Q ss_pred             eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~  242 (305)
                      ++.|+.|++||. +++.+..+.   +|...|++++|+|++++|++++.|+.|++||. +++++..+. |..+|++++|+|
T Consensus       444 ~~~d~~v~~w~~-~~~~~~~~~---~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~  518 (577)
T 2ymu_A          444 ASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP  518 (577)
T ss_dssp             EETTSEEEEEET-TSCEEEEEE---CCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT
T ss_pred             EcCCCEEEEEEC-CCCEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC
Confidence            999999999996 466666666   79999999999999999999999999999995 678888887 888999999999


Q ss_pred             CCCcEEEeeCCcEEEEEEeehhhh
Q 021925          243 LLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       243 ~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                      ++++|++++.|+.     +++|+.
T Consensus       519 dg~~l~s~~~dg~-----v~lwd~  537 (577)
T 2ymu_A          519 DGQTIASASDDKT-----VKLWNR  537 (577)
T ss_dssp             TSSCEEEEETTSE-----EEEECT
T ss_pred             CCCEEEEEECcCE-----EEEEeC
Confidence            9999999999987     666764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.2e-37  Score=248.55  Aligned_cols=243  Identities=14%  Similarity=0.170  Sum_probs=194.9

Q ss_pred             EecccccceEEEEEcCC---CCEEEEeeCCCceEEEEcCC-Ceee-EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEE
Q 021925            5 LMKGHERPLTYLKYNKD---GDLLFSCAKDHTPTVWFADN-GERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~---~~~l~s~~~dg~v~iw~~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vw   79 (305)
                      .+.+|.+.|++++|+|+   |++|++|+.||.|++||+++ ++.+ ..+.+|.+.|.+++|+|++++|++++.||.|++|
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  113 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW  113 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence            46899999999999998   69999999999999999987 5544 7788899999999999999999999999999999


Q ss_pred             ecCCCCeeEEEeeCCCceEEEE--ecCCceEEEeCCcceeeeeeEEEEEeecccCCC-----------------------
Q 021925           80 NVETGAQLFTFNFDSPARSVDF--AVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-----------------------  134 (305)
Q Consensus        80 d~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  134 (305)
                      |+++++.+....+...+.+++|  ++++..+++++.     ++.+.+|++.......                       
T Consensus       114 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (368)
T 3mmy_A          114 DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW-----DKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATA  188 (368)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEET-----TSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEG
T ss_pred             EcCCCCceeeccccCceEEEEEEeCCCCCEEEEccC-----CCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeC
Confidence            9999998888889999999999  888888887764     3344455443211000                       


Q ss_pred             -----------CCce-EEEEeccCCCeeEEEEcCCCCE----EEEeeCCCcEEEEeCCCC---cEeeeeccccCCcc---
Q 021925          135 -----------GGES-VLILKGPQGRINRAVWGPLNRT----IISAGEDAIVRIWDTETG---KLLKESDKETGHKK---  192 (305)
Q Consensus       135 -----------~~~~-~~~~~~~~~~i~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~---  192 (305)
                                 .... ......+.....++.+.++...    +++++.||.|++||++..   .....+.   .|..   
T Consensus       189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~---~~~~~~~  265 (368)
T 3mmy_A          189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK---CHRSNGT  265 (368)
T ss_dssp             GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE---CSEEC--
T ss_pred             CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee---eeecccc
Confidence                       0000 0001112234555666555544    999999999999999987   3344444   4544   


Q ss_pred             ---------ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          193 ---------TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       193 ---------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                               .|++++|+|++++|++++.||.|++||+++++++..+. +..+|.+++|+|++++|++|+.++.
T Consensus       266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~  338 (368)
T 3mmy_A          266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDW  338 (368)
T ss_dssp             --CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred             cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence                     79999999999999999999999999999999999887 7889999999999999999998873

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.8e-37  Score=274.94  Aligned_cols=242  Identities=14%  Similarity=0.191  Sum_probs=218.5

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ..+.+|.+.|++++|+|+|++|++++.||.|++||+.+++.+..+.+|.++|.+++|+|++++|++++.||.|++||+.+
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~   86 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC-CCCEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTI  161 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l  161 (305)
                      ++.+..+. +...+.+++|+|++..+++++.     ++.+.+|++...     ......+.+|...|.+++|+| +++.+
T Consensus        87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~~l  156 (814)
T 3mkq_A           87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNWENN-----WALEQTFEGHEHFVMCVAFNPKDPSTF  156 (814)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSEEEEEEGGGT-----SEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             CcEEEEEecCCCCEEEEEEeCCCCEEEEEcC-----CCEEEEEECCCC-----ceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence            99988888 8889999999999998888765     556777776432     356677889999999999999 88999


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  238 (305)
                      ++++.||.|++||+.+++....+..  .+...+.+++|+|  ++.+|++++.||.|++||+++++++..+. +...|.++
T Consensus       157 ~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~  234 (814)
T 3mkq_A          157 ASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA  234 (814)
T ss_dssp             EEEETTSEEEEEETTCSSCSEEEEC--CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCcceeEEec--CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            9999999999999998877766652  3448899999999  99999999999999999999999998888 78899999


Q ss_pred             EecCCCCcEEEeeCCcEEE
Q 021925          239 TMSPLLDHVCIGEPQTIKF  257 (305)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~  257 (305)
                      +|+|+++++++++.++...
T Consensus       235 ~~~~~~~~l~~~~~dg~v~  253 (814)
T 3mkq_A          235 VFHPTLPIIISGSEDGTLK  253 (814)
T ss_dssp             EECSSSSEEEEEETTSCEE
T ss_pred             EEcCCCCEEEEEeCCCeEE
Confidence            9999999999999988733

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.9e-36  Score=250.11  Aligned_cols=247  Identities=21%  Similarity=0.326  Sum_probs=206.2

Q ss_pred             eEecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEec-------------CCCcceEEEEEcC-CCcEEE
Q 021925            4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYR-------------GHNGAVWCCDVSR-DSMTLI   68 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-------------~~~~~v~~i~~~~-~~~~l~   68 (305)
                      ..+.+|.++|++++|+| ++++|++|+.||.|++||+.+++....+.             +|...|.+++|+| ++.+|+
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            35788999999999999 99999999999999999999876554443             5999999999999 778999


Q ss_pred             EEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCc---eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925           69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK---LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (305)
Q Consensus        69 s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (305)
                      +++.||.|++||+++++....+.....+.++.+.+.+.   .++++..     .+.+.+|++.      ..+....+..|
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~d~~------~~~~~~~~~~~  185 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTR-----GPKVQLCDLK------SGSCSHILQGH  185 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEES-----SSSEEEEESS------SSCCCEEECCC
T ss_pred             EEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcC-----CCeEEEEeCC------CcceeeeecCC
Confidence            99999999999999999999999999999999998543   6776654     4567777764      23566778899


Q ss_pred             CCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCc-Eeeeec------------cccCCccceEEEEEcCCCCEEEEEeC
Q 021925          146 QGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGK-LLKESD------------KETGHKKTITSLAKAADGSHFLTGSL  211 (305)
Q Consensus       146 ~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~~~~~  211 (305)
                      ...|.+++|+|+++ .+++++.||.|++||++++. .+..+.            ....|...|.+++|+|++++|++++.
T Consensus       186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  265 (408)
T 4a11_B          186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT  265 (408)
T ss_dssp             CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence            99999999999998 58899999999999998765 222221            11368889999999999999999999


Q ss_pred             CCeEEEEEcCCce-----------------------------------------------EEEEEe-eCCCeeEEEecCC
Q 021925          212 DKSAKLWDARTLE-----------------------------------------------LIKTYV-TERPVNAVTMSPL  243 (305)
Q Consensus       212 dg~i~iwd~~~~~-----------------------------------------------~~~~~~-~~~~v~~~~~~~~  243 (305)
                      ||.|++||+++++                                               ++..+. |..+|.+++|+|+
T Consensus       266 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~  345 (408)
T 4a11_B          266 DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN  345 (408)
T ss_dssp             TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETT
T ss_pred             CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCC
Confidence            9999999987643                                               344444 7788999999999


Q ss_pred             CCcEEEeeCCcEEEEEEe
Q 021925          244 LDHVCIGEPQTIKFMLLV  261 (305)
Q Consensus       244 ~~~l~~~~~~~~~~~~~~  261 (305)
                      +++|++|+.|+...++.+
T Consensus       346 ~~~l~s~~~dg~i~iw~~  363 (408)
T 4a11_B          346 FQELYSGSRDCNILAWVP  363 (408)
T ss_dssp             TTEEEEEETTSCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEeC
Confidence            999999999998444333

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-36  Score=249.07  Aligned_cols=244  Identities=14%  Similarity=0.191  Sum_probs=202.3

Q ss_pred             EecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCeeeEEec--CCCcceEEEEEcC-CCcEEEEEeCCCcEEEEe
Q 021925            5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSR-DSMTLITGSADQTAKLWN   80 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd   80 (305)
                      .+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+.  +|.+.|.+++|+| ++++|++++.|+.|++||
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  147 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD  147 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence            478999999999999999 999999999999999999888777665  6999999999999 779999999999999999


Q ss_pred             cCCCCeeEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           81 VETGAQLFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        81 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      +++ +.+..+.    +...+.+++|+|++..+++++.     ++.+.+|++.       .+.+..+.+|...|.+++|+|
T Consensus       148 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~-------~~~~~~~~~h~~~v~~~~~~~  214 (383)
T 3ei3_B          148 FSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS-----TGRLLLLGLD-------GHEIFKEKLHKAKVTHAEFNP  214 (383)
T ss_dssp             TTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEET-----TSEEEEEETT-------SCEEEEEECSSSCEEEEEECS
T ss_pred             CCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECC-----CCCEEEEECC-------CCEEEEeccCCCcEEEEEECC
Confidence            986 4444444    2367999999999999998875     5667777762       457888899999999999999


Q ss_pred             CCC-EEEEeeCCCcEEEEeCCC----CcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          157 LNR-TIISAGEDAIVRIWDTET----GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       157 ~~~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      +++ ++++++.|+.|++||+++    +..+..+    +|...|++++|+| ++++|++++.|+.|++||+++++....+.
T Consensus       215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence            998 999999999999999997    5555555    4889999999999 99999999999999999999887765554


Q ss_pred             -eC-----------------CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          231 -TE-----------------RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       231 -~~-----------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                       +.                 ..+..++|+|++++  +|+.++.     +++|+.......
T Consensus       291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-----i~iwd~~~~~~~  343 (383)
T 3ei3_B          291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-----IDIYDANSGGLV  343 (383)
T ss_dssp             ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-----EEEEETTTCCEE
T ss_pred             cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-----EEEEecCCCcee
Confidence             21                 23445677777776  6667776     666665544443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.4e-36  Score=250.21  Aligned_cols=238  Identities=15%  Similarity=0.186  Sum_probs=208.1

Q ss_pred             eEecccccceEEEEEcCC----C---CEEEEeeCCCceEEEEcCCCee-----eEEecCC-----CcceEEEEEc----C
Q 021925            4 ILMKGHERPLTYLKYNKD----G---DLLFSCAKDHTPTVWFADNGER-----LGTYRGH-----NGAVWCCDVS----R   62 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~----~---~~l~s~~~dg~v~iw~~~~~~~-----~~~~~~~-----~~~v~~i~~~----~   62 (305)
                      ..+.+|..+|++++|+|+    +   ++|++++.||.|++|++.+++.     ...+..|     ...|.+++|+    |
T Consensus        56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  135 (397)
T 1sq9_A           56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR  135 (397)
T ss_dssp             EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--
T ss_pred             eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC
Confidence            357799999999999999    9   9999999999999999998886     8888888     5899999999    9


Q ss_pred             CCcE-EEEEeCCCcEEEEecCC------CCeeE-----EEe--------eCCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925           63 DSMT-LITGSADQTAKLWNVET------GAQLF-----TFN--------FDSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (305)
Q Consensus        63 ~~~~-l~s~~~dg~v~vwd~~~------~~~~~-----~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (305)
                      ++++ |++++.||.|++||+++      ++.+.     .+.        +...+.+++|+|++ .++++..     ++.+
T Consensus       136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-----dg~i  209 (397)
T 1sq9_A          136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN-----NGTV  209 (397)
T ss_dssp             --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT-----TSEE
T ss_pred             CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC-----CCcE
Confidence            9999 99999999999999998      66555     553        57889999999999 7777765     4566


Q ss_pred             EEEEeecccCCCCCceEEEEec---c---CCCeeEEEEcCCCCEEEEeeCC---CcEEEEeCCCCcEeeeeccccC----
Q 021925          123 HVKRIARDPADQGGESVLILKG---P---QGRINRAVWGPLNRTIISAGED---AIVRIWDTETGKLLKESDKETG----  189 (305)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~----  189 (305)
                      .+|++.      ..+.+..+..   |   ...|.+++|+|++++|++++.|   |.|++||+++++.+..+.   .    
T Consensus       210 ~i~d~~------~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~---~~~~~  280 (397)
T 1sq9_A          210 QISELS------TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS---VPTHS  280 (397)
T ss_dssp             EEEETT------TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC---BC---
T ss_pred             EEEECC------CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec---cCccc
Confidence            777764      2466777888   8   9999999999999999999999   999999999999888886   5    


Q ss_pred             ---------CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-------e---------------CCCeeEE
Q 021925          190 ---------HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-------T---------------ERPVNAV  238 (305)
Q Consensus       190 ---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~---------------~~~v~~~  238 (305)
                               |...|.+++|+|++++|++++.||.|++||+++++++..+.       +               ..+|.++
T Consensus       281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~  360 (397)
T 1sq9_A          281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV  360 (397)
T ss_dssp             -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred             ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence                     88999999999999999999999999999999999998887       3               7889999


Q ss_pred             EecCCC----------CcEEEeeCCcEE
Q 021925          239 TMSPLL----------DHVCIGEPQTIK  256 (305)
Q Consensus       239 ~~~~~~----------~~l~~~~~~~~~  256 (305)
                      +|+|++          ++|++|+.++..
T Consensus       361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i  388 (397)
T 1sq9_A          361 KFLKKGWRSGMGADLNESLCCVCLDRSI  388 (397)
T ss_dssp             EEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred             EeccccccccccccccceEEEecCCCcE
Confidence            999998          799999999983

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-36  Score=251.34  Aligned_cols=240  Identities=21%  Similarity=0.341  Sum_probs=209.6

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      |.+.|++++|+|++++|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.+.
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            788999999999999999999999999999 6788889999999999999999999999999999999999999998888


Q ss_pred             EEeeC-CC---------------ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925           89 TFNFD-SP---------------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (305)
Q Consensus        89 ~~~~~-~~---------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (305)
                      .+... ..               +.++.|++++.+++.+.      .+.+.++++..      .+....+..|...|.++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~i~~~d~~~------~~~~~~~~~~~~~i~~~  253 (425)
T 1r5m_A          186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP------KGAIFVYQITE------KTPTGKLIGHHGPISVL  253 (425)
T ss_dssp             EECCC---------------CCCBSCCEEEETTEEEEECG------GGCEEEEETTC------SSCSEEECCCSSCEEEE
T ss_pred             EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC------CCeEEEEEcCC------CceeeeeccCCCceEEE
Confidence            77733 33               89999999987665554      34566666542      35667778999999999


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-e
Q 021925          153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T  231 (305)
Q Consensus       153 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~  231 (305)
                      +|+|++++|++++.||.|++||+++++.+..+.   .|...+.+++|+|++ .+++++.||.|++||+++++.+..+. +
T Consensus       254 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~  329 (425)
T 1r5m_A          254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY---GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD  329 (425)
T ss_dssp             EEETTTTEEEEEETTSCEEEECSSSBSCSEEEC---CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT
T ss_pred             EECCCCCEEEEEcCCCEEEEEECCCCccceEec---CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC
Confidence            999999999999999999999999988888776   688999999999999 99999999999999999999998887 6


Q ss_pred             CCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925          232 ERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDI  270 (305)
Q Consensus       232 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  270 (305)
                      ..++.+++|+|++++|++++.++.     +.+|++....
T Consensus       330 ~~~i~~~~~s~~~~~l~~~~~dg~-----i~i~~~~~~~  363 (425)
T 1r5m_A          330 GVPIFAGRISQDGQKYAVAFMDGQ-----VNVYDLKKLN  363 (425)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSC-----EEEEECHHHH
T ss_pred             CccEEEEEEcCCCCEEEEEECCCe-----EEEEECCCCc
Confidence            889999999999999999999987     5555554433

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-36  Score=237.56  Aligned_cols=243  Identities=16%  Similarity=0.242  Sum_probs=195.1

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|++...
T Consensus        13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~   91 (313)
T 3odt_A           13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT   91 (313)
T ss_dssp             EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred             HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence            58899999999999 99999999999999999999999999999999999999999999999999999999999998654


Q ss_pred             ---CeeEEEe-eCCCceEEEEecCCceEEEe-CCcceeee-----------------------------------eeEEE
Q 021925           85 ---AQLFTFN-FDSPARSVDFAVGDKLAVIT-TDPFMELN-----------------------------------SAIHV  124 (305)
Q Consensus        85 ---~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~~~~~~~~-----------------------------------~~~~~  124 (305)
                         +.+..+. +...+.++.+.  +..++++ .++.+.++                                   +.+.+
T Consensus        92 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  169 (313)
T 3odt_A           92 SGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL  169 (313)
T ss_dssp             TTSCC-CEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             CCCCcccchhhcccCEEEEEec--CCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence               2333333 55566666662  2233332 22222211                                   12222


Q ss_pred             EEeecccCCCCCceEEEEec-cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC
Q 021925          125 KRIARDPADQGGESVLILKG-PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG  203 (305)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  203 (305)
                      |+        ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+.   +|...|++++|+|++
T Consensus       170 ~d--------~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~  237 (313)
T 3odt_A          170 WQ--------NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE---GHESFVYCIKLLPNG  237 (313)
T ss_dssp             EE--------TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTS
T ss_pred             Ee--------cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh---cCCceEEEEEEecCC
Confidence            22        1234455555 889999999999998 9999999999999999999998887   789999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925          204 SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLD  269 (305)
Q Consensus       204 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  269 (305)
                       .|++++.||.|++||+++++++..+. +..+|.+++|+|+++ +++++.++.     +++|++...
T Consensus       238 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-----i~iw~~~~~  297 (313)
T 3odt_A          238 -DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNL-----VRIFSQEKS  297 (313)
T ss_dssp             -CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSC-----EEEEESCGG
T ss_pred             -CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCc-----EEEEeCCCC
Confidence             68999999999999999999999888 677999999999998 566778877     566665443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.6e-37  Score=251.58  Aligned_cols=245  Identities=13%  Similarity=0.124  Sum_probs=192.9

Q ss_pred             eEecccccceEEEEEcCCCCEEEEe-----------eCCCceEEEEcCCCeee----EEe-----cCCCcceEEEEEcCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSC-----------AKDHTPTVWFADNGERL----GTY-----RGHNGAVWCCDVSRD   63 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~-----------~~dg~v~iw~~~~~~~~----~~~-----~~~~~~v~~i~~~~~   63 (305)
                      +.|.+|...|.+++++  ++.+++|           +.|+.+++|++.+.+..    ...     ..+...+.+++|+||
T Consensus        67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD  144 (365)
T 4h5i_A           67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE  144 (365)
T ss_dssp             EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred             EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence            4577899999988765  4566655           45788999998764321    111     234567899999999


Q ss_pred             CcEEEEE--eCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCce--E
Q 021925           64 SMTLITG--SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES--V  139 (305)
Q Consensus        64 ~~~l~s~--~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  139 (305)
                      |++++++  +.|++|+|||+++++.+..+.+...|.+++|+|+++++++++++..      ..+...      .++.  .
T Consensus       145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~------~~~~~~------~~~~~~~  212 (365)
T 4h5i_A          145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSL------EVISTV------TGSCIAR  212 (365)
T ss_dssp             SSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCE------EEEETT------TCCEEEE
T ss_pred             CCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeE------EEEEec------cCcceee
Confidence            9988654  4689999999999999999999999999999999999999876433      222221      1122  2


Q ss_pred             EEEeccCCCeeEEEEcCCCCEEEEeeCCC----cEEEEeCCCCcEee-eeccccCCccceEEEEEcCCCCEEEEEeCCCe
Q 021925          140 LILKGPQGRINRAVWGPLNRTIISAGEDA----IVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKS  214 (305)
Q Consensus       140 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  214 (305)
                      .....|...+.+++|+|+++++++++.|+    .+++||+....... ......+|...|++++|+|+|++||+|+.|++
T Consensus       213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~  292 (365)
T 4h5i_A          213 KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS  292 (365)
T ss_dssp             ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC
T ss_pred             eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE
Confidence            23456888899999999999999999887    68899987665321 11222378899999999999999999999999


Q ss_pred             EEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          215 AKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       215 i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      |+|||+++++++..+.  |..+|++++|+|||++|++|+.|+.     +++|++.
T Consensus       293 V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t-----vrvw~ip  342 (365)
T 4h5i_A          293 IALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANT-----IHIIKLP  342 (365)
T ss_dssp             EEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSE-----EEEEECC
T ss_pred             EEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCe-----EEEEEcC
Confidence            9999999999998864  8999999999999999999999998     6666653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-36  Score=243.29  Aligned_cols=246  Identities=14%  Similarity=0.156  Sum_probs=214.8

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC-----CcEEEE
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLW   79 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~vw   79 (305)
                      .+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. +...|.+++|+|+++++++++.+     |.|++|
T Consensus        69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~  147 (369)
T 3zwl_B           69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY  147 (369)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred             hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence            578899999999999999999999999999999999999998888 88999999999999999999998     999999


Q ss_pred             ecCCCCee-----------EEEe-eCC--CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925           80 NVETGAQL-----------FTFN-FDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (305)
Q Consensus        80 d~~~~~~~-----------~~~~-~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (305)
                      |++++...           ..+. +..  .+.+++|+|++..++++..     ++.+.+|++..     .......+..|
T Consensus       148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~-----~~~~~~~~~~~  217 (369)
T 3zwl_B          148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----DGKISKYDVSN-----NYEYVDSIDLH  217 (369)
T ss_dssp             EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----TSEEEEEETTT-----TTEEEEEEECC
T ss_pred             EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----CCEEEEEECCC-----CcEeEEEEecC
Confidence            99766432           2222 333  8999999999998888765     45666776642     24677888899


Q ss_pred             CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC------------
Q 021925          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK------------  213 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------  213 (305)
                      ...|.+++|+|++++|++++.||.|++||+++++.+..+.    +...+..++|+|+++++++++.++            
T Consensus       218 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  293 (369)
T 3zwl_B          218 EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEG  293 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECCC------------
T ss_pred             CCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCC
Confidence            9999999999999999999999999999999999988886    778999999999999999999988            


Q ss_pred             --eEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925          214 --SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDI  270 (305)
Q Consensus       214 --~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  270 (305)
                        .+++||..+++++..+. |...|.+++|+|++++|++++.|+.     +++|++....
T Consensus       294 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-----v~iw~~~~~~  348 (369)
T 3zwl_B          294 KFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGF-----IRLHHFEKSY  348 (369)
T ss_dssp             -CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-----EEEEEECHHH
T ss_pred             cceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCe-----EEEEECcccc
Confidence              89999999999999888 8889999999999999999999997     5555554433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-37  Score=272.19  Aligned_cols=247  Identities=19%  Similarity=0.332  Sum_probs=205.8

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcC--CCeeeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEEE
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW   79 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~vw   79 (305)
                      .++.+|.++|++++|+|+|++|++|+.||.|++||+.  +++.+..+.+|.++|.+++|+|+  +++|++|+.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            3578999999999999999999999999999999998  55677889999999999999987  8999999999999999


Q ss_pred             ecCCCC--eeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925           80 NVETGA--QLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (305)
Q Consensus        80 d~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (305)
                      |+++++  .+..+. +...+.+++|+|+  +..+++++.     ++.+.+|++....    ......+.+|...|.+++|
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-----dg~I~vwdl~~~~----~~~~~~~~~~~~~v~~l~~  153 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-----DGKVSVVEFKENG----TTSPIIIDAHAIGVNSASW  153 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----TSEEEEEECCSSS----CCCCEEEECCSSCEEEEEE
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC-----CCcEEEEEeecCC----CcceeEeecCCCceEEEEe
Confidence            999886  444444 7889999999998  888888765     5677778775431    2345567889999999999


Q ss_pred             cC-------------CCCEEEEeeCCCcEEEEeCCCCc----EeeeeccccCCccceEEEEEcCC---CCEEEEEeCCCe
Q 021925          155 GP-------------LNRTIISAGEDAIVRIWDTETGK----LLKESDKETGHKKTITSLAKAAD---GSHFLTGSLDKS  214 (305)
Q Consensus       155 ~~-------------~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~  214 (305)
                      +|             +++++++|+.||.|++||++++.    ....+.   +|...|++++|+|+   +++|++++.||.
T Consensus       154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~  230 (753)
T 3jro_A          154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDVAWSPTVLLRSYLASVSQDRT  230 (753)
T ss_dssp             CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred             cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec---CCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence            99             58999999999999999998763    344444   79999999999999   899999999999


Q ss_pred             EEEEEcCCceE-----EEE-EeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          215 AKLWDARTLEL-----IKT-YVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       215 i~iwd~~~~~~-----~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      |++||+++++.     ... ..+...|.+++|+|+++++++|+.++.     +++|+..
T Consensus       231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~-----I~vwd~~  284 (753)
T 3jro_A          231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK-----VTLWKEN  284 (753)
T ss_dssp             EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC-----EECCBCC
T ss_pred             EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE-----EEEEecC
Confidence            99999998642     111 126778999999999999999999987     6666654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-35  Score=244.70  Aligned_cols=241  Identities=15%  Similarity=0.245  Sum_probs=206.2

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC-CCe
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQ   86 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~-~~~   86 (305)
                      .|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+  ++.|++++.||.|++||++. ...
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcce
Confidence            489999999999999999999999999999999999999999999999999994  56999999999999999984 455


Q ss_pred             eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC-EEEEe
Q 021925           87 LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISA  164 (305)
Q Consensus        87 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  164 (305)
                      +..+. +...+.+++|+|++..+++++.     ++.+.+|++.      ..+....+..|...|.+++|+|++. .++++
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~v~iwd~~------~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~  278 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQLASGGN-----DNVVQIWDAR------SSIPKFTKTNHNAAVKAVAWCPWQSNLLATG  278 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------CSSEEEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred             eeEEcCCCCCeeEEEEcCCCCEEEEEeC-----CCeEEEccCC------CCCccEEecCCcceEEEEEECCCCCCEEEEe
Confidence            55555 8889999999999999998875     4567777764      3467778889999999999999774 55565


Q ss_pred             e--CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEE--EeCCCeEEEEEcCCceEEEEE--e-eCCCeeE
Q 021925          165 G--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT--GSLDKSAKLWDARTLELIKTY--V-TERPVNA  237 (305)
Q Consensus       165 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~--~-~~~~v~~  237 (305)
                      +  .|+.|++||+++++.+..+.    +...+.+++|+|+++.|++  |+.||.|++||+.+++.....  . |...|.+
T Consensus       279 ~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~  354 (401)
T 4aez_A          279 GGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLY  354 (401)
T ss_dssp             CCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEE
Confidence            4  79999999999999988885    6778999999999999998  448999999999987665543  3 7889999


Q ss_pred             EEecCCCCcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925          238 VTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDI  270 (305)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  270 (305)
                      ++|+|++++|++++.|+.     +++|++....
T Consensus       355 ~~~s~dg~~l~s~~~dg~-----i~iw~~~~~~  382 (401)
T 4aez_A          355 SALSPDGRILSTAASDEN-----LKFWRVYDGD  382 (401)
T ss_dssp             EEECTTSSEEEEECTTSE-----EEEEECCC--
T ss_pred             EEECCCCCEEEEEeCCCc-----EEEEECCCCc
Confidence            999999999999999997     6666654433

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.5e-36  Score=278.56  Aligned_cols=248  Identities=20%  Similarity=0.331  Sum_probs=218.7

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ..+.+|.+.|++++|+|+|++|++|+.||.|++||..+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      ++.+..+. +...+.+++|+|+  +..+++++.     ++.+.+|++.      .++....+.+|.+.|.+++|+|++++
T Consensus       689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~-----d~~v~vwd~~------~~~~~~~~~~h~~~v~~~~~sp~~~~  757 (1249)
T 3sfz_A          689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN-----DFFLKLWDLN------QKECRNTMFGHTNSVNHCRFSPDDEL  757 (1249)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSCCEEEEEET-----TSCEEEEETT------SSSEEEEECCCSSCEEEEEECSSTTE
T ss_pred             CceEEEEcCCCCcEEEEEEecCCCceEEEEEeC-----CCeEEEEECC------CcchhheecCCCCCEEEEEEecCCCE
Confidence            99998887 8889999999994  446666554     4567777763      34677888999999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCcEeeeecc----------------------------------------------------cc
Q 021925          161 IISAGEDAIVRIWDTETGKLLKESDK----------------------------------------------------ET  188 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------------------------------------~~  188 (305)
                      +++++.||.|++||+++++....+..                                                    ..
T Consensus       758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~  837 (1249)
T 3sfz_A          758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT  837 (1249)
T ss_dssp             EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence            99999999999999987765443321                                                    01


Q ss_pred             CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          189 GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       189 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      +|...+.+++|+|+++++++++.||.|++||+.+++.+..+. |...|.+++|+|+++.+++++.++.     +.+|+..
T Consensus       838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~-----v~vw~~~  912 (1249)
T 3sfz_A          838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT-----IRVWETK  912 (1249)
T ss_dssp             SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-----EEEEEHH
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCe-----EEEEEcc
Confidence            567889999999999999999999999999999999998887 8889999999999999999999987     5556543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-37  Score=253.26  Aligned_cols=243  Identities=14%  Similarity=0.127  Sum_probs=204.4

Q ss_pred             cccceEEEEEcCC----CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925            9 HERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         9 h~~~v~~~~~~~~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      |.+.|++++|+|+    +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            6688999999998    67999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             CCeeEEE----eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC----------------------CCCc
Q 021925           84 GAQLFTF----NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD----------------------QGGE  137 (305)
Q Consensus        84 ~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~  137 (305)
                      ++.+..+    .+...+.+++|+|++..+++++.     ++.+.+|++......                      ....
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM-----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP  222 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET-----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecC-----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence            9988887    38889999999999999888865     456677776432110                      0011


Q ss_pred             eEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE--------------eeeeccccCCccceEEEEEcCC-
Q 021925          138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--------------LKESDKETGHKKTITSLAKAAD-  202 (305)
Q Consensus       138 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~-  202 (305)
                      .......|...|.+++|+  ++++++++.||.|++||+++++.              +..+.   .|...|++++|+|+ 
T Consensus       223 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~  297 (366)
T 3k26_A          223 DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD---YSQCDIWYMRFSMDF  297 (366)
T ss_dssp             SEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE---CSSCCSSCCCCEECT
T ss_pred             ccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc---ccCCcEEEEEEcCCC
Confidence            233444599999999999  77999999999999999987644              44444   68889999999999 


Q ss_pred             -CCEEEEEeCCCeEEEEEcCCceE----EEEEe-e--CCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          203 -GSHFLTGSLDKSAKLWDARTLEL----IKTYV-T--ERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       203 -~~~l~~~~~dg~i~iwd~~~~~~----~~~~~-~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                       +++|++++.||.|++||++++++    ...+. +  ..+|.+++|+|++++|++|+.|+.     +++|++
T Consensus       298 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-----i~iwd~  364 (366)
T 3k26_A          298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS-----IWRWDR  364 (366)
T ss_dssp             TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-----EEEEEC
T ss_pred             CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE-----EEEEEe
Confidence             99999999999999999998753    33555 3  689999999999999999999997     555543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=253.29  Aligned_cols=249  Identities=15%  Similarity=0.168  Sum_probs=201.4

Q ss_pred             cccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCC---Ce---eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEE
Q 021925            7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN---GE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (305)
Q Consensus         7 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~---~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vw   79 (305)
                      ++|.+.|++++|+| ++++|++|+.||+|++||+.+   +.   ....+ .|.+.|.+++|+|++++|++++.||.|++|
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  138 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL  138 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence            88999999999999 999999999999999999876   43   23333 499999999999999999999999999999


Q ss_pred             ecC---CCCeeEEEe-------------eCCCceEEE--EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE
Q 021925           80 NVE---TGAQLFTFN-------------FDSPARSVD--FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (305)
Q Consensus        80 d~~---~~~~~~~~~-------------~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (305)
                      |++   +++......             ....+.++.  +++++..+++++.     ++.+.+|++.      ..+.+..
T Consensus       139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~------~~~~~~~  207 (437)
T 3gre_A          139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN-----LSRVIIFDIR------TLERLQI  207 (437)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET-----TSEEEEEETT------TCCEEEE
T ss_pred             EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC-----CCeEEEEeCC------CCeeeEE
Confidence            994   555444333             234455555  4467888887765     5667777764      3466777


Q ss_pred             Eec--cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc----CCCCEEEEEeCCCeE
Q 021925          142 LKG--PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA----ADGSHFLTGSLDKSA  215 (305)
Q Consensus       142 ~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~dg~i  215 (305)
                      +..  |...|++++|+|++++|++|+.||.|++||+++++++..+..  .|...|++++|+    |++.+|++++.||.|
T Consensus       208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i  285 (437)
T 3gre_A          208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGKNSVIVVGGSSKTFL  285 (437)
T ss_dssp             EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred             EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--CCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence            777  899999999999999999999999999999999998887642  467799999655    568899999999999


Q ss_pred             EEEEcCCceEEEEEe---------------------------eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          216 KLWDARTLELIKTYV---------------------------TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       216 ~iwd~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      ++||+++++++..+.                           +...|.+++|+ ++++|++|+.|+.     +++|++..
T Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~-----i~~wd~~~  359 (437)
T 3gre_A          286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS-----IVMFSLNE  359 (437)
T ss_dssp             EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE-----EEEEETTC
T ss_pred             EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe-----EEEEECCC
Confidence            999999999888876                           33457888888 7789999999987     67777665


Q ss_pred             hhhhhhc
Q 021925          269 DILFYNL  275 (305)
Q Consensus       269 ~~~~~~~  275 (305)
                      ......+
T Consensus       360 ~~~~~~~  366 (437)
T 3gre_A          360 LSSSKAV  366 (437)
T ss_dssp             GGGCEEE
T ss_pred             cccceEE
Confidence            5544433

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.4e-35  Score=246.05  Aligned_cols=245  Identities=17%  Similarity=0.272  Sum_probs=208.0

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|...|++++|+|+|++||+|+.||.|++||+++++.+..+.+|...+.++.++  +..|++|+.|+.+++||....
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence            456788999999999999999999999999999999999999999999999998875  569999999999999998865


Q ss_pred             Ce-eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC-EE
Q 021925           85 AQ-LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TI  161 (305)
Q Consensus        85 ~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l  161 (305)
                      .. +..+. +...+..+.+.|++..++++..     ++.+.+|+.....  ...........|...|.+++|+|.+. .+
T Consensus       220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~-----D~~v~i~~~~~~~--~~~~~~~~~~~~~~~V~~~~~~p~~~~~l  292 (420)
T 4gga_A          220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGN-----DNLVNVWPSAPGE--GGWVPLQTFTQHQGAVKAVAWCPWQSNVL  292 (420)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEESSCCS--SCSCCSEEECCCSSCEEEEEECTTCTTEE
T ss_pred             ceeeEEecccccceeeeeecCCCCeeeeeec-----cccceEEeecccc--ccceeeeeecccCCceeeeeeCCCcccEE
Confidence            43 34444 7888999999999999988865     4556666654322  22345567788999999999999774 45


Q ss_pred             EE--eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925          162 IS--AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPVN  236 (305)
Q Consensus       162 ~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~-~~~~v~  236 (305)
                      ++  |+.|+.|++||+++++....+.    +...+.++.|+|+++.+++++  .|+.|++||+.+++++.++. |..+|.
T Consensus       293 a~~~gs~D~~I~iwd~~t~~~~~~~~----~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~  368 (420)
T 4gga_A          293 ATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL  368 (420)
T ss_dssp             EEEECTTTCEEEEEETTTTEEEEEEE----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             EEEeecCCCEEEEEeCCccccceeec----cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence            44  4579999999999999988886    567899999999999988765  79999999999999999998 889999


Q ss_pred             EEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      +++|+|+|++|++|+.|+.     +++|++.
T Consensus       369 ~l~~spdg~~l~S~s~D~t-----vriWdv~  394 (420)
T 4gga_A          369 SLTMSPDGATVASAAADET-----LRLWRCF  394 (420)
T ss_dssp             EEEECTTSSCEEEEETTTE-----EEEECCS
T ss_pred             EEEEcCCCCEEEEEecCCe-----EEEEECC
Confidence            9999999999999999998     6666653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-36  Score=251.11  Aligned_cols=243  Identities=14%  Similarity=0.245  Sum_probs=205.3

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC----CeeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEE
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAK   77 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~   77 (305)
                      ++...+|...|++++|+|++++|++|+.||.|++||+.+    .+.+..+.+|.+.|.+++|+|+ +++|++++.||.|+
T Consensus        60 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~  139 (416)
T 2pm9_A           60 PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF  139 (416)
T ss_dssp             CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred             EEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence            344457899999999999999999999999999999987    4578888999999999999998 89999999999999


Q ss_pred             EEecCCCC------eeEEE----eeCCCceEEEEecC-CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-
Q 021925           78 LWNVETGA------QLFTF----NFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-  145 (305)
Q Consensus        78 vwd~~~~~------~~~~~----~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  145 (305)
                      +||+++++      .....    .+...+.+++|+|+ +..+++++.     ++.+.+|++..      .+....+..+ 
T Consensus       140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~------~~~~~~~~~~~  208 (416)
T 2pm9_A          140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS-----SNFASIWDLKA------KKEVIHLSYTS  208 (416)
T ss_dssp             BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS-----SSCEEEEETTT------TEEEEEECCCC
T ss_pred             EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC-----CCCEEEEECCC------CCcceEEeccc
Confidence            99999886      33332    37789999999998 677777665     55677777643      3455666655 


Q ss_pred             -----CCCeeEEEEcCCC-CEEEEeeCCC---cEEEEeCCCC-cEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCe
Q 021925          146 -----QGRINRAVWGPLN-RTIISAGEDA---IVRIWDTETG-KLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKS  214 (305)
Q Consensus       146 -----~~~i~~~~~~~~~-~~l~~~~~dg---~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~  214 (305)
                           ...+.+++|+|++ .++++++.|+   .|++||++++ +++..+.  .+|...|++++|+| ++++|++++.||.
T Consensus       209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~dg~  286 (416)
T 2pm9_A          209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDNT  286 (416)
T ss_dssp             CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESSSE
T ss_pred             cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCCCC
Confidence                 7889999999997 6899999998   9999999986 4444332  15889999999999 9999999999999


Q ss_pred             EEEEEcCCceEEEEEe-eCCCeeEEEecCCC-CcEEEeeCCcEEEE
Q 021925          215 AKLWDARTLELIKTYV-TERPVNAVTMSPLL-DHVCIGEPQTIKFM  258 (305)
Q Consensus       215 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~  258 (305)
                      |++||+++++++..+. |...|.+++|+|++ +++++++.++...+
T Consensus       287 v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~i  332 (416)
T 2pm9_A          287 VLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV  332 (416)
T ss_dssp             EEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEE
T ss_pred             EEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEE
Confidence            9999999999999887 78899999999999 78999998887433

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.9e-37  Score=254.99  Aligned_cols=241  Identities=15%  Similarity=0.206  Sum_probs=195.2

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-----------eeEEecCCC------------cceEEEEEcCCC
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----------RLGTYRGHN------------GAVWCCDVSRDS   64 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-----------~~~~~~~~~------------~~v~~i~~~~~~   64 (305)
                      .|.+.|++++|+|+|++||+|+.||.|+||++.+++           ....+.+|.            +.|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467899999999999999999999999999999876           577888998            889999999998


Q ss_pred             --cEEEEEeCCCcEEEEecCCCCee---------------------------------------EEE--eeCCCceEEEE
Q 021925           65 --MTLITGSADQTAKLWNVETGAQL---------------------------------------FTF--NFDSPARSVDF  101 (305)
Q Consensus        65 --~~l~s~~~dg~v~vwd~~~~~~~---------------------------------------~~~--~~~~~v~~~~~  101 (305)
                        ..|++++.||.|++||+.+++..                                       ..+  .+...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998764432                                       122  27788999999


Q ss_pred             ecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE-------EEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEE
Q 021925          102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-------ILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIW  173 (305)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw  173 (305)
                      +|++..++++.      ++.+.+|++...     .....       .+.+|...|.+++|+|++ ++|++|+.||.|++|
T Consensus       186 ~~~~~~l~s~~------d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  254 (447)
T 3dw8_B          186 NSDYETYLSAD------DLRINLWHLEIT-----DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC  254 (447)
T ss_dssp             CTTSSEEEEEC------SSEEEEEETTEE-----EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             cCCCCEEEEeC------CCeEEEEECCCC-----CceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence            99999999874      455666665421     11111       245889999999999998 999999999999999


Q ss_pred             eCCCCcE----eeeeccccCCcc------------ceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-ceEEEEEeeCCC--
Q 021925          174 DTETGKL----LKESDKETGHKK------------TITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYVTERP--  234 (305)
Q Consensus       174 d~~~~~~----~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~--  234 (305)
                      |+++++.    +..+.   .|..            .|.+++|+|++++|++++. +.|++||+++ ++++..+.....  
T Consensus       255 d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  330 (447)
T 3dw8_B          255 DMRASALCDRHSKLFE---EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR  330 (447)
T ss_dssp             ETTTCSSSCTTCEEEC---CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred             ECcCCccccceeeEec---cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence            9998876    55555   4554            8999999999999999998 9999999997 888887773332  


Q ss_pred             --------------eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          235 --------------VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       235 --------------v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                                    +..++|+|++++|++|+.|+.     +++|+...
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~-----v~iwd~~~  373 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF-----FRMFDRNT  373 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE-----EEEEETTT
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCE-----EEEEEcCC
Confidence                          234999999999999999998     55565543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.9e-35  Score=241.36  Aligned_cols=250  Identities=13%  Similarity=0.138  Sum_probs=208.8

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+.+|...|++++|+|++++|++++.||.|++||+++++....  +..|...|.+++|+|++++|++++.||.|++||++
T Consensus        47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~  126 (372)
T 1k8k_C           47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE  126 (372)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred             eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEec
Confidence            4779999999999999999999999999999999998875444  36789999999999999999999999999999998


Q ss_pred             CCCe---eEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC------------CCCCceEEEEecc
Q 021925           83 TGAQ---LFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA------------DQGGESVLILKGP  145 (305)
Q Consensus        83 ~~~~---~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~  145 (305)
                      +++.   ...+.  +...+.+++|+|++..+++++.     ++.+.+|++.....            ....+....+..|
T Consensus       127 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (372)
T 1k8k_C          127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS  201 (372)
T ss_dssp             TTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET-----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred             CCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC-----CCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence            8874   23332  5788999999999998888765     45677777542111            1235677788899


Q ss_pred             CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC--c
Q 021925          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART--L  223 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~  223 (305)
                      ...+.+++|+|++++|++++.||.|++||+++++.+..+.   .|...+.+++|+|++++|+++ .|+.|++||+++  +
T Consensus       202 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~  277 (372)
T 1k8k_C          202 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA---SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAG  277 (372)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE---CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTT
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc---cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCc
Confidence            9999999999999999999999999999999999988887   788899999999999988877 899999999987  4


Q ss_pred             eE--E------------------------------------EEE--eeCCCeeEEEec-CCC---CcEEEeeCCcEEEEE
Q 021925          224 EL--I------------------------------------KTY--VTERPVNAVTMS-PLL---DHVCIGEPQTIKFML  259 (305)
Q Consensus       224 ~~--~------------------------------------~~~--~~~~~v~~~~~~-~~~---~~l~~~~~~~~~~~~  259 (305)
                      +.  +                                    ..+  .|..+|++++|+ ++|   ++|++|+.|+.    
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~----  353 (372)
T 1k8k_C          278 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG----  353 (372)
T ss_dssp             EEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE----
T ss_pred             eEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc----
Confidence            21  0                                    222  378899999976 666   89999999998    


Q ss_pred             Eeehhhhhh
Q 021925          260 LVYLFVLFL  268 (305)
Q Consensus       260 ~~~~~~~~~  268 (305)
                       +++|++..
T Consensus       354 -i~~W~~~~  361 (372)
T 1k8k_C          354 -MSIWDVRS  361 (372)
T ss_dssp             -EEEEEHHH
T ss_pred             -eEEEEecC
Confidence             67776644

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-37  Score=255.43  Aligned_cols=249  Identities=14%  Similarity=0.166  Sum_probs=206.8

Q ss_pred             EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCe------eeE---EecCCCcceEEEEEcCC-CcEEEEEeCC
Q 021925            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE------RLG---TYRGHNGAVWCCDVSRD-SMTLITGSAD   73 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~------~~~---~~~~~~~~v~~i~~~~~-~~~l~s~~~d   73 (305)
                      .+.+|.+.|++++|+|+ +++|++++.||.|++||+.+++      ...   .+..|...|.+++|+|+ +.+|++++.|
T Consensus       108 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  187 (416)
T 2pm9_A          108 RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS  187 (416)
T ss_dssp             ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS
T ss_pred             hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC
Confidence            47789999999999998 8999999999999999999876      333   33679999999999998 7899999999


Q ss_pred             CcEEEEecCCCCeeEEEee-------CCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-c
Q 021925           74 QTAKLWNVETGAQLFTFNF-------DSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-G  144 (305)
Q Consensus        74 g~v~vwd~~~~~~~~~~~~-------~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  144 (305)
                      |.|++||+++++.+..+..       ...+.+++|+|++ .+++++....  ....+.+|++...     ......+. +
T Consensus       188 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~~~~i~~~d~~~~-----~~~~~~~~~~  260 (416)
T 2pm9_A          188 NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD--NDPSILIWDLRNA-----NTPLQTLNQG  260 (416)
T ss_dssp             SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS--SSCCCCEEETTST-----TSCSBCCCSC
T ss_pred             CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC--CCceEEEEeCCCC-----CCCcEEeecC
Confidence            9999999999998888874       6789999999997 4666665421  0115666766432     13445566 8


Q ss_pred             cCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCC
Q 021925          145 PQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       145 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~  222 (305)
                      |...|.+++|+| ++++|++++.||.|++||+++++.+..+.   .|...|++++|+|++ .+|++++.||.|++||+.+
T Consensus       261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP---ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE---CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec---CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            999999999999 89999999999999999999999988887   789999999999998 8999999999999999987


Q ss_pred             ceEEEEE---------------e---------------------eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          223 LELIKTY---------------V---------------------TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       223 ~~~~~~~---------------~---------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                      ++.....               .                     +..++.+++|+|+|++|++++.++.     +++|++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~-----v~~w~~  412 (416)
T 2pm9_A          338 LTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKG-----VSITNP  412 (416)
T ss_dssp             CCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSC-----BCCBCC
T ss_pred             CCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCe-----EEEEEe
Confidence            6532211               0                     3456789999999999999998887     788876


Q ss_pred             hh
Q 021925          267 FL  268 (305)
Q Consensus       267 ~~  268 (305)
                      ..
T Consensus       413 ~~  414 (416)
T 2pm9_A          413 KI  414 (416)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.8e-35  Score=245.11  Aligned_cols=245  Identities=21%  Similarity=0.363  Sum_probs=209.2

Q ss_pred             eEecccccce-EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            4 ILMKGHERPL-TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         4 ~~l~~h~~~v-~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      ..+.+|.+.| .++.+  ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ .|++|+.||+|++||++
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence            3688998885 66665  56799999999999999999999999999999999999999988 99999999999999999


Q ss_pred             CCCeeEEEe-eCCCceEEEEec--CCceEEEeCCcceeeeeeEEEEEeecccCCC-----------------CCceEEEE
Q 021925           83 TGAQLFTFN-FDSPARSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQ-----------------GGESVLIL  142 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~  142 (305)
                      +++.+..+. +...+.++++.+  ++..+++++.     ++.+.+|++.......                 .......+
T Consensus       192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR-----DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEET-----TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcC-----CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            999888887 889999999995  6677777765     5567777765432211                 11135677


Q ss_pred             eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      .+|...+.++  +++++++++++.||.|++||+++++.+..+.   +|...|.+++|+|+++.|++|+.||.|++||+++
T Consensus       267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            8888888877  5778999999999999999999999988887   7999999999999999999999999999999999


Q ss_pred             ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          223 LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       223 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      ++++..+. |...|.+++|+  ++++++|+.|+.     +++|+...
T Consensus       342 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-----v~vwd~~~  381 (464)
T 3v7d_B          342 GELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-----IRGWDAND  381 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-----EEEEETTT
T ss_pred             CcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-----EEEEECCC
Confidence            99999987 88899999998  478999999998     55555543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7.6e-36  Score=247.74  Aligned_cols=238  Identities=20%  Similarity=0.242  Sum_probs=194.8

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||++++
T Consensus       134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG  213 (420)
T ss_dssp             ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEee----C---------------------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceE
Q 021925           85 AQLFTFNF----D---------------------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV  139 (305)
Q Consensus        85 ~~~~~~~~----~---------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (305)
                      +.+..+..    .                     ..+.+++|+|++..++++..     ++.+.+|++..      .+..
T Consensus       214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~------~~~~  282 (420)
T 3vl1_A          214 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-----SGVITVHNVFS------KEQT  282 (420)
T ss_dssp             EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-----TSCEEEEETTT------CCEE
T ss_pred             ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-----CCeEEEEECCC------Ccee
Confidence            88888762    2                     44555566788888888765     55677777642      2333


Q ss_pred             E-EEeccCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCcE-eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925          140 L-ILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (305)
Q Consensus       140 ~-~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  216 (305)
                      . ....|...|.+++|+|+++ +|++|+.||.|++||+++++. +..+..  .|...++++.+ +++++|++++.||.|+
T Consensus       283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~-~~~~~l~s~~~d~~v~  359 (420)
T 3vl1_A          283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI--NEGTPINNVYF-AAGALFVSSGFDTSIK  359 (420)
T ss_dssp             EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE--STTSCEEEEEE-ETTEEEEEETTTEEEE
T ss_pred             EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc--cCCCCceEEEe-CCCCEEEEecCCccEE
Confidence            3 3456889999999999998 999999999999999998754 555541  26678888865 5788999999999999


Q ss_pred             EEEcCCc----------eEEEEEeeCCCeeEEEecCCCC---cEEEeeCCcEE
Q 021925          217 LWDARTL----------ELIKTYVTERPVNAVTMSPLLD---HVCIGEPQTIK  256 (305)
Q Consensus       217 iwd~~~~----------~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~~~~  256 (305)
                      +||+...          .......+...|.+++|+|+++   .+++++.++..
T Consensus       360 iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~  412 (420)
T 3vl1_A          360 LDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFC  412 (420)
T ss_dssp             EEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEE
T ss_pred             EEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceE
Confidence            9998863          1222223777899999999999   66666667763

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.9e-36  Score=241.91  Aligned_cols=239  Identities=15%  Similarity=0.240  Sum_probs=198.0

Q ss_pred             ecccccceEEEEEcCC---CCEEEEeeCCCceEEEEcCCCe-eeEEecCCCcceEEEEE------cCCCcEEEEEeCCCc
Q 021925            6 MKGHERPLTYLKYNKD---GDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDV------SRDSMTLITGSADQT   75 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~---~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~i~~------~~~~~~l~s~~~dg~   75 (305)
                      ..+|..+|++++|+|+   +++|++|+.||.|++||+.+++ .+..+.+|...|.+++|      +|++++|++++.||.
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            4489999999999998   6999999999999999999888 88899999999999954      688999999999999


Q ss_pred             EEEEecCCCC-eeEEEee-----CCCceEEE----EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925           76 AKLWNVETGA-QLFTFNF-----DSPARSVD----FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (305)
Q Consensus        76 v~vwd~~~~~-~~~~~~~-----~~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (305)
                      |++||+++++ .+..+..     ...+.+++    |+|++..++++..     ++.+.+|++..       ........|
T Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~-------~~~~~~~~~  208 (357)
T 3i2n_A          141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD-----NGDIKLFDLRN-------MALRWETNI  208 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET-----TSEEEEEETTT-------TEEEEEEEC
T ss_pred             EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc-----CCeEEEEECcc-------CceeeecCC
Confidence            9999999887 6666652     33788888    6789998888865     45666776643       223445778


Q ss_pred             CCCeeEEEEcC---CCCEEEEeeCCCcEEEEeCCCCcEeeeec--cccCCccceEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 021925          146 QGRINRAVWGP---LNRTIISAGEDAIVRIWDTETGKLLKESD--KETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWD  219 (305)
Q Consensus       146 ~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd  219 (305)
                      ...+.+++|+|   +++++++++.||.|++||+++++....+.  ...+|...|++++|+|+++ +|++++.||.|++||
T Consensus       209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  288 (357)
T 3i2n_A          209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK  288 (357)
T ss_dssp             SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred             CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence            89999999999   89999999999999999998766544432  2226889999999999998 899999999999999


Q ss_pred             cCCc-------------------eEEEEEe-eCCCeeEEEecCCCCcEE-EeeCCcEE
Q 021925          220 ARTL-------------------ELIKTYV-TERPVNAVTMSPLLDHVC-IGEPQTIK  256 (305)
Q Consensus       220 ~~~~-------------------~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~~~~~  256 (305)
                      ++++                   +++..+. |..+|.+++|+|++++|+ +++.|+..
T Consensus       289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i  346 (357)
T 3i2n_A          289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV  346 (357)
T ss_dssp             EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence            9854                   3455555 888999999999999998 68888873

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=9.5e-36  Score=247.79  Aligned_cols=248  Identities=14%  Similarity=0.230  Sum_probs=204.1

Q ss_pred             eEecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCC----------CeeeEEecCCCcceEEEEEcCCCc-EEEEEe
Q 021925            4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADN----------GERLGTYRGHNGAVWCCDVSRDSM-TLITGS   71 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~----------~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~   71 (305)
                      ....+|.+.|++++|+|+ +.+||+++.||.|++|++.+          .+.+..+.+|...|.+++|+|+++ +|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            446789999999999997 78999999999999999986          577788899999999999999988 999999


Q ss_pred             CCCcEEEEecCCCCe-------eEEE-eeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925           72 ADQTAKLWNVETGAQ-------LFTF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (305)
Q Consensus        72 ~dg~v~vwd~~~~~~-------~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (305)
                      .||.|++||+.++..       ...+ .+...+.+++|+| ++.++++++.     ++.+.+|++....   ..+....+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~-----dg~i~i~d~~~~~---~~~~~~~~  273 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD-----DQKLMIWDTRNNN---TSKPSHTV  273 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET-----TSEEEEEETTCSC---SSSCSEEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC-----CCeEEEEECCCCC---CCcceeEe
Confidence            999999999987432       2333 3778899999999 5667766654     5667777775321   12456677


Q ss_pred             eccCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 021925          143 KGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWD  219 (305)
Q Consensus       143 ~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd  219 (305)
                      ..|...|++++|+|+++ ++++|+.||.|++||+++ ++++..+.   .|...|++++|+|+++ +|++++.||.|++||
T Consensus       274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~---~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE---SHKDEIFQVQWSPHNETILASSGTDRRLHVWD  350 (430)
T ss_dssp             ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE---CCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred             ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee---cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence            89999999999999987 688999999999999998 45566665   6899999999999985 689999999999999


Q ss_pred             cCC--------------ceEEEEEe-eCCCeeEEEecCCCC-cEEEeeCCcEEEEEEeehhhhh
Q 021925          220 ART--------------LELIKTYV-TERPVNAVTMSPLLD-HVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       220 ~~~--------------~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      ++.              .+.+..+. |...|.+++|+|+++ ++++++.++.     +.+|++.
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~-----i~iw~~~  409 (430)
T 2xyi_A          351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI-----MQVWQMA  409 (430)
T ss_dssp             GGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE-----EEEEEEC
T ss_pred             CCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC-----EEEeEcc
Confidence            987              24555554 677899999999999 7788888887     5555543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-35  Score=245.97  Aligned_cols=235  Identities=17%  Similarity=0.270  Sum_probs=207.7

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcc---------------eEEEEEcCCCcEEEE
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA---------------VWCCDVSRDSMTLIT   69 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~---------------v~~i~~~~~~~~l~s   69 (305)
                      .+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...               +.+++|+|++ .+++
T Consensus       144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  222 (425)
T 1r5m_A          144 VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVI  222 (425)
T ss_dssp             EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEE
T ss_pred             eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEE
Confidence            47789999999999999999999999999999999999999999888776               9999999976 5888


Q ss_pred             EeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC
Q 021925           70 GSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR  148 (305)
Q Consensus        70 ~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (305)
                      ++.||.|++||+++++.+..+. +...+.+++|+|++..+++++.     ++.+.+|++..      .+....+..|...
T Consensus       223 ~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~------~~~~~~~~~~~~~  291 (425)
T 1r5m_A          223 PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-----DGTLRIWHGGN------GNSQNCFYGHSQS  291 (425)
T ss_dssp             ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-----TSCEEEECSSS------BSCSEEECCCSSC
T ss_pred             EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-----CCEEEEEECCC------CccceEecCCCcc
Confidence            9999999999999998888776 7889999999999998888764     45566666532      3556777889999


Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce----
Q 021925          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE----  224 (305)
Q Consensus       149 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----  224 (305)
                      +.+++|+|++ ++++++.||.|++||+++++.+..+.   .|...+.+++|+|++++|++++.||.|++||+++++    
T Consensus       292 i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~  367 (425)
T 1r5m_A          292 IVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI---VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR  367 (425)
T ss_dssp             EEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE---CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred             EEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc---cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence            9999999999 99999999999999999999888887   688999999999999999999999999999999888    


Q ss_pred             ----------------EEEEEe-eCC--CeeEEEecCCCCcEEEeeCCcE
Q 021925          225 ----------------LIKTYV-TER--PVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       225 ----------------~~~~~~-~~~--~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                                      ++..+. +..  .|.+++|+|++++|++++.++.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  417 (425)
T 1r5m_A          368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQE  417 (425)
T ss_dssp             -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSC
T ss_pred             eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCce
Confidence                            778777 444  8999999999999999999987

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.4e-36  Score=248.17  Aligned_cols=239  Identities=12%  Similarity=0.129  Sum_probs=203.4

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE-e
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-N   91 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~   91 (305)
                      +++++|+|+|++|++++.||.|++||..+++....+..| ..+....|+|++++|++++.||.|++||+++++....+ .
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  137 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA  137 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence            458999999999999999999999999988777667666 45566678999999999999999999999988887776 4


Q ss_pred             eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (305)
Q Consensus        92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  171 (305)
                      +...+.+++|+|++..+++++.     ++.+.+|++.      ..+....+.+|...|.+++|+|++++|++++.||.|+
T Consensus       138 h~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~  206 (420)
T 3vl1_A          138 HVSEITKLKFFPSGEALISSSQ-----DMQLKIWSVK------DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR  206 (420)
T ss_dssp             SSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT------TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ccCccEEEEECCCCCEEEEEeC-----CCeEEEEeCC------CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            8899999999999998888765     5667777764      3456677889999999999999999999999999999


Q ss_pred             EEeCCCCcEeeeeccccCCccceEEE---------------------EEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          172 IWDTETGKLLKESDKETGHKKTITSL---------------------AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       172 iwd~~~~~~~~~~~~~~~~~~~v~~~---------------------~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      +||+++++.+..+.....+...+.++                     +|+|++++|++++.||.|++||+++++.+..+.
T Consensus       207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence            99999999988887544444455554                     457899999999999999999999998887776


Q ss_pred             --eCCCeeEEEecCCCC-cEEEeeCCcEEEEEEeehhhhhh
Q 021925          231 --TERPVNAVTMSPLLD-HVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       231 --~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                        +...|.+++|+|+++ +|++|+.++.     +++|++..
T Consensus       287 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~-----i~vwd~~~  322 (420)
T 3vl1_A          287 SKFTCSCNSLTVDGNNANYIYAGYENGM-----LAQWDLRS  322 (420)
T ss_dssp             CTTSSCEEEEEECSSCTTEEEEEETTSE-----EEEEETTC
T ss_pred             cccCCCceeEEEeCCCCCEEEEEeCCCe-----EEEEEcCC
Confidence              678899999999999 8999999987     55665543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.6e-35  Score=237.86  Aligned_cols=253  Identities=13%  Similarity=0.069  Sum_probs=201.3

Q ss_pred             CCceE-ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe---eeEEecCCCcceEEEEEcCCCc-EEEEEeCCCc
Q 021925            1 MRPIL-MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSM-TLITGSADQT   75 (305)
Q Consensus         1 ~~~~~-l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~   75 (305)
                      |+.+. ..+|.+.|++++|+|++++|++++.||.|++|++.+++   ....+.+|...|.+++|+|+++ +|++++.||.
T Consensus         1 m~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   80 (342)
T 1yfq_A            1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             CcceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe
Confidence            45555 46899999999999999999999999999999998876   3455567999999999999999 9999999999


Q ss_pred             EEEEec-CCCCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC---CCceEEEEeccCCCe
Q 021925           76 AKLWNV-ETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ---GGESVLILKGPQGRI  149 (305)
Q Consensus        76 v~vwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i  149 (305)
                      |++||+ ++++......  +...+.+++|+| +..+++++.     ++.+.+|++.......   ..+.+..+. |...+
T Consensus        81 i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v  153 (342)
T 1yfq_A           81 ILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASW-----DGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKI  153 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEET-----TSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCE
T ss_pred             EEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcC-----CCeEEEEcccccccccccccCCeeeEEe-eCCce
Confidence            999999 8887655445  788999999999 777777664     4566677665310000   011122223 78899


Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc----
Q 021925          150 NRAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTL----  223 (305)
Q Consensus       150 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~----  223 (305)
                      .+++|+|++  +++++.|+.|++||+++ +....... ...+...+.+++|+| +++++++++.||.|++|+++..    
T Consensus       154 ~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~  230 (342)
T 1yfq_A          154 FTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY  230 (342)
T ss_dssp             EEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred             EEEEecCCc--EEEEeCCCeEEEEECCccccccceee-ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc
Confidence            999999987  99999999999999998 54321111 125788999999999 9999999999999999999876    


Q ss_pred             --eEEEEEe-eCC---------CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          224 --ELIKTYV-TER---------PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       224 --~~~~~~~-~~~---------~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                        +....+. +..         +|.+++|+|++++|++|+.++.     +++|+...
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~vwd~~~  282 (342)
T 1yfq_A          231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-----ISCWNLQT  282 (342)
T ss_dssp             TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-----EEEEETTT
T ss_pred             ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-----EEEEcCcc
Confidence              6667776 433         8999999999999999999987     55555543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.5e-34  Score=241.63  Aligned_cols=243  Identities=24%  Similarity=0.391  Sum_probs=207.4

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEc--CCCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+.+|.+.|++++|+|++ .+++|+.||+|++||+++++.+..+.+|.+.|.+++|+  ++++++++++.||.|++||++
T Consensus       157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~  235 (464)
T 3v7d_B          157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP  235 (464)
T ss_dssp             EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred             EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence            477999999999999988 99999999999999999999999999999999999998  577899999999999999998


Q ss_pred             CCCeeEE-----------------------Ee-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCce
Q 021925           83 TGAQLFT-----------------------FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES  138 (305)
Q Consensus        83 ~~~~~~~-----------------------~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (305)
                      +++....                       .. +...+.+  +++++..+++++.     ++.+.+|++.      ..+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~-----d~~i~vwd~~------~~~~  302 (464)
T 3v7d_B          236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSY-----DNTLIVWDVA------QMKC  302 (464)
T ss_dssp             CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE--EEEETTEEEEEET-----TSCEEEEETT------TTEE
T ss_pred             CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE--EcCCCCEEEEEeC-----CCeEEEEECC------CCcE
Confidence            7764322                       11 3334444  4677778877765     5567777763      3567


Q ss_pred             EEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925          139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW  218 (305)
Q Consensus       139 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  218 (305)
                      +..+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+.   +|...|.+++|+  +++|++++.||.|++|
T Consensus       303 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~--~~~l~s~s~dg~v~vw  377 (464)
T 3v7d_B          303 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ---GHTALVGLLRLS--DKFLVSAAADGSIRGW  377 (464)
T ss_dssp             EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCcEEEEEEc--CCEEEEEeCCCcEEEE
Confidence            78889999999999999999999999999999999999999998887   799999999997  5799999999999999


Q ss_pred             EcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          219 DARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       219 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      |+++++......+...+..++|+|+++++++|+ ++.     +++|+.......
T Consensus       378 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~-----i~iwd~~~g~~~  425 (464)
T 3v7d_B          378 DANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQ-----FNIYNLRSGKLV  425 (464)
T ss_dssp             ETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTE-----EEEEETTTCCEE
T ss_pred             ECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCe-----EEEEECCCCcEE
Confidence            999998888888888899999999999999988 555     677776555444

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-36  Score=247.43  Aligned_cols=207  Identities=14%  Similarity=0.130  Sum_probs=165.2

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe---eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      .+.+|.+.|++++|+|++++|++++.||.|++||+.+++   ....+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  129 (377)
T 3dwl_C           50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYF  129 (377)
T ss_dssp             CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC
T ss_pred             EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEE
Confidence            477999999999999999999999999999999999877   66778889999999999999999999999999999999


Q ss_pred             CCCCe---eEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC------------CCceEEEEec
Q 021925           82 ETGAQ---LFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ------------GGESVLILKG  144 (305)
Q Consensus        82 ~~~~~---~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~  144 (305)
                      ++++.   ...+.  +...+.+++|+|++..+++++.     ++.+.+|++.......            ..+....+ +
T Consensus       130 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  203 (377)
T 3dwl_C          130 EQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA-----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P  203 (377)
T ss_dssp             -----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES-----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C
T ss_pred             CCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC-----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-c
Confidence            98873   55555  6889999999999999888765     5667778774221111            12344445 8


Q ss_pred             cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE----eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL----LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      |...|.+++|+|++++|++++.||.|++||+++++.    +..+.   +|...|.+++|+|++++|++++.++.+ +|+.
T Consensus       204 ~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          204 SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK---LSQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE---CSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec---CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence            999999999999999999999999999999999876    55555   789999999999999999998876655 6665


Q ss_pred             C
Q 021925          221 R  221 (305)
Q Consensus       221 ~  221 (305)
                      .
T Consensus       280 ~  280 (377)
T 3dwl_C          280 N  280 (377)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3e-35  Score=242.84  Aligned_cols=233  Identities=18%  Similarity=0.269  Sum_probs=197.0

Q ss_pred             EecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCc
Q 021925            5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQT   75 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~   75 (305)
                      .+.+|.+.|++++|+| ++++|++|+.||.|++||+.++       +.+..+.+|...|.+++|+|++ ++|++++.||.
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence            4679999999999999 9999999999999999999987       6678889999999999999998 69999999999


Q ss_pred             EEEEecCCCCeeEEE--e-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCC-ee
Q 021925           76 AKLWNVETGAQLFTF--N-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGR-IN  150 (305)
Q Consensus        76 v~vwd~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-i~  150 (305)
                      |++||+++++.+..+  . +...+.+++|+|++..+++++.     ++.+.+|++..      .+.+..+ ..|.+. +.
T Consensus       156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~------~~~~~~~~~~~~~~~~~  224 (402)
T 2aq5_A          156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR-----DKRVRVIEPRK------GTVVAEKDRPHEGTRPV  224 (402)
T ss_dssp             EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET-----TSEEEEEETTT------TEEEEEEECSSCSSSCC
T ss_pred             EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec-----CCcEEEEeCCC------CceeeeeccCCCCCcce
Confidence            999999999998888  3 7889999999999999888865     55677777642      4556666 678776 89


Q ss_pred             EEEEcCCCCEEEEe---eCCCcEEEEeCCCCcE-eeeeccccCCccceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCceE
Q 021925          151 RAVWGPLNRTIISA---GEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLEL  225 (305)
Q Consensus       151 ~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~  225 (305)
                      ++.|+|+++++++|   +.|+.|++||+++++. +....  ..+...+.+++|+|++++|++ |+.||.|++||+.++++
T Consensus       225 ~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          225 HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE--LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE--CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             EEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe--ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            99999999999999   7899999999998654 22221  146778999999999999864 55799999999998873


Q ss_pred             -EEE---EeeCCCeeEEEecCCCCcEEEe
Q 021925          226 -IKT---YVTERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       226 -~~~---~~~~~~v~~~~~~~~~~~l~~~  250 (305)
                       +..   +.+..++.+++|+|++.+++++
T Consensus       303 ~~~~l~~~~~~~~v~~~~~sp~~~~~~s~  331 (402)
T 2aq5_A          303 FLHYLSMFSSKESQRGMGYMPKRGLEVNK  331 (402)
T ss_dssp             CEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred             ceEeecccccCCcccceEEecccccceec
Confidence             333   3356899999999999887654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.7e-35  Score=239.26  Aligned_cols=242  Identities=13%  Similarity=0.183  Sum_probs=194.4

Q ss_pred             cccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecC---CCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRG---HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         7 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+|.+.|.+++|+| ++++|++++.|+.|++||+.+ +.+..+..   |...|.+++|+|++++|++++.||.|++||++
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  193 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD  193 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC
Confidence            47999999999999 789999999999999999986 54555544   44789999999999999999999999999994


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC-CCC
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNR  159 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  159 (305)
                       ++.+..+. +...+.+++|+|++. ++++++.     ++.+.+|++.....  .......+ +|...|.+++|+| +++
T Consensus       194 -~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~--~~~~~~~~-~~~~~v~~~~~s~~~~~  264 (383)
T 3ei3_B          194 -GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSV-----DATVKLWDLRNIKD--KNSYIAEM-PHEKPVNAAYFNPTDST  264 (383)
T ss_dssp             -SCEEEEEECSSSCEEEEEECSSCTTEEEEEET-----TSEEEEEEGGGCCS--TTCEEEEE-ECSSCEEEEEECTTTSC
T ss_pred             -CCEEEEeccCCCcEEEEEECCCCCCEEEEEeC-----CCEEEEEeCCCCCc--ccceEEEe-cCCCceEEEEEcCCCCC
Confidence             66666666 788999999999998 7777654     56777888765321  12344444 7999999999999 999


Q ss_pred             EEEEeeCCCcEEEEeCCCCcEeeeecccc----CCc----------cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE
Q 021925          160 TIISAGEDAIVRIWDTETGKLLKESDKET----GHK----------KTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  225 (305)
                      +|++++.|+.|++||+++++....+....    .|.          ..+..++++|++++  +++.||.|++||++++++
T Consensus       265 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~  342 (383)
T 3ei3_B          265 KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL  342 (383)
T ss_dssp             EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred             EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce
Confidence            99999999999999999887665554110    112          34555777777776  778999999999999999


Q ss_pred             EEEEe---eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          226 IKTYV---TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       226 ~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                      +..+.   +...+.+++|+|++++|++|+ |+.     +++|++
T Consensus       343 ~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~-----i~iw~~  380 (383)
T 3ei3_B          343 VHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN-----ILIWNR  380 (383)
T ss_dssp             EEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE-----EEEEEC
T ss_pred             eeeecCCCCCceEEEEEEecCccEEEEec-CCc-----EEEEec
Confidence            99887   456677789999999999997 665     556654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-34  Score=235.01  Aligned_cols=201  Identities=20%  Similarity=0.412  Sum_probs=179.0

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+.+|.+.|.+++|+|+++.|++++.||+|++||+++++.+..+.+|...|.+++|+|  ++++|++|+.||+|++||++
T Consensus       149 ~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~  228 (354)
T 2pbi_B          149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR  228 (354)
T ss_dssp             EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            4678999999999999999999999999999999999999999999999999999988  56899999999999999999


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec--cCCCeeEEEEcCCCC
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG--PQGRINRAVWGPLNR  159 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~  159 (305)
                      +++++..+. +...+.+++|+|++..+++++.     ++.+.+|++...      .....+..  +...+.+++|+|+++
T Consensus       229 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-----D~~v~lwd~~~~------~~~~~~~~~~~~~~~~~~~~s~~g~  297 (354)
T 2pbi_B          229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSD-----DATCRLYDLRAD------REVAIYSKESIIFGASSVDFSLSGR  297 (354)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTTT------EEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC-----CCeEEEEECCCC------cEEEEEcCCCcccceeEEEEeCCCC
Confidence            999988887 7889999999999999988875     566777776432      23333332  334788999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  219 (305)
                      +|++|+.|+.|++||+.+++.+..+.   +|...|++++|+|++++|++|+.||+|++|+
T Consensus       298 ~l~~g~~d~~i~vwd~~~~~~~~~l~---~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          298 LLFAGYNDYTINVWDVLKGSRVSILF---GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEEC---CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEEECCCcEEEEECCCCceEEEEE---CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999888876   8999999999999999999999999999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-36  Score=251.44  Aligned_cols=244  Identities=12%  Similarity=0.015  Sum_probs=192.4

Q ss_pred             EecccccceEEEEEcCC------CCEEEEeeCCCceEEEEcCCCee-----------eEEecCCCcceEEEEEcCCCcEE
Q 021925            5 LMKGHERPLTYLKYNKD------GDLLFSCAKDHTPTVWFADNGER-----------LGTYRGHNGAVWCCDVSRDSMTL   67 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~------~~~l~s~~~dg~v~iw~~~~~~~-----------~~~~~~~~~~v~~i~~~~~~~~l   67 (305)
                      .+.+|.+.|.+++|+|+      +.+||+++.||+|++||+.+++.           ...+.+|...|.+++|++++ .|
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l  280 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV  280 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence            35678899999999996      57999999999999999986632           24678899999999999864 89


Q ss_pred             EEEeCCCcEEEEecCCCC-eeEEEe-eCCCceEE--EEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925           68 ITGSADQTAKLWNVETGA-QLFTFN-FDSPARSV--DFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (305)
Q Consensus        68 ~s~~~dg~v~vwd~~~~~-~~~~~~-~~~~v~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (305)
                      ++|+.||+|++||+++++ ....+. +...|.++  .+++++ .++++++.     ++.+++|++...      +....+
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~-----D~tvklWD~~~~------~~~~~~  349 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV-----DGYFYIFNPKDI------ATTKTT  349 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET-----TSEEEEECGGGH------HHHCEE
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc-----CCeEEEEECCCC------Cccccc
Confidence            999999999999998764 344444 78899999  567777 77777764     677888887532      233344


Q ss_pred             eccCC--CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          143 KGPQG--RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       143 ~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      .+|..  .+.+++|+|+++.+++++.|+.|++||++++.++..+.   +|...|++++|+|++++|++|+.||+|++||+
T Consensus       350 ~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~---gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          350 VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV---SRETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE---ECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee---cCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            55543  58899999999999999999999999999988877776   79999999999999999999999999999985


Q ss_pred             CCc--------------------------------------------eEEEEEe-eCCCeeEEEecCCCC---cEEEeeC
Q 021925          221 RTL--------------------------------------------ELIKTYV-TERPVNAVTMSPLLD---HVCIGEP  252 (305)
Q Consensus       221 ~~~--------------------------------------------~~~~~~~-~~~~v~~~~~~~~~~---~l~~~~~  252 (305)
                      ...                                            .++..+. |..+|.+++|+|+++   .+++|+.
T Consensus       427 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~  506 (524)
T 2j04_B          427 ARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS  506 (524)
T ss_dssp             CSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT
T ss_pred             hHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc
Confidence            321                                            0111111 556789999999965   7888888


Q ss_pred             CcEEEEEEeehhhhhh
Q 021925          253 QTIKFMLLVYLFVLFL  268 (305)
Q Consensus       253 ~~~~~~~~~~~~~~~~  268 (305)
                      ++.     +++|.+..
T Consensus       507 ~g~-----vrlw~l~~  517 (524)
T 2j04_B          507 AGL-----LTLEYLSL  517 (524)
T ss_dssp             TSE-----EEEEECSC
T ss_pred             Cce-----EEEEEccc
Confidence            887     66666543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-36  Score=254.67  Aligned_cols=241  Identities=12%  Similarity=0.073  Sum_probs=190.8

Q ss_pred             ccccceEEEEEcCCC---------CEEEE-------------------eeCCCceEEEEcCCCeee----EEecCCCcce
Q 021925            8 GHERPLTYLKYNKDG---------DLLFS-------------------CAKDHTPTVWFADNGERL----GTYRGHNGAV   55 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~---------~~l~s-------------------~~~dg~v~iw~~~~~~~~----~~~~~~~~~v   55 (305)
                      .+.+.|.+|+|+|++         ++||+                   ++.|++|+||++.+++..    ..+..|.+.|
T Consensus       131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V  210 (524)
T 2j04_B          131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV  210 (524)
T ss_dssp             ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSE
T ss_pred             ECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE
Confidence            367788899998876         56666                   457889999999877642    3466788999


Q ss_pred             EEEEEcCC------CcEEEEEeCCCcEEEEecCCCCee-----------EEEe-eCCCceEEEEecCCceEEEeCCccee
Q 021925           56 WCCDVSRD------SMTLITGSADQTAKLWNVETGAQL-----------FTFN-FDSPARSVDFAVGDKLAVITTDPFME  117 (305)
Q Consensus        56 ~~i~~~~~------~~~l~s~~~dg~v~vwd~~~~~~~-----------~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~  117 (305)
                      .+++|+|+      +.+||+++.||+|++||+.+++..           ..+. +...+.+++|++++ .+++++.    
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~----  285 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFK----  285 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEET----
T ss_pred             EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeC----
Confidence            99999996      579999999999999999876421           2333 66889999999876 4555543    


Q ss_pred             eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE--EEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCc--c
Q 021925          118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRA--VWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHK--K  192 (305)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~  192 (305)
                       ++.+.+|++...     ..+...+.+|...|.++  +|+|++ ++|++++.|++|++||+++++.+..+.   +|.  .
T Consensus       286 -DgtV~lWD~~~~-----~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~---~~~~~~  356 (524)
T 2j04_B          286 -NGFVAEFDLTDP-----EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV---SRFRGS  356 (524)
T ss_dssp             -TSEEEEEETTBC-----SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE---EECSCC
T ss_pred             -CCEEEEEECCCC-----CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc---cccccC
Confidence             567788887532     23456688999999999  578887 899999999999999999887766554   343  3


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      .|.+++|+|+++.+++++.|++|++||++++.++..+. |...|++++|+|+++.|++|+.|+.     +++|+..
T Consensus       357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-----v~lwd~~  427 (524)
T 2j04_B          357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-----LIITNAA  427 (524)
T ss_dssp             SCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-----EECCBSC
T ss_pred             cccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-----EEEEech
Confidence            47899999999999999999999999999998877666 8899999999999999999999998     6667653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.1e-35  Score=238.56  Aligned_cols=208  Identities=9%  Similarity=0.006  Sum_probs=166.6

Q ss_pred             ccccceEEEEEcCCCCEEEE--eeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925            8 GHERPLTYLKYNKDGDLLFS--CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      .+...+.+++|||||+++++  ++.|++|+|||+++++.+..+. |.+.|.+++|+|||++|++++.+ .+.+|+..+++
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence            34556899999999998765  4478999999999999998887 78889999999999999998854 57777777777


Q ss_pred             eeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           86 QLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        86 ~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      .+....   +...+.+++|+|++..+++++..... ...+..|+.....  ........+.+|...|++++|+|+|++||
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~-~~~i~~~~~~~~~--~~~~~~~~~~~~~~~V~~~~~Spdg~~la  285 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK-GIVLTKISIKSGN--TSVLRSKQVTNRFKGITSMDVDMKGELAV  285 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC-CEEEEEEEEETTE--EEEEEEEEEESSCSCEEEEEECTTSCEEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc-eeEEeecccccce--ecceeeeeecCCCCCeEeEEECCCCCceE
Confidence            665433   55678999999999998887542210 0123333332211  11123456788999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      +|+.|+.|+|||+++++++..+.  .+|...|++++|+|||++|++||.|++|+|||+..
T Consensus       286 sgs~D~~V~iwd~~~~~~~~~~~--~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          286 LASNDNSIALVKLKDLSMSKIFK--QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEETTSCEEEEETTTTEEEEEET--TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEcCCCEEEEEECCCCcEEEEec--CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999999999888753  27999999999999999999999999999999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-35  Score=242.11  Aligned_cols=247  Identities=15%  Similarity=0.272  Sum_probs=204.4

Q ss_pred             eEecccccceEEEEEcCC----CCEEEEeeCCCceEEEEcCCCeeeEEecC-----CCcceEEEEEcCC----CcEEEEE
Q 021925            4 ILMKGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRG-----HNGAVWCCDVSRD----SMTLITG   70 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-----~~~~v~~i~~~~~----~~~l~s~   70 (305)
                      ....+|.++|++++|+|+    ...+++++.++.|++||+.+++.+..+..     |...|.+++|+|+    +++|+++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            345689999999999984    45666677788999999998877666653     6678999999998    6799999


Q ss_pred             eCCCcEEEEecCCCCeeEEEe-eCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE---ecc
Q 021925           71 SADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGP  145 (305)
Q Consensus        71 ~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  145 (305)
                      +.||.|++||+++++.+..+. +...+.+++|+| ++..+++++.     ++.+.+|++.      ..+....+   .+|
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~------~~~~~~~~~~~~~~  160 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK-----DHALRLWNIQ------TDTLVAIFGGVEGH  160 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET-----TSCEEEEETT------TTEEEEEECSTTSC
T ss_pred             cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC-----CCeEEEEEee------cCeEEEEecccccc
Confidence            999999999999999998888 889999999999 8888888765     5567777764      23555666   689


Q ss_pred             CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec-------------------------cccCCccceEEEEEc
Q 021925          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD-------------------------KETGHKKTITSLAKA  200 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~~  200 (305)
                      ...|.+++|+|++++|++++.||.|++||+++++....+.                         ....|...|.+++|+
T Consensus       161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (366)
T 3k26_A          161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL  240 (366)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred             cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence            9999999999999999999999999999999876544332                         111388999999998


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceE--------------EEEEe-eCCCeeEEEecCC--CCcEEEeeCCcEEEEEEeeh
Q 021925          201 ADGSHFLTGSLDKSAKLWDARTLEL--------------IKTYV-TERPVNAVTMSPL--LDHVCIGEPQTIKFMLLVYL  263 (305)
Q Consensus       201 ~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~-~~~~v~~~~~~~~--~~~l~~~~~~~~~~~~~~~~  263 (305)
                        +++|++++.||.|++||+++++.              +..+. +...|.+++|+|+  +++|++|+.++.     +++
T Consensus       241 --~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~-----i~v  313 (366)
T 3k26_A          241 --GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-----LYV  313 (366)
T ss_dssp             --TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC-----EEE
T ss_pred             --CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc-----EEE
Confidence              67999999999999999987643              55565 7788999999999  999999999987     555


Q ss_pred             hhhhh
Q 021925          264 FVLFL  268 (305)
Q Consensus       264 ~~~~~  268 (305)
                      |++..
T Consensus       314 wd~~~  318 (366)
T 3k26_A          314 WDLEV  318 (366)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            55443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.9e-35  Score=253.12  Aligned_cols=243  Identities=15%  Similarity=0.189  Sum_probs=210.9

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----eeeEEecCCCcc-eEEEEEcC--CCcEEEEEeCCCcEEEE
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGA-VWCCDVSR--DSMTLITGSADQTAKLW   79 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~-v~~i~~~~--~~~~l~s~~~dg~v~vw   79 (305)
                      ..|.+.|++++|+|+|++|++++ ++.|++||+.++    +....+.+|.+. |.+++|+|  ++++|++++.||.|++|
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw   93 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   93 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence            46899999999999999999998 889999999998    889999999999 99999999  99999999999999999


Q ss_pred             ecCCC--------CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCee
Q 021925           80 NVETG--------AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (305)
Q Consensus        80 d~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (305)
                      |+.++        +....+. +...+.+++|+|++..+++++..... ...+..|+        ..+....+.+|...|.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~v~~~d--------~~~~~~~~~~~~~~v~  164 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN-FGVFISWD--------SGNSLGEVSGHSQRIN  164 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC-SEEEEETT--------TCCEEEECCSCSSCEE
T ss_pred             eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC-ccEEEEEE--------CCCcceeeecCCccEE
Confidence            99754        4555555 78899999999999999888653110 12222222        2456778889999999


Q ss_pred             EEEEcCCCC-EEEEeeCCCcEEEEeCCCCcEeeeeccccCCcc---ceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceE
Q 021925          151 RAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITSLAKAAD-GSHFLTGSLDKSAKLWDARTLEL  225 (305)
Q Consensus       151 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~  225 (305)
                      +++|+|+++ .+++++.|+.|++||+++++.+..+.   +|..   .|++++|+|+ +++|++++.||.|++||+++++.
T Consensus       165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  241 (615)
T 1pgu_A          165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR---THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF  241 (615)
T ss_dssp             EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC---SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE
T ss_pred             EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec---ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE
Confidence            999999997 89999999999999999999888887   6777   9999999999 99999999999999999999999


Q ss_pred             EEEE-----eeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925          226 IKTY-----VTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       226 ~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  268 (305)
                      +..+     .+..+|.+++|+ +++++++++.++.     +++|+...
T Consensus       242 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~-----i~~wd~~~  283 (615)
T 1pgu_A          242 LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT-----IRVWDVTT  283 (615)
T ss_dssp             EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE-----EEEEETTT
T ss_pred             eEEecccccccCCceEEEEEc-CCCEEEEEcCCCc-----EEEEECCC
Confidence            9998     688899999999 9999999999987     55555543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.5e-35  Score=237.74  Aligned_cols=242  Identities=14%  Similarity=0.147  Sum_probs=196.2

Q ss_pred             EecccccceEEEEEcCCCCEE-EEeeC---CCceEEEEcCCCeeeEEe-cCCCcceEEEEEcCC---CcEEEEEeCCCcE
Q 021925            5 LMKGHERPLTYLKYNKDGDLL-FSCAK---DHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRD---SMTLITGSADQTA   76 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l-~s~~~---dg~v~iw~~~~~~~~~~~-~~~~~~v~~i~~~~~---~~~l~s~~~dg~v   76 (305)
                      .+.+|.+.|++++|+|+++.+ ++|+.   ||.|++||+.+++..... .+|...|.+++|+|+   +++|++++.||.|
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL   92 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence            467899999999999999655 45655   899999999988765443 368999999999998   6999999999999


Q ss_pred             EEEecCCCC-eeEEEe-eCCCceEEEE------ecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC-
Q 021925           77 KLWNVETGA-QLFTFN-FDSPARSVDF------AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-  147 (305)
Q Consensus        77 ~vwd~~~~~-~~~~~~-~~~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  147 (305)
                      ++||+++++ .+..+. +...+.++.|      +|++..+++++.     ++.+.+|++...     ......+..|.+ 
T Consensus        93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~-----d~~i~vwd~~~~-----~~~~~~~~~~~~~  162 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR-----DGTVKVWDPRQK-----DDPVANMEPVQGE  162 (357)
T ss_dssp             EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET-----TSCEEEECTTSC-----SSCSEEECCCTTS
T ss_pred             EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC-----CCeEEEEeCCCC-----CCcceeccccCCC
Confidence            999999887 777766 7888999965      578888888765     456667766432     124555655554 


Q ss_pred             ---CeeEEE----EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC---CCCEEEEEeCCCeEEE
Q 021925          148 ---RINRAV----WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA---DGSHFLTGSLDKSAKL  217 (305)
Q Consensus       148 ---~i~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i  217 (305)
                         .+.+++    |+|+++++++++.||.|++||+++++.....    .|...|.+++|+|   ++.+|++++.||.|++
T Consensus       163 ~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  238 (357)
T 3i2n_A          163 NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET----NIKNGVCSLEFDRKDISMNKLVATSLEGKFHV  238 (357)
T ss_dssp             CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred             CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec----CCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence               788888    7889999999999999999999998876554    4888999999999   9999999999999999


Q ss_pred             EEcCCceEEEEE------eeCCCeeEEEecCCCC-cEEEeeCCcEEEEEE
Q 021925          218 WDARTLELIKTY------VTERPVNAVTMSPLLD-HVCIGEPQTIKFMLL  260 (305)
Q Consensus       218 wd~~~~~~~~~~------~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~  260 (305)
                      ||+++++++..+      .+...|.+++|+|+++ ++++|+.++...++.
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  288 (357)
T 3i2n_A          239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK  288 (357)
T ss_dssp             EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred             EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence            999987665443      3788999999999999 799999998744333

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.4e-34  Score=235.75  Aligned_cols=238  Identities=19%  Similarity=0.278  Sum_probs=199.6

Q ss_pred             ecccccc--eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            6 MKGHERP--LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         6 l~~h~~~--v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      ..+|...  +.+++|++  ..+++++.||.|++||..+++....+.. |...|.+++|+|++++|++++.||.|++||++
T Consensus        87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            3466655  44566664  5578888999999999999998877765 78999999999999999999999999999999


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      +++.+..+. +...+.+++|+  +..+++++.     ++.+.+|++..     .......+.+|...|.+++|+|++++|
T Consensus       165 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-----dg~i~i~d~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l  232 (401)
T 4aez_A          165 SQTKLRTMAGHQARVGCLSWN--RHVLSSGSR-----SGAIHHHDVRI-----ANHQIGTLQGHSSEVCGLAWRSDGLQL  232 (401)
T ss_dssp             TCCEEEEECCCSSCEEEEEEE--TTEEEEEET-----TSEEEEEETTS-----SSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CCeEEEEecCCCCceEEEEEC--CCEEEEEcC-----CCCEEEEeccc-----CcceeeEEcCCCCCeeEEEEcCCCCEE
Confidence            999888886 78899999994  456666654     45667777642     235677889999999999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEe--CCCeEEEEEcCCceEEEEEeeCCCeeEE
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS--LDKSAKLWDARTLELIKTYVTERPVNAV  238 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~  238 (305)
                      ++++.||.|++||+++++.+..+.   .|...|.+++|+|++. ++++++  .|+.|++||+++++++..+.+...+.++
T Consensus       233 ~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~  309 (401)
T 4aez_A          233 ASGGNDNVVQIWDARSSIPKFTKT---NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSL  309 (401)
T ss_dssp             EEEETTSCEEEEETTCSSEEEEEC---CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred             EEEeCCCeEEEccCCCCCccEEec---CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            999999999999999999888876   7899999999999765 555654  7999999999999999999988999999


Q ss_pred             EecCCCCcEEEee--CCcEEEEEE
Q 021925          239 TMSPLLDHVCIGE--PQTIKFMLL  260 (305)
Q Consensus       239 ~~~~~~~~l~~~~--~~~~~~~~~  260 (305)
                      +|+|+++.+++++  .++...++.
T Consensus       310 ~~s~~~~~l~~~~g~~dg~i~v~~  333 (401)
T 4aez_A          310 IWSPHSKEIMSTHGFPDNNLSIWS  333 (401)
T ss_dssp             EECSSSSEEEEEECTTTCEEEEEE
T ss_pred             EECCCCCeEEEEeecCCCcEEEEe
Confidence            9999999999953  677643333

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.9e-34  Score=256.12  Aligned_cols=237  Identities=19%  Similarity=0.277  Sum_probs=205.7

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|.++|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||++++
T Consensus        50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~  129 (814)
T 3mkq_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (814)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred             EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             -CeeEEEe-eCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec-cCCCeeEEEEcC--CC
Q 021925           85 -AQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGP--LN  158 (305)
Q Consensus        85 -~~~~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--~~  158 (305)
                       .....+. +...+.+++|+| ++..+++++.     ++.+.+|++..      ......+.. +...+.+++|+|  ++
T Consensus       130 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~v~vwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~  198 (814)
T 3mkq_A          130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCL-----DRTVKVWSLGQ------STPNFTLTTGQERGVNYVDYYPLPDK  198 (814)
T ss_dssp             SEEEEEEECCSSCEEEEEEETTEEEEEEEEET-----TSEEEEEETTC------SSCSEEEECCCTTCCCEEEECCSTTC
T ss_pred             ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC-----CCeEEEEECCC------CcceeEEecCCCCCEEEEEEEECCCC
Confidence             4445554 778899999999 7777777764     45667776532      233344444 448999999999  99


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeE
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA  237 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~  237 (305)
                      +++++++.||.|++||+++++.+..+.   +|...|++++|+|++++|++++.||.|++||+.+++.+..+. +..++.+
T Consensus       199 ~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~  275 (814)
T 3mkq_A          199 PYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC  275 (814)
T ss_dssp             CEEEEECTTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEE
Confidence            999999999999999999999888887   788999999999999999999999999999999999998887 6789999


Q ss_pred             EEecCCCCc--EEEeeCCcE
Q 021925          238 VTMSPLLDH--VCIGEPQTI  255 (305)
Q Consensus       238 ~~~~~~~~~--l~~~~~~~~  255 (305)
                      ++|+|+++.  +++++.++.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~  295 (814)
T 3mkq_A          276 IATHPTGRKNYIASGFDNGF  295 (814)
T ss_dssp             EEECTTCGGGEEEEEETTEE
T ss_pred             EEEccCCCceEEEEEeCCCE
Confidence            999999974  555555543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=242.84  Aligned_cols=240  Identities=13%  Similarity=0.231  Sum_probs=191.2

Q ss_pred             Eecccc------------cceEEEEEcCCC--CEEEEeeCCCceEEEEcCCCeee-------------------------
Q 021925            5 LMKGHE------------RPLTYLKYNKDG--DLLFSCAKDHTPTVWFADNGERL-------------------------   45 (305)
Q Consensus         5 ~l~~h~------------~~v~~~~~~~~~--~~l~s~~~dg~v~iw~~~~~~~~-------------------------   45 (305)
                      .+.+|.            +.|++++|+|++  ..|++++.||.|++||+.+++..                         
T Consensus        76 ~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  155 (447)
T 3dw8_B           76 TFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVP  155 (447)
T ss_dssp             EEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCC
T ss_pred             ccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEec
Confidence            577898            889999999998  79999999999999998764432                         


Q ss_pred             --------------EE-ecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC-CCeeEEE--------eeCCCceEEEE
Q 021925           46 --------------GT-YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQLFTF--------NFDSPARSVDF  101 (305)
Q Consensus        46 --------------~~-~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~--------~~~~~v~~~~~  101 (305)
                                    .. ..+|...|.+++|+|++++|++| .|+.|++||+++ ++....+        .+...+.+++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  234 (447)
T 3dw8_B          156 VFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEF  234 (447)
T ss_dssp             EEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEE
T ss_pred             cccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEE
Confidence                          12 36799999999999999999998 799999999984 4444433        36778999999


Q ss_pred             ecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC------------CeeEEEEcCCCCEEEEeeCCC
Q 021925          102 AVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG------------RINRAVWGPLNRTIISAGEDA  168 (305)
Q Consensus       102 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg  168 (305)
                      +|++ ..+++++.     ++.+.+|++.....  .......+..|..            .|.+++|+|++++|++++. +
T Consensus       235 ~p~~~~~l~s~~~-----dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~  306 (447)
T 3dw8_B          235 HPNSCNTFVYSSS-----KGTIRLCDMRASAL--CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L  306 (447)
T ss_dssp             CSSCTTEEEEEET-----TSCEEEEETTTCSS--SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred             CCCCCcEEEEEeC-----CCeEEEEECcCCcc--ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C
Confidence            9998 78887765     56777887754321  1122566677765            8999999999999999999 9


Q ss_pred             cEEEEeCCC-CcEeeeeccccCCccc---------------eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE---
Q 021925          169 IVRIWDTET-GKLLKESDKETGHKKT---------------ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY---  229 (305)
Q Consensus       169 ~i~iwd~~~-~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---  229 (305)
                      .|++||+++ ++++..+.   .|...               +..++|+|++++|++|+.||.|++||+.+++.+...   
T Consensus       307 ~v~iwd~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  383 (447)
T 3dw8_B          307 SVKVWDLNMENRPVETYQ---VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASR  383 (447)
T ss_dssp             EEEEEETTCCSSCSCCEE---SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCS
T ss_pred             eEEEEeCCCCccccceee---ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecc
Confidence            999999997 77777776   44321               334899999999999999999999999988776422   


Q ss_pred             ------------------------------eeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          230 ------------------------------VTERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       230 ------------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                                                    .....|.+++|+|++++|++|+.++..
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~  440 (447)
T 3dw8_B          384 ENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLY  440 (447)
T ss_dssp             TTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEE
T ss_pred             cccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceee
Confidence                                          123468899999999999999988754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.7e-35  Score=235.92  Aligned_cols=239  Identities=11%  Similarity=0.059  Sum_probs=200.0

Q ss_pred             ceEecccccceEEEEEcCCCC-EEEEeeCCCceEEEEc-CCCeeeEEecC--CCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925            3 PILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFA-DNGERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAKL   78 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~dg~v~v   78 (305)
                      +..+.+|...|++++|+|+++ +|++|+.||.|++||+ .+++. ..+.+  |...|.+++|+| ++.|++++.|+.|++
T Consensus        49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~i  126 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEV  126 (342)
T ss_dssp             EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEE
T ss_pred             ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEE
Confidence            345678999999999999999 9999999999999999 77654 77888  999999999999 999999999999999


Q ss_pred             EecCC---------CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe
Q 021925           79 WNVET---------GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI  149 (305)
Q Consensus        79 wd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (305)
                      ||+++         ++.+..+.+...+.+++|++++  +++++.     .+.+.+|++...   ...........|...+
T Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~-----d~~i~i~d~~~~---~~~~~~~~~~~~~~~i  196 (342)
T 1yfq_A          127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMN-----NSQVQWFRLPLC---EDDNGTIEESGLKYQI  196 (342)
T ss_dssp             ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEES-----TTEEEEEESSCC---TTCCCEEEECSCSSCE
T ss_pred             EcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeC-----CCeEEEEECCcc---ccccceeeecCCCCce
Confidence            99987         7767677788899999999988  444433     345666766431   1112344556788899


Q ss_pred             eEEEEcC-CCCEEEEeeCCCcEEEEeCCCC------cEeeeecccc------CCccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925          150 NRAVWGP-LNRTIISAGEDAIVRIWDTETG------KLLKESDKET------GHKKTITSLAKAADGSHFLTGSLDKSAK  216 (305)
Q Consensus       150 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~  216 (305)
                      .+++|+| +++++++++.||.|++||++..      +....+....      +|...|++++|+|++++|++++.||.|+
T Consensus       197 ~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  276 (342)
T 1yfq_A          197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS  276 (342)
T ss_dssp             EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred             eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence            9999999 9999999999999999999876      5566665211      1234999999999999999999999999


Q ss_pred             EEEcCCceEEEEEe-e-CCCeeEEEecCCCCcEEEeeCCcE
Q 021925          217 LWDARTLELIKTYV-T-ERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       217 iwd~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      +||+++++.+..+. + ..+|.+++  |++++|++|+.|+.
T Consensus       277 vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          277 CWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             EEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             EEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            99999999999887 5 88999999  99999999998873

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-34  Score=257.98  Aligned_cols=240  Identities=14%  Similarity=0.116  Sum_probs=195.9

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ....||.+.|++++|+|++++||+|+.||.|+||+..+.+....+. |..+|.+++|+| +++|++++.|++|++||+++
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence            3456899999999999999999999999999999998877765554 788999999999 88999999999999999999


Q ss_pred             CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceE-------EEEeccCCCeeEEEEcC
Q 021925           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-------LILKGPQGRINRAVWGP  156 (305)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~  156 (305)
                      ++.+..+.+...+.+++|+|++.++++++.     ++.+.+|++......  ...+       ..+.+|.+.|.+++|+|
T Consensus        89 ~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~-----dg~V~lwd~~~~~~~--~~~i~~~~~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           89 QKVLTTVFVPGKITSIDTDASLDWMLIGLQ-----NGSMIVYDIDRDQLS--SFKLDNLQKSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             CSEEEEEECSSCEEEEECCTTCSEEEEEET-----TSCEEEEETTTTEEE--EEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred             CcEEEEEcCCCCEEEEEECCCCCEEEEEcC-----CCcEEEEECCCCccc--cceeccccccccccccCCCCeEEEEEcc
Confidence            999999988899999999999999998875     566777776432110  0000       12367889999999999


Q ss_pred             C-CCEEEEeeCCCcEEEEeCCCCcEeeeeccc---------------cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          157 L-NRTIISAGEDAIVRIWDTETGKLLKESDKE---------------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       157 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      + +..+++|+.||.| +||+++++.+..+...               ..|...|++++|+|+|++|++++.||.|++||+
T Consensus       162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            6 4789999999999 9999999888777522               123578999999999999999999999999999


Q ss_pred             CCceEEEE--Ee-----------------eCCCeeEEEec----CCC-CcEEEeeCC
Q 021925          221 RTLELIKT--YV-----------------TERPVNAVTMS----PLL-DHVCIGEPQ  253 (305)
Q Consensus       221 ~~~~~~~~--~~-----------------~~~~v~~~~~~----~~~-~~l~~~~~~  253 (305)
                      ++++++..  +.                 +..+|.+++|+    |++ .++++|+.+
T Consensus       241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            99988754  21                 13469999995    444 456666554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.2e-34  Score=238.37  Aligned_cols=240  Identities=12%  Similarity=0.121  Sum_probs=166.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee-----EEecCCCcceEEEEEcC--------CCcEEEEEeCCCcE
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-----GTYRGHNGAVWCCDVSR--------DSMTLITGSADQTA   76 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~-----~~~~~~~~~v~~i~~~~--------~~~~l~s~~~dg~v   76 (305)
                      ...+....+++++.+|++++.|++|+|||.++++..     ..+.+|.+.|.+++|+|        |+++|++++.|++|
T Consensus        89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv  168 (393)
T 4gq1_A           89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL  168 (393)
T ss_dssp             --------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred             CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence            333344444556778999999999999999987643     34678999999999997        78999999999999


Q ss_pred             EEEecCCCCeeEE-EeeCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCC-------------------
Q 021925           77 KLWNVETGAQLFT-FNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQG-------------------  135 (305)
Q Consensus        77 ~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  135 (305)
                      +|||++++..+.. ..+...+.+++|+|++. ++++++.     ++.+.+|++........                   
T Consensus       169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-----d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~  243 (393)
T 4gq1_A          169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER-----NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP  243 (393)
T ss_dssp             EEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET-----TSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred             EEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC-----CCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence            9999987765554 45889999999999875 5666544     45667776643221110                   


Q ss_pred             CceEEEEeccCCCeeEEEEc-CCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEE-----------------
Q 021925          136 GESVLILKGPQGRINRAVWG-PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL-----------------  197 (305)
Q Consensus       136 ~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-----------------  197 (305)
                      ........+|...+.++.|+ |+++.+++++.|+.+++||+..++....+.   .|...+..+                 
T Consensus       244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (393)
T 4gq1_A          244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS---DSTMKLGPKNLLPNVQGISLFPSLLG  320 (393)
T ss_dssp             GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSC
T ss_pred             ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe---eecCccccEEEccccccccccCccee
Confidence            01112345788899999987 799999999999999999998876655543   222222222                 


Q ss_pred             -EEcC--CCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925          198 -AKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKF  257 (305)
Q Consensus       198 -~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~  257 (305)
                       .++|  ++.++++|+.||+|++||+.++++..... +..+|.+++|+|+|++||+++.++..+
T Consensus       321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~l  384 (393)
T 4gq1_A          321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLL  384 (393)
T ss_dssp             CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEE
T ss_pred             EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence             2333  34467788899999999999998776655 888999999999999999999888543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.8e-33  Score=221.43  Aligned_cols=244  Identities=17%  Similarity=0.257  Sum_probs=205.3

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|...|++++|+|++++|++|+.||+|++||+++++.+..+.+|...+.++.+  ++..+++++.++.+++|+....
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCC
Confidence            45688899999999999999999999999999999999999999999998887665  4669999999999999998876


Q ss_pred             Cee-EEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE-
Q 021925           85 AQL-FTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-  161 (305)
Q Consensus        85 ~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-  161 (305)
                      ... ..+. +...+..+.+.+++..++++..     ++.+.+|++.....  ..........+.+.|.++.++|++..+ 
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~  212 (318)
T 4ggc_A          140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGN-----DNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQSNVL  212 (318)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEESSCBTT--BSCCSEEECCCCSCEEEEEECTTSTTEE
T ss_pred             ceeEEEEcCccCceEEEEEcCCCCEEEEEec-----CcceeEEECCCCcc--cccceeeecccCCceEEEEecCCCCcEE
Confidence            543 3333 7888999999999999988765     56677777654321  223455667788999999999987533 


Q ss_pred             --EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925          162 --ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPVN  236 (305)
Q Consensus       162 --~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~-~~~~v~  236 (305)
                        ++++.++.|++||.+.........    +...+..+.|+|++..+++++  .|+.|++||+++++++.++. |..+|+
T Consensus       213 ~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~  288 (318)
T 4ggc_A          213 ATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL  288 (318)
T ss_dssp             EEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             EEEecCCCCEEEEEeccccccccccc----ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence              366788999999999888777664    778899999999999887654  79999999999999999998 899999


Q ss_pred             EEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                      +++|+|++++|++|+.|+.     +++|++
T Consensus       289 ~l~~spdg~~l~S~s~D~~-----v~iWd~  313 (318)
T 4ggc_A          289 SLTMSPDGATVASAAADET-----LRLWRC  313 (318)
T ss_dssp             EEEECTTSSCEEEEETTTE-----EEEECC
T ss_pred             EEEEcCCCCEEEEEecCCe-----EEEEEC
Confidence            9999999999999999998     666665

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-34  Score=239.98  Aligned_cols=236  Identities=11%  Similarity=0.120  Sum_probs=195.4

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcC---CCeeeEEecC------------CCcceEEEE--EcCCCcEEEEE
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---NGERLGTYRG------------HNGAVWCCD--VSRDSMTLITG   70 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~---~~~~~~~~~~------------~~~~v~~i~--~~~~~~~l~s~   70 (305)
                      +|.++|++++|+|++++|++|+.||.|++||++   +++....+..            +...+.++.  +++++++|+++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            699999999999999999999999999999985   4544443321            455677777  56789999999


Q ss_pred             eCCCcEEEEecCCCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-ccC
Q 021925           71 SADQTAKLWNVETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQ  146 (305)
Q Consensus        71 ~~dg~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  146 (305)
                      +.||.|++||+++++.+..+.   +...+.+++|+|++..+++++.     ++.+.+|++..      .+.+..+. .|.
T Consensus       189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----dg~i~iwd~~~------~~~~~~~~~~~~  257 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-----RGIIDIWDIRF------NVLIRSWSFGDH  257 (437)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET-----TSCEEEEETTT------TEEEEEEBCTTC
T ss_pred             eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC-----CCeEEEEEcCC------ccEEEEEecCCC
Confidence            999999999999999998887   4789999999999999998875     56677777743      45566665 788


Q ss_pred             CCeeEEEEcC----CCCEEEEeeCCCcEEEEeCCCCcEeeeeccc---------------------cC--CccceEEEEE
Q 021925          147 GRINRAVWGP----LNRTIISAGEDAIVRIWDTETGKLLKESDKE---------------------TG--HKKTITSLAK  199 (305)
Q Consensus       147 ~~i~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------~~--~~~~v~~~~~  199 (305)
                      ..|.+++|+|    ++++|++++.||.|++||+++++.+..+...                     .+  |...|++++|
T Consensus       258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~  337 (437)
T 3gre_A          258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV  337 (437)
T ss_dssp             EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred             CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence            8999996654    5779999999999999999999877766521                     11  6778999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--------------------------------------eCCCeeEEEec
Q 021925          200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV--------------------------------------TERPVNAVTMS  241 (305)
Q Consensus       200 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------------------------~~~~v~~~~~~  241 (305)
                      + ++++|++|+.||.|++||+++++....+.                                      |...|++++|+
T Consensus       338 ~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~  416 (437)
T 3gre_A          338 S-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTC  416 (437)
T ss_dssp             E-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEE
T ss_pred             C-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeee
Confidence            9 77899999999999999999887666554                                      67889999999


Q ss_pred             CC--CCcEEEeeCCcE
Q 021925          242 PL--LDHVCIGEPQTI  255 (305)
Q Consensus       242 ~~--~~~l~~~~~~~~  255 (305)
                      ++  +.+|++|+.++.
T Consensus       417 ~~~~~~~l~s~~~dG~  432 (437)
T 3gre_A          417 EVDETPLLVACDNSGL  432 (437)
T ss_dssp             ESSSSEEEEEEETTSC
T ss_pred             ccCCceEEEEEcCCce
Confidence            98  778999999987

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-33  Score=234.62  Aligned_cols=240  Identities=17%  Similarity=0.180  Sum_probs=194.6

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe---eeEEecC-----------------------------------
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRG-----------------------------------   50 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~-----------------------------------   50 (305)
                      ...++.+++|+|+|++|+++ .++.|++||+.+++   .+..+..                                   
T Consensus         3 ~~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            3 VIHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             EECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             ccccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            34689999999999976665 57899999999988   5555543                                   


Q ss_pred             -------------------CCcceEEEEEcCCCcEE-EEEeCCCcEEEEecC--CCCeeEEEe---eCCCceEEEEecCC
Q 021925           51 -------------------HNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVE--TGAQLFTFN---FDSPARSVDFAVGD  105 (305)
Q Consensus        51 -------------------~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~--~~~~~~~~~---~~~~v~~~~~~~~~  105 (305)
                                         |.+.|.+++|+|++++| ++++.||.|++||+.  +++.+..+.   +...+.+++|+|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  161 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD  161 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence                               33379999999999996 899999999999999  888877774   56889999999999


Q ss_pred             ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCCCcEee
Q 021925          106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL---NRTIISAGEDAIVRIWDTETGKLLK  182 (305)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~  182 (305)
                      ..++++..     .+.+..+++......  ......+.+|...|.+++|+|+   +++|++++.|+.|++||+++++.+.
T Consensus       162 ~~l~~~~~-----~g~v~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  234 (450)
T 2vdu_B          162 TTVIIADK-----FGDVYSIDINSIPEE--KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD  234 (450)
T ss_dssp             SEEEEEET-----TSEEEEEETTSCCCS--SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred             CEEEEEeC-----CCcEEEEecCCcccc--cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence            99988864     344555554322111  1133356789999999999999   9999999999999999999988777


Q ss_pred             eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee--------------------------CCCee
Q 021925          183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--------------------------ERPVN  236 (305)
Q Consensus       183 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------~~~v~  236 (305)
                      .+.  .+|...|++++|+ ++++|++++.|+.|++||+++++++..+..                          ...|.
T Consensus       235 ~~~--~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          235 KWL--FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             EEC--CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             eee--cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence            632  2689999999999 999999999999999999999998887752                          24688


Q ss_pred             EEEecCCCCcEEEee-CCcEEEEE
Q 021925          237 AVTMSPLLDHVCIGE-PQTIKFML  259 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~-~~~~~~~~  259 (305)
                      +++|+|++++|++++ .++...++
T Consensus       312 ~i~~~~~~~~l~~~~~~d~~i~iw  335 (450)
T 2vdu_B          312 KIIKSKNLPFVAFFVEATKCIIIL  335 (450)
T ss_dssp             EEEECSSSSEEEEEETTCSEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEE
Confidence            999999999999998 66663333

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.7e-33  Score=221.72  Aligned_cols=211  Identities=18%  Similarity=0.272  Sum_probs=170.9

Q ss_pred             eEecccccceEEEEEcC--CCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEE
Q 021925            4 ILMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK   77 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~   77 (305)
                      ..+.+|.++|++++|+|  ++++|++|+.||+|++||+++++  .+..+.+|...|.+++|+|+  +.+|++++.|++|+
T Consensus        47 ~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~  126 (297)
T 2pm7_B           47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS  126 (297)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence            35789999999999986  48999999999999999998874  56677889999999999997  88999999999999


Q ss_pred             EEecCCCCe--eEEE-eeCCCceEEEEecC-------------CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE
Q 021925           78 LWNVETGAQ--LFTF-NFDSPARSVDFAVG-------------DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (305)
Q Consensus        78 vwd~~~~~~--~~~~-~~~~~v~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (305)
                      +||++++..  ...+ .+...+.+++|+|+             +..+++++.     ++.+.+|++....  ........
T Consensus       127 ~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~-----D~~v~lwd~~~~~--~~~~~~~~  199 (297)
T 2pm7_B          127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----DNLVKIWKYNSDA--QTYVLEST  199 (297)
T ss_dssp             EEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEET-----TSCEEEEEEETTT--TEEEEEEE
T ss_pred             EEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC-----CCcEEEEEEcCCC--ceEEEEEE
Confidence            999987642  2233 37788999999997             356666654     5677888775321  11124567


Q ss_pred             EeccCCCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925          142 LKGPQGRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (305)
Q Consensus       142 ~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  216 (305)
                      +.+|...|.+++|+|++   ++|++++.|++|++||+++...  .........|...|.+++|+|++++|++++.||.|+
T Consensus       200 l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~  279 (297)
T 2pm7_B          200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  279 (297)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred             ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence            88999999999999985   8999999999999999987431  111211135788999999999999999999999999


Q ss_pred             EEEcC
Q 021925          217 LWDAR  221 (305)
Q Consensus       217 iwd~~  221 (305)
                      +|+..
T Consensus       280 lw~~~  284 (297)
T 2pm7_B          280 LWKEN  284 (297)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99976

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.9e-33  Score=231.41  Aligned_cols=237  Identities=23%  Similarity=0.394  Sum_probs=199.1

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|.+.|.+++|  ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++  ..+++++.||.|++||++++
T Consensus       168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  243 (435)
T 1p22_A          168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASP  243 (435)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSS
T ss_pred             EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCC
Confidence            57799999999999  788999999999999999999999999999999999999974  49999999999999999988


Q ss_pred             CeeE---EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           85 AQLF---TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        85 ~~~~---~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      +...   ... +...+.++++  ++..+++++.     ++.+.+|++.      ..+.+..+.+|...+.++.++  +++
T Consensus       244 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~-----dg~i~vwd~~------~~~~~~~~~~~~~~v~~~~~~--~~~  308 (435)
T 1p22_A          244 TDITLRRVLVGHRAAVNVVDF--DDKYIVSASG-----DRTIKVWNTS------TCEFVRTLNGHKRGIACLQYR--DRL  308 (435)
T ss_dssp             SCCEEEEEECCCSSCEEEEEE--ETTEEEEEET-----TSEEEEEETT------TCCEEEEEECCSSCEEEEEEE--TTE
T ss_pred             CCceeeeEecCCCCcEEEEEe--CCCEEEEEeC-----CCeEEEEECC------cCcEEEEEcCCCCcEEEEEeC--CCE
Confidence            7653   222 6778888888  5666666654     4566777763      356788889999999999995  689


Q ss_pred             EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce---------EEEEEe-
Q 021925          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE---------LIKTYV-  230 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~-  230 (305)
                      +++|+.||.|++||+++++.+..+.   +|...|.+++|  ++.+|++|+.||.|++||+++++         ++..+. 
T Consensus       309 l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  383 (435)
T 1p22_A          309 VVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE  383 (435)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC
T ss_pred             EEEEeCCCeEEEEECCCCCEEEEEe---CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC
Confidence            9999999999999999999998887   79999999999  67899999999999999998776         677776 


Q ss_pred             eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          231 TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       231 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      |..+|.+++|  +++.|++|+.|+.     +.+|++..+...
T Consensus       384 h~~~v~~l~~--~~~~l~s~s~Dg~-----i~iwd~~~~~~~  418 (435)
T 1p22_A          384 HSGRVFRLQF--DEFQIVSSSHDDT-----ILIWDFLNDPAA  418 (435)
T ss_dssp             CSSCCCCEEE--CSSCEEECCSSSE-----EEEEC-------
T ss_pred             CCCCeEEEEe--CCCEEEEEeCCCE-----EEEEECCCCCCc
Confidence            8889999999  7788999999987     777776554433

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=6.5e-33  Score=224.90  Aligned_cols=230  Identities=8%  Similarity=0.046  Sum_probs=178.6

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETG   84 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~   84 (305)
                      +.+|.+.|++++|+|||++|++|+.+| +++|+.++++.......  ..+..+++.++++.+ ++++.|++|++||.+++
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~   91 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK   91 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence            578999999999999999999988775 78999988776655442  247788888888777 56778899999999999


Q ss_pred             CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE-
Q 021925           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-  163 (305)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-  163 (305)
                      +.+..+.+...+.++.++++...+  +.      ...+.+|++....     +.+..+..   ....+++++  ++++. 
T Consensus        92 ~~~~~~~~~~~v~~v~~~~~~~~~--~~------~~~i~i~d~~~~~-----~~~~~~~~---~~~~~~~s~--~~la~~  153 (355)
T 3vu4_A           92 QDVSRIKVDAPVKDLFLSREFIVV--SY------GDVISVFKFGNPW-----KRITDDIR---FGGVCEFSN--GLLVYS  153 (355)
T ss_dssp             EEEEEEECSSCEEEEEECSSEEEE--EE------TTEEEEEESSTTC-----CBSSCCEE---EEEEEEEET--TEEEEE
T ss_pred             cEEEEEECCCceEEEEEcCCEEEE--EE------cCEEEEEECCCCc-----eeeEEecc---CCceEEEEc--cEEEEe
Confidence            999999999999999998865333  22      3456777765431     11111111   333456666  56665 


Q ss_pred             -eeCCCcEEEEeCCCCc---------------E-eeeeccccCCccceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCceE
Q 021925          164 -AGEDAIVRIWDTETGK---------------L-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLEL  225 (305)
Q Consensus       164 -~~~dg~i~iwd~~~~~---------------~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~  225 (305)
                       |+.||.|++||+++++               + +..+.   +|...|++++|+|+|++|++|+.||+ |++||++++++
T Consensus       154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             ESSCTTCEEEEECCC------------------CCEEEC---CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred             CCCcCcEEEEEECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence             6889999999999765               1 44454   89999999999999999999999998 99999999999


Q ss_pred             EEEEe---eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925          226 IKTYV---TERPVNAVTMSPLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       226 ~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~  259 (305)
                      +..+.   |..+|.+++|+|++++|++++.|+...++
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw  267 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF  267 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred             EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence            99997   78899999999999999999999873333

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-33  Score=232.65  Aligned_cols=235  Identities=18%  Similarity=0.214  Sum_probs=191.8

Q ss_pred             cceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCe----eeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCC
Q 021925           11 RPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .....++++|+...++ +++.||.|+||++.+..    ....+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            3455688888765444 57889999999986642    3456778999999999999 8999999999999999999987


Q ss_pred             -------CeeEEEe-eCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE--eccCCCeeEEE
Q 021925           85 -------AQLFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL--KGPQGRINRAV  153 (305)
Q Consensus        85 -------~~~~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~  153 (305)
                             +.+..+. +...+.+++|+|++ .++++++.     ++.+.+|++.      ..+....+  ..|...|.+++
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~-----dg~i~iwd~~------~~~~~~~~~~~~~~~~v~~~~  183 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-----DNVILVWDVG------TGAAVLTLGPDVHPDTIYSVD  183 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET-----TSCEEEEETT------TTEEEEEECTTTCCSCEEEEE
T ss_pred             CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC-----CCEEEEEECC------CCCccEEEecCCCCCceEEEE
Confidence                   5566666 88899999999998 57776654     4567777764      34566777  78999999999


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCcEeeee-ccccCCccc-eEEEEEcCCCCEEEEE---eCCCeEEEEEcCCceE-EE
Q 021925          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKES-DKETGHKKT-ITSLAKAADGSHFLTG---SLDKSAKLWDARTLEL-IK  227 (305)
Q Consensus       154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~  227 (305)
                      |+|++++|++++.||.|++||+++++.+..+ .   .|... +.+++|+|++++|++|   +.|+.|++||+++++. +.
T Consensus       184 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~  260 (402)
T 2aq5_A          184 WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR---PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS  260 (402)
T ss_dssp             ECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC---SSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE
T ss_pred             ECCCCCEEEEEecCCcEEEEeCCCCceeeeecc---CCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce
Confidence            9999999999999999999999999988877 4   46554 8999999999999999   7899999999998754 33


Q ss_pred             --EEeeCCCeeEEEecCCCCcEEEee-CCcEEEEE
Q 021925          228 --TYVTERPVNAVTMSPLLDHVCIGE-PQTIKFML  259 (305)
Q Consensus       228 --~~~~~~~v~~~~~~~~~~~l~~~~-~~~~~~~~  259 (305)
                        .+.+...+.+++|+|++++|++++ .++...++
T Consensus       261 ~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~  295 (402)
T 2aq5_A          261 LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF  295 (402)
T ss_dssp             EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred             EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence              334677899999999999997654 57763333

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.2e-32  Score=227.97  Aligned_cols=235  Identities=24%  Similarity=0.399  Sum_probs=200.6

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      .+|...|.++.+  +++++++|+.||.|++||..+++....+.+|.+.|.+++|  ++++|++|+.||.|++||+++++.
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            356677988877  7899999999999999999999999999999999999999  678999999999999999999999


Q ss_pred             eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           87 LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        87 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      +..+. +...+.++++++  ..+++++.     ++.+.+|++....   .......+.+|...|.++++  +++++++|+
T Consensus       206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~-----dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~  273 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRFNN--GMMVTCSK-----DRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDF--DDKYIVSAS  273 (435)
T ss_dssp             EEEECCCCSCEEEEECCT--TEEEEEET-----TSCEEEEECSSSS---CCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEcC--CEEEEeeC-----CCcEEEEeCCCCC---CceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence            88887 778899999874  35555543     4567777765321   12334677899999999999  688999999


Q ss_pred             CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCC
Q 021925          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL  244 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  244 (305)
                      .||.|++||+++++.+..+.   +|...|.+++++  ++++++|+.||.|++||+++++++..+. |...|.+++|  ++
T Consensus       274 ~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~  346 (435)
T 1p22_A          274 GDRTIKVWNTSTCEFVRTLN---GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DN  346 (435)
T ss_dssp             TTSEEEEEETTTCCEEEEEE---CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CS
T ss_pred             CCCeEEEEECCcCcEEEEEc---CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cC
Confidence            99999999999999998887   789999999984  6799999999999999999999999888 8889999999  78


Q ss_pred             CcEEEeeCCcEEEEEEeehhhhhhh
Q 021925          245 DHVCIGEPQTIKFMLLVYLFVLFLD  269 (305)
Q Consensus       245 ~~l~~~~~~~~~~~~~~~~~~~~~~  269 (305)
                      ++|++|+.++.     +++|++...
T Consensus       347 ~~l~sg~~dg~-----i~vwd~~~~  366 (435)
T 1p22_A          347 KRIVSGAYDGK-----IKVWDLVAA  366 (435)
T ss_dssp             SEEEEEETTSC-----EEEEEHHHH
T ss_pred             CEEEEEeCCCc-----EEEEECCCC
Confidence            89999999987     566665443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2e-33  Score=230.05  Aligned_cols=209  Identities=21%  Similarity=0.393  Sum_probs=178.3

Q ss_pred             EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCeeeEEe-----cCCCcceEEEEEcC-CCcEEEEEeCCCcEE
Q 021925            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTY-----RGHNGAVWCCDVSR-DSMTLITGSADQTAK   77 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~-----~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~   77 (305)
                      .+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+     .+|...|.+++|++ ++++|++|+.||+|+
T Consensus       152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~  231 (380)
T 3iz6_a          152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR  231 (380)
T ss_dssp             BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred             eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence            47799999999999996 457999999999999999999988877     67999999999987 889999999999999


Q ss_pred             EEecC-CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-------CCC
Q 021925           78 LWNVE-TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-------QGR  148 (305)
Q Consensus        78 vwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  148 (305)
                      +||++ .++.+..+. +...|.+++|+|++..+++++.     ++.+.+|++..      ++.+..+..+       ...
T Consensus       232 ~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-----D~~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~  300 (380)
T 3iz6_a          232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD-----DGTCRLFDMRT------GHQLQVYNREPDRNDNELPI  300 (380)
T ss_dssp             EEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS-----SSCEEEEETTT------TEEEEEECCCCSSSCCSSCS
T ss_pred             EEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC-----CCeEEEEECCC------CcEEEEecccccccccccCc
Confidence            99998 446666665 8889999999999999999876     66777887643      2344444333       234


Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc-cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       149 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  224 (305)
                      +++++|+|++++|++|+.||.|++||+.+++.+..+... .+|...|++++|+|+|++|++|+.||+|++|++...+
T Consensus       301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             eEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            899999999999999999999999999998887766322 3789999999999999999999999999999998654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-32  Score=256.02  Aligned_cols=209  Identities=21%  Similarity=0.405  Sum_probs=178.2

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+.+|.+.|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|  ++..+++++.||.|++||++
T Consensus       652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~  731 (1249)
T 3sfz_A          652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN  731 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT
T ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC
Confidence            5789999999999999999999999999999999999999999999999999999999  55689999999999999999


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC-----------------------------
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA-----------------------------  132 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  132 (305)
                      +++.+..+. +...+.+++|+|++..+++++.     ++.+.+|++.....                             
T Consensus       732 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  806 (1249)
T 3sfz_A          732 QKECRNTMFGHTNSVNHCRFSPDDELLASCSA-----DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW  806 (1249)
T ss_dssp             SSSEEEEECCCSSCEEEEEECSSTTEEEEEES-----SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred             CcchhheecCCCCCEEEEEEecCCCEEEEEEC-----CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence            999888876 8889999999999998888765     33444444321100                             


Q ss_pred             -------------------CCCCceEEE-EeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCcc
Q 021925          133 -------------------DQGGESVLI-LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK  192 (305)
Q Consensus       133 -------------------~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  192 (305)
                                         ......... ..+|...+.+++|+|+++++++++.||.|++||+.++..+..+.   +|..
T Consensus       807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~h~~  883 (1249)
T 3sfz_A          807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR---GHLS  883 (1249)
T ss_dssp             CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC---CCSS
T ss_pred             CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC---CCcc
Confidence                               001112222 23788999999999999999999999999999999999888887   7889


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          193 TITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      .|++++|+|+++.|++++.||.|++||+.
T Consensus       884 ~v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          884 WVHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence            99999999999999999999999999854

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.6e-32  Score=238.24  Aligned_cols=238  Identities=14%  Similarity=0.175  Sum_probs=204.2

Q ss_pred             eEecccccc-eEEEEEcC--CCCEEEEeeCCCceEEEEcCCC--------eeeEEecCCCcceEEEEEcCCCcEEEEEeC
Q 021925            4 ILMKGHERP-LTYLKYNK--DGDLLFSCAKDHTPTVWFADNG--------ERLGTYRGHNGAVWCCDVSRDSMTLITGSA   72 (305)
Q Consensus         4 ~~l~~h~~~-v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~~--------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~   72 (305)
                      ..+.+|.+. |++++|+|  ++++|++|+.||.|++||+.++        +.+..+..|..+|.+++|+|++++|++++.
T Consensus        57 ~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  136 (615)
T 1pgu_A           57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE  136 (615)
T ss_dssp             EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEecc
Confidence            357899999 99999999  9999999999999999999754        677788889999999999999999999998


Q ss_pred             C----CcEEEEecCCCCeeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC
Q 021925           73 D----QTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (305)
Q Consensus        73 d----g~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (305)
                      +    +.|.+||  .++.+..+. +...+.+++|+|++. .+++++.     ++.+.+|+.      ...+....+.+|.
T Consensus       137 ~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d~~v~vwd~------~~~~~~~~~~~~~  203 (615)
T 1pgu_A          137 GRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD-----DGSVVFYQG------PPFKFSASDRTHH  203 (615)
T ss_dssp             CSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEET-----TTEEEEEET------TTBEEEEEECSSS
T ss_pred             CCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeC-----CCcEEEEeC------CCcceeeeecccC
Confidence            7    6888888  556666665 788999999999997 5665544     456666764      3346677888899


Q ss_pred             C---CeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCcEeeee-ccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          147 G---RINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       147 ~---~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      .   .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .....|...|.+++|+ ++++|++++.||.|++||++
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT  282 (615)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred             CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence            9   9999999999 999999999999999999999988877 2111488999999999 99999999999999999999


Q ss_pred             CceEEEEEeeC-----CCeeEEEecCCCCcEEEeeCCcEE
Q 021925          222 TLELIKTYVTE-----RPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       222 ~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      +++.+..+...     ..+.++.|. +++++++++.++..
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i  321 (615)
T 1pgu_A          283 TSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTL  321 (615)
T ss_dssp             TTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCE
T ss_pred             CCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCE
Confidence            99999888743     567888885 88999999998873

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-32  Score=229.03  Aligned_cols=233  Identities=14%  Similarity=0.101  Sum_probs=193.2

Q ss_pred             cccccceEEEEEcCCCCEE-EEeeCCCceEEEEcC--CCeeeEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925            7 KGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFAD--NGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~--~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      .+|.+.|++++|+|++++| ++|+.||.|++||+.  +++.+..+.  .|...|.+++|+|++++|++++.||.+++|++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            4677889999999999996 889999999999999  888888776  57789999999999999999999999999999


Q ss_pred             CCCCeeE----EE-eeCCCceEEEEecC---CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE-EeccCCCeeEE
Q 021925           82 ETGAQLF----TF-NFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRA  152 (305)
Q Consensus        82 ~~~~~~~----~~-~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~  152 (305)
                      .+++...    .+ .+...+.+++|+|+   +.++++++.     ++.+.+|++..      .+.+.. +.+|...|.++
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-----d~~i~vwd~~~------~~~~~~~~~~h~~~v~~~  247 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-----DEHIKISHYPQ------CFIVDKWLFGHKHFVSSI  247 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-----TSCEEEEEESC------TTCEEEECCCCSSCEEEE
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-----CCcEEEEECCC------CceeeeeecCCCCceEEE
Confidence            8876543    33 37789999999999   888888765     56778888743      344444 56899999999


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeecccc----------------------CCccceEEEEEcCCCCEEEEEe
Q 021925          153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET----------------------GHKKTITSLAKAADGSHFLTGS  210 (305)
Q Consensus       153 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v~~~~~~~~~~~l~~~~  210 (305)
                      +|+ ++++|++++.|+.|++||+++++.+..+....                      .....|.+++|+|++++|++++
T Consensus       248 ~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          248 CCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             EEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             EEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence            999 99999999999999999999999887775210                      2345789999999999999999


Q ss_pred             -CCCeEEEEEc--CCc---eEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925          211 -LDKSAKLWDA--RTL---ELIKTYVTERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       211 -~dg~i~iwd~--~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~  251 (305)
                       .|+.|++||+  .++   +.+..+.....|.+++|+|++.++++++
T Consensus       327 ~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          327 EATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             TTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECC
T ss_pred             CCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEec
Confidence             8999999999  555   6677777568899999999654444333

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2e-31  Score=222.80  Aligned_cols=234  Identities=23%  Similarity=0.414  Sum_probs=201.8

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|.+.|.+++|+  ++.+++|+.||.|++||+.+++.+..+.+|...|.+++|+  ++.+++++.||.|++||++++
T Consensus       154 ~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~  229 (445)
T 2ovr_B          154 TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG  229 (445)
T ss_dssp             ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred             EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence            477999999999998  5699999999999999999999999999999999999996  558999999999999999999


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      +.+..+. +...+.++.+  ++..+++++.     ++.+.+|++..      .+....+.+|...|.++++  +++++++
T Consensus       230 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~v~~~~~--~~~~l~~  294 (445)
T 2ovr_B          230 QCLHVLMGHVAAVRCVQY--DGRRVVSGAY-----DFMVKVWDPET------ETCLHTLQGHTNRVYSLQF--DGIHVVS  294 (445)
T ss_dssp             CEEEEEECCSSCEEEEEE--CSSCEEEEET-----TSCEEEEEGGG------TEEEEEECCCSSCEEEEEE--CSSEEEE
T ss_pred             cEEEEEcCCcccEEEEEE--CCCEEEEEcC-----CCEEEEEECCC------CcEeEEecCCCCceEEEEE--CCCEEEE
Confidence            9888877 7788899888  5666666654     45667776543      4667788899999999999  7889999


Q ss_pred             eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe----eCCCeeEEE
Q 021925          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNAVT  239 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~  239 (305)
                      ++.||.|++||+++++.+..+.   +|...+.++.++  +++|++++.||.|++||+++++++..+.    +..+|.+++
T Consensus       295 ~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~  369 (445)
T 2ovr_B          295 GSLDTSIRVWDVETGNCIHTLT---GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ  369 (445)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC---CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE
T ss_pred             EeCCCeEEEEECCCCCEEEEEc---CCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE
Confidence            9999999999999999998887   788889888874  6699999999999999999999998886    677899999


Q ss_pred             ecCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925          240 MSPLLDHVCIGEPQTIKFMLLVYLFVLFLD  269 (305)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  269 (305)
                      |+  ++++++|+.++.     +++|+....
T Consensus       370 ~~--~~~l~s~~~dg~-----v~iwd~~~~  392 (445)
T 2ovr_B          370 FN--KNFVITSSDDGT-----VKLWDLKTG  392 (445)
T ss_dssp             EC--SSEEEEEETTSE-----EEEEETTTC
T ss_pred             EC--CCEEEEEeCCCe-----EEEEECCCC
Confidence            96  578999999987     555655433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-32  Score=222.56  Aligned_cols=214  Identities=19%  Similarity=0.294  Sum_probs=175.3

Q ss_pred             EecccccceEEEEEcC--CCCEEEEeeCCCceEEEEcCCC---------eeeEEecCCCcceEEEEEcCC--CcEEEEEe
Q 021925            5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG---------ERLGTYRGHNGAVWCCDVSRD--SMTLITGS   71 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~~---------~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~   71 (305)
                      .+.+|.++|++++|+|  ++++|++|+.||.|++||+.++         +.+..+..|.+.|.+++|+|+  +++|++++
T Consensus        52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  131 (351)
T 3f3f_A           52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG  131 (351)
T ss_dssp             EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence            3678999999999999  6999999999999999999887         567888899999999999999  99999999


Q ss_pred             CCCcEEEEecCCCCeeEEE--------------eeCCCceEEEEecC---CceEEEeCCcceeeeeeEEEEEeecccCCC
Q 021925           72 ADQTAKLWNVETGAQLFTF--------------NFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQ  134 (305)
Q Consensus        72 ~dg~v~vwd~~~~~~~~~~--------------~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (305)
                      .||.|++||+++++.+..+              .+...+.+++|+|+   +..++++....     .+..+...    ..
T Consensus       132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~~~----~~  202 (351)
T 3f3f_A          132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-----AIIYQRGK----DG  202 (351)
T ss_dssp             TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-----EEEEEECT----TS
T ss_pred             CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC-----cEEEEccC----CC
Confidence            9999999999888754332              24567899999996   77777776532     22222211    11


Q ss_pred             CCceEEEEeccCCCeeEEEEcCCC----CEEEEeeCCCcEEEEeCCCC--------------------------------
Q 021925          135 GGESVLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETG--------------------------------  178 (305)
Q Consensus       135 ~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~--------------------------------  178 (305)
                      .......+.+|...|.+++|+|++    ++|++++.||.|++||++.+                                
T Consensus       203 ~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
T 3f3f_A          203 KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS  282 (351)
T ss_dssp             CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------
T ss_pred             ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccc
Confidence            223466778899999999999998    89999999999999999865                                


Q ss_pred             --------------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          179 --------------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       179 --------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                                    +.+..+.   +|...|++++|+|++++|++++.||.|++||+.+++....+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          283 NTEEKAELQSNLQVELLSEHD---DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             --------CCSEEEEEEEEEC---TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             ccceeeeecccccccEEEEEe---cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence                          3333343   789999999999999999999999999999999876655443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.4e-31  Score=223.88  Aligned_cols=230  Identities=25%  Similarity=0.387  Sum_probs=201.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|...|.+++|+  ++.+++|+.||.|++||+.+++.+..+.+|...|.+++|  +++++++++.||.|++||++++
T Consensus       194 ~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~  269 (445)
T 2ovr_B          194 TLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE  269 (445)
T ss_dssp             EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT
T ss_pred             EECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC
Confidence            477899999999996  568999999999999999999999999999999999999  6789999999999999999999


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      +.+..+. +...+.++.+  ++..+++++.     ++.+.+|++.      ..+.+..+.+|...+.++.++  ++++++
T Consensus       270 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-----d~~i~i~d~~------~~~~~~~~~~~~~~v~~~~~~--~~~l~~  334 (445)
T 2ovr_B          270 TCLHTLQGHTNRVYSLQF--DGIHVVSGSL-----DTSIRVWDVE------TGNCIHTLTGHQSLTSGMELK--DNILVS  334 (445)
T ss_dssp             EEEEEECCCSSCEEEEEE--CSSEEEEEET-----TSCEEEEETT------TCCEEEEECCCCSCEEEEEEE--TTEEEE
T ss_pred             cEeEEecCCCCceEEEEE--CCCEEEEEeC-----CCeEEEEECC------CCCEEEEEcCCcccEEEEEEe--CCEEEE
Confidence            9888887 7788999988  6677776654     4566777763      346778888999999888875  679999


Q ss_pred             eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE------eeCCCeeE
Q 021925          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY------VTERPVNA  237 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~v~~  237 (305)
                      |+.||.|++||+++++.+..+.....|...|++++|+  +++|++|+.||.|++||+++++.+..+      .+...|.+
T Consensus       335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~  412 (445)
T 2ovr_B          335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR  412 (445)
T ss_dssp             EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE
Confidence            9999999999999999998887555588999999996  579999999999999999999999888      36778999


Q ss_pred             EEecCCCCcEEEeeCCcE
Q 021925          238 VTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~  255 (305)
                      ++|+|++.++++|+.++.
T Consensus       413 ~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          413 IRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             EEECSSEEEEEEECSSSS
T ss_pred             EEecCCEEEEEEcccCCC
Confidence            999999999999998885

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-33  Score=251.53  Aligned_cols=254  Identities=12%  Similarity=0.114  Sum_probs=184.3

Q ss_pred             ecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCeeeEEecCC------------------CcceEEEEEcCCCcE
Q 021925            6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGH------------------NGAVWCCDVSRDSMT   66 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~------------------~~~v~~i~~~~~~~~   66 (305)
                      +.+|.++|++++|+|+ +..+++|+.||.| +||+++++.+..+..|                  ...|.+++|+|+|++
T Consensus       147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~  225 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH  225 (902)
T ss_dssp             SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred             cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence            4789999999999995 5789999999999 9999999988888765                  477999999999999


Q ss_pred             EEEEeCCCcEEEEecCCCCeeEEEe-------------------eCCCceEEEEec----CC-ceEEEeCCc------ce
Q 021925           67 LITGSADQTAKLWNVETGAQLFTFN-------------------FDSPARSVDFAV----GD-KLAVITTDP------FM  116 (305)
Q Consensus        67 l~s~~~dg~v~vwd~~~~~~~~~~~-------------------~~~~v~~~~~~~----~~-~~~~~~~~~------~~  116 (305)
                      |++++.||+|++||+++++++....                   +...|.+++|++    ++ .++++++..      ..
T Consensus       226 lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v  305 (902)
T 2oaj_A          226 IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSL  305 (902)
T ss_dssp             EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCE
T ss_pred             EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceE
Confidence            9999999999999999988775421                   123688999965    33 345554221      11


Q ss_pred             -eee----------------------------------------------------------------eeEEEEEeeccc
Q 021925          117 -ELN----------------------------------------------------------------SAIHVKRIARDP  131 (305)
Q Consensus       117 -~~~----------------------------------------------------------------~~~~~~~~~~~~  131 (305)
                       .+.                                                                +.+..|++....
T Consensus       306 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~  385 (902)
T 2oaj_A          306 TMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGI  385 (902)
T ss_dssp             EEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCC
Confidence             000                                                                001111110000


Q ss_pred             CCCC-----------CceE------------------------EEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 021925          132 ADQG-----------GESV------------------------LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE  176 (305)
Q Consensus       132 ~~~~-----------~~~~------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  176 (305)
                      ....           ...+                        ..+.+|...+.+++|+|++++|++|+.|++|++||+.
T Consensus       386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~  465 (902)
T 2oaj_A          386 FTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDAS  465 (902)
T ss_dssp             EECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESS
T ss_pred             cccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECC
Confidence            0000           0000                        0123444455566778999999999999999999998


Q ss_pred             CCcEee--eecc------ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce------------------------
Q 021925          177 TGKLLK--ESDK------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE------------------------  224 (305)
Q Consensus       177 ~~~~~~--~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------------------  224 (305)
                      ++....  .+..      ..+|...|++++|+|++++||+|+.||+|++||+.+++                        
T Consensus       466 ~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (902)
T 2oaj_A          466 HGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN  545 (902)
T ss_dssp             CCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred             CccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccC
Confidence            874211  1110      01688899999999999999999999999999998662                        


Q ss_pred             ---------------------EEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          225 ---------------------LIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       225 ---------------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                                           ++..+. |..+|++++|+|+| +||+|+.|+.     +++|+.
T Consensus       546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~t-----v~lwd~  603 (902)
T 2oaj_A          546 TNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGS-----LMLIDR  603 (902)
T ss_dssp             SSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSE-----EEEEET
T ss_pred             CccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCc-----EEEEEC
Confidence                                 355565 88999999999999 9999999997     455554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.6e-33  Score=220.47  Aligned_cols=206  Identities=20%  Similarity=0.283  Sum_probs=167.0

Q ss_pred             EecccccceEEEEEcC--CCCEEEEeeCCCceEEEEcCCC--eeeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEE
Q 021925            5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKL   78 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~v   78 (305)
                      .+.+|.++|++++|+|  ++++|++|+.|++|++||++++  +....+.+|...|.+++|+|+  +.+|++++.||+|++
T Consensus        52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l  131 (316)
T 3bg1_A           52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL  131 (316)
T ss_dssp             EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred             EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence            4789999999999986  4899999999999999999887  356678899999999999997  789999999999999


Q ss_pred             EecCCCCeeEE---E-eeCCCceEEEEecCC-----------------ceEEEeCCcceeeeeeEEEEEeecccCCCCCc
Q 021925           79 WNVETGAQLFT---F-NFDSPARSVDFAVGD-----------------KLAVITTDPFMELNSAIHVKRIARDPADQGGE  137 (305)
Q Consensus        79 wd~~~~~~~~~---~-~~~~~v~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (305)
                      ||++++.....   + .+...+.+++|+|+.                 ..+++++.     ++.+++|+....   ...+
T Consensus       132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~-----D~~v~lWd~~~~---~~~~  203 (316)
T 3bg1_A          132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC-----DNLIKLWKEEED---GQWK  203 (316)
T ss_dssp             EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBT-----TSBCCEEEECTT---SCEE
T ss_pred             EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecC-----CCeEEEEEeCCC---Cccc
Confidence            99987643221   1 156788899999873                 45665544     556777776321   1113


Q ss_pred             eEEEEeccCCCeeEEEEcCCC----CEEEEeeCCCcEEEEeCCCCc----EeeeeccccCCccceEEEEEcCCCCEEEEE
Q 021925          138 SVLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETGK----LLKESDKETGHKKTITSLAKAADGSHFLTG  209 (305)
Q Consensus       138 ~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  209 (305)
                      ....+.+|...|.+++|+|++    ++|++++.||+|++||+++..    ....+.   .|...|.+++|+|++++|+++
T Consensus       204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~---~~~~~v~~v~~sp~g~~las~  280 (316)
T 3bg1_A          204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH---KFNDVVWHVSWSITANILAVS  280 (316)
T ss_dssp             EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE---ECSSCEEEEEECTTTCCEEEE
T ss_pred             eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh---cCCCcEEEEEEcCCCCEEEEE
Confidence            556678999999999999986    789999999999999997631    112232   578899999999999999999


Q ss_pred             eCCCeEEEEEcC
Q 021925          210 SLDKSAKLWDAR  221 (305)
Q Consensus       210 ~~dg~i~iwd~~  221 (305)
                      +.||+|++|+..
T Consensus       281 ~~D~~v~lw~~~  292 (316)
T 3bg1_A          281 GGDNKVTLWKES  292 (316)
T ss_dssp             ESSSCEEEEEEC
T ss_pred             cCCCeEEEEEEC
Confidence            999999999976

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.4e-31  Score=220.66  Aligned_cols=240  Identities=17%  Similarity=0.298  Sum_probs=190.7

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      ++.|+||++ +.||+|. |++|+|||..+++....+.  +|...|++++|+|+|++|++|+.||.|++||+++++.+..+
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~  185 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  185 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence            677999976 4777765 9999999999998877654  67788999999999999999999999999999999988887


Q ss_pred             e-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925           91 N-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (305)
Q Consensus        91 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  169 (305)
                      . +...+.++.+  ++..+++++.     +..+..++..     .....+..+.+|...+..+.++|+++++++++.|+.
T Consensus       186 ~~h~~~v~~~s~--~~~~l~sgs~-----d~~i~~~d~~-----~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~  253 (420)
T 4gga_A          186 TSHSARVGSLSW--NSYILSSGSR-----SGHIHHHDVR-----VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL  253 (420)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEEET-----TSEEEEEETT-----SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eCCCCceEEEee--CCCEEEEEeC-----CCceeEeeec-----ccceeeEEecccccceeeeeecCCCCeeeeeecccc
Confidence            7 6666766665  4567776654     3444455443     233567788999999999999999999999999999


Q ss_pred             EEEEeCCCCcEee-eeccccCCccceEEEEEcCCCC-EEEE--EeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC
Q 021925          170 VRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGS-HFLT--GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD  245 (305)
Q Consensus       170 i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  245 (305)
                      +++||..+++... .+.....|...|.+++|+|++. .+++  |+.|++|++||+++++++..+.....+.++.|+|+++
T Consensus       254 v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~  333 (420)
T 4gga_A          254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK  333 (420)
T ss_dssp             EEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTT
T ss_pred             ceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCC
Confidence            9999998765321 1112236889999999999654 4554  4579999999999999999999888999999999999


Q ss_pred             cEEEee--CCcEEEEEEeehhhhhhhhh
Q 021925          246 HVCIGE--PQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       246 ~l~~~~--~~~~~~~~~~~~~~~~~~~~  271 (305)
                      .+++++  .++.     +++|+......
T Consensus       334 ~lv~~sg~~d~~-----I~iwd~~~~~~  356 (420)
T 4gga_A          334 ELISGHGFAQNQ-----LVIWKYPTMAK  356 (420)
T ss_dssp             EEEEEECTTTCC-----EEEEETTTCCE
T ss_pred             eEEEEEecCCCE-----EEEEECCCCcE
Confidence            988875  4555     55665544333

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-32  Score=225.58  Aligned_cols=232  Identities=9%  Similarity=0.080  Sum_probs=183.0

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-----------------------------eeEEec-CCCcceEE
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----------------------------RLGTYR-GHNGAVWC   57 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-----------------------------~~~~~~-~~~~~v~~   57 (305)
                      .-...|.+++|+|||+++|+++.|++|+  |...++                             ....+. .|...|.+
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~   90 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV   90 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence            4467899999999999999999999995  433322                             111222 46788999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC-----CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC
Q 021925           58 CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-----PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA  132 (305)
Q Consensus        58 i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (305)
                      ++|+|+|.+||+++.||.|++||.++  ++..+.+..     .+.+++|+|+++++++++.     ++.+.+|++.....
T Consensus        91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~-----DGtVkIWd~~~~~l  163 (588)
T 2j04_A           91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNE-----DGELQFFSIRKNSE  163 (588)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEET-----TSEEEEEECCCCTT
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcC-----CCEEEEEECCCCcc
Confidence            99999999999999999999999644  555545333     4999999999999999987     77788888764211


Q ss_pred             CCC-CceEEEE----eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe---eeeccccCCccceEEEEEcCCCC
Q 021925          133 DQG-GESVLIL----KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL---KESDKETGHKKTITSLAKAADGS  204 (305)
Q Consensus       133 ~~~-~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~  204 (305)
                      .+. .-.+..+    .+|...|.+++|+|+|  +++++.|+.|++||+..++..   +.+.  .+|...|.+++|+  |+
T Consensus       164 ~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~--~~h~~~V~svaFs--g~  237 (588)
T 2j04_A          164 NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ--NASRRKITDLKIV--DY  237 (588)
T ss_dssp             TCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE--CCCSSCCCCEEEE--TT
T ss_pred             ccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec--ccccCcEEEEEEE--CC
Confidence            000 0134555    6677899999999999  888999999999999887632   3342  1577899999999  68


Q ss_pred             EEEEEeCCCeEEEEEcCCceE-EEEEeeCCCeeEEEe--cCCCCcEEEeeCCcE
Q 021925          205 HFLTGSLDKSAKLWDARTLEL-IKTYVTERPVNAVTM--SPLLDHVCIGEPQTI  255 (305)
Q Consensus       205 ~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~~--~~~~~~l~~~~~~~~  255 (305)
                      .||+++ +++|++||+.+++. ...+.|...+.+++|  +|++..+++++.+|.
T Consensus       238 ~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          238 KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred             EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence            899887 69999999998887 444468899999999  999999999998887

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-32  Score=224.44  Aligned_cols=225  Identities=10%  Similarity=0.109  Sum_probs=177.4

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc-----ceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG-----AVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      +|...|.+++|||+|+.||+++.||.|++||.++  .+..+. |..     .|.+++|+|||++|++|+.||+|++||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            6788899999999999999999999999999543  666667 665     49999999999999999999999999999


Q ss_pred             CCCe-------eEEEe-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCCe
Q 021925           83 TGAQ-------LFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRI  149 (305)
Q Consensus        83 ~~~~-------~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i  149 (305)
                      ++..       +..+.     +...|.+++|+|++ +++++.      +..+++|++....   ..+....+ .+|...|
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~------D~tVrlWd~~~~~---~~~~~~tL~~~h~~~V  229 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALS------NNSVFSMTVSASS---HQPVSRMIQNASRRKI  229 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEET------TCCEEEECCCSSS---SCCCEEEEECCCSSCC
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeC------CCeEEEEECCCCc---cccceeeecccccCcE
Confidence            8753       45553     34699999999999 555444      5666777664321   11123455 4788999


Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE--cCCCCEEEEEeCCCeEEEEEcCCc----
Q 021925          150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGSLDKSAKLWDARTL----  223 (305)
Q Consensus       150 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~----  223 (305)
                      .+++|+  ++.||+++ ++.|++||+.+++......   +|...+..++|  +|++..|++++.||+ ++|.....    
T Consensus       230 ~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~---gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~sp  302 (588)
T 2j04_A          230 TDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT---GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTA  302 (588)
T ss_dssp             CCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC---SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEEC
T ss_pred             EEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc---CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECC
Confidence            999999  68899887 6999999999877644333   69999999999  999999999999999 99987421    


Q ss_pred             -------------------eEEEEEeeCCCeeEEEecCCCCcEEEeeC
Q 021925          224 -------------------ELIKTYVTERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       224 -------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                                         +.+..+.+...|.+++|+|||+.+|+++.
T Consensus       303 d~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          303 DNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             CCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             CceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence                               11122223334899999999999998864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-31  Score=218.03  Aligned_cols=214  Identities=17%  Similarity=0.265  Sum_probs=178.3

Q ss_pred             EecccccceEEEEEcCC--CCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEE
Q 021925            5 LMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKL   78 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~v   78 (305)
                      .+.+|.++|++++|+|+  +++|++|+.||.|++||+.+++  .+..+..|...|.+++|+|+  +++|++++.||.|++
T Consensus        50 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v  129 (379)
T 3jrp_A           50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  129 (379)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             EecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEE
Confidence            57899999999999987  9999999999999999999987  77788889999999999998  999999999999999


Q ss_pred             EecCCCCeeE--EE-eeCCCceEEEEec-------------CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925           79 WNVETGAQLF--TF-NFDSPARSVDFAV-------------GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (305)
Q Consensus        79 wd~~~~~~~~--~~-~~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (305)
                      ||++++....  .+ .+...+.+++|+|             ++..+++++.     ++.+.+|++....  ........+
T Consensus       130 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~--~~~~~~~~~  202 (379)
T 3jrp_A          130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----DNLVKIWKYNSDA--QTYVLESTL  202 (379)
T ss_dssp             EECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET-----TSCEEEEEEETTT--TEEEEEEEE
T ss_pred             EecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC-----CCeEEEEEecCCC--cceeeEEEE
Confidence            9998874332  22 3788999999999             5787877765     4567778776432  112355677


Q ss_pred             eccCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925          143 KGPQGRINRAVWGPL---NRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (305)
Q Consensus       143 ~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  217 (305)
                      .+|...|.+++|+|+   +++|++++.||.|++||++++..  .........|...|++++|+|++++|++++.||.|++
T Consensus       203 ~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i  282 (379)
T 3jrp_A          203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL  282 (379)
T ss_dssp             CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEE
T ss_pred             ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEE
Confidence            889999999999999   89999999999999999998642  1122222358889999999999999999999999999


Q ss_pred             EEcCCceE
Q 021925          218 WDARTLEL  225 (305)
Q Consensus       218 wd~~~~~~  225 (305)
                      ||++....
T Consensus       283 w~~~~~~~  290 (379)
T 3jrp_A          283 WKENLEGK  290 (379)
T ss_dssp             EEEEETTE
T ss_pred             EeCCCCCc
Confidence            99985533

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-32  Score=221.53  Aligned_cols=219  Identities=9%  Similarity=0.007  Sum_probs=174.8

Q ss_pred             EcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC---------CCCeeE
Q 021925           18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE---------TGAQLF   88 (305)
Q Consensus        18 ~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~---------~~~~~~   88 (305)
                      +.++++.+++|+.||.|++||+.+++.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +++.+.
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            34578899999999999999999999888876  567888889988   9999999999999655         555455


Q ss_pred             EEe--eCCCceEEEEec--CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCCeeEEEEcCCCCEEEE
Q 021925           89 TFN--FDSPARSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        89 ~~~--~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      ...  +...+.+++++|  ++.++++++.     ++.+.+|++..      .+..... ..+...+.+++|+|++++|++
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~~wd~~~------~~~~~~~~~~~~~~i~~~~~~pdg~~las  187 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADN-----RGTIGFQSYED------DSQYIVHSAKSDVEYSSGVLHKDSLLLAL  187 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEET-----TCCEEEEESSS------SCEEEEECCCSSCCCCEEEECTTSCEEEE
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeC-----CCcEEEEECCC------CcEEEEEecCCCCceEEEEECCCCCEEEE
Confidence            554  447799999999  9999987765     56677777643      2334444 345668999999999999999


Q ss_pred             eeCCCcEEEEeCCCCcEe-eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe----eCCCee--
Q 021925          164 AGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVN--  236 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~--  236 (305)
                      |+.||.|++||+++++.+ ..+..  +|..+|++++|+|++.+|++++ |+.|++||+++++.+..+.    +..++.  
T Consensus       188 g~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (343)
T 3lrv_A          188 YSPDGILDVYNLSSPDQASSRFPV--DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV  264 (343)
T ss_dssp             ECTTSCEEEEESSCTTSCCEECCC--CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred             EcCCCEEEEEECCCCCCCccEEec--cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccce
Confidence            999999999999998877 66651  3899999999999999999999 5599999999887665443    223343  


Q ss_pred             EEEecCCCCcEEEeeC-CcE
Q 021925          237 AVTMSPLLDHVCIGEP-QTI  255 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~-~~~  255 (305)
                      +++|+|++++|++++. ++.
T Consensus       265 ~~~~~~~g~~l~~~s~~d~~  284 (343)
T 3lrv_A          265 TYDIDDSGKNMIAYSNESNS  284 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTE
T ss_pred             EEEECCCCCEEEEecCCCCc
Confidence            6999999999999877 665

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.6e-30  Score=216.63  Aligned_cols=239  Identities=11%  Similarity=0.025  Sum_probs=199.3

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETG   84 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~   84 (305)
                      +.+|.+.|.+++|+|+++++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.++ +++.|+.|++||++++
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  244 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK  244 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence            458899999999999999999999999999999999999999998999999999999998885 5557999999999999


Q ss_pred             CeeEEEeeCCCceEEEEecCCceEEEeCCccee---eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFME---LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      +.+..+.....+.+++++|++..++++......   .++.+.++++..      .+... ...+...+.+++|+|+++.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~------~~~~~-~~~~~~~~~~~~~~~~g~~l  317 (433)
T 3bws_A          245 LEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK------EKLID-TIGPPGNKRHIVSGNTENKI  317 (433)
T ss_dssp             EEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT------TEEEE-EEEEEECEEEEEECSSTTEE
T ss_pred             cEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC------CcEEe-eccCCCCcceEEECCCCCEE
Confidence            988888877789999999999888776531111   134555665532      22332 33556688999999999755


Q ss_pred             -EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC---------------CCeEEEEEcCCceE
Q 021925          162 -ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---------------DKSAKLWDARTLEL  225 (305)
Q Consensus       162 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~  225 (305)
                       ++++.|+.|++||+.+++.+..+.    +...+.+++|+|++++|++++.               ||.|++||+.+++.
T Consensus       318 ~~~~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~  393 (433)
T 3bws_A          318 YVSDMCCSKIEVYDLKEKKVQKSIP----VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV  393 (433)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred             EEEecCCCEEEEEECCCCcEEEEec----CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence             566889999999999998887775    6678999999999999888876               57999999999999


Q ss_pred             EEEEeeCCCeeEEEecCCCCcEEEeeC-CcE
Q 021925          226 IKTYVTERPVNAVTMSPLLDHVCIGEP-QTI  255 (305)
Q Consensus       226 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~  255 (305)
                      +..+.....+.+++|+|++++|++++. ++.
T Consensus       394 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~  424 (433)
T 3bws_A          394 KEFWEAGNQPTGLDVSPDNRYLVISDFLDHQ  424 (433)
T ss_dssp             EEEEECSSSEEEEEECTTSCEEEEEETTTTE
T ss_pred             EEEecCCCCCceEEEcCCCCEEEEEECCCCe
Confidence            999887788999999999999998875 665

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=5.9e-30  Score=210.36  Aligned_cols=240  Identities=10%  Similarity=0.058  Sum_probs=194.4

Q ss_pred             ecccccceEEEEEcCCCCEE-EEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEE-EeCCCcEEEEecCC
Q 021925            6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT-GSADQTAKLWNVET   83 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~dg~v~vwd~~~   83 (305)
                      +.+| ..+.+++|+|+|+++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|+. ++.++.|++||+.+
T Consensus        28 ~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~  105 (391)
T 1l0q_A           28 IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS  105 (391)
T ss_dssp             EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC
Confidence            4445 458999999999977 667789999999999999998888555 8999999999998754 55679999999999


Q ss_pred             CCeeEEEeeCCCceEEEEecCCceEE-EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE-
Q 021925           84 GAQLFTFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-  161 (305)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-  161 (305)
                      ++.+..+.....+.+++|+|+++.++ ++..     .+.+.+|++.      ..+....+..+ ..+.+++|+|+++++ 
T Consensus       106 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~------~~~~~~~~~~~-~~~~~~~~~~dg~~l~  173 (391)
T 1l0q_A          106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNNG-----DKTVSVINTV------TKAVINTVSVG-RSPKGIAVTPDGTKVY  173 (391)
T ss_dssp             TEEEEEEECSSSEEEEEECTTSSEEEEEETT-----TTEEEEEETT------TTEEEEEEECC-SSEEEEEECTTSSEEE
T ss_pred             CeEEEEEeCCCCcceEEECCCCCEEEEEeCC-----CCEEEEEECC------CCcEEEEEecC-CCcceEEECCCCCEEE
Confidence            99998888888899999999998774 4443     3455666553      23445555544 456999999999887 


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe---CCCeEEEEEcCCceEEEEEeeCCCeeEE
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLELIKTYVTERPVNAV  238 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~v~~~  238 (305)
                      ++++.++.|++||+++++....+.    +...+.+++|+|++++|++++   .++.|++||+++++.+..+.....+.++
T Consensus       174 ~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  249 (391)
T 1l0q_A          174 VANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGI  249 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEE
Confidence            567788999999999998887775    566889999999999999888   6899999999999999888876778999


Q ss_pred             EecCCCCcEEEe-eCCcEEEEEEeehhhhhh
Q 021925          239 TMSPLLDHVCIG-EPQTIKFMLLVYLFVLFL  268 (305)
Q Consensus       239 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~  268 (305)
                      +|+|+++.++++ +.++.     +++|+...
T Consensus       250 ~~s~dg~~l~~s~~~d~~-----v~v~d~~~  275 (391)
T 1l0q_A          250 AVTPDGKKVYVALSFXNT-----VSVIDTAT  275 (391)
T ss_dssp             EECTTSSEEEEEETTTTE-----EEEEETTT
T ss_pred             EEccCCCEEEEEcCCCCE-----EEEEECCC
Confidence            999999988554 55665     55555543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-31  Score=214.42  Aligned_cols=230  Identities=9%  Similarity=-0.013  Sum_probs=179.1

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcC---------CCeeeEEec-CCCcceEEEEEcC--CCcEEEEEeCCCcEE
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---------NGERLGTYR-GHNGAVWCCDVSR--DSMTLITGSADQTAK   77 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~---------~~~~~~~~~-~~~~~v~~i~~~~--~~~~l~s~~~dg~v~   77 (305)
                      ...|.++.|+|+   +++++.|++|++|+..         +++.+..+. +|.++|.+++|+|  +++++++++.||+|+
T Consensus        76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~  152 (343)
T 3lrv_A           76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIG  152 (343)
T ss_dssp             EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEE
T ss_pred             cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEE
Confidence            356777788887   9999999999999665         445444444 6778999999999  999999999999999


Q ss_pred             EEecCCCCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceE-EEEec-cCCCeeEEE
Q 021925           78 LWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKG-PQGRINRAV  153 (305)
Q Consensus        78 vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~  153 (305)
                      +||+++++......  +...+.+++|+|++.++++++.     ++.+.+|++...      +.. ..+.. |.+.|.+++
T Consensus       153 ~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~-----dg~i~iwd~~~~------~~~~~~~~~~h~~~v~~l~  221 (343)
T 3lrv_A          153 FQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP-----DGILDVYNLSSP------DQASSRFPVDEEAKIKEVK  221 (343)
T ss_dssp             EEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT-----TSCEEEEESSCT------TSCCEECCCCTTSCEEEEE
T ss_pred             EEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC-----CCEEEEEECCCC------CCCccEEeccCCCCEEEEE
Confidence            99999998876653  4557999999999999998765     567888887532      333 55666 999999999


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceE--EEEEcCCCCEEEEEeC-CCeEEEEEcCCceEEEEEe
Q 021925          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT--SLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~  230 (305)
                      |+|++.+|++++ |+.|++||+++++.+..+.....|...+.  +++|+|++++|++++. |+.+++|++.+....... 
T Consensus       222 fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-  299 (343)
T 3lrv_A          222 FADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-  299 (343)
T ss_dssp             ECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-
T ss_pred             EeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-
Confidence            999999999999 55999999999887766653323434444  6999999999999998 999999999765433322 


Q ss_pred             eCCCeeEEEecC---CCCcEEEeeCCcEEE
Q 021925          231 TERPVNAVTMSP---LLDHVCIGEPQTIKF  257 (305)
Q Consensus       231 ~~~~v~~~~~~~---~~~~l~~~~~~~~~~  257 (305)
                        .++..++|.|   +.+.+++++.++...
T Consensus       300 --~~~~~~~~~~~~~~~~~l~~~~~d~~~~  327 (343)
T 3lrv_A          300 --DEESALCLQSDTADFTDMDVVCGDGGIA  327 (343)
T ss_dssp             --EEEEECCC----CCCCEEEEEEETTEEE
T ss_pred             --cCceeEecCccccccceeEEEecCCceE
Confidence              5577888888   888888888887643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.8e-30  Score=205.47  Aligned_cols=242  Identities=16%  Similarity=0.272  Sum_probs=189.1

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      .++|+||+++ +||+| .|++|+|||+++++.+..+.  +|...|.+++|+|++++|++|+.||+|++||+++++.+..+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            5789999986 77765 59999999999999887665  67888999999999999999999999999999999988887


Q ss_pred             e-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925           91 N-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (305)
Q Consensus        91 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  169 (305)
                      . +...+.  .+++++..++++...     .....+...     .....+..+.+|...+..+.++++++++++++.||.
T Consensus       106 ~~h~~~~~--~~~~~~~~l~s~~~~-----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  173 (318)
T 4ggc_A          106 TSHSARVG--SLSWNSYILSSGSRS-----GHIHHHDVR-----VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL  173 (318)
T ss_dssp             ECCSSCEE--EEEEETTEEEEEETT-----SEEEEEETT-----SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cCccceEE--EeecCCCEEEEEecC-----CceEeeecC-----CCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc
Confidence            7 444444  455566677766542     223333322     234567788899999999999999999999999999


Q ss_pred             EEEEeCCCCcEeeee-ccccCCccceEEEEEcCCCCEE---EEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC
Q 021925          170 VRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHF---LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD  245 (305)
Q Consensus       170 i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  245 (305)
                      |++||+++++..... .....+...|.+++++|++..+   ++++.++.|++||.+.........+...+..+.|+|+++
T Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~  253 (318)
T 4ggc_A          174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK  253 (318)
T ss_dssp             EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTT
T ss_pred             eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccccc
Confidence            999999886543221 1223577889999999976543   467789999999999999888888889999999999999


Q ss_pred             cEEEee--CCcEEEEEEeehhhhhhhhhhh
Q 021925          246 HVCIGE--PQTIKFMLLVYLFVLFLDILFY  273 (305)
Q Consensus       246 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~  273 (305)
                      .+++++  .++.     +++|+........
T Consensus       254 ~~~~~sg~~d~~-----i~iwd~~~~~~~~  278 (318)
T 4ggc_A          254 ELISGHGFAQNQ-----LVIWKYPTMAKVA  278 (318)
T ss_dssp             EEEEEECTTTCC-----EEEEETTTCCEEE
T ss_pred             ceEEEEEcCCCE-----EEEEECCCCcEEE
Confidence            988764  4555     6666655444443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.6e-31  Score=207.58  Aligned_cols=209  Identities=11%  Similarity=0.071  Sum_probs=153.4

Q ss_pred             cccceEEEEEcCC----CCEEEEeeC--------------------CCceEEEEc-CCCeeeEEecCCCcceEEEEEcC-
Q 021925            9 HERPLTYLKYNKD----GDLLFSCAK--------------------DHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSR-   62 (305)
Q Consensus         9 h~~~v~~~~~~~~----~~~l~s~~~--------------------dg~v~iw~~-~~~~~~~~~~~~~~~v~~i~~~~-   62 (305)
                      |...|++++++||    ++.+++++.                    |+.|++|++ ++++.+..+.+|...+..++|+| 
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~  189 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV  189 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence            3456778888888    777776553                    788888888 45777777778888888888888 


Q ss_pred             --CCcEEEEEeCCCcEEEEecCCCCeeEEEee----CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCC
Q 021925           63 --DSMTLITGSADQTAKLWNVETGAQLFTFNF----DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG  136 (305)
Q Consensus        63 --~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (305)
                        ++.+|++++.|++|+|||+++++++.++..    ...+.+++|+|++..+++...+                      
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~----------------------  247 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHP----------------------  247 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------------------
T ss_pred             CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccC----------------------
Confidence              668999999999999999999999999872    2356677899988887765420                      


Q ss_pred             ceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec--cccCCccceEEEEEcCCCCEEEEEeCCCe
Q 021925          137 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD--KETGHKKTITSLAKAADGSHFLTGSLDKS  214 (305)
Q Consensus       137 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  214 (305)
                                .         ....+++|+.|++|++||..+++.+..+.  ...+|...+.+..++  +.++++++.|++
T Consensus       248 ----------~---------~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgT  306 (356)
T 2w18_A          248 ----------C---------AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGT  306 (356)
T ss_dssp             -----------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSC
T ss_pred             ----------C---------CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCc
Confidence                      0         01247899999999999999998876542  123565555444443  789999999999


Q ss_pred             EEEEEcCCceEEEEEe-eCCCe-eEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925          215 AKLWDARTLELIKTYV-TERPV-NAVTMSPLLDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       215 i~iwd~~~~~~~~~~~-~~~~v-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                      |+|||+.+++++.++. |...+ .+++|+|+|++|++|+.|+.     +++|+
T Consensus       307 IkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-----IklWd  354 (356)
T 2w18_A          307 IAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-----IFVYH  354 (356)
T ss_dssp             EEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC-----EEEEE
T ss_pred             EEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-----EEEec
Confidence            9999999999999997 55544 46899999999999999997     66665

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.98  E-value=4.5e-30  Score=211.97  Aligned_cols=218  Identities=14%  Similarity=0.233  Sum_probs=172.1

Q ss_pred             cccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC---CcEEEEEeCCCcEEEEecC
Q 021925            7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         7 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+|...|.+++|+| ++++|++++.||.|++||+.+++....+. +...+.++.|+|.   +.++++++.||.|++||++
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            36999999999999 78899999999999999999999888887 7888999999984   4599999999999999999


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCce-EEEeCCcceeeeeeEEEEEeecccCC----------CCCceEEEEeccCCCee
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDPAD----------QGGESVLILKGPQGRIN  150 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~i~  150 (305)
                      +++.+..+. +...+.+++|+|++.. +++++.     ++.+.+|++......          ...........|...|.
T Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  249 (408)
T 4a11_B          175 SGSCSHILQGHRQEILAVSWSPRYDYILATASA-----DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN  249 (408)
T ss_dssp             SSCCCEEECCCCSCEEEEEECSSCTTEEEEEET-----TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred             CcceeeeecCCCCcEEEEEECCCCCcEEEEEcC-----CCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence            999888887 7889999999999984 655543     456677776432200          00111122257889999


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeee--------------------------------------------cc
Q 021925          151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES--------------------------------------------DK  186 (305)
Q Consensus       151 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------------------------------~~  186 (305)
                      +++|+|++++|++++.||.|++||+++++.....                                            ..
T Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~  329 (408)
T 4a11_B          250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM  329 (408)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceee
Confidence            9999999999999999999999999875432211                                            11


Q ss_pred             ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      ..+|...|++++|+|++++|++++.||.|++||+++++++....
T Consensus       330 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          330 LKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred             eccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence            13688999999999999999999999999999999998877655

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.98  E-value=7.9e-30  Score=205.56  Aligned_cols=213  Identities=19%  Similarity=0.239  Sum_probs=166.2

Q ss_pred             CCeeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCCCe-----eEEEe-eCCCceEEEEecCCceEEEeCC
Q 021925           41 NGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQ-----LFTFN-FDSPARSVDFAVGDKLAVITTD  113 (305)
Q Consensus        41 ~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~~~-----~~~~~-~~~~v~~~~~~~~~~~~~~~~~  113 (305)
                      +.+...++++|.+.|++++|+|+ +++|+||+.||+|+|||+.+.+.     ...+. +...|.+++|+|++.++++++.
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            34566789999999999999997 68999999999999999987643     33333 6789999999999999888765


Q ss_pred             cceee-e------------------------------------eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925          114 PFMEL-N------------------------------------SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus       114 ~~~~~-~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      ..... .                                    +.+.+|+.     ...........+|...+..++|++
T Consensus       107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~-----~~~~~~~~~~~~~~~~v~~~~~~~  181 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-----LGVCKYTVQDESHSEWVSCVRFSP  181 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-----TSCEEEEECSSSCSSCEEEEEECS
T ss_pred             cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe-----CCCceEEEEeccccCcccceEEcc
Confidence            32111 0                                    00111110     011122233456788999999998


Q ss_pred             CC--CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCC
Q 021925          157 LN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP  234 (305)
Q Consensus       157 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  234 (305)
                      ++  .++++++.|+.|++||+++++.+..+.   +|...|++++|+|++++|++|+.||.|++||+++.+++..+.+...
T Consensus       182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  258 (340)
T 4aow_A          182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHI---GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI  258 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCceeeEec---CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce
Confidence            75  578899999999999999999988887   7999999999999999999999999999999999999999998889


Q ss_pred             eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          235 VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       235 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      +.+++|+|++.++++ +.++.     +++|+..
T Consensus       259 v~~~~~~~~~~~~~~-~~d~~-----i~iwd~~  285 (340)
T 4aow_A          259 INALCFSPNRYWLCA-ATGPS-----IKIWDLE  285 (340)
T ss_dssp             EEEEEECSSSSEEEE-EETTE-----EEEEETT
T ss_pred             EEeeecCCCCceeec-cCCCE-----EEEEECC
Confidence            999999999865554 45555     4555543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=8.8e-30  Score=211.86  Aligned_cols=206  Identities=17%  Similarity=0.298  Sum_probs=173.6

Q ss_pred             EecccccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCee-------eEEecCCCcceEEEEEcC-CCcEEEEEeCCCc
Q 021925            5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGER-------LGTYRGHNGAVWCCDVSR-DSMTLITGSADQT   75 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~-------~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~   75 (305)
                      .+.+|...|++++|+|+++ +|++|+.||.|++|++.++..       ...+.+|...|.+++|+| ++..|++++.||.
T Consensus       176 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~  255 (430)
T 2xyi_A          176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK  255 (430)
T ss_dssp             EEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             EecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence            5789999999999999988 999999999999999987422       456778999999999999 6789999999999


Q ss_pred             EEEEecCCC---CeeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCee
Q 021925           76 AKLWNVETG---AQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (305)
Q Consensus        76 v~vwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (305)
                      |++||++++   +.+..+. +...+.+++|+|++. ++++++.     ++.+.+|++...     ..++..+..|...|.
T Consensus       256 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~-----dg~v~vwd~~~~-----~~~~~~~~~h~~~v~  325 (430)
T 2xyi_A          256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA-----DKTVALWDLRNL-----KLKLHSFESHKDEIF  325 (430)
T ss_dssp             EEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEET-----TSEEEEEETTCT-----TSCSEEEECCSSCEE
T ss_pred             EEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeC-----CCeEEEEeCCCC-----CCCeEEeecCCCCEE
Confidence            999999987   4566664 788999999999887 4555543     556777777532     356778889999999


Q ss_pred             EEEEcCCCC-EEEEeeCCCcEEEEeCCCC--------------cEeeeeccccCCccceEEEEEcCCCC-EEEEEeCCCe
Q 021925          151 RAVWGPLNR-TIISAGEDAIVRIWDTETG--------------KLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKS  214 (305)
Q Consensus       151 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~  214 (305)
                      +++|+|+++ +|++++.||.|++||+...              +.+....   +|...|++++|+|+++ +|++++.||.
T Consensus       326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~~l~s~s~dg~  402 (430)
T 2xyi_A          326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG---GHTAKISDFSWNPNEPWIICSVSEDNI  402 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC---CCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC---CCCCCceEEEECCCCCCEEEEEECCCC
Confidence            999999995 6899999999999999872              3444443   7889999999999999 8999999999


Q ss_pred             EEEEEcCCc
Q 021925          215 AKLWDARTL  223 (305)
Q Consensus       215 i~iwd~~~~  223 (305)
                      |++|++...
T Consensus       403 i~iw~~~~~  411 (430)
T 2xyi_A          403 MQVWQMAEN  411 (430)
T ss_dssp             EEEEEECHH
T ss_pred             EEEeEcccc
Confidence            999998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-29  Score=202.00  Aligned_cols=205  Identities=23%  Similarity=0.379  Sum_probs=173.3

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      .+.+|...|.+++|  +++++++++.||.|++||  .++....+..|...+.+++|.| +++.+++++.||.|++||.  
T Consensus        99 ~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--  172 (313)
T 3odt_A           99 TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--  172 (313)
T ss_dssp             EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--
T ss_pred             chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--
Confidence            46789999999999  577999999999999999  6788888999999999999998 8999999999999999993  


Q ss_pred             CCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           84 GAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        84 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      .+....+.  +...+.+++++|++.+++.+.      ++.+.+|++.      ..+.+..+.+|...|.+++|+|++ .+
T Consensus       173 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------dg~i~i~d~~------~~~~~~~~~~~~~~i~~~~~~~~~-~l  239 (313)
T 3odt_A          173 DKVIKTFSGIHNDVVRHLAVVDDGHFISCSN------DGLIKLVDMH------TGDVLRTYEGHESFVYCIKLLPNG-DI  239 (313)
T ss_dssp             TEEEEEECSSCSSCEEEEEEEETTEEEEEET------TSEEEEEETT------TCCEEEEEECCSSCEEEEEECTTS-CE
T ss_pred             CceEEEEeccCcccEEEEEEcCCCeEEEccC------CCeEEEEECC------chhhhhhhhcCCceEEEEEEecCC-CE
Confidence            44555554  788999999999999444443      4456666653      346788889999999999999999 58


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE  232 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  232 (305)
                      ++++.||.|++||+++++.+..+.   .|...|.+++|+|+++ +++++.||.|++||+++++.+......
T Consensus       240 ~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~~  306 (313)
T 3odt_A          240 VSCGEDRTVRIWSKENGSLKQVIT---LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEIK  306 (313)
T ss_dssp             EEEETTSEEEEECTTTCCEEEEEE---CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-----
T ss_pred             EEEecCCEEEEEECCCCceeEEEe---ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhhh
Confidence            999999999999999999988887   6888999999999998 667999999999999988776655533

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=4.7e-29  Score=202.23  Aligned_cols=232  Identities=12%  Similarity=0.155  Sum_probs=176.4

Q ss_pred             cceEEEEEcCCCCEE-EEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-CeeE
Q 021925           11 RPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLF   88 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~   88 (305)
                      ..+..+++.++++.+ ++++.|+.|++||..+++.+..+. |...|.+++|+++.  ++++ .|+.|++||+.++ +.+.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~  134 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRIT  134 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSS
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeE
Confidence            458888999988877 567788999999999999998887 67799999999864  4443 4789999999988 6655


Q ss_pred             EEeeCCCceEEEEecCCceEEEe-CCcceeeeeeEEEEEeecccCC---------CCCce-EEEEeccCCCeeEEEEcCC
Q 021925           89 TFNFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPAD---------QGGES-VLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~i~~~~~~~~  157 (305)
                      .+..  +...+++++  ..++++ +.    ..+.+.+|++......         ....+ ...+.+|.+.|.+++|+|+
T Consensus       135 ~~~~--~~~~~~~s~--~~la~~sg~----~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~  206 (355)
T 3vu4_A          135 DDIR--FGGVCEFSN--GLLVYSNEF----NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK  206 (355)
T ss_dssp             CCEE--EEEEEEEET--TEEEEEESS----CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT
T ss_pred             Eecc--CCceEEEEc--cEEEEeCCC----cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC
Confidence            5544  444556666  444443 21    2456777776532100         01112 6788999999999999999


Q ss_pred             CCEEEEeeCCCc-EEEEeCCCCcEeeeeccccC-CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE--------
Q 021925          158 NRTIISAGEDAI-VRIWDTETGKLLKESDKETG-HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--------  227 (305)
Q Consensus       158 ~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------  227 (305)
                      +++|++|+.||+ |++||+++++.+..+..  + |...|++++|+|++++|++++.|++|++||++......        
T Consensus       207 g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~--g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~  284 (355)
T 3vu4_A          207 SDMVATCSQDGTIIRVFKTEDGVLVREFRR--GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI  284 (355)
T ss_dssp             SSEEEEEETTCSEEEEEETTTCCEEEEEEC--TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcEEEEEEc--CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence            999999999998 99999999999888752  3 88999999999999999999999999999997653111        


Q ss_pred             ------------EEe----eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          228 ------------TYV----TERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       228 ------------~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                                  .+.    ...+...++|+|+++.|++++.++..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~  329 (355)
T 3vu4_A          285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI  329 (355)
T ss_dssp             ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred             eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence                        111    11234778999999999999998873

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=5.3e-29  Score=207.39  Aligned_cols=228  Identities=10%  Similarity=0.079  Sum_probs=189.3

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE-----EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-----TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      ..+.+++|+|++.++++++.++.|++||+.+++...     .+.+|.+.|.+++|+|+++++++++.|+.|++||+++++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            446699999988888888889999999999998876     445789999999999999999999999999999999999


Q ss_pred             eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      .+..+. +...+.+++|+|++..++++...    .+.+.++++.      ..+....+.. ...+.+++|+|++++++++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~~~d~~------~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~  271 (433)
T 3bws_A          203 YKATVDLTGKWSKILLYDPIRDLVYCSNWI----SEDISVIDRK------TKLEIRKTDK-IGLPRGLLLSKDGKELYIA  271 (433)
T ss_dssp             EEEEEECSSSSEEEEEEETTTTEEEEEETT----TTEEEEEETT------TTEEEEECCC-CSEEEEEEECTTSSEEEEE
T ss_pred             EEEEEcCCCCCeeEEEEcCCCCEEEEEecC----CCcEEEEECC------CCcEEEEecC-CCCceEEEEcCCCCEEEEE
Confidence            888887 67789999999999887655421    2345556553      2234444443 4458999999999999988


Q ss_pred             e--------CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceEEEEEeeCCCe
Q 021925          165 G--------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKTYVTERPV  235 (305)
Q Consensus       165 ~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~v  235 (305)
                      +        .||.|++||+++++.+..+.    +...+.+++|+|+++.+ ++++.|+.|++||+++++.+..+.+...+
T Consensus       272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~  347 (433)
T 3bws_A          272 QFSASNQESGGGRLGIYSMDKEKLIDTIG----PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKP  347 (433)
T ss_dssp             EEESCTTCSCCEEEEEEETTTTEEEEEEE----EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             ECCCCccccCCCeEEEEECCCCcEEeecc----CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCC
Confidence            8        58899999999998877663    66788999999999755 66688999999999999999988888889


Q ss_pred             eEEEecCCCCcEEEeeCC
Q 021925          236 NAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~  253 (305)
                      .+++|+|+++.+++++.+
T Consensus       348 ~~~~~s~dg~~l~~~~~~  365 (433)
T 3bws_A          348 NTIALSPDGKYLYVSCRG  365 (433)
T ss_dssp             EEEEECTTSSEEEEEECC
T ss_pred             CeEEEcCCCCEEEEEecC
Confidence            999999999999888764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9e-30  Score=225.45  Aligned_cols=211  Identities=18%  Similarity=0.281  Sum_probs=177.3

Q ss_pred             EecccccceEEEEEcCC--CCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEE
Q 021925            5 LMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKL   78 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~v   78 (305)
                      .+.+|.++|++++|+|+  +++|++|+.||.|++||+.+++  .+..+.+|...|.+++|+|+  ++.+++|+.||.|++
T Consensus        48 ~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v  127 (753)
T 3jro_A           48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  127 (753)
T ss_dssp             EECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             eccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence            57899999999999988  9999999999999999999987  77788889999999999998  999999999999999


Q ss_pred             EecCCCCe---eEEEeeCCCceEEEEec-------------CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925           79 WNVETGAQ---LFTFNFDSPARSVDFAV-------------GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (305)
Q Consensus        79 wd~~~~~~---~~~~~~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (305)
                      ||++++..   .....+...+.+++|+|             ++..+++++.     ++.+.+|++....  ........+
T Consensus       128 wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~-----dg~I~iwd~~~~~--~~~~~~~~~  200 (753)
T 3jro_A          128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----DNLVKIWKYNSDA--QTYVLESTL  200 (753)
T ss_dssp             EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET-----TSCEEEEEEETTT--TEEEEEEEE
T ss_pred             EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC-----CCeEEEEeccCCc--ccceeeeee
Confidence            99988732   22233788999999999             4777777765     5667888876432  112456677


Q ss_pred             eccCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCCCcEe--eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925          143 KGPQGRINRAVWGPL---NRTIISAGEDAIVRIWDTETGKLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (305)
Q Consensus       143 ~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  217 (305)
                      .+|...|.+++|+|+   ++++++++.||.|++||+++++..  ........|...|++++|+|++++|++++.||.|++
T Consensus       201 ~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v  280 (753)
T 3jro_A          201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL  280 (753)
T ss_dssp             CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred             cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence            899999999999999   899999999999999999886421  122222358889999999999999999999999999


Q ss_pred             EEcCC
Q 021925          218 WDART  222 (305)
Q Consensus       218 wd~~~  222 (305)
                      ||++.
T Consensus       281 wd~~~  285 (753)
T 3jro_A          281 WKENL  285 (753)
T ss_dssp             CBCCS
T ss_pred             EecCC
Confidence            99874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.8e-29  Score=205.44  Aligned_cols=210  Identities=18%  Similarity=0.289  Sum_probs=164.9

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEE--cCCCcEEEEEeCCCcEEEEec
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      ..+.+|.+.|++++|+|++++|++++.||.|++||+++++.+. +..|...|.+++|  +|++++|++++.||.|++||+
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            3578999999999999999999999999999999999988766 4569999999999  889999999999999999999


Q ss_pred             CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee------------------------------------------e
Q 021925           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL------------------------------------------N  119 (305)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~  119 (305)
                      ++++.+..+.....+.++.+.++. .++...++...+                                          +
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  237 (368)
T 3mmy_A          159 RSSNPMMVLQLPERCYCADVIYPM-AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE  237 (368)
T ss_dssp             SCSSCSEEEECSSCEEEEEEETTE-EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CCCcEEEEEecCCCceEEEecCCe-eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence            999988888876666666655432 222211111110                                          1


Q ss_pred             eeEEEEEeecccCCCCCceEEEEeccCC------------CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc
Q 021925          120 SAIHVKRIARDPADQGGESVLILKGPQG------------RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE  187 (305)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  187 (305)
                      +.+.+|++....   .......+..|..            .|.+++|+|++++|++++.||.|++||+++++.+..+.  
T Consensus       238 g~i~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--  312 (368)
T 3mmy_A          238 GRVAIHYINPPN---PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--  312 (368)
T ss_dssp             SEEEEEESSCSC---HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--
T ss_pred             CcEEEEecCCCC---ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec--
Confidence            223333332110   0134455666665            79999999999999999999999999999999988887  


Q ss_pred             cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       188 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                       .|...|++++|+|++++|++++.|+..+.|++.
T Consensus       313 -~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          313 -QLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             -CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             -CCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence             789999999999999999999998865555543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=4.5e-30  Score=213.96  Aligned_cols=202  Identities=15%  Similarity=0.150  Sum_probs=161.6

Q ss_pred             eEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCeeEEEe---eCCCceEEEEec-CCceEEEeCCcceeee
Q 021925           45 LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFN---FDSPARSVDFAV-GDKLAVITTDPFMELN  119 (305)
Q Consensus        45 ~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~-~~~~~~~~~~~~~~~~  119 (305)
                      .....+|...|++++|+| ++++||+|+.||.|+|||+.+++....+.   +...|.+++|+| ++..+++++.     +
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~-----D  186 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM-----E  186 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS-----S
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC-----C
Confidence            345567889999999999 56799999999999999998877655443   788999999998 5778887765     5


Q ss_pred             eeEEEEEeecccCCCCCceEEEEe---ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEE
Q 021925          120 SAIHVKRIARDPADQGGESVLILK---GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS  196 (305)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  196 (305)
                      +.+.+|++..       .....+.   .+...+.+++|+|++++|++|+.||.|++||++. +.+..+.   +|...|++
T Consensus       187 ~~v~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~---~h~~~v~~  255 (435)
T 4e54_B          187 GTTRLQDFKG-------NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR---MHKKKVTH  255 (435)
T ss_dssp             SCEEEEETTS-------CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB---CCSSCEEE
T ss_pred             CEEEEeeccC-------CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe---cccceEEe
Confidence            6677777632       2222222   3344678999999999999999999999999974 4455554   79999999


Q ss_pred             EEEcCCCC-EEEEEeCCCeEEEEEcCCceEEEEE----eeCCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925          197 LAKAADGS-HFLTGSLDKSAKLWDARTLELIKTY----VTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       197 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                      ++|+|++. +|++++.|+.|++||+++.+....+    .|..+|++++|+|+|++|++|+.|+...++.+.
T Consensus       256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred             eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence            99999876 6889999999999999987654433    378899999999999999999999985444444

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=9.5e-30  Score=209.13  Aligned_cols=206  Identities=11%  Similarity=0.050  Sum_probs=151.5

Q ss_pred             ecccccceEEEEEcC--------CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcE
Q 021925            6 MKGHERPLTYLKYNK--------DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTA   76 (305)
Q Consensus         6 l~~h~~~v~~~~~~~--------~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v   76 (305)
                      +.||.+.|++++|+|        |+++||+|+.|++|+|||+.++.++..+..|..+|.+++|+|++ .+|++++.||+|
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v  211 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNI  211 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEE
Confidence            679999999999998        88999999999999999999988888888899999999999987 489999999999


Q ss_pred             EEEecCCCCeeEEE--------------------------eeCCCceEEEEe-cCCceEEEeCCcceeeeeeEEEEEeec
Q 021925           77 KLWNVETGAQLFTF--------------------------NFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIAR  129 (305)
Q Consensus        77 ~vwd~~~~~~~~~~--------------------------~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (305)
                      ++||+++++.....                          .+...+.++.|. +++..++.+..     +..+.+|++..
T Consensus       212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~-----d~~i~vwd~~~  286 (393)
T 4gq1_A          212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK-----SGAWLRWNLFA  286 (393)
T ss_dssp             EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECT-----TSEEEEEEC--
T ss_pred             EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeC-----CCCEEEEECcc
Confidence            99999887654322                          134567788887 68888887765     44555665543


Q ss_pred             ccCCCC-------------CceEEEEeccCCCeeEEEEcC-C-CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccce
Q 021925          130 DPADQG-------------GESVLILKGPQGRINRAVWGP-L-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI  194 (305)
Q Consensus       130 ~~~~~~-------------~~~~~~~~~~~~~i~~~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  194 (305)
                      ......             .........+...+. ..++| . +.++++|+.||.|++||+.+++......   .|..+|
T Consensus       287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~---~~~~~V  362 (393)
T 4gq1_A          287 NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG-ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI---QLGMPI  362 (393)
T ss_dssp             -----------------CCSCSEEEECSSCCSSC-CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE---ECSSCE
T ss_pred             CCCCceEeeecCccccEEEccccccccccCccee-EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec---CCCCcE
Confidence            211100             011112222222222 33443 3 3466778899999999999988877665   688899


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          195 TSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       195 ~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      ++++|+|||++||+++.+| +.+|.+.
T Consensus       363 ~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          363 VDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            9999999999999998766 6677654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=6.7e-28  Score=198.10  Aligned_cols=217  Identities=13%  Similarity=0.112  Sum_probs=180.3

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEE
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF  101 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~  101 (305)
                      ..+++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+++++.+..+.....+.+++|
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~   81 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV   81 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence            467888999999999999999999888665 58999999999876 6777899999999999999999988889999999


Q ss_pred             ecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCcE
Q 021925          102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKL  180 (305)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~  180 (305)
                      +|+++.++++...    .+.+.++++.      ..+....+.. ...+.+++|+|+++++ ++++.|+.|++||+++++.
T Consensus        82 spdg~~l~~~~~~----~~~v~v~d~~------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           82 SPDGKQVYVTNMA----SSTLSVIDTT------SNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV  150 (391)
T ss_dssp             CTTSSEEEEEETT----TTEEEEEETT------TTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCCEEEEEECC----CCEEEEEECC------CCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            9999977655421    2445666553      2344444443 4578999999999977 6778899999999999988


Q ss_pred             eeeeccccCCccceEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEee---CCcE
Q 021925          181 LKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGE---PQTI  255 (305)
Q Consensus       181 ~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~~  255 (305)
                      +..+.    ....+..++|+|+++.| ++++.++.|++||+++++.+..+.+...+.+++|+|+++++++++   .++.
T Consensus       151 ~~~~~----~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~  225 (391)
T 1l0q_A          151 INTVS----VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT  225 (391)
T ss_dssp             EEEEE----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred             EEEEe----cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc
Confidence            88776    34567999999999887 577789999999999999998888888899999999999999887   4555

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.8e-28  Score=191.56  Aligned_cols=163  Identities=14%  Similarity=0.098  Sum_probs=123.8

Q ss_pred             ecccccceEEEEEcC---CCCEEEEeeCCCceEEEEcCCCeeeEEecCCC---cceEEEEEcCCCcEE------------
Q 021925            6 MKGHERPLTYLKYNK---DGDLLFSCAKDHTPTVWFADNGERLGTYRGHN---GAVWCCDVSRDSMTL------------   67 (305)
Q Consensus         6 l~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~l------------   67 (305)
                      +.+|...++.++|+|   +++.|++|+.|++|+|||+.+++.++++.+|.   ..+.+++|+|+|+++            
T Consensus       174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~l  253 (356)
T 2w18_A          174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESE  253 (356)
T ss_dssp             EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------
T ss_pred             eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCccee
Confidence            446666677777777   66789999999999999999999999998754   367888999999876            


Q ss_pred             EEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC
Q 021925           68 ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (305)
Q Consensus        68 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (305)
                      ++|+.|++|++||..+++.+..+..       ++ |                                       .+|..
T Consensus       254 aSGs~D~tIklWd~~tgk~l~v~~~-------~~-p---------------------------------------~Gh~~  286 (356)
T 2w18_A          254 SLRSPVFQLIVINPKTTLSVGVMLY-------CL-P---------------------------------------PGQAG  286 (356)
T ss_dssp             ----CCEEEEEEETTTTEEEEEEEE-------CC-C---------------------------------------TTCCC
T ss_pred             eccCCCcEEEEEECCCCEEEEEEEe-------ec-c---------------------------------------CCCcc
Confidence            5677889999999988876643210       00 1                                       12222


Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceE-EEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      .+.+..++  +..+++++.|++|+|||+.+++.+.++.   +|...+. .++|+|||++|++|+.|++|+|||+
T Consensus       287 ~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~---gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          287 RFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP---PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC---CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             eeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec---CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            22233333  7889999999999999999999999987   6766554 6899999999999999999999995

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=7.3e-27  Score=193.09  Aligned_cols=228  Identities=14%  Similarity=0.076  Sum_probs=176.8

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCCC---ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCc--E
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDH---TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--A   76 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg---~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~--v   76 (305)
                      +..+.+|.+.|.+++|+|+|+.|++++.++   .|++||+.+++.. .+..|.+.+.+++|+|||+.|+ +++.++.  |
T Consensus       171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i  249 (415)
T 2hqs_A          171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  249 (415)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence            456778999999999999999999999875   9999999988775 5667888999999999999887 6666655  9


Q ss_pred             EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      ++||+++++......+...+.+++|+|+++.++.++...    +...++.+...    . .....+..+...+.+++|+|
T Consensus       250 ~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~----g~~~i~~~d~~----~-~~~~~l~~~~~~~~~~~~sp  320 (415)
T 2hqs_A          250 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA----GRPQVYKVNIN----G-GAPQRITWEGSQNQDADVSS  320 (415)
T ss_dssp             EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETT----S-SCCEECCCSSSEEEEEEECT
T ss_pred             EEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCC----CCcEEEEEECC----C-CCEEEEecCCCcccCeEECC
Confidence            999999887754445777899999999999887765421    11223322211    1 12334455667888999999


Q ss_pred             CCCEEEEeeCC---CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceEEEEEe
Q 021925          157 LNRTIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV  230 (305)
Q Consensus       157 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~  230 (305)
                      +|++|++++.+   ..|++||+.+++.. .+.   .+. .+.+++|+|+|+.|++++.++   .|++||+..+ ....+.
T Consensus       321 dG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~---~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~  394 (415)
T 2hqs_A          321 DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS---STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLP  394 (415)
T ss_dssp             TSSEEEEEEECSSCEEEEEEETTTCCEE-ECC---CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEEECC
T ss_pred             CCCEEEEEECcCCceEEEEEECCCCCEE-Eec---CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-cEEEee
Confidence            99999988764   58999999988764 343   343 899999999999999988877   8999998744 445554


Q ss_pred             -eCCCeeEEEecCCCCc
Q 021925          231 -TERPVNAVTMSPLLDH  246 (305)
Q Consensus       231 -~~~~v~~~~~~~~~~~  246 (305)
                       +...|.+++|+|...+
T Consensus       395 ~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          395 ATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             CSSSEEEEEEECCCCCC
T ss_pred             CCCCCCcCCcccccccc
Confidence             7788999999997643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=3.8e-27  Score=185.91  Aligned_cols=237  Identities=12%  Similarity=0.042  Sum_probs=180.8

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-CeeeEEecCC-CcceEEEEEcCCCcEEEEEe--CCCcEEEE
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGH-NGAVWCCDVSRDSMTLITGS--ADQTAKLW   79 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~--~dg~v~vw   79 (305)
                      ..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|++++  .++...||
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~  113 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY  113 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence            45667899999999999999999987 88999999998 8777666555 36789999999999999998  34556666


Q ss_pred             ec--CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           80 NV--ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        80 d~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      .+  .+++ ...+.....+..++|+|+++.++....    ......++.+...     ......+..+...+.+++|+|+
T Consensus       114 ~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~----~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~s~d  183 (297)
T 2ojh_A          114 LLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGI----RDQVFDIYSMDID-----SGVETRLTHGEGRNDGPDYSPD  183 (297)
T ss_dssp             EEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEE----ETTEEEEEEEETT-----TCCEEECCCSSSCEEEEEECTT
T ss_pred             EEECCCCc-eEEeecCCCccceEECCCCCEEEEEEC----CCCceEEEEEECC-----CCcceEcccCCCccccceECCC
Confidence            54  4444 444555556888999999998774432    1233455555422     2234556677888999999999


Q ss_pred             CCEEEEee-CCCcEEEEeCC-CCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----------CeEEEEEcCCce
Q 021925          158 NRTIISAG-EDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----------KSAKLWDARTLE  224 (305)
Q Consensus       158 ~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~  224 (305)
                      +++++.++ .++.+++|++. .+.....+.   .+...+..++|+|++++|++++.+           +.|++||+.+++
T Consensus       184 g~~l~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          184 GRWIYFNSSRTGQMQIWRVRVDGSSVERIT---DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTSSCEEECC---CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred             CCEEEEEecCCCCccEEEECCCCCCcEEEe---cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence            99888766 58999999886 455555554   567789999999999999888876           569999999876


Q ss_pred             EEEE--E-eeCCCeeEEEecCCCCcEEEeeCCc
Q 021925          225 LIKT--Y-VTERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       225 ~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      ....  + .+...+.+++|+|+++.|++++.+.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          261 VETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            5433  3 3677899999999999999887654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=7.9e-27  Score=192.88  Aligned_cols=244  Identities=11%  Similarity=0.021  Sum_probs=183.6

Q ss_pred             EecccccceEEEEEcC--------------CCCEEEEeeCC------CceEEEEcCCCeeeEEecCCCcceEEEEEcCCC
Q 021925            5 LMKGHERPLTYLKYNK--------------DGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS   64 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~--------------~~~~l~s~~~d------g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~   64 (305)
                      .+.+|...+..+++++              .+..++.++.+      +.|++||.+ +.....+.+|...+.+++|+|+|
T Consensus       112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg  190 (415)
T 2hqs_A          112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDG  190 (415)
T ss_dssp             EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTS
T ss_pred             EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCC
Confidence            3667777777777765              15566666554      799999987 45567777899999999999999


Q ss_pred             cEEEEEeCCC---cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEe-CCcceeeeeeEEEEEeecccCCCCCceEE
Q 021925           65 MTLITGSADQ---TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVL  140 (305)
Q Consensus        65 ~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (305)
                      ++|++++.++   .|++||+++++......+...+.+++|+|+++.++.. ....   ...+..+++..       ....
T Consensus       191 ~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g---~~~i~~~d~~~-------~~~~  260 (415)
T 2hqs_A          191 SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLAS-------GQIR  260 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTT-------CCEE
T ss_pred             CEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCC---CceEEEEECCC-------CCEE
Confidence            9999999875   9999999999887655577889999999999977744 3211   12244444321       2235


Q ss_pred             EEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC---Ce
Q 021925          141 ILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KS  214 (305)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~  214 (305)
                      .+..|...+.+++|+|+|++|++++. ++  .|++||+.+++.. .+.   .+...+.+++|+|+|++|++++.+   +.
T Consensus       261 ~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~---~~~~~~~~~~~spdG~~l~~~~~~~g~~~  336 (415)
T 2hqs_A          261 QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RIT---WEGSQNQDADVSSDGKFMVMVSSNGGQQH  336 (415)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECC---CSSSEEEEEEECTTSSEEEEEEECSSCEE
T ss_pred             eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEe---cCCCcccCeEECCCCCEEEEEECcCCceE
Confidence            66778889999999999999998876 44  6888899887643 332   356788899999999999988864   58


Q ss_pred             EEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       215 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                      |++||+.+++... +.....+.+++|+|+|+.|++++.++..  ..+++|+.
T Consensus       337 i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~~s~~~~~--~~l~~~d~  385 (415)
T 2hqs_A          337 IAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVIYSSSQGMG--SVLNLVST  385 (415)
T ss_dssp             EEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEEEEEEETTE--EEEEEEET
T ss_pred             EEEEECCCCCEEE-ecCCCCcCCeEEcCCCCEEEEEEcCCCc--cEEEEEEC
Confidence            9999999887743 4333479999999999999988766532  12455544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=9.6e-25  Score=175.93  Aligned_cols=241  Identities=9%  Similarity=0.058  Sum_probs=170.2

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCC-CceEEEEcC--CCe--eeEEecCCCcceEEEEEcCCCcEEEEEeC-CCcEEEEe
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCAKD-HTPTVWFAD--NGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWN   80 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~~d-g~v~iw~~~--~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~vwd   80 (305)
                      ..|...+.+++|+|+|++|++++.+ +.|.+|++.  +++  .+..+..+. .+..++|+|++++|++++. ++.|.+||
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            4577789999999999999988876 999999997  554  344555444 7899999999998876665 88999999


Q ss_pred             cC---CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE--EEec-cCCCeeEEEE
Q 021925           81 VE---TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL--ILKG-PQGRINRAVW  154 (305)
Q Consensus        81 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~~~~~  154 (305)
                      +.   +.+....+.....+.+++|+|+++.++++..    ....+.++++....   ......  .... ....+..++|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~----~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  185 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL----KQDRICLFTVSDDG---HLVAQDPAEVTTVEGAGPRHMVF  185 (343)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG----GGTEEEEEEECTTS---CEEEEEEEEEECSTTCCEEEEEE
T ss_pred             CCCCccccccccccCCCCceEEEECCCCCEEEEecC----CCCEEEEEEecCCC---ceeeecccccccCCCCCcceEEE
Confidence            94   3445555556667899999999987777641    13456666664211   011111  2222 3347888999


Q ss_pred             cCCCCEEEEee-CCCcEEEEeCCC--CcE--eeeecccc---CCccceEEEEEcCCCCEEEE-EeCCCeEEEEEcC----
Q 021925          155 GPLNRTIISAG-EDAIVRIWDTET--GKL--LKESDKET---GHKKTITSLAKAADGSHFLT-GSLDKSAKLWDAR----  221 (305)
Q Consensus       155 ~~~~~~l~~~~-~dg~i~iwd~~~--~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~----  221 (305)
                      +|+++++++++ .++.|.+||+..  ++.  ........   .....+..++|+|++++|++ +..++.|++||+.    
T Consensus       186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~  265 (343)
T 1ri6_A          186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS  265 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC
Confidence            99999776555 789999999954  332  22222111   12346778999999988774 4479999999998    


Q ss_pred             CceEEEEEeeCCCeeEEEecCCCCcEEEeeC-CcE
Q 021925          222 TLELIKTYVTERPVNAVTMSPLLDHVCIGEP-QTI  255 (305)
Q Consensus       222 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~  255 (305)
                      +.+.+..+.....+.+++|+|++++|++++. ++.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  300 (343)
T 1ri6_A          266 VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHH  300 (343)
T ss_dssp             CEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCE
T ss_pred             ceEEeeeecCCCccceEEECCCCCEEEEecCCCCe
Confidence            3455555655555899999999999888874 444

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=6.3e-25  Score=176.34  Aligned_cols=246  Identities=10%  Similarity=0.047  Sum_probs=177.7

Q ss_pred             cccccceEEEEEcCCCCEEEEeeC-CCceEEEEcCCCee-eEEecCCCcceEEEEEcCCCcEEEEEeCCC---cEEEEec
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQ---TAKLWNV   81 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg---~v~vwd~   81 (305)
                      ..+...+ +++|+|+|+++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++   .|.+||+
T Consensus        37 ~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~  115 (331)
T 3u4y_A           37 TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF  115 (331)
T ss_dssp             ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred             EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence            3445566 9999999997766655 88999999999887 777776766666699999999998655553   8999999


Q ss_pred             CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeee-EEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      ++++.+..+........++|+|+++.++++...    ... +.++++..........  .........+..++|+|++++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~~~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~spdg~~  189 (331)
T 3u4y_A          116 LKNKFISTIPIPYDAVGIAISPNGNGLILIDRS----SANTVRRFKIDADGVLFDTG--QEFISGGTRPFNITFTPDGNF  189 (331)
T ss_dssp             TTTEEEEEEECCTTEEEEEECTTSSCEEEEEET----TTTEEEEEEECTTCCEEEEE--EEEECSSSSEEEEEECTTSSE
T ss_pred             CCCCeEEEEECCCCccceEECCCCCEEEEEecC----CCceEEEEEECCCCcEeecC--CccccCCCCccceEECCCCCE
Confidence            999998888888888999999999866655321    123 4555554211000000  112234456789999999997


Q ss_pred             EEEee-CCCcEEEEeCCCCcE---eeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceE--EEEEeeC-
Q 021925          161 IISAG-EDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLEL--IKTYVTE-  232 (305)
Q Consensus       161 l~~~~-~dg~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~-  232 (305)
                      ++.++ .++.|.+||+.+++.   +..+.    ....+..++|+|+|++|++++ .++.|.+||+.+++.  +..+... 
T Consensus       190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~  265 (331)
T 3u4y_A          190 AFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGL  265 (331)
T ss_dssp             EEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred             EEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccc
Confidence            66554 689999999998887   66664    346678899999999776554 578899999998877  4443321 


Q ss_pred             ----CC---eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          233 ----RP---VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       233 ----~~---v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                          .+   ...++|+|++++|++++.++..    +.+|++.
T Consensus       266 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~----v~v~d~~  303 (331)
T 3u4y_A          266 LIDPRPLFGANQMALNKTETKLFISANISRE----LKVFTIS  303 (331)
T ss_dssp             CCCCGGGTTCCCEEECTTSSEEEEEETTTTE----EEEEETT
T ss_pred             ccCCCCcccccceEECCCCCEEEEecCCCCc----EEEEEec
Confidence                11   2458999999998877666543    5555543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=4.5e-25  Score=195.66  Aligned_cols=231  Identities=11%  Similarity=-0.004  Sum_probs=175.7

Q ss_pred             ccceEEEEEcCCCCEEEEeeC-CC-----ceEEEEcCCCeeeEEecCCC------------------------cceEEEE
Q 021925           10 ERPLTYLKYNKDGDLLFSCAK-DH-----TPTVWFADNGERLGTYRGHN------------------------GAVWCCD   59 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~-dg-----~v~iw~~~~~~~~~~~~~~~------------------------~~v~~i~   59 (305)
                      ...+.+++|+|||++|++++. |+     .|++||+.+++....+..+.                        ..+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456999999999999999998 88     89999999988776665433                        2378999


Q ss_pred             EcCCCcEEEEEeCCCcEEEEecCCC---CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCC
Q 021925           60 VSRDSMTLITGSADQTAKLWNVETG---AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG  136 (305)
Q Consensus        60 ~~~~~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (305)
                      |+|||++|++++. +.|.+||+.++   +......+...+..++|+|+++.++.+.+.      .+.++++..      +
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~------~i~~~d~~~------g  182 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR------NLWVIDLAS------G  182 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT------EEEEEETTT------T
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCC------cEEEEecCC------C
Confidence            9999999999887 99999999988   554444466789999999999988887653      344444321      1


Q ss_pred             ceEEEEeccCC----------------CeeEEEEcCCCCEEEEeeCCC--------------------------------
Q 021925          137 ESVLILKGPQG----------------RINRAVWGPLNRTIISAGEDA--------------------------------  168 (305)
Q Consensus       137 ~~~~~~~~~~~----------------~i~~~~~~~~~~~l~~~~~dg--------------------------------  168 (305)
                      +.......+..                .+..++|+|||++|++++.|+                                
T Consensus       183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            22222222222                247899999999999988765                                


Q ss_pred             -cEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCceEEEEEeeCC-----Cee
Q 021925          169 -IVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-----DKSAKLWDARTLELIKTYVTER-----PVN  236 (305)
Q Consensus       169 -~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~-----~v~  236 (305)
                       .|++||+.+ ++...... ...+...+..++| |||+.|++++.     +..|++||+.+++....+....     .+.
T Consensus       263 ~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDL-GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEEECSSTTCCCEEECC-CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             eEEEEEECCCCCceEEecC-CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence             889999988 76544332 1246788999999 99999987664     5689999999998877666322     457


Q ss_pred             EEEecCCCCcEEEeeCCcE
Q 021925          237 AVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~  255 (305)
                      +++|+|||+++++++.++.
T Consensus       341 ~~~~spdg~~~~~~~~~g~  359 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERTGF  359 (741)
T ss_dssp             CCEECTTSCEEEEECTTSS
T ss_pred             ceEECCCCeEEEEecCCCc
Confidence            8999999998888777764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=3.1e-23  Score=167.88  Aligned_cols=229  Identities=11%  Similarity=0.026  Sum_probs=178.7

Q ss_pred             ccceEEEEEcCCCCEEEE-eeCCCceEEEEcCCCeeeEEecCCCc---------ceEEEEEcCCCcEEEEEe--CCCcEE
Q 021925           10 ERPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRGHNG---------AVWCCDVSRDSMTLITGS--ADQTAK   77 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~---------~v~~i~~~~~~~~l~s~~--~dg~v~   77 (305)
                      ...+..++|+|+|+.++. ...++.|.+||..+++.+..+..+..         .+.+++|+|+++++++++  .++.|.
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence            345778999999996554 45579999999999998888876443         278999999999877765  478899


Q ss_pred             EEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec----cCCCeeEE
Q 021925           78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----PQGRINRA  152 (305)
Q Consensus        78 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~  152 (305)
                      +||.++++.+..+. ....+..++++|+++.++++..     .+.+..++..      ..+....+..    +...+..+
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~i~~~d~~------~~~~~~~~~~~~~~~~~~~~~~  236 (353)
T 3vgz_A          168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-----DGELITIDTA------DNKILSRKKLLDDGKEHFFINI  236 (353)
T ss_dssp             EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-----TSEEEEEETT------TTEEEEEEECCCSSSCCCEEEE
T ss_pred             EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-----CCeEEEEECC------CCeEEEEEEcCCCCCCcccceE
Confidence            99999999988887 5666899999999998888764     2334444432      2334444433    45567889


Q ss_pred             EEcCCCCEEEEeeC-CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEEEEEe
Q 021925          153 VWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       153 ~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~  230 (305)
                      +|+|+++++++++. ++.|.+||+.+++.+..+..   ..  ...++|+|+++.+++++ .++.|.+||..+++.+..+.
T Consensus       237 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~  311 (353)
T 3vgz_A          237 SLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA---PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD  311 (353)
T ss_dssp             EEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC---SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc---CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            99999998777665 59999999999998887762   11  25689999999766555 68999999999999999888


Q ss_pred             eCCCeeEEEecCCCCcEEEeeCCc
Q 021925          231 TERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       231 ~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      ....+.+++|+|+|++|+++..++
T Consensus       312 ~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          312 TPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             CCSEEEEEEECTTSCEEEEEEECC
T ss_pred             cCCCCCeEEEcCCCCEEEEEEccc
Confidence            777889999999999888776553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=2.6e-23  Score=168.09  Aligned_cols=241  Identities=15%  Similarity=0.155  Sum_probs=162.6

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeC---CCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEe-CCCcEEEE
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLW   79 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~v~vw   79 (305)
                      ...+...+..++|+|+|+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|+|++|++++ .++.+.+|
T Consensus        35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~  113 (347)
T 3hfq_A           35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM  113 (347)
T ss_dssp             EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence            345667788899999999 555544   6899999998766  4444455677889999999999888887 68999999


Q ss_pred             ecCCC-C--eeEEEeeC----------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-
Q 021925           80 NVETG-A--QLFTFNFD----------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-  145 (305)
Q Consensus        80 d~~~~-~--~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  145 (305)
                      ++... .  .+..+...          ..+.+++|+|+++++++...     ...+.++++...   ...........+ 
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----~~~v~~~~~~~~---g~~~~~~~~~~~~  185 (347)
T 3hfq_A          114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----SDKVYVYNVSDA---GQLSEQSVLTMEA  185 (347)
T ss_dssp             EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----TTEEEEEEECTT---SCEEEEEEEECCT
T ss_pred             EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----CCEEEEEEECCC---CcEEEeeeEEcCC
Confidence            99633 2  22333221          13678999999994444432     234555665411   111112222222 


Q ss_pred             CCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCCC--CcE--eeeeccccC---CccceEEEEEcCCCCEEE-EEeCCCeEE
Q 021925          146 QGRINRAVWGPLNRTIISA-GEDAIVRIWDTET--GKL--LKESDKETG---HKKTITSLAKAADGSHFL-TGSLDKSAK  216 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~--~~~--~~~~~~~~~---~~~~v~~~~~~~~~~~l~-~~~~dg~i~  216 (305)
                      ...+..++|+|+|++++++ ..++.|.+|++..  ++.  +..+.....   ....+..++|+|+|++|+ +...++.|.
T Consensus       186 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~  265 (347)
T 3hfq_A          186 GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLA  265 (347)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEE
T ss_pred             CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEE
Confidence            3367789999999976664 5688999999874  432  222221101   114588999999999874 555689999


Q ss_pred             EEEcCC---ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          217 LWDART---LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       217 iwd~~~---~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      +||+..   .+.+..+. +...+..++|+|+|++|++++.++.
T Consensus       266 v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  308 (347)
T 3hfq_A          266 VFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD  308 (347)
T ss_dssp             EEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred             EEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence            999973   24455554 3556899999999999988876533

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=1.6e-25  Score=185.66  Aligned_cols=196  Identities=12%  Similarity=0.088  Sum_probs=148.6

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----------eee------EEecCCCcceEEEEEcCCCcEEE----
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----------ERL------GTYRGHNGAVWCCDVSRDSMTLI----   68 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----------~~~------~~~~~~~~~v~~i~~~~~~~~l~----   68 (305)
                      +...++.+++++++.++++++.++ +++|+..+.          ..+      ..+ .+...|.+++|+|++++|+    
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~  112 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMM  112 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEe
Confidence            344689999999999999999888 899875321          011      112 3567899999999999999    


Q ss_pred             EEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC
Q 021925           69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR  148 (305)
Q Consensus        69 s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (305)
                      +++.|+.|++||++++....    ...                                     .........+.+|...
T Consensus       113 sgs~d~~v~iwd~~~~~~~~----~~~-------------------------------------~~~~~~~~~~~~h~~~  151 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEA----KQQ-------------------------------------KRPFAYHKLLKDAGGM  151 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTT----CSS-------------------------------------CCCSEEEECCCSGGGS
T ss_pred             ccCCCceEEEEEccccccCC----cCC-------------------------------------cceeeeeeccCCCCCc
Confidence            78889999999986531000    000                                     0000112334678999


Q ss_pred             eeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925          149 INRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (305)
Q Consensus       149 i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  227 (305)
                      |.+++|+|+ +++|++++.||.|++||++++.......   +|...|++++|+|+|++|++|+.||+|++||.+ ++...
T Consensus       152 V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~---~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~  227 (434)
T 2oit_A          152 VIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL---PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK  227 (434)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE---CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE
T ss_pred             eEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc---CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc
Confidence            999999998 7899999999999999999886655444   588899999999999999999999999999998 55555


Q ss_pred             EEe-e-------CCCeeEEEecCCCCcEEEee
Q 021925          228 TYV-T-------ERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       228 ~~~-~-------~~~v~~~~~~~~~~~l~~~~  251 (305)
                      .+. +       ...+.+++|++++.++++.+
T Consensus       228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~  259 (434)
T 2oit_A          228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA  259 (434)
T ss_dssp             EECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             cccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence            543 2       12789999999988876543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=4.5e-23  Score=175.54  Aligned_cols=228  Identities=11%  Similarity=0.113  Sum_probs=175.9

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEc--CCCeeeEEecCCCcceEEEEEcC----CCcEEEEEeC-CCcEEEEecCCCC
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFA--DNGERLGTYRGHNGAVWCCDVSR----DSMTLITGSA-DQTAKLWNVETGA   85 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~--~~~~~~~~~~~~~~~v~~i~~~~----~~~~l~s~~~-dg~v~vwd~~~~~   85 (305)
                      +..++|+|||++|++++.|+.|++||+  .+++.+.++. +...+..++|+|    ||+++++++. +++|.+||..+++
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            889999999999999999999999999  8899888888 455679999999    9999998885 8999999999999


Q ss_pred             eeEEEee------------CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEE
Q 021925           86 QLFTFNF------------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (305)
Q Consensus        86 ~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (305)
                      ++..+..            ...+..+.++|++..++++...    .+.+.+++.....    ...+..+ .+...+..+.
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~----~g~i~vvd~~~~~----~l~~~~i-~~~~~~~~~~  330 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE----TGKVLLVNYKDID----NLTVTSI-GAAPFLHDGG  330 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEECTTSS----SCEEEEE-ECCSSCCCEE
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC----CCeEEEEEecCCC----cceeEEe-ccCcCccCce
Confidence            9888763            1267789999977766655321    3344444443211    1111222 3556788899


Q ss_pred             EcCCCCEEEEee-CCCcEEEEeCCCCcEeeeeccc-cCCccceEEEEEcCC-CCEEEEEe-CCCeEEEEEcCC-------
Q 021925          154 WGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKE-TGHKKTITSLAKAAD-GSHFLTGS-LDKSAKLWDART-------  222 (305)
Q Consensus       154 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------  222 (305)
                      |+|+++++++++ .+++|.+||..+++.+..+... ..|......+ ++|+ +..++++. .|++|.+||+.+       
T Consensus       331 ~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~  409 (543)
T 1nir_A          331 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA  409 (543)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred             ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhc
Confidence            999999877655 5899999999999988877621 1244433333 4676 66667765 589999999998       


Q ss_pred             ceEEEEEe-eCCCeeEEEecCCCCcEEEee
Q 021925          223 LELIKTYV-TERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       223 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      ++.++++. +...+..++++|+++.|++++
T Consensus       410 ~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             TSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             CeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence            89999998 566789999999999999987

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=5.4e-23  Score=166.43  Aligned_cols=237  Identities=10%  Similarity=0.059  Sum_probs=182.1

Q ss_pred             ccccceEEEEEcCCCCEEEEeeC-------CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEE
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAK-------DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLW   79 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~-------dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vw   79 (305)
                      .....+..++|+|+|+.+++++.       ++.|.+||..+++.+..+.. ...+..++|+|++++++ +...++.|.+|
T Consensus        38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred             hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            34567889999999998888774       56899999999998888764 34578899999998655 45558999999


Q ss_pred             ecCCCCeeEEEeeCC----------CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe
Q 021925           80 NVETGAQLFTFNFDS----------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI  149 (305)
Q Consensus        80 d~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (305)
                      |.++++.+..+....          .+..++++|+++.++++...   ....+..++.      ...+....+..+...+
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~i~~~d~------~~~~~~~~~~~~~~~~  187 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG---KESVIWVVDG------GNIKLKTAIQNTGKMS  187 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES---SSCEEEEEET------TTTEEEEEECCCCTTC
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC---CCceEEEEcC------CCCceEEEecCCCCcc
Confidence            999999888887432          16789999999877776511   0223444443      2334555555456668


Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc-cCCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceEEE
Q 021925          150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIK  227 (305)
Q Consensus       150 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~  227 (305)
                      ..++|+|+++++++++.++.|.+||+.+++....+... .++...+..++|+|+++.+++++. ++.|.+||..+++.+.
T Consensus       188 ~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  267 (353)
T 3vgz_A          188 TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA  267 (353)
T ss_dssp             CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            89999999999999999999999999999888776531 124567889999999998776665 5999999999999988


Q ss_pred             EEeeCCCeeEEEecCCCCcEEEeeC-CcE
Q 021925          228 TYVTERPVNAVTMSPLLDHVCIGEP-QTI  255 (305)
Q Consensus       228 ~~~~~~~v~~~~~~~~~~~l~~~~~-~~~  255 (305)
                      .+....+ ..++|+|+++.+++++. ++.
T Consensus       268 ~~~~~~~-~~~~~s~dg~~l~v~~~~~~~  295 (353)
T 3vgz_A          268 KVAAPES-LAVLFNPARNEAYVTHRQAGK  295 (353)
T ss_dssp             EEECSSC-CCEEEETTTTEEEEEETTTTE
T ss_pred             EEEcCCC-ceEEECCCCCEEEEEECCCCe
Confidence            8875444 67999999997777664 554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=9.3e-23  Score=163.87  Aligned_cols=232  Identities=11%  Similarity=0.029  Sum_probs=173.1

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecCCCc--ceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeEEEeeCC-----
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNG--AVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDS-----   94 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~-----   94 (305)
                      +++++++.++.|++||..+++.+..+.....  .+..++|+|+++.+ ++++.++.|.+||+.+++.+..+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999999998888763221  57899999999766 555668899999999999888777544     


Q ss_pred             -CceEEEEecCCceEEEeCCcc-----ee--eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925           95 -PARSVDFAVGDKLAVITTDPF-----ME--LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (305)
Q Consensus        95 -~v~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  166 (305)
                       .+..++++|+++.++++....     ..  ....+.+++..      ..+....+.. ...+..++|+|++++++++  
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--  152 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE------TLSRRKAFEA-PRQITMLAWARDGSKLYGL--  152 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT------TTEEEEEEEC-CSSCCCEEECTTSSCEEEE--
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECC------CCcEEEEEeC-CCCcceeEECCCCCEEEEe--
Confidence             788999999998887774210     00  12444555442      2334444443 4567889999999988887  


Q ss_pred             CCcEEEEeCCCCcEeeeecccc----------------------------------------------------------
Q 021925          167 DAIVRIWDTETGKLLKESDKET----------------------------------------------------------  188 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~----------------------------------------------------------  188 (305)
                      ++.|++||+.+++....+....                                                          
T Consensus       153 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  232 (337)
T 1pby_B          153 GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence            6889999999887765443211                                                          


Q ss_pred             -----CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925          189 -----GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL  263 (305)
Q Consensus       189 -----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (305)
                           .+...+..++|+|++++++++  ++.|++||+.+++.+..+.....+.+++|+|+|++|++++.++.     +.+
T Consensus       233 ~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-----i~v  305 (337)
T 1pby_B          233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD-----LAA  305 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSE-----EEE
T ss_pred             EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCc-----EEE
Confidence                 011234568999999998888  79999999999999888887777899999999999998877665     555


Q ss_pred             hhhhhhh
Q 021925          264 FVLFLDI  270 (305)
Q Consensus       264 ~~~~~~~  270 (305)
                      |+.....
T Consensus       306 ~d~~~~~  312 (337)
T 1pby_B          306 YDAETLE  312 (337)
T ss_dssp             EETTTCC
T ss_pred             EECcCCc
Confidence            5554333

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1.8e-24  Score=191.33  Aligned_cols=226  Identities=12%  Similarity=0.025  Sum_probs=167.5

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc---ceEEEEEcCCCcEEEEEeCC---------CcEEE
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSAD---------QTAKL   78 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~l~s~~~d---------g~v~v   78 (305)
                      ..+.+++|+|||+++++ +.||+|++||..+++....+..|..   .|.+++|+|||++|++++.+         +.+.+
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            34788999999997766 7899999999999988888877665   49999999999999998774         77889


Q ss_pred             EecCCCCeeEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC------
Q 021925           79 WNVETGAQLFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR------  148 (305)
Q Consensus        79 wd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  148 (305)
                      ||+.+++. ..+.    +...+..++|+|+++.++.+.+.      .+.+++..      .++.......+...      
T Consensus        96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~------~i~~~~~~------~g~~~~~~~~~~~~~~~~g~  162 (723)
T 1xfd_A           96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN------NIYYCAHV------GKQAIRVVSTGKEGVIYNGL  162 (723)
T ss_dssp             EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETT------EEEEESSS------SSCCEEEECCCBTTTEEEEE
T ss_pred             EECCCCce-EeccCCccccccccccEECCCCCEEEEEECC------eEEEEECC------CCceEEEecCCCCCceECcc
Confidence            99998876 3333    22247889999999998887752      33333332      22333333333332      


Q ss_pred             ------------eeEEEEcCCCCEEEEeeCCC----------------------------------cEEEEeCCCCcEee
Q 021925          149 ------------INRAVWGPLNRTIISAGEDA----------------------------------IVRIWDTETGKLLK  182 (305)
Q Consensus       149 ------------i~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~  182 (305)
                                  +.+++|+|||++|++++.|+                                  .|++||+.+++...
T Consensus       163 ~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~  242 (723)
T 1xfd_A          163 SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL  242 (723)
T ss_dssp             CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE
T ss_pred             cceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE
Confidence                        37899999999999887543                                  79999999887545


Q ss_pred             eeccc---cCCccceEEEEEcCCCCEEEEEeC----CCeEEEEEcCCceEEEEEe--eCCCe----eEEEecCCCCcEEE
Q 021925          183 ESDKE---TGHKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLELIKTYV--TERPV----NAVTMSPLLDHVCI  249 (305)
Q Consensus       183 ~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~--~~~~v----~~~~~~~~~~~l~~  249 (305)
                      .+...   ..+...+..++|+|||++|++.+.    +..|++||+.+++....+.  +...+    ..++|+|||+.|+.
T Consensus       243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  322 (723)
T 1xfd_A          243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF  322 (723)
T ss_dssp             ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred             EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence            55411   113678999999999998877653    3579999999998776654  23333    38899999998886


Q ss_pred             e
Q 021925          250 G  250 (305)
Q Consensus       250 ~  250 (305)
                      .
T Consensus       323 ~  323 (723)
T 1xfd_A          323 I  323 (723)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=3e-22  Score=160.74  Aligned_cols=230  Identities=12%  Similarity=0.071  Sum_probs=165.7

Q ss_pred             EEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CCcEEEEecCCCCe-eEEEeeC
Q 021925           17 KYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETGAQ-LFTFNFD   93 (305)
Q Consensus        17 ~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~vwd~~~~~~-~~~~~~~   93 (305)
                      .|.++++ .+++++.++.|++||..+++.+..+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+...
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            4555554 46777889999999999999888887766777 9999999997766665 89999999999987 6667666


Q ss_pred             CCceE-EEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe-eCCCc-E
Q 021925           94 SPARS-VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAI-V  170 (305)
Q Consensus        94 ~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-i  170 (305)
                      ..... ++++|+++.+++.....  -...+.+++..      ..+.+..+.. ......++|+|++++++++ ..++. |
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~--~~~~i~v~d~~------~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i  153 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLN--HPFNMQSYSFL------KNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTV  153 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSS--SSCEEEEEETT------TTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred             CCCccceEECCCCCEEEEecCCC--CcccEEEEECC------CCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceE
Confidence            66666 99999999888544320  00145555542      2334444443 4456899999999866655 55588 9


Q ss_pred             EEEeCCCCcEeeee-ccccCCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceE---EEEEeeCCCeeEEEecCCCC
Q 021925          171 RIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLEL---IKTYVTERPVNAVTMSPLLD  245 (305)
Q Consensus       171 ~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~  245 (305)
                      .+|++.....+... .........+..++|+|+|++++++ ..++.|++||+.+++.   +..+.....+..++|+|+|+
T Consensus       154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~  233 (331)
T 3u4y_A          154 RRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGS  233 (331)
T ss_dssp             EEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSS
T ss_pred             EEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCC
Confidence            99999764332111 1001234567899999999966554 4689999999999888   77777777889999999999


Q ss_pred             cEEEeeCCcEE
Q 021925          246 HVCIGEPQTIK  256 (305)
Q Consensus       246 ~l~~~~~~~~~  256 (305)
                      ++++++..+..
T Consensus       234 ~l~v~~~~~~~  244 (331)
T 3u4y_A          234 TVYVLTESTVD  244 (331)
T ss_dssp             EEEEECSSEEE
T ss_pred             EEEEEEcCCCE
Confidence            88777654433

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.92  E-value=1.3e-23  Score=181.27  Aligned_cols=228  Identities=13%  Similarity=0.043  Sum_probs=164.6

Q ss_pred             cccceEEEEEcCCCCEEEEeeC-CCceEEEEcCCCeeeEEecCCC-cceEEEEEcCCCcEEEEEeC---CCcEEEEecCC
Q 021925            9 HERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSA---DQTAKLWNVET   83 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~---dg~v~vwd~~~   83 (305)
                      +..+|.+++|+|||+.||+++. ||+++||++++++.. .+..|. ..+..++|+|| +.+++++.   +....+|.+..
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            3568999999999999999887 999999999766654 444455 68999999999 77777765   55566765543


Q ss_pred             --CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           84 --GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        84 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                        ......+.........+|+|+++.++..+..    .....+|++..      ++... +..+..  .+++|+|||++|
T Consensus        98 ~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~----~~~~~l~d~~~------g~~~~-l~~~~~--~~~~~spDG~~l  164 (582)
T 3o4h_A           98 SRPGEEQRLEAVKPMRILSGVDTGEAVVFTGAT----EDRVALYALDG------GGLRE-LARLPG--FGFVSDIRGDLI  164 (582)
T ss_dssp             TSTTCCEECTTSCSBEEEEEEECSSCEEEEEEC----SSCEEEEEEET------TEEEE-EEEESS--CEEEEEEETTEE
T ss_pred             cCCCccccccCCCCceeeeeCCCCCeEEEEecC----CCCceEEEccC------CcEEE-eecCCC--ceEEECCCCCEE
Confidence              2222244444456677899988644333211    11222454432      22222 333333  889999999999


Q ss_pred             EEeeCC----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC--eEEEEEcCCceEEEEEe-eCCC
Q 021925          162 ISAGED----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDARTLELIKTYV-TERP  234 (305)
Q Consensus       162 ~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~-~~~~  234 (305)
                      ++++.+    +.|++||+.+++.. .+.   .+...+..++|+|||+.|+++..++  .|++||+.+++.. .+. +...
T Consensus       165 a~~~~~~~~~~~i~~~d~~~g~~~-~l~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~  239 (582)
T 3o4h_A          165 AGLGFFGGGRVSLFTSNLSSGGLR-VFD---SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKD  239 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCCE-EEC---CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred             EEEEEcCCCCeEEEEEcCCCCCce-Eee---cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcC
Confidence            988876    78999999888754 443   5778899999999999999888888  8999999998877 444 5556


Q ss_pred             eeEEE--------ecCCCCcEEEeeCCcEE
Q 021925          235 VNAVT--------MSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       235 v~~~~--------~~~~~~~l~~~~~~~~~  256 (305)
                      +..++        |+|||.++++++.++..
T Consensus       240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~  269 (582)
T 3o4h_A          240 FSSYRPTAITWLGYLPDGRLAVVARREGRS  269 (582)
T ss_dssp             HHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred             hhhhhhccccceeEcCCCcEEEEEEcCCcE
Confidence            77777        99999777778777763

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=2e-23  Score=173.19  Aligned_cols=163  Identities=10%  Similarity=0.012  Sum_probs=129.5

Q ss_pred             ccccceEEEEEcCCCCEEE----EeeCCCceEEEEcCCC--------e---eeEEecCCCcceEEEEEcCC-CcEEEEEe
Q 021925            8 GHERPLTYLKYNKDGDLLF----SCAKDHTPTVWFADNG--------E---RLGTYRGHNGAVWCCDVSRD-SMTLITGS   71 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~----s~~~dg~v~iw~~~~~--------~---~~~~~~~~~~~v~~i~~~~~-~~~l~s~~   71 (305)
                      .|...|++++|+|+|++|+    +|+.|+.|+|||+.++        +   ....+.+|.+.|.+++|+|+ +++|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            4567799999999999999    7889999999998754        2   24556679999999999997 78999999


Q ss_pred             CCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925           72 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (305)
Q Consensus        72 ~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (305)
                      .||+|++||++++..+.                                                    ...+|...|.+
T Consensus       170 ~Dg~v~iwD~~~~~~~~----------------------------------------------------~~~~~~~~v~~  197 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVC----------------------------------------------------ATLPSTVAVTS  197 (434)
T ss_dssp             TTSCEEEEEESSSEEEE----------------------------------------------------EEECGGGCEEE
T ss_pred             CCCeEEEEEcCCCccee----------------------------------------------------eccCCCCceeE
Confidence            99999999998763221                                                    12347778999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeecccc----CCccceEEEEEcCCCCEEEE-EeCCC------eEEEEEc
Q 021925          152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET----GHKKTITSLAKAADGSHFLT-GSLDK------SAKLWDA  220 (305)
Q Consensus       152 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~-~~~dg------~i~iwd~  220 (305)
                      ++|+|+|++|++|+.||.|++||++ ++....+....    .|...+.+++|++++.++++ .+.||      .+++|++
T Consensus       198 v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l  276 (434)
T 2oit_A          198 VCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL  276 (434)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence            9999999999999999999999998 55555543221    23458999999998887754 33443      3999999


Q ss_pred             CCc
Q 021925          221 RTL  223 (305)
Q Consensus       221 ~~~  223 (305)
                      ++.
T Consensus       277 ~~~  279 (434)
T 2oit_A          277 PKK  279 (434)
T ss_dssp             CCT
T ss_pred             ccC
Confidence            865

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.92  E-value=2e-22  Score=162.78  Aligned_cols=240  Identities=12%  Similarity=0.022  Sum_probs=176.3

Q ss_pred             EEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCC-cceEEEEEcCCCcEEE-EEeCCCcEEEEecCCCCeeEEEee
Q 021925           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNF   92 (305)
Q Consensus        15 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~   92 (305)
                      .++++++++++++++.++.|++||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.+..+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678889999999999999999999999888887543 2578999999998654 555689999999999988877764


Q ss_pred             CC-------CceEEEEecCCceEEEeCCc-------ceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           93 DS-------PARSVDFAVGDKLAVITTDP-------FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        93 ~~-------~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      ..       .+..++++|+++.++++...       .......+.++++.....   .+.+.... +...+.+++|+|++
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~-~~~~~~~~~~s~dg  159 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE---AKPVRTFP-MPRQVYLMRAADDG  159 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG---BCCSEEEE-CCSSCCCEEECTTS
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc---cceeeecc-CCCcccceeECCCC
Confidence            33       37899999999988887632       000124555565543211   12222333 33468899999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeeccccC-------------------------------------------------
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDKETG-------------------------------------------------  189 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------------------------------------------  189 (305)
                      + +++++  +.|.+||+.+++....+.....                                                 
T Consensus       160 ~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  236 (349)
T 1jmx_B          160 S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  236 (349)
T ss_dssp             C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence            9 55554  3499999999887766542110                                                 


Q ss_pred             ----------------CccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeC
Q 021925          190 ----------------HKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       190 ----------------~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                                      +...+..++++| ++++++++  ++.|.+||+.+++.+..+.....+.+++|+|+++.|++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  314 (349)
T 1jmx_B          237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT  314 (349)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB
T ss_pred             EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecC
Confidence                            011345677889 99998888  88999999999999888887777889999999999988776


Q ss_pred             CcEEEEEEeehhhhhh
Q 021925          253 QTIKFMLLVYLFVLFL  268 (305)
Q Consensus       253 ~~~~~~~~~~~~~~~~  268 (305)
                      ++.     +.+|+...
T Consensus       315 ~~~-----v~v~d~~~  325 (349)
T 1jmx_B          315 FND-----LAVFNPDT  325 (349)
T ss_dssp             SSE-----EEEEETTT
T ss_pred             CCe-----EEEEeccc
Confidence            665     55665543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=2.5e-22  Score=171.00  Aligned_cols=230  Identities=10%  Similarity=0.029  Sum_probs=173.9

Q ss_pred             EEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec--CCCCeeEEEeeCC
Q 021925           17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV--ETGAQLFTFNFDS   94 (305)
Q Consensus        17 ~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~--~~~~~~~~~~~~~   94 (305)
                      .++|++..+++++.|++|.+||..+++.+.++..+.. +..++|+|+|++|++++.|+.|.+||+  .+++.+..+....
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~  222 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  222 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence            3889999999999999999999999999999984333 899999999999999999999999999  8888888888888


Q ss_pred             CceEEEEec----CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec----------c-CCCeeEEEEcCCCC
Q 021925           95 PARSVDFAV----GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----------P-QGRINRAVWGPLNR  159 (305)
Q Consensus        95 ~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~  159 (305)
                      .+..++|+|    +++.++++..    ....+.+++.      ...+.+..+..          | ...+..+.++|+++
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~----~~~~v~v~D~------~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~  292 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAY----WPPQFAIMDG------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP  292 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEE----ESSEEEEEET------TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred             CcceEEeCCCcCCCCCEEEEEEc----cCCeEEEEec------cccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence            889999999    9999888752    2344555543      23345555443          2 23688999999876


Q ss_pred             E-EEEeeCCCcEEEEeCCCCcEee--eeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEEEEEee----
Q 021925          160 T-IISAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT----  231 (305)
Q Consensus       160 ~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~----  231 (305)
                      . +++...++.|.+||..+.+.+.  .+    .+...+..+.|+|+|++|++++ .+++|.+||+.+++++..+..    
T Consensus       293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~i----~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p  368 (543)
T 1nir_A          293 EFIVNVKETGKVLLVNYKDIDNLTVTSI----GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP  368 (543)
T ss_dssp             EEEEEETTTTEEEEEECTTSSSCEEEEE----ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred             EEEEEECCCCeEEEEEecCCCcceeEEe----ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence            4 5566778999999998866544  33    2456678899999999876554 589999999999999888872    


Q ss_pred             -CCCeeEEEecCC-CCcEEEee-CCcEEEEEEee
Q 021925          232 -ERPVNAVTMSPL-LDHVCIGE-PQTIKFMLLVY  262 (305)
Q Consensus       232 -~~~v~~~~~~~~-~~~l~~~~-~~~~~~~~~~~  262 (305)
                       ......+ ++|+ ++.++++. +++.+.++.+.
T Consensus       369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~  401 (543)
T 1nir_A          369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTD  401 (543)
T ss_dssp             CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             CCCCCccc-CCCCCccEEEeccCCCceEEEEEeC
Confidence             2222222 4777 55566654 45664444443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=1.3e-22  Score=159.77  Aligned_cols=212  Identities=9%  Similarity=-0.001  Sum_probs=157.3

Q ss_pred             EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC-CCeeEEEee--CCCceEEEEec
Q 021925           27 SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQLFTFNF--DSPARSVDFAV  103 (305)
Q Consensus        27 s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~--~~~v~~~~~~~  103 (305)
                      .++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......  ...+.+++|+|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            34678999999999888764 445889999999999999999876 78999999998 776655542  36788999999


Q ss_pred             CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCC--CCcE
Q 021925          104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE--TGKL  180 (305)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~--~~~~  180 (305)
                      +++.++.+....   .....++.+....     .....+..+ ..+..++|+|++++|+ +++.++.+++|++.  +++.
T Consensus        95 dg~~l~~~~~~~---~~~~~l~~~~~~~-----~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~  165 (297)
T 2ojh_A           95 DGALYAISDKVE---FGKSAIYLLPSTG-----GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE  165 (297)
T ss_dssp             TSSEEEEEECTT---TSSCEEEEEETTC-----CCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             CCCEEEEEEeCC---CCcceEEEEECCC-----CceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence            999888876311   1234444443211     112333333 3488899999999887 77789999999864  3433


Q ss_pred             eeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcC-CceEEEEEe-eCCCeeEEEecCCCCcEEEeeCC
Q 021925          181 LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDAR-TLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       181 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~  253 (305)
                       ..+.   .+...+.+++|+|+++.|+.++ .++.+++|++. .+..+..+. +...+.+++|+|++++|++++.+
T Consensus       166 -~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          166 -TRLT---HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             -EECC---CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEE
T ss_pred             -eEcc---cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcC
Confidence             3333   4678899999999999888766 58999999886 444555554 56678899999999999888765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=1.7e-21  Score=158.25  Aligned_cols=240  Identities=11%  Similarity=0.125  Sum_probs=163.4

Q ss_pred             cccceEEEEEcCCCCEEEEeeCC----CceEEEEcCC--Ce--eeEEecCCCcceEEEEEcCCCcEEEEEe-CCCcEEEE
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKD----HTPTVWFADN--GE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLW   79 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~d----g~v~iw~~~~--~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~v~vw   79 (305)
                      |...+..++|+|+|++|++++.+    +.|.+|++..  ++  .+.....+......+++  ++++|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            66778889999999999998876    7999998865  43  33344445566788888  777777766 58899999


Q ss_pred             ecCCCCeeE----EEee-----------CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC--C-Cce---
Q 021925           80 NVETGAQLF----TFNF-----------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ--G-GES---  138 (305)
Q Consensus        80 d~~~~~~~~----~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~---  138 (305)
                      ++.....+.    ....           ...+.+++|+|+++.++++...    ...+.++++.......  . ...   
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG----TDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT----TTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC----CCEEEEEEEcCCCCcccccceeeccc
Confidence            997543322    1111           1224779999999977665421    2345555554321100  0 000   


Q ss_pred             -EEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCC--
Q 021925          139 -VLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLD--  212 (305)
Q Consensus       139 -~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--  212 (305)
                       ......+...+..++|+|+++++++++ .++.|.+||+.+++.  +..+.....+......++|+|||++|+++..+  
T Consensus       202 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~  281 (361)
T 3scy_A          202 PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA  281 (361)
T ss_dssp             EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred             ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence             122233455678999999999888777 589999999987654  23333222344567899999999998776654  


Q ss_pred             CeEEEEEcC--Cce--EEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925          213 KSAKLWDAR--TLE--LIKTYVTERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       213 g~i~iwd~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      +.|.+|++.  +++  .+..+.....+.+++|+|+|++|++++.++
T Consensus       282 ~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~  327 (361)
T 3scy_A          282 DGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT  327 (361)
T ss_dssp             CEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT
T ss_pred             CEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC
Confidence            899999985  444  444444555788999999999999887443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=3.2e-23  Score=182.86  Aligned_cols=238  Identities=11%  Similarity=0.087  Sum_probs=170.5

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-----CeeeEEecCCCcc--------------eEEEEEcCCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-----GERLGTYRGHNGA--------------VWCCDVSRDS   64 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-----~~~~~~~~~~~~~--------------v~~i~~~~~~   64 (305)
                      ..+..|...+.+++|+|||+.|+++ .|+.|++|++.+     ++.......+...              +.+++|+|||
T Consensus       114 ~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg  192 (706)
T 2z3z_A          114 TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG  192 (706)
T ss_dssp             EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS
T ss_pred             EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC
Confidence            3455677789999999999999985 689999999998     7766544443332              4899999999


Q ss_pred             cEEEEEe---------------------------------CCCcEEEEecCCCCeeEEEe---eCCCceEEEEecCCceE
Q 021925           65 MTLITGS---------------------------------ADQTAKLWNVETGAQLFTFN---FDSPARSVDFAVGDKLA  108 (305)
Q Consensus        65 ~~l~s~~---------------------------------~dg~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~  108 (305)
                      ++|++++                                 .+..|.+||+.+++......   +...+.+++|+|+++.+
T Consensus       193 ~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  272 (706)
T 2z3z_A          193 SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENIL  272 (706)
T ss_dssp             SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEE
T ss_pred             CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEE
Confidence            9999987                                 44679999999887554432   33567899999999988


Q ss_pred             EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe--ccCC---CeeEEEEcC--CCCEEEEeeCCCcEEEEeCC-CCcE
Q 021925          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQG---RINRAVWGP--LNRTIISAGEDAIVRIWDTE-TGKL  180 (305)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~  180 (305)
                      +++..........+..++..      .++....+.  .+..   .+..++|+|  +|+++++++.||.+++|++. +++.
T Consensus       273 ~~~~~~~~~~~~~v~~~d~~------~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~  346 (706)
T 2z3z_A          273 YVAEVNRAQNECKVNAYDAE------TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL  346 (706)
T ss_dssp             EEEEECTTSCEEEEEEEETT------TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE
T ss_pred             EEEEeCCCCCeeEEEEEECC------CCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE
Confidence            77543222222344444432      121222221  2222   246789999  99999999999999999876 5666


Q ss_pred             eeeeccccCCccceEE-EEEcCCCCEEEEEeC-CC----eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeC
Q 021925          181 LKESDKETGHKKTITS-LAKAADGSHFLTGSL-DK----SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       181 ~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                      +..+.   .+...+.. ++|+|+++.|+.++. ++    .|+.||+.+++ ...+.+...+.+++|+|+|++++.+..
T Consensus       347 ~~~l~---~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~  420 (706)
T 2z3z_A          347 IRQVT---KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQ  420 (706)
T ss_dssp             EEECC---CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEE
T ss_pred             EEecC---CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEec
Confidence            66665   56667776 799999998766554 44    67778887765 344556777999999999998887643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=6.9e-23  Score=181.68  Aligned_cols=236  Identities=7%  Similarity=-0.015  Sum_probs=172.7

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcc----------------eEEEEEcCCCcEE
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA----------------VWCCDVSRDSMTL   67 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~----------------v~~i~~~~~~~~l   67 (305)
                      ..+..|...+.+++|||||++|++++ ++.|++||+.+++.......+...                +.+++|+|||++|
T Consensus       145 ~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l  223 (741)
T 2ecf_A          145 RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI  223 (741)
T ss_dssp             CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE
T ss_pred             EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEE
Confidence            45677888999999999999999987 569999999988776555444432                4789999999999


Q ss_pred             EEEeCCC---------------------------------cEEEEecCC-CCeeEEE---eeCCCceEEEEecCCceEEE
Q 021925           68 ITGSADQ---------------------------------TAKLWNVET-GAQLFTF---NFDSPARSVDFAVGDKLAVI  110 (305)
Q Consensus        68 ~s~~~dg---------------------------------~v~vwd~~~-~~~~~~~---~~~~~v~~~~~~~~~~~~~~  110 (305)
                      ++++.|+                                 .|.+||+.+ ++.....   .+...+..++| |+++.++.
T Consensus       224 ~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~  302 (741)
T 2ecf_A          224 AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSF  302 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEE
T ss_pred             EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEE
Confidence            9988765                                 789999988 7755433   13456789999 99998887


Q ss_pred             eCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC----CeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCcEeeeec
Q 021925          111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG----RINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESD  185 (305)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~  185 (305)
                      ...........+..++..      .++....+..+..    .+..++|+|+|+++++++.||.++||.+. .++ ...+.
T Consensus       303 ~~~~~~~~~~~i~~~d~~------~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~  375 (741)
T 2ecf_A          303 QRQSRDQKKLDLVEVTLA------SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT  375 (741)
T ss_dssp             EEEETTSSEEEEEEEETT------TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred             EEecccCCeEEEEEEECC------CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence            653222223444444442      2344444444443    45689999999988899999988888765 344 55554


Q ss_pred             cccCCccceEEE-EEcCCCCEEEE-EeCCC--eEEEEEcCC-ceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925          186 KETGHKKTITSL-AKAADGSHFLT-GSLDK--SAKLWDART-LELIKTYVTERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       186 ~~~~~~~~v~~~-~~~~~~~~l~~-~~~dg--~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  251 (305)
                         .+...+..+ .|+|+++.|+. ++.++  .+++|++.. ++....+.....+.+++|+|+|+.|+...
T Consensus       376 ---~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~  443 (741)
T 2ecf_A          376 ---HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSW  443 (741)
T ss_dssp             ---CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEE
T ss_pred             ---ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEe
Confidence               567778777 59999987754 44455  899999864 55556666667789999999999988763

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=4.7e-23  Score=188.87  Aligned_cols=231  Identities=11%  Similarity=-0.005  Sum_probs=177.7

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-----------CCcceEEEEEc-CCCcEEEEEeC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-----------HNGAVWCCDVS-RDSMTLITGSA   72 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-----------~~~~v~~i~~~-~~~~~l~s~~~   72 (305)
                      .+.+|. .+...+|+|||+.|+++. ++.|++|+.... .+..+..           |...+.+++|+ |||+.|++++ 
T Consensus       240 ~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-  315 (1045)
T 1k32_A          240 KHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-  315 (1045)
T ss_dssp             ECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-
T ss_pred             EecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-
Confidence            344554 467789999999998874 899999998544 3445554           34478999999 9999999887 


Q ss_pred             CCcEEEEecCCCCeeEEEeeCC-CceEEEEecCCceEEEeCCcceeeeeeEE-EEEeecccCCCCCceEEEEeccCCCee
Q 021925           73 DQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIH-VKRIARDPADQGGESVLILKGPQGRIN  150 (305)
Q Consensus        73 dg~v~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (305)
                      ++.|.+|++.+++......+.. .+..++|+ +++.++.+.+     ...+. +++..      . .....+.+|...+.
T Consensus       316 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-----~~~l~~~~d~~------~-~~~~~l~~~~~~~~  382 (1045)
T 1k32_A          316 RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-----EGDFLGIYDYR------T-GKAEKFEENLGNVF  382 (1045)
T ss_dssp             TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-----TEEEEEEEETT------T-CCEEECCCCCCSEE
T ss_pred             cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-----CCceEEEEECC------C-CCceEecCCcccee
Confidence            7899999998877554333555 78889999 8888887665     12222 22221      1 22334447778899


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC----------eEEEEEc
Q 021925          151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK----------SAKLWDA  220 (305)
Q Consensus       151 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~iwd~  220 (305)
                      .++|+|+|++|++++.++.|++||+.+++......   +|...+..++|+|||++|++++.++          .|++||+
T Consensus       383 ~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~---~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~  459 (1045)
T 1k32_A          383 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER---SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM  459 (1045)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred             eeEECCCCCEEEEECCCCeEEEEECCCCceEEecc---CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence            99999999999999999999999999998777664   5778889999999999999887654          8999999


Q ss_pred             CCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          221 RTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       221 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      .+++......+...+.+++|+|+|+.|++++.++.
T Consensus       460 ~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~  494 (1045)
T 1k32_A          460 EGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL  494 (1045)
T ss_dssp             TTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC
T ss_pred             CCCcEEEeeCCCcccCCceEcCCCCEEEEEecccC
Confidence            98884333336777889999999999998877554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=3.3e-22  Score=176.40  Aligned_cols=233  Identities=12%  Similarity=0.054  Sum_probs=166.3

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC-----CC
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-----GA   85 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~-----~~   85 (305)
                      ..|.+++|+|| +.++.+. ++.|++||+.+++... +..+...+.+++|+|||+.|+++ .|+.|++||+.+     ++
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            56999999999 6666554 5999999999887654 44467788999999999999985 679999999998     76


Q ss_pred             eeEEEeeCCC---------------ceEEEEecCCceEEEeCCcc----------------------------eeeeeeE
Q 021925           86 QLFTFNFDSP---------------ARSVDFAVGDKLAVITTDPF----------------------------MELNSAI  122 (305)
Q Consensus        86 ~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~  122 (305)
                      ..........               +.++.|+|+++.++.+....                            ......+
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            6544332222               58999999999988875100                            0011233


Q ss_pred             EEEEeecccCCCCCceEEEE--eccCCCeeEEEEcCCCCEEEEeeCCC-----cEEEEeCCCCcEeeeeccccCCc---c
Q 021925          123 HVKRIARDPADQGGESVLIL--KGPQGRINRAVWGPLNRTIISAGEDA-----IVRIWDTETGKLLKESDKETGHK---K  192 (305)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~---~  192 (305)
                      .++++.      .++.....  ..|...+.+++|+|+|++|++++.++     .|++||+.+++....+... .+.   .
T Consensus       238 ~~~d~~------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~~  310 (706)
T 2z3z_A          238 GIYHLA------TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-TDKHYVE  310 (706)
T ss_dssp             EEEETT------TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-ECSSCCC
T ss_pred             EEEECC------CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-cCCCeEC
Confidence            344332      11221111  24567789999999999999887765     8999999988444433211 111   2


Q ss_pred             ceEEEEEcC--CCCEEEEEeCCCeEEEEEcC-CceEEEEEe-eCCCeeE-EEecCCCCcEEEeeCCc
Q 021925          193 TITSLAKAA--DGSHFLTGSLDKSAKLWDAR-TLELIKTYV-TERPVNA-VTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       193 ~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~-~~~~v~~-~~~~~~~~~l~~~~~~~  254 (305)
                      .+..++|+|  +|+++++++.||.+++|++. +++.+..+. +...+.+ ++|+|+++.|++++.++
T Consensus       311 ~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~  377 (706)
T 2z3z_A          311 PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA  377 (706)
T ss_dssp             CCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred             ccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence            346789999  99999999999999999876 566666665 5556766 79999999887765554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=2.8e-21  Score=155.59  Aligned_cols=226  Identities=14%  Similarity=0.176  Sum_probs=153.5

Q ss_pred             EEEEeeCCCceEEEEcC-CC--eeeEEecCCCcceEEEEEcCCCcEEEEEeCC-CcEEEEecC--CCCe--eEEEeeCCC
Q 021925           24 LLFSCAKDHTPTVWFAD-NG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-QTAKLWNVE--TGAQ--LFTFNFDSP   95 (305)
Q Consensus        24 ~l~s~~~dg~v~iw~~~-~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-g~v~vwd~~--~~~~--~~~~~~~~~   95 (305)
                      .+++++.|+.|++|++. ++  +.+..+ .+...+.+++|+|++++|++++.+ +.|.+|++.  +++.  +..+.....
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCC
Confidence            34444779999999995 33  333333 377789999999999988888886 999999997  5553  344455568


Q ss_pred             ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEe
Q 021925           96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWD  174 (305)
Q Consensus        96 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd  174 (305)
                      +..++|+|+++.++++...    .+.+.++++. .  ....+....+. ....+.+++|+|+++++++++ .++.|++||
T Consensus        86 ~~~~~~s~dg~~l~~~~~~----~~~i~~~d~~-~--~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  157 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYN----AGNVSVTRLE-D--GLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFT  157 (343)
T ss_dssp             CSEEEECTTSSEEEEEETT----TTEEEEEEEE-T--TEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             CcEEEEcCCCCEEEEEecC----CCeEEEEECC-C--Ccccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence            8999999999977666431    2345555553 0  00112233333 334588999999999888877 899999999


Q ss_pred             CCC-CcEeeee--ccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCC--ceE--EEEEe-e------CCCeeEEE
Q 021925          175 TET-GKLLKES--DKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDART--LEL--IKTYV-T------ERPVNAVT  239 (305)
Q Consensus       175 ~~~-~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~--~~~~~-~------~~~v~~~~  239 (305)
                      +.+ ++.....  .........+..++|+|+++++++++ .++.|.+||+..  ++.  ..... .      ...+..++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  237 (343)
T 1ri6_A          158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  237 (343)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence            987 5443211  11112345788999999999776554 789999999953  432  22222 1      12456899


Q ss_pred             ecCCCCcEEEee-CCcEEEE
Q 021925          240 MSPLLDHVCIGE-PQTIKFM  258 (305)
Q Consensus       240 ~~~~~~~l~~~~-~~~~~~~  258 (305)
                      |+|++++|+++. .++...+
T Consensus       238 ~s~dg~~l~v~~~~~~~i~v  257 (343)
T 1ri6_A          238 ITPDGRHLYACDRTASLITV  257 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEE
T ss_pred             ECCCCCEEEEEecCCCEEEE
Confidence            999999888655 5555333

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=5.6e-22  Score=175.41  Aligned_cols=239  Identities=10%  Similarity=0.041  Sum_probs=163.2

Q ss_pred             Eeccccc---ceEEEEEcCCCCEEEEeeCC---------CceEEEEcCCCeeeEEec---CCCcceEEEEEcCCCcEEEE
Q 021925            5 LMKGHER---PLTYLKYNKDGDLLFSCAKD---------HTPTVWFADNGERLGTYR---GHNGAVWCCDVSRDSMTLIT   69 (305)
Q Consensus         5 ~l~~h~~---~v~~~~~~~~~~~l~s~~~d---------g~v~iw~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s   69 (305)
                      ++.+|..   .|.+++|||||++|++++.+         +.+++||+.+++. ..+.   .|...+..++|+|||+.|++
T Consensus        52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~  130 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIF  130 (723)
T ss_dssp             EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEE
T ss_pred             EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEE
Confidence            3455554   49999999999999998764         6788999998875 3333   34555889999999999999


Q ss_pred             EeCCCcEEEEecCCCCeeEEEee-CCCc------------------eEEEEecCCceEEEeCCccee-------------
Q 021925           70 GSADQTAKLWNVETGAQLFTFNF-DSPA------------------RSVDFAVGDKLAVITTDPFME-------------  117 (305)
Q Consensus        70 ~~~dg~v~vwd~~~~~~~~~~~~-~~~v------------------~~~~~~~~~~~~~~~~~~~~~-------------  117 (305)
                      ++. +.|++||+.+++....... ...+                  .+++|+|+++.++.+......             
T Consensus       131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~  209 (723)
T 1xfd_A          131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI  209 (723)
T ss_dssp             EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred             EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence            886 7999999998877665542 2223                  789999999988877532100             


Q ss_pred             ----------------eeeeEEEEEeecccCCCCCceEEEEecc------CCCeeEEEEcCCCCEEEEeeC----CCcEE
Q 021925          118 ----------------LNSAIHVKRIARDPADQGGESVLILKGP------QGRINRAVWGPLNRTIISAGE----DAIVR  171 (305)
Q Consensus       118 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~----dg~i~  171 (305)
                                      ....+.++++..      .+....+..+      ...+..++|+|||+++++...    +..|+
T Consensus       210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~------~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~  283 (723)
T 1xfd_A          210 YPTVKPYHYPKAGSENPSISLHVIGLNG------PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILT  283 (723)
T ss_dssp             SCCCEEEECCBTTSCCCEEEEEEEESSS------SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEE
T ss_pred             CCcceeccCCCCCCCCCeeEEEEEECCC------CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEE
Confidence                            011333333321      2222333333      567889999999998876643    35799


Q ss_pred             EEeCCCCcEeeeeccccCCccce----EEEEEcCCCCEEEE--EeCCC------eEEEEE-cCCceE--EEEEe-eCCCe
Q 021925          172 IWDTETGKLLKESDKETGHKKTI----TSLAKAADGSHFLT--GSLDK------SAKLWD-ARTLEL--IKTYV-TERPV  235 (305)
Q Consensus       172 iwd~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~-~~~~v  235 (305)
                      +||+.+++....+..  .+...+    ..++|+|||+.|+.  +..++      .|++|| ..+++.  ...+. ....+
T Consensus       284 ~~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  361 (723)
T 1xfd_A          284 LCDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV  361 (723)
T ss_dssp             EEETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred             EEeCCCCcceEEEEe--ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence            999999887665531  122333    37899999998775  44567      577777 344441  34443 33445


Q ss_pred             eE-EEecCCCCcEEEeeCC
Q 021925          236 NA-VTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       236 ~~-~~~~~~~~~l~~~~~~  253 (305)
                      .. ++|+|+|+.|+..+.+
T Consensus       362 ~~~~~~spdg~~l~~~~~~  380 (723)
T 1xfd_A          362 TKILAYDEKGNKIYFLSTE  380 (723)
T ss_dssp             EEEEEEETTTTEEEEEESS
T ss_pred             EeeeEEcCCCCEEEEEEcC
Confidence            54 6999999999876554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=2.5e-21  Score=177.43  Aligned_cols=227  Identities=14%  Similarity=0.139  Sum_probs=175.8

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      .+.+|...+.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+...+|+|||+.|+++ .++.|.+||+..
T Consensus       198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~  274 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT  274 (1045)
T ss_dssp             EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred             ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence            45789999999999998 6777888889999998753 44555666555 45677999999999887 489999999954


Q ss_pred             CCeeEEEee------------CCCceEEEEe-cCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC-Ce
Q 021925           84 GAQLFTFNF------------DSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-RI  149 (305)
Q Consensus        84 ~~~~~~~~~------------~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i  149 (305)
                      . .+..+..            ...+..++|+ |+++.++.+..      ..+..++..       ......+..|.. .+
T Consensus       275 ~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~------~~i~~~~~~-------~~~~~~~~~~~~~~~  340 (1045)
T 1k32_A          275 E-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSR------GQAFIQDVS-------GTYVLKVPEPLRIRY  340 (1045)
T ss_dssp             C-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEET------TEEEEECTT-------SSBEEECSCCSCEEE
T ss_pred             e-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEEc------CEEEEEcCC-------CCceEEccCCCcceE
Confidence            4 3333332            2268999999 99998887763      222332221       122334556666 88


Q ss_pred             eEEEEcCCCCEEEEeeCCCcEE-EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE
Q 021925          150 NRAVWGPLNRTIISAGEDAIVR-IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (305)
Q Consensus       150 ~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  228 (305)
                      ..++|+ +++.|+.++.++.+. +||+.+++.. .+.   ++...+..++|+|||++|++++.++.|++||+.+++....
T Consensus       341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~---~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~  415 (1045)
T 1k32_A          341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE---ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI  415 (1045)
T ss_dssp             EEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC---CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec---CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe
Confidence            999999 999999998888898 9999876643 333   5778899999999999999999999999999999988877


Q ss_pred             Ee-eCCCeeEEEecCCCCcEEEeeCC
Q 021925          229 YV-TERPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       229 ~~-~~~~v~~~~~~~~~~~l~~~~~~  253 (305)
                      .. +...+.+++|+|||++|++++.+
T Consensus       416 ~~~~~~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          416 ERSREAMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             EECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             ccCCCCCccceEECCCCCeEEEEecC
Confidence            74 77788999999999999887654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=5.5e-21  Score=155.48  Aligned_cols=238  Identities=11%  Similarity=0.086  Sum_probs=162.3

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcC-CCeeeEEecC-CCcceEEEEEcCCCcE--EEEEe-------------C
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD-NGERLGTYRG-HNGAVWCCDVSRDSMT--LITGS-------------A   72 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~-~~~~~~~~~~-~~~~v~~i~~~~~~~~--l~s~~-------------~   72 (305)
                      ...+..++|+|+|++|++++.+ .|.+|++. +++....... ..+.+.+++|+|+|++  +++++             .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            3468899999999999998887 99999997 7776543321 1123566899999984  45553             6


Q ss_pred             CCcEEEEecC-CCCeeEEEe-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe--c
Q 021925           73 DQTAKLWNVE-TGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--G  144 (305)
Q Consensus        73 dg~v~vwd~~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  144 (305)
                      +|.+.+|++. .++....+.     ....+.+++|+|+++.++++...    ...+.++++..   ......+..+.  .
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~----~~~v~~~~~~~---~g~~~~~~~~~~~~  190 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT----ANKLWTHRKLA---SGEVELVGSVDAPD  190 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT----TTEEEEEEECT---TSCEEEEEEEECSS
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC----CCEEEEEEECC---CCCEEEeeeEecCC
Confidence            8999999997 455544433     34678899999999987765421    23455555531   01111122233  2


Q ss_pred             cCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCC--CCcEe---eeecccc----CCcc------ceEEEE-EcCCCCEEE
Q 021925          145 PQGRINRAVWGPLNRTIISAGE-DAIVRIWDTE--TGKLL---KESDKET----GHKK------TITSLA-KAADGSHFL  207 (305)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~~---~~~~~~~----~~~~------~v~~~~-~~~~~~~l~  207 (305)
                      +...+..++|+|+|+++++++. ++.|.+|++.  +++..   ..+....    ++..      .+..++ |+|||++|+
T Consensus       191 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~  270 (365)
T 1jof_A          191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence            3567899999999999988775 6899999875  45542   1222111    1222      588999 999999988


Q ss_pred             EEeCCC------eEEEEEcC-CceEEEE---Ee-eCCCeeEEEecC---CCCcEEEeeCCcE
Q 021925          208 TGSLDK------SAKLWDAR-TLELIKT---YV-TERPVNAVTMSP---LLDHVCIGEPQTI  255 (305)
Q Consensus       208 ~~~~dg------~i~iwd~~-~~~~~~~---~~-~~~~v~~~~~~~---~~~~l~~~~~~~~  255 (305)
                      +++.+.      +|.+|++. +++....   .. ....+..++|+|   +|++|++++.++.
T Consensus       271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~  332 (365)
T 1jof_A          271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG  332 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred             EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence            776432      89999996 5665432   32 345678899999   8999999876533

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=2.7e-21  Score=155.31  Aligned_cols=206  Identities=14%  Similarity=0.070  Sum_probs=157.1

Q ss_pred             cceEEEEEcCCCCEEEEee------------CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925           11 RPLTYLKYNKDGDLLFSCA------------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~------------~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v   78 (305)
                      ..+.+++|+|+|+++++++            .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++  ++.|.+
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            3678899999999998886            579999999999988877764 4567889999999988887  688999


Q ss_pred             EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeee-------------------eeEEEEEeecccCCCCCce-
Q 021925           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN-------------------SAIHVKRIARDPADQGGES-  138 (305)
Q Consensus        79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-  138 (305)
                      ||+.+++....+........+.++|++..++..........                   ..+..++..      ..+. 
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~------~~~~~  232 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE------TGEMA  232 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT------TCCEE
T ss_pred             EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC------CCCce
Confidence            99999988877764442334478888886655443211110                   012233322      1121 


Q ss_pred             EEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925          139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW  218 (305)
Q Consensus       139 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  218 (305)
                      ...+..+...+..++|+|++++++++  ++.|.+||+.+++.+..+.    ....+.+++|+|+|++|++++.++.|++|
T Consensus       233 ~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~i~v~  306 (337)
T 1pby_B          233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAY  306 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred             EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec----CCCceeeEEECCCCCEEEEEcCCCcEEEE
Confidence            33345566778899999999999888  6999999999998887775    33567889999999999999999999999


Q ss_pred             EcCCceEEEEEee
Q 021925          219 DARTLELIKTYVT  231 (305)
Q Consensus       219 d~~~~~~~~~~~~  231 (305)
                      |+.+++.+..+..
T Consensus       307 d~~~~~~~~~~~~  319 (337)
T 1pby_B          307 DAETLEKKGQVDL  319 (337)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             ECcCCcEEEEEEc
Confidence            9999999888873

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.88  E-value=2.2e-22  Score=177.83  Aligned_cols=229  Identities=14%  Similarity=0.078  Sum_probs=158.6

Q ss_pred             EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc---ceEEEEEcCCCcEEEEEeC---------CCcEEEEec
Q 021925           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSA---------DQTAKLWNV   81 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~l~s~~~---------dg~v~vwd~   81 (305)
                      .+++|+|+|+++++ +.|+.|++||+.+++....+..|..   .+.+++|+|||++|++++.         ++.|++||+
T Consensus        19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            37899999965555 4699999999999988777765543   3899999999999998876         789999999


Q ss_pred             CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC---CCCceEEEEeccCC---------Ce
Q 021925           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD---QGGESVLILKGPQG---------RI  149 (305)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---------~i  149 (305)
                      .+++.+........+..++|+|+|+.++.+.+.      .+.++++......   ..+.....+.++..         ..
T Consensus        98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~------~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~  171 (719)
T 1z68_A           98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQN------NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK  171 (719)
T ss_dssp             TTTEECCSSCCCSSBCCEEECSSTTCEEEEETT------EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred             CCCccccceecCcccccceECCCCCEEEEEECC------eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence            988763212234678899999999999887642      4444443211100   00000001122221         22


Q ss_pred             eEEEEcCCCCEEEEeeCCC----------------------------------cEEEEeCCCCcEe--eeec---cccCC
Q 021925          150 NRAVWGPLNRTIISAGEDA----------------------------------IVRIWDTETGKLL--KESD---KETGH  190 (305)
Q Consensus       150 ~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~--~~~~---~~~~~  190 (305)
                      .+++|+|||++|++++.|.                                  .|++||+.+++..  ..+.   ...+|
T Consensus       172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  251 (719)
T 1z68_A          172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS  251 (719)
T ss_dssp             CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred             ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence            5899999999999887652                                  7889999887642  1111   11257


Q ss_pred             ccceEEEEEcCCCCEEEEEeCC----CeEEEEE----cCCceEEEEE----e-eCCCee-----EEEecCCCCcEEE
Q 021925          191 KKTITSLAKAADGSHFLTGSLD----KSAKLWD----ARTLELIKTY----V-TERPVN-----AVTMSPLLDHVCI  249 (305)
Q Consensus       191 ~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~----~-~~~~v~-----~~~~~~~~~~l~~  249 (305)
                      ...+..++|+||++++++....    ..|++||    +.+++....+    . +...+.     .++|+|+|+.++.
T Consensus       252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence            7889999999998877764432    3488999    8887765544    2 445565     8899999997665

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=3.2e-20  Score=149.81  Aligned_cols=214  Identities=11%  Similarity=0.059  Sum_probs=151.9

Q ss_pred             ceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCC------cceEEEEEcCCCcEEEEEeCC-----------
Q 021925           12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHN------GAVWCCDVSRDSMTLITGSAD-----------   73 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~------~~v~~i~~~~~~~~l~s~~~d-----------   73 (305)
                      .+..++|+|+|+.++ ++..++.|.+||+.+++.+..+....      ..+.+++|+|+|++|++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            578999999998665 45568999999999999887776432      237889999999999988865           


Q ss_pred             -CcEEEEecCCC---CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeee-eEE-EEEeecccCCC-------------
Q 021925           74 -QTAKLWNVETG---AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS-AIH-VKRIARDPADQ-------------  134 (305)
Q Consensus        74 -g~v~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-------------  134 (305)
                       +.|.+||++++   +.+.....+..+.+++|+|+++ +++.......++. ... ...+.......             
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP  202 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC
T ss_pred             CCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccCcEEEEeCCCCceeccccccccCCccccCccceeeec
Confidence             89999999884   3445556666789999999999 5544432111111 000 11111000000             


Q ss_pred             ----------------------------------------CCceEEEEeccCCCeeEEEEcC-CCCEEEEeeCCCcEEEE
Q 021925          135 ----------------------------------------GGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIW  173 (305)
Q Consensus       135 ----------------------------------------~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw  173 (305)
                                                              ..-.......+...+..++++| ++++++++  ++.|.+|
T Consensus       203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~  280 (349)
T 1jmx_B          203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKY  280 (349)
T ss_dssp             CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEE
T ss_pred             CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEE
Confidence                                                    0000011112234567889999 99999888  8899999


Q ss_pred             eCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC
Q 021925          174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE  232 (305)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  232 (305)
                      |+.+++.+..+.    ....+.+++|+|+++.|++++.++.|++||+++++.+..+...
T Consensus       281 d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          281 DLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             ETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             ECccCeEEEEEc----CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            999998887775    3345678999999999988888999999999999998887643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=2.2e-19  Score=145.06  Aligned_cols=212  Identities=12%  Similarity=0.123  Sum_probs=143.1

Q ss_pred             cccccceEEEEEcCCCCEEEEee-CCCceEEEEcCC-C--eeeEEecC---------CCcceEEEEEcCCCcEEEEEeCC
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADN-G--ERLGTYRG---------HNGAVWCCDVSRDSMTLITGSAD   73 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~-~--~~~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~d   73 (305)
                      ..|...+..++|+|+|++|++++ .++.|.+|++.. +  +.+..+..         +...+.+++|+|+|+.+++...+
T Consensus        82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~  161 (347)
T 3hfq_A           82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS  161 (347)
T ss_dssp             EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT
T ss_pred             ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC
Confidence            45677889999999999888887 679999999963 2  23333321         12348899999999966666678


Q ss_pred             CcEEEEecC-CCCeeEEE--e--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC--
Q 021925           74 QTAKLWNVE-TGAQLFTF--N--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ--  146 (305)
Q Consensus        74 g~v~vwd~~-~~~~~~~~--~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  146 (305)
                      +.|.+|++. +++.....  .  ....+..++|+|+++.++++...    ...+.++++....  ........+....  
T Consensus       162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~----~~~v~v~~~~~~~--g~~~~~~~~~~~~~~  235 (347)
T 3hfq_A          162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL----SSQIASLKYDTQT--GAFTQLGIVKTIPAD  235 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT----TTEEEEEEEETTT--TEEEEEEEEESSCTT
T ss_pred             CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC----CCEEEEEEecCCC--CceEEeeeeeecCCC
Confidence            899999998 45433221  2  23367789999999977665432    2334445443210  0011122222222  


Q ss_pred             ----CCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCC---cEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-CeEEE
Q 021925          147 ----GRINRAVWGPLNRTII-SAGEDAIVRIWDTETG---KLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KSAKL  217 (305)
Q Consensus       147 ----~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i  217 (305)
                          ..+..++|+|+|++|+ +...++.|.+||+...   +.+..+.   .+...+..++|+|+|++|++++.+ +.|.+
T Consensus       236 ~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  312 (347)
T 3hfq_A          236 YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS---TEGDFPRDFDLDPTEAFVVVVNQNTDNATL  312 (347)
T ss_dssp             CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE---CSSSCCCEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe---cCCCCcCeEEECCCCCEEEEEEcCCCcEEE
Confidence                3478899999999875 5556899999999732   3333333   445668899999999998888764 89999


Q ss_pred             E--EcCCceEEE
Q 021925          218 W--DARTLELIK  227 (305)
Q Consensus       218 w--d~~~~~~~~  227 (305)
                      |  |.++++...
T Consensus       313 ~~~d~~tg~l~~  324 (347)
T 3hfq_A          313 YARDLTSGKLSL  324 (347)
T ss_dssp             EEECTTTCCEEE
T ss_pred             EEEeCCCCeEEe
Confidence            9  555666553

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=5.3e-20  Score=158.82  Aligned_cols=231  Identities=9%  Similarity=0.064  Sum_probs=162.7

Q ss_pred             eEecccc-cceEEEEEcCCCCEEEEeeC---CCceEEEEcCC---CeeeEEecCCCcceEEEEEcCCCcE-EEEEeCCCc
Q 021925            4 ILMKGHE-RPLTYLKYNKDGDLLFSCAK---DHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRDSMT-LITGSADQT   75 (305)
Q Consensus         4 ~~l~~h~-~~v~~~~~~~~~~~l~s~~~---dg~v~iw~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~dg~   75 (305)
                      ..+..|. ..+..++|+|| +.+++++.   +...++|.+..   +... .+.... .+...+|+|+++. +++.+.++.
T Consensus        57 ~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~  133 (582)
T 3o4h_A           57 VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR  133 (582)
T ss_dssp             EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC
T ss_pred             EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC
Confidence            3455565 68999999999 77777765   45566765533   3332 443332 3446688887753 333344455


Q ss_pred             EEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (305)
Q Consensus        76 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (305)
                      +.+||+.+++.........  .+++|+|+|+.++.+...... ...+..+++.      . .....+..|.+.+..++|+
T Consensus       134 ~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~-~~~i~~~d~~------~-g~~~~l~~~~~~~~~~~~S  203 (582)
T 3o4h_A          134 VALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGG-RVSLFTSNLS------S-GGLRVFDSGEGSFSSASIS  203 (582)
T ss_dssp             EEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETT-EEEEEEEETT------T-CCCEEECCSSCEEEEEEEC
T ss_pred             ceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCC-CeEEEEEcCC------C-CCceEeecCCCccccceEC
Confidence            6699999887666555544  899999999999876542110 0223344332      1 2234667888889999999


Q ss_pred             CCCCEEEEeeCCC--cEEEEeCCCCcEeeeeccccCCccceEEEE--------EcCCCCEEEEEeCCCeEEEEEcCCceE
Q 021925          156 PLNRTIISAGEDA--IVRIWDTETGKLLKESDKETGHKKTITSLA--------KAADGSHFLTGSLDKSAKLWDARTLEL  225 (305)
Q Consensus       156 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~  225 (305)
                      |||+.|+++..++  .|++||+.+++.. .+.   .+...+..++        |+|||.++++++.||++++|++  ++.
T Consensus       204 pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~  277 (582)
T 3o4h_A          204 PGMKVTAGLETAREARLVTVDPRDGSVE-DLE---LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GER  277 (582)
T ss_dssp             TTSCEEEEEECSSCEEEEEECTTTCCEE-ECC---CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE
T ss_pred             CCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc---CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe
Confidence            9999999888888  8999999988876 444   4555565566        9999988999999999999999  665


Q ss_pred             EEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          226 IKTYVTERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       226 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      ..  .....+.+++|+ +++.+++++.+...
T Consensus       278 ~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p  305 (582)
T 3o4h_A          278 VE--APQGNHGRVVLW-RGKLVTSHTSLSTP  305 (582)
T ss_dssp             EC--CCSSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred             ec--cCCCceEEEEec-CCEEEEEEcCCCCC
Confidence            54  234568899999 99998888776553

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.86  E-value=4.3e-18  Score=134.37  Aligned_cols=238  Identities=10%  Similarity=0.005  Sum_probs=172.7

Q ss_pred             eEecccccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      ..+..+.....+++|+|+|+ +++++..++.|..|+..++  ...+..+...+.+++++|+|+++++...++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            34556677788999999998 7788888999999998877  56666677889999999999988877777899999998


Q ss_pred             CCCeeEEEe-----eCCCceEEEEecCCceEEEeCCcce----------eeeeeEEEEEeecccCCCCCceEEEEeccCC
Q 021925           83 TGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFM----------ELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (305)
Q Consensus        83 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (305)
                      +++......     ....+..++++|++++.++......          .......++.+...      .....+..+..
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~------g~~~~~~~~~~  172 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD------GTLSAPIRDRV  172 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT------SCEEEEECCCS
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC------CCEEEeecCCC
Confidence            887554332     1235678999999988776331000          00011233333211      22334455666


Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCcE---eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 021925          148 RINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  223 (305)
                      ....++|+|+++.+++.+.++.|.+||+. +++.   ...+.   .+...+..++++++|+++++.  ++.|.+||.. +
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~---~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g  246 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFT---VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G  246 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC---CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee---CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C
Confidence            77899999999988777778999999997 4544   22331   345566789999999866655  8899999986 7


Q ss_pred             eEEEEEeeCCCeeEEEe-cCCCCcEEEeeCCcE
Q 021925          224 ELIKTYVTERPVNAVTM-SPLLDHVCIGEPQTI  255 (305)
Q Consensus       224 ~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~  255 (305)
                      +.+..+.....+.+++| .|+++.|++++.++.
T Consensus       247 ~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~l  279 (296)
T 3e5z_A          247 DELGRVLTPQTTSNLCFGGPEGRTLYMTVSTEF  279 (296)
T ss_dssp             CEEEEEECSSCCCEEEEESTTSCEEEEEETTEE
T ss_pred             CEEEEEECCCCceeEEEECCCCCEEEEEcCCeE
Confidence            77777774333899999 689999999887753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=2.3e-20  Score=165.32  Aligned_cols=236  Identities=11%  Similarity=0.048  Sum_probs=159.3

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcc-----eEEEEEcCCCcEEEEEeCC---------Cc
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-----VWCCDVSRDSMTLITGSAD---------QT   75 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~-----v~~i~~~~~~~~l~s~~~d---------g~   75 (305)
                      .....+++|+|||++++++  ||.|++||+.+++....+.+|...     ...+.|||||++|+.++.+         +.
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            3456789999999988886  999999999999988777776543     2447899999999998876         56


Q ss_pred             EEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC---CCCCceEEEEeccC------
Q 021925           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---DQGGESVLILKGPQ------  146 (305)
Q Consensus        76 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------  146 (305)
                      +.+||+++++......+...+...+|+|+|+.++.+.+.      .+.+++......   ...+.....+.++.      
T Consensus        94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~------~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e  167 (740)
T 4a5s_A           94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNN------DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE  167 (740)
T ss_dssp             EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETT------EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred             EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECC------eEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence            679999998765544466789999999999999887653      333333221100   00000001122222      


Q ss_pred             ---CCeeEEEEcCCCCEEEEeeCCC------------------------------------cEEEEeCCC---Cc--Eee
Q 021925          147 ---GRINRAVWGPLNRTIISAGEDA------------------------------------IVRIWDTET---GK--LLK  182 (305)
Q Consensus       147 ---~~i~~~~~~~~~~~l~~~~~dg------------------------------------~i~iwd~~~---~~--~~~  182 (305)
                         +....+.|||||++|+.++.|.                                    .|++||+.+   ++  ...
T Consensus       168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~  247 (740)
T 4a5s_A          168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI  247 (740)
T ss_dssp             HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred             hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence               2224589999999999875321                                    588899988   63  222


Q ss_pred             eeccc---cCCccceEEEEEcCCCCEEEEEeC----CCeEEEEEcCCce----EE--EEE---eeCCCee-----EEEec
Q 021925          183 ESDKE---TGHKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLE----LI--KTY---VTERPVN-----AVTMS  241 (305)
Q Consensus       183 ~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~----~~--~~~---~~~~~v~-----~~~~~  241 (305)
                      .+...   .++...+..++|+|||+.++....    +..|++||+.+++    +.  ..+   .+...+.     .++|+
T Consensus       248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs  327 (740)
T 4a5s_A          248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT  327 (740)
T ss_dssp             EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred             EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence            33211   136778999999999997665433    3479999999887    22  111   1343343     78999


Q ss_pred             CCCCcEE-EeeCC
Q 021925          242 PLLDHVC-IGEPQ  253 (305)
Q Consensus       242 ~~~~~l~-~~~~~  253 (305)
                      |||+.++ ..+..
T Consensus       328 pDG~~l~~~~s~~  340 (740)
T 4a5s_A          328 LDGNSFYKIISNE  340 (740)
T ss_dssp             TTSSEEEEEEECT
T ss_pred             CCCCEEEEEEEcC
Confidence            9999877 55533

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=5.9e-20  Score=150.56  Aligned_cols=241  Identities=11%  Similarity=0.019  Sum_probs=161.1

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEE--EcCCCcEEEEE--------------
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD--VSRDSMTLITG--------------   70 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~--~~~~~~~l~s~--------------   70 (305)
                      .+|...+..+.|+|||+.|+.++.++.|++||+.+++....+..+...+....  ++|++++++..              
T Consensus        77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~  156 (388)
T 3pe7_A           77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK  156 (388)
T ss_dssp             CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred             eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence            34555555788999999999999999999999999988777776666565444  48899888742              


Q ss_pred             --------eCCCcEEEEecCCCCeeEEEeeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE
Q 021925           71 --------SADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (305)
Q Consensus        71 --------~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (305)
                              ..+..|.+||+.+++..........+..+.|+| +++.++........ .....++.+...     +.....
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~-~~~~~l~~~d~~-----~~~~~~  230 (388)
T 3pe7_A          157 KFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHD-LVDARMWLINED-----GTNMRK  230 (388)
T ss_dssp             HHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTT-TSSCSEEEEETT-----SCCCEE
T ss_pred             hhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCC-CCcceEEEEeCC-----CCceEE
Confidence                    244779999999998777667778889999999 99888766542100 001122322211     122233


Q ss_pred             EeccC--CCeeEEEEcCCCCEEEEeeC-CC----cEEEEeCCCCcEeeeeccccCCccc---eEEEEEcCCCCEEEEE--
Q 021925          142 LKGPQ--GRINRAVWGPLNRTIISAGE-DA----IVRIWDTETGKLLKESDKETGHKKT---ITSLAKAADGSHFLTG--  209 (305)
Q Consensus       142 ~~~~~--~~i~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~--  209 (305)
                      +..+.  ..+...+|+|+|+.|+..+. ++    .|++||+.+++...... ..++...   .....|+|||+.|+..  
T Consensus       231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~  309 (388)
T 3pe7_A          231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS-MPACSHLMSNYDGSLMVGDGSDAPVDVQ  309 (388)
T ss_dssp             SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE-ECCEEEEEECTTSSEEEEEECCC-----
T ss_pred             eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc-CCCceeeeecCCCCeEccCCCcceeEee
Confidence            33333  24778899999997765443 22    39999999887433221 1111100   1123689999988754  


Q ss_pred             -------eCCCeEEEEEcCCceEEEEEeeCC-----------CeeEEEecCCCCcEEEeeCCc
Q 021925          210 -------SLDKSAKLWDARTLELIKTYVTER-----------PVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       210 -------~~dg~i~iwd~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~~~  254 (305)
                             ..+..|++||+.+++......+..           .+.+++|+|||+.|+.++..+
T Consensus       310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~  372 (388)
T 3pe7_A          310 DDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH  372 (388)
T ss_dssp             -------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred             eccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC
Confidence                   456789999999887654444444           478899999999988776543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=1.3e-19  Score=148.55  Aligned_cols=236  Identities=11%  Similarity=0.015  Sum_probs=158.3

Q ss_pred             eEecccccceEE-----EEEcCCCCEEEEeeC-CCc--eEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCc
Q 021925            4 ILMKGHERPLTY-----LKYNKDGDLLFSCAK-DHT--PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT   75 (305)
Q Consensus         4 ~~l~~h~~~v~~-----~~~~~~~~~l~s~~~-dg~--v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~   75 (305)
                      ..+..|......     .+|+|||++|+.++. +|.  |.+||+.+++......++...+..+.|+||++.|+.++.++.
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~  103 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN  103 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence            346666666665     889999999998887 664  888899888887777666666667889999999999999999


Q ss_pred             EEEEecCCCCeeEEEeeCCC-ceEE--EEecCCceEEEeCCcc-----------------eeeeeeEEEEEeecccCCCC
Q 021925           76 AKLWNVETGAQLFTFNFDSP-ARSV--DFAVGDKLAVITTDPF-----------------MELNSAIHVKRIARDPADQG  135 (305)
Q Consensus        76 v~vwd~~~~~~~~~~~~~~~-v~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~  135 (305)
                      |.+||+.+++.......+.. +...  .+++++..++......                 ......+..+++.      .
T Consensus       104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~------~  177 (388)
T 3pe7_A          104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK------T  177 (388)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT------T
T ss_pred             EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC------C
Confidence            99999999987766664433 2223  3478888776432100                 0011223333321      1


Q ss_pred             CceEEEEeccCCCeeEEEEcC-CCCEEEEeeCC------CcEEEEeCCCCcEeeeeccccCCc--cceEEEEEcCCCCEE
Q 021925          136 GESVLILKGPQGRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHF  206 (305)
Q Consensus       136 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l  206 (305)
                      + ....+..+...+..++|+| +++.|+....+      ..|.++|...++. ..+.   .+.  ..+...+|+|||+.|
T Consensus       178 g-~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~---~~~~~~~~~~~~~spdg~~l  252 (388)
T 3pe7_A          178 G-ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVK---THAEGESCTHEFWVPDGSAL  252 (388)
T ss_dssp             C-CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESC---CCCTTEEEEEEEECTTSSCE
T ss_pred             C-ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEee---eCCCCcccccceECCCCCEE
Confidence            2 2344556677789999999 99988877653      3788888876543 3333   222  357788999999987


Q ss_pred             EEEeC-CC----eEEEEEcCCceEEEEEeeCC------CeeEEEecCCCCcEEEe
Q 021925          207 LTGSL-DK----SAKLWDARTLELIKTYVTER------PVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       207 ~~~~~-dg----~i~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~  250 (305)
                      +..+. ++    .|++||+.+++.........      .....+|+|||+.|+..
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          253 VYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             EEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred             EEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence            65443 22    49999999887543322221      12334799999988865

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=7.2e-18  Score=135.07  Aligned_cols=233  Identities=12%  Similarity=0.053  Sum_probs=167.4

Q ss_pred             ccceEEEEEcCCCCEEEEeeCC------------------------CceEEEEcCCCeeeEEec-CCCcceEEEEEcCCC
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKD------------------------HTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDS   64 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~d------------------------g~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~   64 (305)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++.+..+. ++-.....++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999888777                        479999998888876665 344578999999999


Q ss_pred             cEEEEEeCCCcEEEEecCCCC-eeEEEee----------CCCceEEEEec-CCceEEEeC-CcceeeeeeEEEEEeeccc
Q 021925           65 MTLITGSADQTAKLWNVETGA-QLFTFNF----------DSPARSVDFAV-GDKLAVITT-DPFMELNSAIHVKRIARDP  131 (305)
Q Consensus        65 ~~l~s~~~dg~v~vwd~~~~~-~~~~~~~----------~~~v~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  131 (305)
                      +++++...++.|++||..... .+..+..          -..+..++++| ++.++++.. .     ...+..++     
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~-----  172 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFS-----  172 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEEC-----
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEc-----
Confidence            988888889999999976442 4554421          22578899999 677777663 2     12222222     


Q ss_pred             CCCCCceEEEEec----------cCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc
Q 021925          132 ADQGGESVLILKG----------PQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA  200 (305)
Q Consensus       132 ~~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  200 (305)
                        ..+..+..+..          +......++++|+ ++.+++...++.|++||..+++.+..+... .+...+..++++
T Consensus       173 --~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~  249 (329)
T 3fvz_A          173 --PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYI  249 (329)
T ss_dssp             --TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEE
T ss_pred             --CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeec
Confidence              11233333321          2234789999998 666777778899999999988888877432 455678899999


Q ss_pred             C------CCCEEEEEeCCCeEEEEEcCCceEEEEEe----eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          201 A------DGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       201 ~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      |      +|+..++...+.+|++||..+++.+..+.    +...+..++++|+|.++++...++.
T Consensus       250 pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~  314 (329)
T 3fvz_A          250 PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNT  314 (329)
T ss_dssp             TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCC
T ss_pred             CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCE
Confidence            9      33333333345689999999999998874    4456899999999966666555554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.84  E-value=3.3e-17  Score=128.64  Aligned_cols=230  Identities=12%  Similarity=0.136  Sum_probs=164.7

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec------CCCcceEEEEE-cCCCcEEEEEeC-CCcEEEE
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR------GHNGAVWCCDV-SRDSMTLITGSA-DQTAKLW   79 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~------~~~~~v~~i~~-~~~~~~l~s~~~-dg~v~vw   79 (305)
                      +|-..+.+++++++|+++++...++.|.+||.. ++.+..+.      ++...+.++++ .++++.+++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455779999999999988888889999999976 66666553      23457899999 467766666543 7899999


Q ss_pred             ecCCCCeeEEEee--CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe--ccCCCeeEEEEc
Q 021925           80 NVETGAQLFTFNF--DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWG  155 (305)
Q Consensus        80 d~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~  155 (305)
                      | .+++.+..+..  ...+..+++.+++.++++....     ..+..++.       .++....+.  .+...+..++++
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~-------~g~~~~~~~~~~~~~~p~~i~~~  172 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKV-----MRVIIFDQ-------NGNVLHKFGCSKHLEFPNGVVVN  172 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTT-----TEEEEECT-------TSCEEEEEECTTTCSSEEEEEEC
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCC-----CEEEEEcC-------CCCEEEEeCCCCccCCcEEEEEC
Confidence            9 56777766642  3467899999999877665431     12222221       123333333  344568999999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC-eEEEEEcCCceEEEEEeeC--
Q 021925          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTE--  232 (305)
Q Consensus       156 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~--  232 (305)
                      |+++.+++...++.|++||.. ++.+..+.. .++...+..++++++|+++++...++ .|.+||. +++.+..+...  
T Consensus       173 ~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~  249 (286)
T 1q7f_A          173 DKQEIFISDNRAHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVK  249 (286)
T ss_dssp             SSSEEEEEEGGGTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSC
T ss_pred             CCCCEEEEECCCCEEEEEcCC-CCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCC
Confidence            999988777788999999974 555555542 12336788999999999888888776 9999995 56666666532  


Q ss_pred             -CCeeEEEecCCCCcEEEeeCCcE
Q 021925          233 -RPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       233 -~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                       ..+.+++++|+|+++++ +.++.
T Consensus       250 ~~~~~~i~~~~~g~l~vs-~~~~~  272 (286)
T 1q7f_A          250 HAQCFDVALMDDGSVVLA-SKDYR  272 (286)
T ss_dssp             CSCEEEEEEETTTEEEEE-ETTTE
T ss_pred             CCcceeEEECCCCcEEEE-CCCCe
Confidence             23679999999986666 45554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.84  E-value=6.2e-18  Score=136.48  Aligned_cols=221  Identities=12%  Similarity=0.017  Sum_probs=151.5

Q ss_pred             cceEEEEEcCCCCEEEEeeCC---C--ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC------------
Q 021925           11 RPLTYLKYNKDGDLLFSCAKD---H--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD------------   73 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~d---g--~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d------------   73 (305)
                      ..+..++|+|||+.|+.++.+   +  .|.+|++.+++....... .. +..++|+|||+.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            457789999999999987654   3  478888888776555443 34 9999999999988887642            


Q ss_pred             ---------------CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee-ee-eEEEEEeecccCCCCC
Q 021925           74 ---------------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-NS-AIHVKRIARDPADQGG  136 (305)
Q Consensus        74 ---------------g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~  136 (305)
                                     ..|.+||+.+++.+..+..+ .+..+.|+|++ +++++....... .. ...++.+.      .+
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d------~~  208 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE------DG  208 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE------TT
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC------CC
Confidence                           57999999888763444444 88999999999 666553221000 01 22333333      11


Q ss_pred             ceEEEEeccCCCeeEEEEcCCCCEEEEeeCC--------CcEEEEeCCCCcEeeeeccccCCccceEE-EEEcCCCCEEE
Q 021925          137 ESVLILKGPQGRINRAVWGPLNRTIISAGED--------AIVRIWDTETGKLLKESDKETGHKKTITS-LAKAADGSHFL  207 (305)
Q Consensus       137 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~  207 (305)
                      + ...+..+ ..+..+  +|+|++|+.++.+        ..|.+||  +++......   .+...+.. +.|+ ++ +++
T Consensus       209 ~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~~~~~~~~~~~~s-dg-~~~  277 (347)
T 2gop_A          209 K-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD---EVDRGVGQAKIKD-GK-VYF  277 (347)
T ss_dssp             E-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST---TCCSEEEEEEEET-TE-EEE
T ss_pred             c-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc---cCCcccCCccEEc-Cc-EEE
Confidence            2 2333333 444444  9999988877644        4688888  555443333   45667876 8999 88 889


Q ss_pred             EEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          208 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       208 ~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      +++.++.+++| +.+++......+...|.+++|+|  ..+++++.++.
T Consensus       278 ~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~  322 (347)
T 2gop_A          278 TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATR  322 (347)
T ss_dssp             EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSS
T ss_pred             EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCC
Confidence            99999999999 88776655555667789999999  56666665553

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.83  E-value=5.9e-17  Score=130.01  Aligned_cols=241  Identities=10%  Similarity=0.009  Sum_probs=167.6

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC----CcEEEEec
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNV   81 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----g~v~vwd~   81 (305)
                      +.++...+.+++|+|+|++++++..++.|.+||.++++.......+...+.+++++|+++++++...+    +.|.+||.
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence            45666778999999999988888889999999998887665544566789999999999888777666    68999999


Q ss_pred             CCCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           82 ETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        82 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      ++++....+.   ....+..++++|++.+.++...... ......++.+...     ......+......+..++|+|++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS-TNPLGGVYYVSPD-----FRTVTPIIQNISVANGIALSTDE  193 (333)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT-TBCCEEEEEECTT-----SCCEEEEEEEESSEEEEEECTTS
T ss_pred             CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc-cCCCceEEEEeCC-----CCEEEEeecCCCcccceEECCCC
Confidence            8776653332   3346788999999987776543110 0112233333211     11122223334457889999999


Q ss_pred             CEEEE-eeCCCcEEEEeCCC-CcEeeee-----ccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925          159 RTIIS-AGEDAIVRIWDTET-GKLLKES-----DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (305)
Q Consensus       159 ~~l~~-~~~dg~i~iwd~~~-~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  231 (305)
                      +.++. .+.++.|.+||+.+ +.....+     ....++ ..+..++++++|+++++...++.|.+||. +++.+..+..
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~  271 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI  271 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc
Confidence            86654 45678999999964 3322211     111112 46788999999998888878899999998 5677776663


Q ss_pred             CC-------CeeEEEecCCCCcEEEeeCCc
Q 021925          232 ER-------PVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       232 ~~-------~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      ..       .+.+++|+|+++.|++++.++
T Consensus       272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          272 PGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            32       588999999988877766553

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=5.8e-18  Score=137.17  Aligned_cols=228  Identities=13%  Similarity=0.060  Sum_probs=155.0

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeC----------CCceEEEEcCCCeeeEEecCC------CcceEEEEEcCCCcEEEE
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAK----------DHTPTVWFADNGERLGTYRGH------NGAVWCCDVSRDSMTLIT   69 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~s   69 (305)
                      +..+..+  .++|+|||++++++..          ++.|.+||..+++.+.++...      ......++++|||++|++
T Consensus        47 i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v  124 (361)
T 2oiz_A           47 VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVL  124 (361)
T ss_dssp             EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEE
T ss_pred             ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEE
Confidence            3344444  8999999999998863          567999999999888877632      234678999999999998


Q ss_pred             EeC--CCcEEEEecCCCCeeEE-EeeCC----------CceEEEEecCCceEEEeCCcceeeee----------------
Q 021925           70 GSA--DQTAKLWNVETGAQLFT-FNFDS----------PARSVDFAVGDKLAVITTDPFMELNS----------------  120 (305)
Q Consensus        70 ~~~--dg~v~vwd~~~~~~~~~-~~~~~----------~v~~~~~~~~~~~~~~~~~~~~~~~~----------------  120 (305)
                      +..  ++.|.+||+++++.+.. +....          ...-+++++++..+....+.......                
T Consensus       125 ~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~  204 (361)
T 2oiz_A          125 QNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIF  204 (361)
T ss_dssp             EEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBC
T ss_pred             ECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceE
Confidence            864  58999999999988777 44322          12335556666655544321000000                


Q ss_pred             -----------------eEEEEEeecccCCCCCceEEEEec------c----CCCeeEEEEcCCCCEEEEeeC-------
Q 021925          121 -----------------AIHVKRIARDPADQGGESVLILKG------P----QGRINRAVWGPLNRTIISAGE-------  166 (305)
Q Consensus       121 -----------------~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~i~~~~~~~~~~~l~~~~~-------  166 (305)
                                       .+...++.    .........+..      +    ......++++|+++.++++..       
T Consensus       205 ~~~~~~g~~~~~~~~~~~v~v~d~~----~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~  280 (361)
T 2oiz_A          205 IAPALDKDKAHFVSYYGNVYSADFS----GDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT  280 (361)
T ss_dssp             SCCEECSSEEEEEBTTSEEEEEECS----SSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred             EEecccCCEEEEEeCCCeEEEEEec----CCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence                             00000000    000000000000      0    011123789999887776543       


Q ss_pred             ----CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eEEEEE-eeCCCeeEEE
Q 021925          167 ----DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTY-VTERPVNAVT  239 (305)
Q Consensus       167 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~-~~~~~v~~~~  239 (305)
                          .+.|.+||+.+++.+..+.   .+.  +.+++|+|+|++|++++. +.|.+||..++  +.+.++ ..+.....++
T Consensus       281 ~~~~~~~v~viD~~t~~~v~~i~---~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~  354 (361)
T 2oiz_A          281 HKFPAAEIWVMDTKTKQRVARIP---GRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQ  354 (361)
T ss_dssp             TTCCCSEEEEEETTTTEEEEEEE---CTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEE
T ss_pred             ccCCCceEEEEECCCCcEEEEEe---cCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEE
Confidence                3489999999999999887   343  899999999999998887 99999999999  999987 4777789999


Q ss_pred             ecCCCC
Q 021925          240 MSPLLD  245 (305)
Q Consensus       240 ~~~~~~  245 (305)
                      ++|+|+
T Consensus       355 ~~p~G~  360 (361)
T 2oiz_A          355 FHPVGG  360 (361)
T ss_dssp             ECCCSC
T ss_pred             ecCCCC
Confidence            999986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=3.6e-20  Score=163.80  Aligned_cols=237  Identities=9%  Similarity=-0.023  Sum_probs=154.0

Q ss_pred             ceEEEEEcCCCCEEEEeeC---------CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925           12 PLTYLKYNKDGDLLFSCAK---------DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~---------dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+.+++|||||++|++++.         ++.|++||+.+++.+.... ....+..++|+|||+.|+++. ++.|++||+.
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~  138 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP  138 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence            3899999999999998876         7899999999887631111 135688999999999999886 6899999998


Q ss_pred             CCCeeEEEeeC-------------------CCceEEEEecCCceEEEeCCcce--e------------------------
Q 021925           83 TGAQLFTFNFD-------------------SPARSVDFAVGDKLAVITTDPFM--E------------------------  117 (305)
Q Consensus        83 ~~~~~~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~--~------------------------  117 (305)
                      +++........                   ....+++|+|+|+.++.+.....  .                        
T Consensus       139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g  218 (719)
T 1z68_A          139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG  218 (719)
T ss_dssp             TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred             CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence            88765433211                   11258999999999888653210  0                        


Q ss_pred             ---eeeeEEEEEeecccCCCCCceE---EEEeccCCCeeEEEEcCCCCEEEEeeCC----CcEEEEe----CCCCcEeee
Q 021925          118 ---LNSAIHVKRIARDPADQGGESV---LILKGPQGRINRAVWGPLNRTIISAGED----AIVRIWD----TETGKLLKE  183 (305)
Q Consensus       118 ---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~  183 (305)
                         ....+.++++....... ...+   ..+.+|...+..++|+||++.+++....    ..|.+||    ..+++....
T Consensus       219 ~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~  297 (719)
T 1z68_A          219 AKNPVVRIFIIDTTYPAYVG-PQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT  297 (719)
T ss_dssp             SCCCEEEEEEEESSCHHHHC-CEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred             CCCCeeEEEEEECCCCCccc-eeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence               01123333332110000 0000   1123467778999999998777764432    2488999    777765544


Q ss_pred             ec-cccCCccceE-----EEEEcCCCCEEEE--EeCCC--eEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeC
Q 021925          184 SD-KETGHKKTIT-----SLAKAADGSHFLT--GSLDK--SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       184 ~~-~~~~~~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                      +. ....+...+.     .+.|+|||+.|+.  +..+|  .|++||+.+++. ..+. +...+..+.++ +++.|+..+.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~~  375 (719)
T 1z68_A          298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSSN  375 (719)
T ss_dssp             GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred             EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEEe
Confidence            31 0014555555     7899999996654  44455  577788877663 3333 44557777777 8887777665


Q ss_pred             C
Q 021925          253 Q  253 (305)
Q Consensus       253 ~  253 (305)
                      +
T Consensus       376 ~  376 (719)
T 1z68_A          376 E  376 (719)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=9.6e-18  Score=136.15  Aligned_cols=219  Identities=13%  Similarity=0.131  Sum_probs=144.0

Q ss_pred             cccceEEEEEcCCCCEEEEee-CCCceEEEEcCCCeeeEEe------c--------CCCcceEEEEEcCCCcEEEEEe-C
Q 021925            9 HERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTY------R--------GHNGAVWCCDVSRDSMTLITGS-A   72 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~------~--------~~~~~v~~i~~~~~~~~l~s~~-~   72 (305)
                      +......+++  ++++|++++ .++.|.+|++.....+..+      .        .+...+.+++|+|+|++|++++ .
T Consensus        98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  175 (361)
T 3scy_A           98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG  175 (361)
T ss_dssp             SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence            4456677777  788777766 5789999999754332211      1        1123468899999999776555 4


Q ss_pred             CCcEEEEecCCCCe------e--------EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCce
Q 021925           73 DQTAKLWNVETGAQ------L--------FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES  138 (305)
Q Consensus        73 dg~v~vwd~~~~~~------~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (305)
                      ++.|.+|++.....      +        ........+..++|+|+++.++++...    ...+.++++...    ....
T Consensus       176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----~~~v~v~~~~~g----~~~~  247 (361)
T 3scy_A          176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI----GGTVIAFRYADG----MLDE  247 (361)
T ss_dssp             TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT----TCEEEEEEEETT----EEEE
T ss_pred             CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC----CCeEEEEEecCC----ceEE
Confidence            88999999875442      1        122245567899999999977766521    234555555411    0111


Q ss_pred             EEEEe---ccCCCeeEEEEcCCCCEEEEeeCC--CcEEEEeCC--CCc--EeeeeccccCCccceEEEEEcCCCCEEEEE
Q 021925          139 VLILK---GPQGRINRAVWGPLNRTIISAGED--AIVRIWDTE--TGK--LLKESDKETGHKKTITSLAKAADGSHFLTG  209 (305)
Q Consensus       139 ~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~--~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  209 (305)
                      ...+.   .+......++|+|+|++|+++..+  +.|.+|++.  +++  .+..+.   . ...+..++|+|+|++|+++
T Consensus       248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~---~-g~~~~~~~~spdg~~l~~~  323 (361)
T 3scy_A          248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL---T-GIHPRNFIITPNGKYLLVA  323 (361)
T ss_dssp             EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE---C-SSCCCEEEECTTSCEEEEE
T ss_pred             eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec---C-CCCCceEEECCCCCEEEEE
Confidence            22222   223456799999999998776654  899999996  344  333333   2 4567889999999998888


Q ss_pred             e-CCCeEEEE--EcCCceEEEEEe--eCCCeeEEEec
Q 021925          210 S-LDKSAKLW--DARTLELIKTYV--TERPVNAVTMS  241 (305)
Q Consensus       210 ~-~dg~i~iw--d~~~~~~~~~~~--~~~~v~~~~~~  241 (305)
                      + .++.|.+|  |..+++......  +...+.|++|.
T Consensus       324 ~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          324 CRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             ETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             ECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            7 57899996  555676654432  34467888875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.81  E-value=1.9e-18  Score=141.87  Aligned_cols=228  Identities=11%  Similarity=-0.046  Sum_probs=152.8

Q ss_pred             EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEE-------------------EEEcCCCcEEEEE----
Q 021925           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-------------------CDVSRDSMTLITG----   70 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~-------------------i~~~~~~~~l~s~----   70 (305)
                      ..+.|+|||+.|+.++.++.|++||+.+++.......+......                   +.|+|+++.++.+    
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~  163 (396)
T 3c5m_A           84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH  163 (396)
T ss_dssp             TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred             ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence            34789999999999999999999999988766655544443333                   3567777766554    


Q ss_pred             -eCCCcEEEEecCCCCeeEEEeeCCCceEEEEec-CCceEEEeCCcce-eeeeeEEEEEeecccCCCCCceEEEEecc--
Q 021925           71 -SADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFM-ELNSAIHVKRIARDPADQGGESVLILKGP--  145 (305)
Q Consensus        71 -~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  145 (305)
                       ..+..|.+||+.+++..........+..+.|+| ++..++....... .....+..++..      . .....+..+  
T Consensus       164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~------~-~~~~~l~~~~~  236 (396)
T 3c5m_A          164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED------G-SNVRKIKEHAE  236 (396)
T ss_dssp             TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT------S-CCCEESSCCCT
T ss_pred             CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC------C-CceeEeeccCC
Confidence             356789999999988777667778889999999 7776655543111 000223333321      1 111222222  


Q ss_pred             CCCeeEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEEe---------
Q 021925          146 QGRINRAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGS---------  210 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~---------  210 (305)
                      ...+..++|+|+|++|+.++.+     +.|++||+.+++......    .. ... +.|+| +|+++++++         
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~----~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~  310 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV----MP-PCS-HLMSNFDGSLMVGDGCDAPVDVAD  310 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE----CC-SEE-EEEECSSSSEEEEEECCC------
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee----CC-CCC-CCccCCCCceEEEecCCcceeecc
Confidence            2347788999999988776543     449999998876543322    11 123 88999 999888754         


Q ss_pred             -------CCCeEEEEEcCCceEEEEEeeCC-----------CeeEEEecCCCCcEEEeeCCc
Q 021925          211 -------LDKSAKLWDARTLELIKTYVTER-----------PVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       211 -------~dg~i~iwd~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~~~  254 (305)
                             .++.|++||+.+++......+..           .+..++|+|+|+.|+.++..+
T Consensus       311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~  372 (396)
T 3c5m_A          311 ADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE  372 (396)
T ss_dssp             ----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred             ccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC
Confidence                   34789999998877543333333           256789999999988876543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.81  E-value=5.7e-17  Score=126.16  Aligned_cols=212  Identities=12%  Similarity=0.039  Sum_probs=163.4

Q ss_pred             CCCEEEEeeCCCceEEEEcCCCeeeEEecCCC-cceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeC--CCce
Q 021925           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD--SPAR   97 (305)
Q Consensus        21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~~v~   97 (305)
                      .++.|++++.|+.|++||.++++.+.++..+. ..+.++.++|+|+.++  +.++.|..||. +++.+..+..+  ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            45789999999999999999999999998766 4789999999999888  34678999998 89999988854  4677


Q ss_pred             EEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe------ccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925           98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK------GPQGRINRAVWGPLNRTIISAGEDAIVR  171 (305)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~  171 (305)
                      ++.+.++++.+++....      ...+..+.     ..++.+..+.      .+......++..++|+++++...++.|.
T Consensus        81 ~~~~~~dG~~lv~~~~~------~~~v~~vd-----~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~  149 (276)
T 3no2_A           81 TARILPDGNALVAWCGH------PSTILEVN-----MKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVR  149 (276)
T ss_dssp             EEEECTTSCEEEEEEST------TEEEEEEC-----TTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEE
T ss_pred             ccEECCCCCEEEEecCC------CCEEEEEe-----CCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEE
Confidence            88999999998886541      11111111     1223332222      1223455677899999999999999999


Q ss_pred             EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee-C------CCeeEEEecCCC
Q 021925          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-E------RPVNAVTMSPLL  244 (305)
Q Consensus       172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~------~~v~~~~~~~~~  244 (305)
                      .||.. ++.+.++..    ...+.++...++|+.+++++.+++|..+|..+++.+.++.. .      ..+..++..++|
T Consensus       150 ~~d~~-G~~~w~~~~----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G  224 (276)
T 3no2_A          150 EIAPN-GQLLNSVKL----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNG  224 (276)
T ss_dssp             EECTT-SCEEEEEEC----SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTS
T ss_pred             EECCC-CCEEEEEEC----CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCC
Confidence            99998 999888862    23455677889999999999889999999999999999862 1      126788889999


Q ss_pred             CcEEEee
Q 021925          245 DHVCIGE  251 (305)
Q Consensus       245 ~~l~~~~  251 (305)
                      ..+++..
T Consensus       225 ~i~v~~~  231 (276)
T 3no2_A          225 GLYICNW  231 (276)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEec
Confidence            8887764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=3.8e-18  Score=149.48  Aligned_cols=247  Identities=10%  Similarity=-0.051  Sum_probs=163.9

Q ss_pred             EecccccceEEEEEcCCCCEEEEe--eCCCceEEEEcCCCeeeEEecCCCcceE---------EEEEc--CCCcE-EEEE
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSC--AKDHTPTVWFADNGERLGTYRGHNGAVW---------CCDVS--RDSMT-LITG   70 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~--~~dg~v~iw~~~~~~~~~~~~~~~~~v~---------~i~~~--~~~~~-l~s~   70 (305)
                      .+.+|...+..+++++++-++++.  +.++...||....+.....+..|...+.         ...|+  |||+. |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            367899999999999887667766  5688899998655555667776766666         56665  99988 7765


Q ss_pred             eC-CCcEEEEecC--C-CCeeEEEe-----eCCCceEEEEecCCceEEEeCCcce-----eeeeeEEEEEeecccCCCCC
Q 021925           71 SA-DQTAKLWNVE--T-GAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFM-----ELNSAIHVKRIARDPADQGG  136 (305)
Q Consensus        71 ~~-dg~v~vwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  136 (305)
                      +. +..|.++++.  + ++......     +...+..++|+|+++.++.+.....     .....+..+++..... ...
T Consensus        98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~  176 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA-ADR  176 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT-TCG
T ss_pred             ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc-ccC
Confidence            54 5667777765  3 44322222     2345778999999998887764210     1112333343321000 000


Q ss_pred             ceEEEEe-ccCCCeeEEEEcCCCCEEEEeeCC--------CcEEEEeCC-CCc--EeeeeccccCCccceEEEEEcCCCC
Q 021925          137 ESVLILK-GPQGRINRAVWGPLNRTIISAGED--------AIVRIWDTE-TGK--LLKESDKETGHKKTITSLAKAADGS  204 (305)
Q Consensus       137 ~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~~--~~~~~~~~~~~~~~v~~~~~~~~~~  204 (305)
                      .....+. .+...+..++|+|||++|+.++.+        ..|++||+. +++  ....+.  .++...+..++|+|||+
T Consensus       177 ~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--~~~~~~~~~~~~spdg~  254 (662)
T 3azo_A          177 SAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL--GGPEEAIAQAEWAPDGS  254 (662)
T ss_dssp             GGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--EETTBCEEEEEECTTSC
T ss_pred             CceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--CCCCceEcceEECCCCe
Confidence            1223444 555678889999999999987754        379999998 562  233332  13567899999999999


Q ss_pred             EEEEEeCCC--eEEEEEcCCceEEEEEeeCCC---------eeEEEecCCCCcEEEeeCCcE
Q 021925          205 HFLTGSLDK--SAKLWDARTLELIKTYVTERP---------VNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       205 ~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ++++++.++  .|++||+.+++......+...         +.+++|+|+++++++++. +.
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~  315 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA  315 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence            888888888  677777767765544332221         467889999998888876 54

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=1.4e-17  Score=145.96  Aligned_cols=232  Identities=13%  Similarity=0.024  Sum_probs=153.3

Q ss_pred             eEecccccceE---------EEEEc--CCCCE-EEEeeC-CCceEEEEcC--CCeeeEEecC-----CCcceEEEEEcCC
Q 021925            4 ILMKGHERPLT---------YLKYN--KDGDL-LFSCAK-DHTPTVWFAD--NGERLGTYRG-----HNGAVWCCDVSRD   63 (305)
Q Consensus         4 ~~l~~h~~~v~---------~~~~~--~~~~~-l~s~~~-dg~v~iw~~~--~~~~~~~~~~-----~~~~v~~i~~~~~   63 (305)
                      ..+..|...+.         ...|+  |||+. |+.++. +..|.++++.  .......+..     |...+.+++|+||
T Consensus        61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD  140 (662)
T 3azo_A           61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE  140 (662)
T ss_dssp             EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT
T ss_pred             ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC
Confidence            44566666666         66666  99998 776554 4566666654  2033455555     6778999999999


Q ss_pred             CcEEEEEeCC----------CcEEEEecCC------CCeeEEE-eeCCCceEEEEecCCceEEEeCCcce-e--eeeeEE
Q 021925           64 SMTLITGSAD----------QTAKLWNVET------GAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFM-E--LNSAIH  123 (305)
Q Consensus        64 ~~~l~s~~~d----------g~v~vwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~-~--~~~~~~  123 (305)
                      |+.|++++.+          ..|.+||+.+      ++..... .....+..++|+|+++.++....... .  ....+.
T Consensus       141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~  220 (662)
T 3azo_A          141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELK  220 (662)
T ss_dssp             TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEE
T ss_pred             CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEE
Confidence            9999998876          5899999987      5544333 34456778899999998876652211 0  012344


Q ss_pred             EEEeecccCCCCC---ceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC--cEEEEeCCCCcEeeeeccccCCccc-----
Q 021925          124 VKRIARDPADQGG---ESVLILKGPQGRINRAVWGPLNRTIISAGEDA--IVRIWDTETGKLLKESDKETGHKKT-----  193 (305)
Q Consensus       124 ~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~-----  193 (305)
                      ++++..     .+   +.......+...+..+.|+|||+++++++.++  .|.+||+.+++......   .+...     
T Consensus       221 ~~d~~~-----~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~---~~~~~~~p~w  292 (662)
T 3azo_A          221 TARVTE-----DGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR---REEEFAGPLW  292 (662)
T ss_dssp             EEEECT-----TSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC---CSSBSSCCCC
T ss_pred             EEEECC-----CCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc---ccccccCccc
Confidence            444431     12   23334445578899999999999877888888  67777776666544332   12111     


Q ss_pred             ---eEEEEEcCCCCEEEEEeCCCeEEEE--EcCCceEEEEEe-eCCCeeEEEecCCCCc
Q 021925          194 ---ITSLAKAADGSHFLTGSLDKSAKLW--DARTLELIKTYV-TERPVNAVTMSPLLDH  246 (305)
Q Consensus       194 ---v~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~-~~~~v~~~~~~~~~~~  246 (305)
                         +..++|+|+++++++++. +.+++|  |+.+++ +..+. +...+..+ ++++++.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~  348 (662)
T 3azo_A          293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGTR  348 (662)
T ss_dssp             STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEETTE
T ss_pred             cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecCCCE
Confidence               567899999999999998 999999  655555 45554 44556665 1444443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.79  E-value=5.7e-17  Score=143.03  Aligned_cols=238  Identities=10%  Similarity=-0.029  Sum_probs=160.9

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCC-----ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCc-------
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDH-----TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT-------   75 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~-------   75 (305)
                      +|...+..++|||||++||.++.++     .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3445688999999999998776543     8999999999876533222 23678999999999999888766       


Q ss_pred             ---------EEEEecCCCCee--EEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC-CCceEE
Q 021925           76 ---------AKLWNVETGAQL--FTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-GGESVL  140 (305)
Q Consensus        76 ---------v~vwd~~~~~~~--~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  140 (305)
                               |++|++.+++..  ..+.   ++.....+.|+|+++.++............+.++++....... ......
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     999999887632  2223   2334678999999998887754221112334444443200000 111344


Q ss_pred             EEeccCCCeeEEEEcCCCCEEEEeeCC----CcEEEEeCCCCcE--eeeeccccCCc--cceEEEEEcCCCCEEEEEeCC
Q 021925          141 ILKGPQGRINRAVWGPLNRTIISAGED----AIVRIWDTETGKL--LKESDKETGHK--KTITSLAKAADGSHFLTGSLD  212 (305)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~--~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d  212 (305)
                      .+..+...+.. .|+|+|+.|+..+.+    +.|.+||+.++..  ...+.   .+.  ..+..++|++++.++++...|
T Consensus       281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV---PEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc---CCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence            55566665554 588999887766553    3699999987642  23332   232  368889999888888888888


Q ss_pred             Ce--EEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEe
Q 021925          213 KS--AKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       213 g~--i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~  250 (305)
                      +.  |++||+.+++.+..+. +...+..++++|+++.++..
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred             CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEE
Confidence            85  6667876787766666 45567889999999876644

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=3.1e-17  Score=133.38  Aligned_cols=204  Identities=7%  Similarity=-0.034  Sum_probs=136.7

Q ss_pred             ceEEEEEcCCCCE--EEEee-------------CCCceEEEEcC-CCeeeEEec----CCCcceEEEEEcCCCcEEEEEe
Q 021925           12 PLTYLKYNKDGDL--LFSCA-------------KDHTPTVWFAD-NGERLGTYR----GHNGAVWCCDVSRDSMTLITGS   71 (305)
Q Consensus        12 ~v~~~~~~~~~~~--l~s~~-------------~dg~v~iw~~~-~~~~~~~~~----~~~~~v~~i~~~~~~~~l~s~~   71 (305)
                      .+.+++|+|+|++  ++++.             .+|.+.+|++. +++....+.    .+...+.+++|+|||++|++++
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            3566899999994  55553             68999999997 465544443    2456799999999999888765


Q ss_pred             C-CCcEEEEecC-CCCeeE--EEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceE---EE
Q 021925           72 A-DQTAKLWNVE-TGAQLF--TFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV---LI  141 (305)
Q Consensus        72 ~-dg~v~vwd~~-~~~~~~--~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  141 (305)
                      . ++.|.+||+. +++...  .+.   +...+..++|+|+++.++++...    ...+.+++....    .++..   ..
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~----~~~v~v~~~~~~----~g~~~~~~~~  235 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA----GNRICEYVIDPA----THMPVYTHHS  235 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT----TTEEEEEEECTT----TCCEEEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC----CCeEEEEEEeCC----CCcEEEccce
Confidence            4 6799999998 676532  233   14568899999999988776431    123344443210    11111   11


Q ss_pred             Ee-------ccCC------CeeEEE-EcCCCCEEEEeeCCC------cEEEEeCC-CCcEeeeeccccCCccceEEEEEc
Q 021925          142 LK-------GPQG------RINRAV-WGPLNRTIISAGEDA------IVRIWDTE-TGKLLKESDKETGHKKTITSLAKA  200 (305)
Q Consensus       142 ~~-------~~~~------~i~~~~-~~~~~~~l~~~~~dg------~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~  200 (305)
                      +.       ++..      .+..++ |+|+|++|++++.+.      .|.+|++. +++..........+...+..++|+
T Consensus       236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~s  315 (365)
T 1jof_A          236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVS  315 (365)
T ss_dssp             EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEE
T ss_pred             EEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceec
Confidence            11       1222      478899 999999988776432      89999996 565433111011234455678999


Q ss_pred             C---CCCEEEEEeCC-CeEEEEEcCCc
Q 021925          201 A---DGSHFLTGSLD-KSAKLWDARTL  223 (305)
Q Consensus       201 ~---~~~~l~~~~~d-g~i~iwd~~~~  223 (305)
                      |   +|++|++++.+ +.|.+|++...
T Consensus       316 p~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          316 PCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            9   89999998875 89999998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.79  E-value=3.4e-17  Score=134.39  Aligned_cols=223  Identities=13%  Similarity=0.069  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCEEEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925           13 LTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~   89 (305)
                      +..++|+|||++|+.+...   ..|.+||+.+++.......+......+.|+|||+.|+.++.++.|.+||+.+++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            7788999999998877543   3688889888876544333333233478999999999999999999999998876655


Q ss_pred             EeeCCCceEEEEecCCceEEEeCCcc-----------------e--------eeeeeEEEEEeecccCCCCCceEEEEec
Q 021925           90 FNFDSPARSVDFAVGDKLAVITTDPF-----------------M--------ELNSAIHVKRIARDPADQGGESVLILKG  144 (305)
Q Consensus        90 ~~~~~~v~~~~~~~~~~~~~~~~~~~-----------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (305)
                      ...+..     +++++..++......                 .        .....+..+++.      .++ ...+..
T Consensus       118 ~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~------~g~-~~~~~~  185 (396)
T 3c5m_A          118 YTVDEE-----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE------TGE-LEVIHQ  185 (396)
T ss_dssp             EECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETT------TCC-EEEEEE
T ss_pred             Eecccc-----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECC------CCc-EEeecc
Confidence            553322     444444443321100                 0        011122222221      122 233335


Q ss_pred             cCCCeeEEEEcC-CCCEEEEeeCC------CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----
Q 021925          145 PQGRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----  212 (305)
Q Consensus       145 ~~~~i~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----  212 (305)
                      +...+..+.|+| +++.|+..+.+      ..|.+||+..++.. .+.. ......+..++|+|+|+.|+.++.+     
T Consensus       186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (396)
T 3c5m_A          186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTD  263 (396)
T ss_dssp             ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred             CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-Eeec-cCCCccccceEECCCCCEEEEEecCCCCcc
Confidence            667789999999 78877766543      46889998765433 2321 0113468889999999988777654     


Q ss_pred             CeEEEEEcCCceEEEEEeeCCCeeEEEecC-CCCcEEEee
Q 021925          213 KSAKLWDARTLELIKTYVTERPVNAVTMSP-LLDHVCIGE  251 (305)
Q Consensus       213 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  251 (305)
                      +.|++||+.+++........ ... +.|+| +|+++++++
T Consensus       264 ~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          264 RVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             EEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEE
T ss_pred             ceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEec
Confidence            45999999988765433322 233 89999 999888754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=2e-17  Score=146.51  Aligned_cols=242  Identities=9%  Similarity=-0.017  Sum_probs=152.9

Q ss_pred             Eecccccc-----eEEEEEcCCCCEEEEeeCC---------CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEE
Q 021925            5 LMKGHERP-----LTYLKYNKDGDLLFSCAKD---------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG   70 (305)
Q Consensus         5 ~l~~h~~~-----v~~~~~~~~~~~l~s~~~d---------g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~   70 (305)
                      ++.+|...     ...++|||||++|+.++.+         +.+.+||+.+++.. .+..|.+.+..++|||||+.||.+
T Consensus        51 ~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~  129 (740)
T 4a5s_A           51 FLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV  129 (740)
T ss_dssp             EECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE
T ss_pred             EEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE
Confidence            35566532     2448899999999998876         56679999998864 466678889999999999999988


Q ss_pred             eCCCcEEEEecCCCCeeEEEeeC-------------------CCceEEEEecCCceEEEeCCcce--ee-----------
Q 021925           71 SADQTAKLWNVETGAQLFTFNFD-------------------SPARSVDFAVGDKLAVITTDPFM--EL-----------  118 (305)
Q Consensus        71 ~~dg~v~vwd~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~--~~-----------  118 (305)
                      . |+.|++|++.+++........                   .....+.|+|||+.++.......  ..           
T Consensus       130 ~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~  208 (740)
T 4a5s_A          130 W-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL  208 (740)
T ss_dssp             E-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred             E-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence            5 689999999887754422211                   12235899999998887642111  00           


Q ss_pred             ----------------e--eeEEEEEeecccCCCCCc--eEEEEe------ccCCCeeEEEEcCCCCEEEEeeC----CC
Q 021925          119 ----------------N--SAIHVKRIARDPADQGGE--SVLILK------GPQGRINRAVWGPLNRTIISAGE----DA  168 (305)
Q Consensus       119 ----------------~--~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~----dg  168 (305)
                                      .  ..+.++++....   .++  ....+.      ++...+..++|+|||+.++....    +.
T Consensus       209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~  285 (740)
T 4a5s_A          209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS---SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYS  285 (740)
T ss_dssp             SSCEEEEEECCBTTSCCCEEEEEEEETTSCC---SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE
T ss_pred             CCCcceeecCCCCcCcCCeeEEEEEECCCCC---CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEE
Confidence                            0  012222221100   011  222333      26677899999999996665432    34


Q ss_pred             cEEEEeCCCCc----Eeeeecc-ccCCccceE-----EEEEcCCCCEEE-EEeC-C--CeEEEEEcCCceEEEEEeeCCC
Q 021925          169 IVRIWDTETGK----LLKESDK-ETGHKKTIT-----SLAKAADGSHFL-TGSL-D--KSAKLWDARTLELIKTYVTERP  234 (305)
Q Consensus       169 ~i~iwd~~~~~----~~~~~~~-~~~~~~~v~-----~~~~~~~~~~l~-~~~~-d--g~i~iwd~~~~~~~~~~~~~~~  234 (305)
                      .|++||+.+++    +...... ...+...+.     ..+|+|||+.|+ ..+. +  ..|++||+.+++..........
T Consensus       286 ~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~  365 (740)
T 4a5s_A          286 VMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWE  365 (740)
T ss_dssp             EEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSC
T ss_pred             EEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEE
Confidence            79999999887    2221110 013444433     678999999877 6654 3  4688999887766544444445


Q ss_pred             eeEEEecCCCCcEEEeeC
Q 021925          235 VNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       235 v~~~~~~~~~~~l~~~~~  252 (305)
                      +..+.. ++++.|+..+.
T Consensus       366 v~~~~~-~d~~~i~f~~~  382 (740)
T 4a5s_A          366 VIGIEA-LTSDYLYYISN  382 (740)
T ss_dssp             EEEEEE-ECSSEEEEEES
T ss_pred             EEEEEE-EeCCEEEEEEe
Confidence            555432 44666555443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=1.3e-15  Score=118.47  Aligned_cols=228  Identities=7%  Similarity=-0.090  Sum_probs=151.1

Q ss_pred             ceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      ...+++++++|++++ +.+.++.|.+|+..++........+...+.+++++++++.+++.. ++.|.+||..+... ..+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence            678999999999777 547788999998765443222223335678999999998666655 88999999876543 333


Q ss_pred             e--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC
Q 021925           91 N--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (305)
Q Consensus        91 ~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  168 (305)
                      .  ....+..+++.+++.+.++...     ...+..++.      ...............+..++++|+++.+++...++
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~------~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~  171 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRG-----NNRVVKLAA------GSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNN  171 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGG-----GTEEEEECT------TCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGT
T ss_pred             ecCCcCCCcceEECCCCCEEEEECC-----CCEEEEEEC------CCceeEeeccccCCCceeEEEeCCCCEEEEECCCC
Confidence            2  2256789999999886665432     112222211      11111111122334678899999999777777788


Q ss_pred             cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcE
Q 021925          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHV  247 (305)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l  247 (305)
                      .|.+||...........   .+...+..++++++|.++++...++.|.+||........... ....+.+++++|+|+++
T Consensus       172 ~i~~~~~~~~~~~~~~~---~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          172 RVVKLEAESNNQVVLPF---TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             EEEEECTTTCCEEECCC---SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred             EEEEEecCCCceEeecc---cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence            99999988765543322   233678899999999777777778899999987654433222 23568999999999866


Q ss_pred             EEeeCCcE
Q 021925          248 CIGEPQTI  255 (305)
Q Consensus       248 ~~~~~~~~  255 (305)
                      ++...++.
T Consensus       249 v~~~~~~~  256 (270)
T 1rwi_B          249 VADRGNDR  256 (270)
T ss_dssp             EEEGGGTE
T ss_pred             EEECCCCE
Confidence            66665555

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.74  E-value=1.4e-14  Score=117.39  Aligned_cols=229  Identities=10%  Similarity=0.018  Sum_probs=145.9

Q ss_pred             CCCEEEEee------CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC----------CCcEEEEecCCC
Q 021925           21 DGDLLFSCA------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA----------DQTAKLWNVETG   84 (305)
Q Consensus        21 ~~~~l~s~~------~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~----------dg~v~vwd~~~~   84 (305)
                      ++++++...      .|+.|.+||..+++.+.++..+..+  .++|+||++++++++.          ++.|.+||..+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            566666653      3679999999999998888876655  8999999999988863          677999999999


Q ss_pred             CeeEEEeeC-------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE-Ee-------------
Q 021925           85 AQLFTFNFD-------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LK-------------  143 (305)
Q Consensus        85 ~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------  143 (305)
                      +.+..+...       .....++++|++++++++...   ....+.++++...      +.+.. +.             
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~---~~~~v~v~d~~~~------~~~~~~i~~~~~~~v~~~p~~  162 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS---PATSIGIVDVAKG------DYVEDVTAAAGCWSVIPQPNR  162 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES---SSEEEEEEETTTT------EEEEEEGGGTTEEEEEECTTS
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC---CCCeEEEEECCCC------cEEEEEecCCCcceeEEcCCC
Confidence            998888743       467889999999999887421   0122333332211      11111 00             


Q ss_pred             -------ccCCCeeEEE---------------------------EcCCCCEEEEeeCCCcEEEEeCCCCcE--eeeeccc
Q 021925          144 -------GPQGRINRAV---------------------------WGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKE  187 (305)
Q Consensus       144 -------~~~~~i~~~~---------------------------~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~  187 (305)
                             ...+.+..+.                           .+|++..++..+.++.|.++|+.....  ...+...
T Consensus       163 ~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~  242 (361)
T 2oiz_A          163 PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLL  242 (361)
T ss_dssp             SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESC
T ss_pred             CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccccc
Confidence                   0011111111                           123333444444556666777654321  1111100


Q ss_pred             c---CC----ccceEEEEEcCCCCEEEEEeC-----------CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEE
Q 021925          188 T---GH----KKTITSLAKAADGSHFLTGSL-----------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCI  249 (305)
Q Consensus       188 ~---~~----~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  249 (305)
                      .   ..    ......++++|+++.++++..           .+.|.+||+.+++.+.++..+. +.+++|+|+|++|++
T Consensus       243 ~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v  321 (361)
T 2oiz_A          243 NDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLT  321 (361)
T ss_dssp             CHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEE
T ss_pred             CccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEE
Confidence            0   00    011112688999888776643           3589999999999999998666 999999999999998


Q ss_pred             eeCCcEEEEEEeehhhhh
Q 021925          250 GEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~  267 (305)
                      ++. +.     +.+|+..
T Consensus       322 ~n~-~~-----v~v~D~~  333 (361)
T 2oiz_A          322 LDG-GN-----VNVYDIS  333 (361)
T ss_dssp             ECS-SC-----EEEEECS
T ss_pred             eCC-Ce-----EEEEECC
Confidence            876 44     4555443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=4.3e-16  Score=137.10  Aligned_cols=230  Identities=13%  Similarity=-0.029  Sum_probs=153.4

Q ss_pred             ccccceEEEEEcCCCCEEE-----EeeCCCceEEEEcCCCeeeEEecCCCcce--EEEEEcCCCcEEEEEeCCCc-----
Q 021925            8 GHERPLTYLKYNKDGDLLF-----SCAKDHTPTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTLITGSADQT-----   75 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~-----s~~~dg~v~iw~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~s~~~dg~-----   75 (305)
                      +|...+..++|||||++||     .|+.+..|++||+.+++.+.  ..+...+  ..++|+|||+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            4666799999999999998     34445789999999988651  1111222  67899999999999988776     


Q ss_pred             --------EEEEecCCCCe--eEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925           76 --------AKLWNVETGAQ--LFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (305)
Q Consensus        76 --------v~vwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (305)
                              |++|++.+++.  ...+.   ....+..+.++|+++.++.......   ....++.+..    .. .....+
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~---~~~~l~~~~~----~~-~~~~~l  267 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW---SENDVYWKRP----GE-KDFRLL  267 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT---TEEEEEEECT----TC-SSCEEE
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC---CceEEEEEcC----CC-CceEEe
Confidence                    99999988763  23333   2346789999999998887653221   1223333311    11 234445


Q ss_pred             eccCCCeeEEEEcCCCCEEEEee---CCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925          143 KGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (305)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  217 (305)
                      ..+...+....+ +++++++...   .++.|.+||+.+++.  ...+... .....+..++++ ++.++++...|+..++
T Consensus       268 ~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          268 VKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE-DSSASLLSVSIV-GGHLSLEYLKDATSEV  344 (695)
T ss_dssp             EECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC-CSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred             ecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC-CCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence            556666666666 5566444443   258899999987653  1222210 124567888888 6778889999999888


Q ss_pred             EEcC-CceEEEEEe-e-CCCeeEEEecCCCCcEEEe
Q 021925          218 WDAR-TLELIKTYV-T-ERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       218 wd~~-~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~  250 (305)
                      |.+. +++....+. + ...+..++++|+++.++..
T Consensus       345 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~  380 (695)
T 2bkl_A          345 RVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYV  380 (695)
T ss_dssp             EEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEE
T ss_pred             EEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEE
Confidence            8665 455555554 2 4567888999999877644

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.72  E-value=9.1e-14  Score=109.57  Aligned_cols=238  Identities=10%  Similarity=0.011  Sum_probs=160.2

Q ss_pred             ecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      +..+..--.+..|+|+ +.++++...++.|..||..+++. ..+. ....+.+++++++|+++++ . ++.|.+||.+++
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g   83 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ   83 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence            3445556678999995 45666666789999999887765 3333 4567999999999985554 4 567999999877


Q ss_pred             CeeEEEeeC-----CCceEEEEecCCceEEEeCCccee----eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925           85 AQLFTFNFD-----SPARSVDFAVGDKLAVITTDPFME----LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (305)
Q Consensus        85 ~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (305)
                      +........     ..+..+++.|++++.+........    ......++.+...     ++ ...+.......+.++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-----g~-~~~~~~~~~~pngi~~s  157 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-----HH-VKKYFDQVDISNGLDWS  157 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-----SC-EEEEEEEESBEEEEEEC
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-----CC-EEEEeeccccccceEEc
Confidence            654333321     236778999999876654321100    0112233433221     12 22233344556889999


Q ss_pred             CCCCEEE-EeeCCCcEEEEeC--CCCcEe--eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          156 PLNRTII-SAGEDAIVRIWDT--ETGKLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       156 ~~~~~l~-~~~~dg~i~iwd~--~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      |+++.|+ +.+.++.|.+||+  .++...  +.+.....+...+..++++++|++.++....+.|..||..+++.+..+.
T Consensus       158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~  237 (297)
T 3g4e_A          158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK  237 (297)
T ss_dssp             TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred             CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence            9998765 4455789999997  455432  1222111234567889999999888887778899999999999988888


Q ss_pred             eC-CCeeEEEec-CCCCcEEEeeCC
Q 021925          231 TE-RPVNAVTMS-PLLDHVCIGEPQ  253 (305)
Q Consensus       231 ~~-~~v~~~~~~-~~~~~l~~~~~~  253 (305)
                      .. ..+++++|. |+++.|.+++..
T Consensus       238 ~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          238 LPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             CSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             CCCCCceEEEEeCCCCCEEEEEcCC
Confidence            44 679999998 898887776543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.72  E-value=5.6e-15  Score=118.44  Aligned_cols=232  Identities=10%  Similarity=0.004  Sum_probs=157.9

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~   89 (305)
                      ...|.+++|++++..++..+.++.++.|   .++....+..+...+.+++|+|++++++++..++.|.+||.++++....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~   81 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP   81 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred             ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence            3457889999998888887889999999   3566677777777889999999999878888899999999988876554


Q ss_pred             E-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe--ccCCCeeEEEEcCCCCEEEEeeC
Q 021925           90 F-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWGPLNRTIISAGE  166 (305)
Q Consensus        90 ~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~  166 (305)
                      . .....+.+++++++++++++...... ....+..++..      .......+.  .+...+..++++|+++.+++...
T Consensus        82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~-~~~~i~~~d~~------~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  154 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGRLFVCYLGDFK-STGGIFAATEN------GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR  154 (333)
T ss_dssp             EECSSSSEEEEEECTTSCEEEEECTTSS-SCCEEEEECTT------SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred             eeCCCCCcceEEECCCCcEEEEeCCCCC-CCceEEEEeCC------CCEEEEEEccCccCCcccceEECCCCCEEEEecc
Confidence            4 35677899999999987777654200 00122222211      111111221  23456889999999987776653


Q ss_pred             ------CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEE-EEeCCCeEEEEEcCC-ceEEEEE------e--
Q 021925          167 ------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDART-LELIKTY------V--  230 (305)
Q Consensus       167 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~------~--  230 (305)
                            .+.|..+|..+++......    ....+..++|+|+++.|+ +.+.++.|++||+.+ ++.+..+      .  
T Consensus       155 ~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  230 (333)
T 2dg1_A          155 GYSTNPLGGVYYVSPDFRTVTPIIQ----NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT  230 (333)
T ss_dssp             CBTTBCCEEEEEECTTSCCEEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred             ccccCCCceEEEEeCCCCEEEEeec----CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC
Confidence                  3567777766554433222    334578899999998664 445688999999863 3322211      1  


Q ss_pred             eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          231 TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       231 ~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ....+..++++++|++.++...++.
T Consensus       231 ~~~~~~~i~~d~~G~l~v~~~~~~~  255 (333)
T 2dg1_A          231 GHEGPDSCCIDSDDNLYVAMYGQGR  255 (333)
T ss_dssp             SSSEEEEEEEBTTCCEEEEEETTTE
T ss_pred             CCCCCCceEECCCCCEEEEEcCCCE
Confidence            1135788999999987776655554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.71  E-value=3.1e-14  Score=113.83  Aligned_cols=222  Identities=10%  Similarity=-0.062  Sum_probs=154.7

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   91 (305)
                      ....+.+. +++..++...++.|.+||..+++.+.++. .......++++++++.+++...++.|.+||.++++....+.
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            45677774 34555566667999999999999988886 34668999999988544544478999999999998888887


Q ss_pred             eCC------CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           92 FDS------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        92 ~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      ...      ....+++ .++.+.++...    ....+.+.+..      ..+....+.. ......++++|+|++++++.
T Consensus       123 ~g~~~~~~~~p~~i~~-~~~~lyv~~~~----~~~~v~viD~~------t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~  190 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQ-YGKYVYVNCWS----YQNRILKIDTE------TDKVVDELTI-GIQPTSLVMDKYNKMWTITD  190 (328)
T ss_dssp             CTTCCTTTCBCCCEEE-ETTEEEEEECT----TCCEEEEEETT------TTEEEEEEEC-SSCBCCCEECTTSEEEEEBC
T ss_pred             cCCccccCCCcceEEE-ECCEEEEEcCC----CCCEEEEEECC------CCeEEEEEEc-CCCccceEEcCCCCEEEEEC
Confidence            655      6777887 45555444321    12233333322      2233333332 23456789999998777766


Q ss_pred             CC----------CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE--Eee-C
Q 021925          166 ED----------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT--YVT-E  232 (305)
Q Consensus       166 ~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-~  232 (305)
                      .+          +.|.++|..+++....+...  .......++++|+++.|+++..  .|.+||..+++....  +.. .
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~--~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~  266 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK--LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRD  266 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECC--TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCS
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecC--CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCC
Confidence            54          78999999998877766421  1246889999999998888765  899999988876421  111 4


Q ss_pred             CCeeEEEecCCCCcEEEee
Q 021925          233 RPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       233 ~~v~~~~~~~~~~~l~~~~  251 (305)
                      .....++++|++..|.++.
T Consensus       267 ~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          267 TKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             SCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEcCCCCeEEEEc
Confidence            5688999999666666665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.71  E-value=5.6e-14  Score=111.60  Aligned_cols=240  Identities=10%  Similarity=0.037  Sum_probs=158.3

Q ss_pred             ecccccceEEEEEcCCCCEEEE-------eeCCCceEEEEcCCCeeeEEec----CCCcceEEEEEcCC-CcEEEEEeCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFS-------CAKDHTPTVWFADNGERLGTYR----GHNGAVWCCDVSRD-SMTLITGSAD   73 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s-------~~~dg~v~iw~~~~~~~~~~~~----~~~~~v~~i~~~~~-~~~l~s~~~d   73 (305)
                      +.+.-....+++|+++|+.+++       +..++.|.+||..+++......    ++...+.+++++++ ++++++.. .
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~   91 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-R   91 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-T
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-C
Confidence            3444556789999999988887       6778999999987777543222    24467899999999 76555444 4


Q ss_pred             CcEEEEecCCCCeeEE-Ee-----eCCCceEEEEecCCceEEEeCCcce--------eeeeeEEEEEeecccCCCCCceE
Q 021925           74 QTAKLWNVETGAQLFT-FN-----FDSPARSVDFAVGDKLAVITTDPFM--------ELNSAIHVKRIARDPADQGGESV  139 (305)
Q Consensus        74 g~v~vwd~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  139 (305)
                      +.|.+||.+ ++.... ..     ....+.++++.+++.+.++......        .......++.+..     .++. 
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~g~~-  164 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-----DGQM-  164 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----TSCE-
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECC-----CCCE-
Confidence            479999988 654432 22     1234789999999987776643210        0000122333321     1122 


Q ss_pred             EEEeccCCCeeEEEEc----CCCCEEEEe-eCCCcEEEEeCC-CCcEe--eeeccccCCc-cceEEEEEcCCCCEEEEEe
Q 021925          140 LILKGPQGRINRAVWG----PLNRTIISA-GEDAIVRIWDTE-TGKLL--KESDKETGHK-KTITSLAKAADGSHFLTGS  210 (305)
Q Consensus       140 ~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~iwd~~-~~~~~--~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~  210 (305)
                      ..+..+......++++    |+++.++.+ ..++.|.+||+. +++..  ..+.....+. ..+..++++++|+++++..
T Consensus       165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~  244 (314)
T 1pjx_A          165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence            2223334456889999    999766555 567899999986 44321  1111111333 5678899999999888887


Q ss_pred             CCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCC
Q 021925          211 LDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       211 ~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~  253 (305)
                      .++.|.+||.++++.+..+. +...+.+++++|+++.|.+++..
T Consensus       245 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence            88999999998787766666 44678999999999967666544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=2.1e-14  Score=112.52  Aligned_cols=200  Identities=12%  Similarity=0.138  Sum_probs=142.1

Q ss_pred             ccccceEEEEE-cCCCCEEEEeeC-CCceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            8 GHERPLTYLKY-NKDGDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         8 ~h~~~v~~~~~-~~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      +|...+.++++ .++++++++... ++.|++|| .+++.+..+.. +...+.+++++|+++.+++...++.|.+||.. +
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g  151 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-G  151 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-C
Confidence            34567899999 577776666543 88999999 56777766643 44578999999999888887788999999964 5


Q ss_pred             CeeEEEee---CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc--CCCeeEEEEcCCCC
Q 021925           85 AQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--QGRINRAVWGPLNR  159 (305)
Q Consensus        85 ~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~  159 (305)
                      +.+..+..   ...+..+++++++.++++...     ...+..++.       .++.+..+..+  ...+..++++|+++
T Consensus       152 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~-------~g~~~~~~~~~g~~~~p~~i~~d~~G~  219 (286)
T 1q7f_A          152 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-----AHCVKVFNY-------EGQYLRQIGGEGITNYPIGVGINSNGE  219 (286)
T ss_dssp             CEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-----GTEEEEEET-------TCCEEEEESCTTTSCSEEEEEECTTCC
T ss_pred             CEEEEeCCCCccCCcEEEEECCCCCEEEEECC-----CCEEEEEcC-------CCCEEEEEccCCccCCCcEEEECCCCC
Confidence            66666542   245789999999987666543     223333332       12333334322  35788999999999


Q ss_pred             EEEEeeCCC-cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925          160 TIISAGEDA-IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       160 ~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  224 (305)
                      ++++...++ .|.+||. +++.+..+... .....+.+++++|+|+++++ +.|++|++|+.....
T Consensus       220 l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          220 ILIADNHNNFNLTIFTQ-DGQLISALESK-VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEEEECSSSCEEEEECT-TSCEEEEEEES-SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             EEEEeCCCCEEEEEECC-CCCEEEEEccc-CCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            888887775 9999995 46666666421 12334789999999987666 679999999986543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=9.3e-15  Score=116.97  Aligned_cols=202  Identities=12%  Similarity=0.101  Sum_probs=145.6

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-eeEEe---------cCCCcceEEEEEcC-CCcEEEEEe-CCCcE
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTY---------RGHNGAVWCCDVSR-DSMTLITGS-ADQTA   76 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-~~~~~---------~~~~~~v~~i~~~~-~~~~l~s~~-~dg~v   76 (305)
                      +......++++|+|+++++...++.|++|+..... .+..+         .++-.....++++| ++..+++.+ .++.|
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            44578899999999988888889999999975432 45555         23445789999999 788888876 68999


Q ss_pred             EEEecCCCCeeEEEeeC-----------CCceEEEEecC-CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-
Q 021925           77 KLWNVETGAQLFTFNFD-----------SPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-  143 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~-----------~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  143 (305)
                      ++|| .+++.+..+...           ..+..++++|+ +.++++...     ...+..++..      .++.+..+. 
T Consensus       169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-----~~~I~~~~~~------~G~~~~~~~~  236 (329)
T 3fvz_A          169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-----NGRIQCFKTD------TKEFVREIKH  236 (329)
T ss_dssp             EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-----TTEEEEEETT------TCCEEEEECC
T ss_pred             EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-----CCEEEEEECC------CCcEEEEEec
Confidence            9999 567777766422           23789999998 565555543     2233343332      234444442 


Q ss_pred             -ccCCCeeEEEEcC------CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925          144 -GPQGRINRAVWGP------LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (305)
Q Consensus       144 -~~~~~i~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  216 (305)
                       .+...+..++++|      +++..++...+..|++||..+++.+..+.....+...+..++++|+|.++++...+++|+
T Consensus       237 ~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          237 ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence             3456788899999      333333334456899999999998888753335667799999999998888888899999


Q ss_pred             EEEcCC
Q 021925          217 LWDART  222 (305)
Q Consensus       217 iwd~~~  222 (305)
                      +|++..
T Consensus       317 ~~~~~~  322 (329)
T 3fvz_A          317 KFTLTE  322 (329)
T ss_dssp             EEEEEE
T ss_pred             EEeCCc
Confidence            999763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=9.4e-15  Score=117.79  Aligned_cols=218  Identities=13%  Similarity=0.078  Sum_probs=142.3

Q ss_pred             cceEEEEEcCCCCEEEEee---------CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---C--cE
Q 021925           11 RPLTYLKYNKDGDLLFSCA---------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---Q--TA   76 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~---------~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g--~v   76 (305)
                      ..+...++  ||+.++...         .++.|.+||+.+++.. .+    ..+..++|+|||++|+.++.+   +  .|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            45778888  898887652         2568999999887653 33    568899999999999887754   2  38


Q ss_pred             EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcce----------------------eeeeeEEEEEeecccCCC
Q 021925           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM----------------------ELNSAIHVKRIARDPADQ  134 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~  134 (305)
                      .+||+.+++.......+. +..+.|+|+++.++.......                      .....+..+++      .
T Consensus        88 ~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~------~  160 (347)
T 2gop_A           88 WVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT------E  160 (347)
T ss_dssp             EEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET------T
T ss_pred             EEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC------C
Confidence            888988887766666555 899999999998877652100                      00112222222      1


Q ss_pred             CCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC-------cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEE
Q 021925          135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDA-------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL  207 (305)
Q Consensus       135 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  207 (305)
                      .++.+..+.. . .+..+.|+|++ .++++..++       ...+|.+.+++ ...+.   .+ ..+..+  +|+|+.|+
T Consensus       161 ~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~---~~-~~~~~~--spdg~~l~  230 (347)
T 2gop_A          161 SEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMF---EK-VSFYAV--DSDGERIL  230 (347)
T ss_dssp             TTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEE---EE-ESEEEE--EECSSCEE
T ss_pred             CCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEec---cC-cceeeE--CCCCCEEE
Confidence            2233233444 3 78899999999 777776542       33444443444 33443   23 445444  99999988


Q ss_pred             EEeCC--------CeEEEEEcCCceEEEEEe-eCCCeeE-EEecCCCCcEEEeeCCcEE
Q 021925          208 TGSLD--------KSAKLWDARTLELIKTYV-TERPVNA-VTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       208 ~~~~d--------g~i~iwd~~~~~~~~~~~-~~~~v~~-~~~~~~~~~l~~~~~~~~~  256 (305)
                      .++.+        ..|++||  +++...... +...+.. +.|+ ++ ++++++.++..
T Consensus       231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~  285 (347)
T 2gop_A          231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV  285 (347)
T ss_dssp             EEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred             EEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence            77754        4688888  555443333 4556776 8999 88 77777777653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.69  E-value=2.1e-13  Score=107.92  Aligned_cols=239  Identities=9%  Similarity=0.044  Sum_probs=156.7

Q ss_pred             eEecccccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      ..+..+........|+|+|+ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.+
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            34555666778999999998 5667777899999987 454 34555566778999999999876666566889999986


Q ss_pred             CCCeeEEEe-----eCCCceEEEEecCCceEEEeCCccee----------eeeeEEEEEeecccCCCCCceEEEEeccCC
Q 021925           83 TGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFME----------LNSAIHVKRIARDPADQGGESVLILKGPQG  147 (305)
Q Consensus        83 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (305)
                       ++......     ....+..+++.+++.+.++...-...          ......++.+..    ..++... +. ...
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~----~~g~~~~-~~-~~~  188 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP----DGSPLQR-MA-DLD  188 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS----SSCCCEE-EE-EES
T ss_pred             -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC----CCCcEEE-Ee-cCC
Confidence             54332222     12346789999999877752110000          001122333321    1112222 22 345


Q ss_pred             CeeEEEEcCCCCEEEEeeCC------CcEEEEeCCCCcEeeeecc-ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          148 RINRAVWGPLNRTIISAGED------AIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      ....++|+|+++.|+.+...      +.|.+||+..+. +..... ..........++++++|++ .+++.+ .|.+|+.
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~  265 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS  265 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC
Confidence            66789999999988777665      789999987654 211110 0012334567889999984 444444 4999997


Q ss_pred             CCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          221 RTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       221 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                       +++.+..+.....+.+++|+|+++.|.+++.++.
T Consensus       266 -~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          266 -DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             -TSCEEEEEECSSCCCEEEECTTSCEEEEEETTEE
T ss_pred             -CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeE
Confidence             5777777775557899999999999988887654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.68  E-value=2.6e-15  Score=120.98  Aligned_cols=169  Identities=12%  Similarity=0.007  Sum_probs=128.1

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-----------eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-----------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      +++.+++++...++++|+.+ .+++|++++.+           ..... .+.. |..++|  |++.|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            68999999999999999988 55669865433           11223 3666 999999  88899988 889999999


Q ss_pred             cCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                      +++........                                                    .+...+.++.+.+.  .
T Consensus       113 v~sl~~~~~~~----------------------------------------------------~~~~~v~~i~~~~p--~  138 (388)
T 1xip_A          113 LEELSEFRTVT----------------------------------------------------SFEKPVFQLKNVNN--T  138 (388)
T ss_dssp             SSSTTCEEEEE----------------------------------------------------ECSSCEEEEEECSS--E
T ss_pred             chhhhccCccc----------------------------------------------------eeecceeeEEecCC--C
Confidence            98765332221                                                    12223344444433  2


Q ss_pred             EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE--EEEE------e--
Q 021925          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTY------V--  230 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~------~--  230 (305)
                      +++++.||.|.+||+.+++...       +...|++++|+|+|  ++.|..||++++|+...++.  .+++      .  
T Consensus       139 ~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~  209 (388)
T 1xip_A          139 LVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEEL  209 (388)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTS
T ss_pred             EEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccc
Confidence            8888999999999999877642       34689999999999  78899999999999887775  5555      1  


Q ss_pred             --eCCCeeEEEecCCCCcEEE
Q 021925          231 --TERPVNAVTMSPLLDHVCI  249 (305)
Q Consensus       231 --~~~~v~~~~~~~~~~~l~~  249 (305)
                        +...|.++.|.+++.++++
T Consensus       210 ~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          210 PVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             CTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCCeeEEEEEEecCCeEEEE
Confidence              4567999999999998886

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.68  E-value=6.7e-13  Score=104.47  Aligned_cols=232  Identities=11%  Similarity=0.072  Sum_probs=159.2

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEE-ecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      +.+..+...+.+++++++|+..++...++.|.+||.. ++.... ...+...+.++++.+++..+++...++.|..||..
T Consensus         8 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A            8 LNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             EECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            3455667789999999999988876668899999987 554322 22345679999999999888877778899999976


Q ss_pred             CCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE-EEeccCCCeeEEEEcCCC
Q 021925           83 TGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        83 ~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~  158 (305)
                       ++ ...+.   ....+..+++.+++.+.++....     ..+..++.       .++... ........+..+++++++
T Consensus        87 -g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d~-------~g~~~~~~~~~~~~~~~~i~~~~~g  152 (299)
T 2z2n_A           87 -GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNG-----NRIGRITD-------DGKIREYELPNKGSYPSFITLGSDN  152 (299)
T ss_dssp             -SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEECT-------TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred             -Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCC-----ceEEEECC-------CCCEEEecCCCCCCCCceEEEcCCC
Confidence             33 33333   23467889999988877765431     11111111       111111 112234568899999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCe
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPV  235 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v  235 (305)
                      +..++...++.|..||. +++......  ......+..++++++|+++++...++.|.+||. +++... +.   ....+
T Consensus       153 ~l~v~~~~~~~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~  227 (299)
T 2z2n_A          153 ALWFTENQNNAIGRITE-SGDITEFKI--PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARP  227 (299)
T ss_dssp             CEEEEETTTTEEEEECT-TCCEEEEEC--SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCE
T ss_pred             CEEEEeCCCCEEEEEcC-CCcEEEeeC--CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCc
Confidence            87777777789999998 665543211  123456889999999987777767889999998 665433 32   33568


Q ss_pred             eEEEecCCCCcEEEeeCCcE
Q 021925          236 NAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~  255 (305)
                      .+++++++|++.++...++.
T Consensus       228 ~~i~~~~~g~l~v~~~~~~~  247 (299)
T 2z2n_A          228 HAITAGAGIDLWFTEWGANK  247 (299)
T ss_dssp             EEEEECSTTCEEEEETTTTE
T ss_pred             eeEEECCCCCEEEeccCCce
Confidence            89999999986655544444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=4.6e-13  Score=114.05  Aligned_cols=230  Identities=11%  Similarity=0.059  Sum_probs=156.7

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcC--CCeeeEEecCCCcceEEEEEc----CCCcEEEEEeC-CCcEEEEecCC
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVS----RDSMTLITGSA-DQTAKLWNVET   83 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~i~~~----~~~~~l~s~~~-dg~v~vwd~~~   83 (305)
                      ..+..+.++|||+++++++.|+.|.+||+.  +++.+.++.... ....++|+    |||+++++++. +++|.++|..+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            356789999999999999999999999995  788888887543 46899999    69998887766 69999999999


Q ss_pred             CCeeEEEeeC------------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925           84 GAQLFTFNFD------------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (305)
Q Consensus        84 ~~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (305)
                      .+.+..+...            ..+..+..++++..+++....    .+.+.+.+....    ....+..+ ........
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~----~g~v~~vd~~~~----~~~~v~~i-~~~~~~~d  346 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE----TGKILLVDYTDL----NNLKTTEI-SAERFLHD  346 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEETTCS----SEEEEEEE-ECCSSEEE
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC----CCeEEEEecCCC----ccceeeee-eccccccC
Confidence            9998887632            145566666665544443211    111111111100    00011111 22334667


Q ss_pred             EEEcCCCCEEEEee-CCCcEEEEeCCCCcEeeeecc-c-cCCccceEEEEEcCCCCE-EEEEe-CCCeEEEEEcCC----
Q 021925          152 AVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDK-E-TGHKKTITSLAKAADGSH-FLTGS-LDKSAKLWDART----  222 (305)
Q Consensus       152 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~-l~~~~-~dg~i~iwd~~~----  222 (305)
                      +.|+|+++++++++ .++.|.++|+.+++.+..+.. . ..|.+.-..+ ++|++.. .+++. .++.|.++|..+    
T Consensus       347 ~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~  425 (567)
T 1qks_A          347 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP  425 (567)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred             ceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence            89999999987766 578999999999988777653 1 1243222222 5787444 44543 468999999987    


Q ss_pred             ---ceEEEEEeeC-CCeeEEEecCCCCcEEEee
Q 021925          223 ---LELIKTYVTE-RPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       223 ---~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~  251 (305)
                         .+.++++... ..-..+..+|+++++.+..
T Consensus       426 ~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          426 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             TTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             cccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence               6778887743 3335578999999999876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.68  E-value=1.2e-13  Score=110.32  Aligned_cols=221  Identities=9%  Similarity=-0.026  Sum_probs=153.0

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCC-----cceEEEEEcCCCcEEEEEe-CCCcEEEEecCC
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-----GAVWCCDVSRDSMTLITGS-ADQTAKLWNVET   83 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~l~s~~-~dg~v~vwd~~~   83 (305)
                      ......++++++++..++...++.|.+||..+++....+....     .....+++ .+++.+++.. .++.|.++|.++
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t  161 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET  161 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC
Confidence            4568899999998555554478999999999999887776433     14567777 4444444443 488999999999


Q ss_pred             CCeeEEEeeCCCceEEEEecCCceEEEeCCcceee-----eeeEEEEEeecccCCCCCceEEEEecc-CCCeeEEEEcCC
Q 021925           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-----NSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPL  157 (305)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~  157 (305)
                      ++.+..+........+.+++++++.+++.......     ...+...+.      ...+....+... ......++++|+
T Consensus       162 ~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~------~t~~v~~~~~~~~g~~p~~la~~~d  235 (328)
T 3dsm_A          162 DKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA------ETFTVEKQFKFKLGDWPSEVQLNGT  235 (328)
T ss_dssp             TEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET------TTTEEEEEEECCTTCCCEEEEECTT
T ss_pred             CeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEEC------CCCeEEEEEecCCCCCceeEEEecC
Confidence            99988888777788999999999777665421100     022333322      122333333322 236889999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEE----eCCCeEEEEEcCCceEEEEEeeC
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTG----SLDKSAKLWDARTLELIKTYVTE  232 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~  232 (305)
                      ++.++++..  .|.+||..+++...... ..........++++| ++.++++.    ..++.|.+||.. ++.+.++..+
T Consensus       236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~-~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G  311 (328)
T 3dsm_A          236 RDTLYWINN--DIWRMPVEADRVPVRPF-LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG  311 (328)
T ss_dssp             SCEEEEESS--SEEEEETTCSSCCSSCS-BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE
T ss_pred             CCEEEEEcc--EEEEEECCCCceeeeee-ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec
Confidence            998888765  89999998877542111 111246788999999 55555565    578999999998 9999988866


Q ss_pred             CCeeEEEec
Q 021925          233 RPVNAVTMS  241 (305)
Q Consensus       233 ~~v~~~~~~  241 (305)
                      .....++|-
T Consensus       312 ~~P~~~~~~  320 (328)
T 3dsm_A          312 IIPGAFCWK  320 (328)
T ss_dssp             ESEEEEEEE
T ss_pred             cCcceEEEe
Confidence            666777664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.66  E-value=3.8e-14  Score=125.62  Aligned_cols=233  Identities=12%  Similarity=0.023  Sum_probs=151.2

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCC-----CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCc-------
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT-------   75 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~-------   75 (305)
                      +|...+..++|||||++||.++.+     ..|++||+.+++.+.... +...+..++|+|| +.|+.++.++.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            344478899999999999887653     359999999998754321 2222357899999 98888877654       


Q ss_pred             -------EEEEecCCCCe--eEEEeeC---CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe
Q 021925           76 -------AKLWNVETGAQ--LFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (305)
Q Consensus        76 -------v~vwd~~~~~~--~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (305)
                             |.+|++.+++.  ...+...   ..+..+.|+|+++.++............+.++++....    .+....+.
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~~~~l~  313 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK----IGPVTALI  313 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE----ECCCEEEE
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC----CcccEEec
Confidence                   88999987763  2333322   24778999999998877654221123344455543210    01134445


Q ss_pred             ccCCCeeEEEEcCCCCEEEEeeC----CCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925          144 GPQGRINRAVWGPLNRTIISAGE----DAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW  218 (305)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  218 (305)
                      .+....... ++|+++.|+..+.    ++.|.+||+.++. ....+..  .+...+..++++ ++.++++...|+..++|
T Consensus       314 ~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~--~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  389 (741)
T 1yr2_A          314 PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP--ESKDNLESVGIA-GNRLFASYIHDAKSQVL  389 (741)
T ss_dssp             CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC--CCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred             CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec--CCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence            555555544 3488988887765    3459999998742 3233321  344457777887 56678888889987777


Q ss_pred             EcC-CceEEEEEe--eCCCeeEEEecCCCCcEEEe
Q 021925          219 DAR-TLELIKTYV--TERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       219 d~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~  250 (305)
                      .+. +++....+.  ....+..++++|+++.++..
T Consensus       390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~  424 (741)
T 1yr2_A          390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS  424 (741)
T ss_dssp             EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred             EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence            654 455556555  34568889999999876644

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.65  E-value=1.5e-12  Score=103.94  Aligned_cols=230  Identities=13%  Similarity=0.034  Sum_probs=151.1

Q ss_pred             ceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           12 PLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        12 ~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      -..+..|+|++ ..+++...++.|..||..+++.. .+. ....+.+++|+|+|+++++. .+ .|.+||.++++.....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            45688999974 45666667889999998877643 333 35679999999999877654 44 4999999888754333


Q ss_pred             eeC-----CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe-
Q 021925           91 NFD-----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-  164 (305)
Q Consensus        91 ~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  164 (305)
                      ...     ..+..+.++|++++.+...... .......++.+. .     ++ ...+.........++|+|+++.++.+ 
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-~~~~~~~l~~~~-~-----g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~  197 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRK-AETGAGSIYHVA-K-----GK-VTKLFADISIPNSICFSPDGTTGYFVD  197 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETT-CCTTCEEEEEEE-T-----TE-EEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCc-CCCCceEEEEEe-C-----Cc-EEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence            221     2467889999998766543110 000112333332 1     11 22222333456789999999877555 


Q ss_pred             eCCCcEEEEeCC--CC-cEe--eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925          165 GEDAIVRIWDTE--TG-KLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (305)
Q Consensus       165 ~~dg~i~iwd~~--~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  238 (305)
                      +.++.|.+||+.  ++ +..  ..+.........+..++++++|++.++...++.|..||. +++.+..+. ....+.++
T Consensus       198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~  276 (326)
T 2ghs_A          198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP  276 (326)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred             CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence            457899999986  55 311  112111123455678999999987777767789999998 577777776 34468999


Q ss_pred             Eec-CCCCcEEEeeCCc
Q 021925          239 TMS-PLLDHVCIGEPQT  254 (305)
Q Consensus       239 ~~~-~~~~~l~~~~~~~  254 (305)
                      +|+ |+++.|++++..+
T Consensus       277 af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          277 AFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EEESTTSCEEEEEEBCT
T ss_pred             EEecCCCCEEEEEecCC
Confidence            998 8988777665443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.64  E-value=1.2e-12  Score=107.58  Aligned_cols=229  Identities=9%  Similarity=-0.008  Sum_probs=149.3

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC--cEEEEecCCCCeeE
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLF   88 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~   88 (305)
                      .....++|+++|+++++...++.|++||..+++.......... .. ++|+|+++.|+++..++  .|.+++..++....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            4678999999999777777789999999988776655554333 34 99999999998888766  78899887666544


Q ss_pred             EE----e-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-----eccCCCe-e-EEEEcC
Q 021925           89 TF----N-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-----KGPQGRI-N-RAVWGP  156 (305)
Q Consensus        89 ~~----~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i-~-~~~~~~  156 (305)
                      .+    . ....+.+++++|++..++++..     ...+..++...      .. ...+     .++...- . .++++|
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-----~~~I~~~d~~~------~~-~~~~~~~~~~g~~~~~P~~~ia~~p  276 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDS-----NKNFGRFNVKT------QE-VTLIKQLELSGSLGTNPGPYLIYYF  276 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECT-----TCEEEEEETTT------CC-EEEEEECCCCSCCCCSSCCEEEEET
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEEC-----CCcEEEEECCC------CC-EEEEecccccCCCCCCccccEEEeC
Confidence            44    2 4456788999995444444432     12222222211      11 1111     1122222 3 899999


Q ss_pred             C-CCEEEEeeCCCcEEEEeCCCCcEeeeecccc------------CCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCC
Q 021925          157 L-NRTIISAGEDAIVRIWDTETGKLLKESDKET------------GHKKTITSLAKAADGSHFLTGS-LDKSAKLWDART  222 (305)
Q Consensus       157 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  222 (305)
                      + +.++++-..++.|+.||....  +..+....            ..-.....++++|+|+++++-+ .+++|+.||+.+
T Consensus       277 ~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~  354 (409)
T 3hrp_A          277 VDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD  354 (409)
T ss_dssp             TTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred             CCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence            6 555555566889999997643  22221100            0123578999999999777877 889999999887


Q ss_pred             ceEEEEEee---------------CCCeeEEEecCCCCcEEEeeCCcE
Q 021925          223 LELIKTYVT---------------ERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       223 ~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ++.......               -.....++++|++.++++-..++.
T Consensus       355 G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~  402 (409)
T 3hrp_A          355 GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA  402 (409)
T ss_dssp             TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred             CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence            765433322               134789999999765555544443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.64  E-value=1.7e-12  Score=110.60  Aligned_cols=230  Identities=12%  Similarity=0.055  Sum_probs=159.4

Q ss_pred             CCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC--CCCeeEEEeeCCCce
Q 021925           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE--TGAQLFTFNFDSPAR   97 (305)
Q Consensus        20 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~v~   97 (305)
                      |.+..+++...++.|.++|..+++.+.++.. ...+..+.|+|||+++++++.|+.|.+||+.  +++.+..+.......
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~  243 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR  243 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence            4445667777889999999999999988874 3456799999999999999999999999995  888888888777788


Q ss_pred             EEEEe----cCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec----------c-CCCeeEEEEcCCCCEEE
Q 021925           98 SVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----------P-QGRINRAVWGPLNRTII  162 (305)
Q Consensus        98 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~~l~  162 (305)
                      .++++    |++++++++..    ....+.+.+.      ...+.+..+..          | ...+..+..++++..++
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~----~~~~v~ViD~------~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v  313 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAY----WPPQYVIMDG------ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI  313 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEE----ETTEEEEEET------TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred             eeEEccccCCCCCEEEEEEc----cCCeEEEEEC------CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence            99999    69998888753    1233333332      22334333321          1 22567788888876544


Q ss_pred             -EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEEEEEee-CCCe---e
Q 021925          163 -SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT-ERPV---N  236 (305)
Q Consensus       163 -~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~v---~  236 (305)
                       ....+|.|.++|....+.+.....  ........+.|+|+|+++++++ .++.|.++|+.+++.+..+.. ....   .
T Consensus       314 v~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~  391 (567)
T 1qks_A          314 VNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR  391 (567)
T ss_dssp             EEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred             EEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc
Confidence             555679999999987543332211  2344567889999999887665 578999999999998877764 2211   2


Q ss_pred             EEE-ecCCCCcE-EEee-CCcEEEEEEee
Q 021925          237 AVT-MSPLLDHV-CIGE-PQTIKFMLLVY  262 (305)
Q Consensus       237 ~~~-~~~~~~~l-~~~~-~~~~~~~~~~~  262 (305)
                      ... ++|++..+ +++. +++.+.++...
T Consensus       392 g~~~~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          392 GANFVHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             CEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             ceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence            333 57875444 4442 44555444443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.63  E-value=7.7e-12  Score=98.37  Aligned_cols=226  Identities=10%  Similarity=-0.024  Sum_probs=152.3

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee-EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~   87 (305)
                      +...+.+++++++|++.++...++.|..|+.. ++.. ..+......+.++++.++++.+++...++.|.+||. +++..
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            45678999999999988887778899999876 3322 122234557899999999988887777889999998 55443


Q ss_pred             EEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE-EeccCCCeeEEEEcCCCCEEEEe
Q 021925           88 FTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        88 ~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      ....  ....+..+++.+++.+.++....     ..+...+.       .++.... .......+..++++++++..++.
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~-------~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  200 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNALWFTENQN-----NAIGRITE-------SGDITEFKIPTPASGPVGITKGNDDALWFVE  200 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEECT-------TCCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             EecCCCCCCCCceEEEcCCCCEEEEeCCC-----CEEEEEcC-------CCcEEEeeCCCCCCcceeEEECCCCCEEEEc
Confidence            2221  23567889999988777665421     11111111       1111111 22334567899999999877776


Q ss_pred             eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEEEec
Q 021925          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMS  241 (305)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~  241 (305)
                      ..++.|.+||. +++... +.. ..+...+.+++++++|+++++...++.|..||. +++. ..+.   ....+.++++ 
T Consensus       201 ~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-  274 (299)
T 2z2n_A          201 IIGNKIGRITT-SGEITE-FKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-  274 (299)
T ss_dssp             TTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-
T ss_pred             cCCceEEEECC-CCcEEE-EEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-
Confidence            66889999999 665433 321 134567899999999987666667899999998 4543 3332   3456889999 


Q ss_pred             CCCCcEEEeeCCc
Q 021925          242 PLLDHVCIGEPQT  254 (305)
Q Consensus       242 ~~~~~l~~~~~~~  254 (305)
                      +++++.++...++
T Consensus       275 ~~g~l~v~~~~~~  287 (299)
T 2z2n_A          275 DGETIWFAMECDK  287 (299)
T ss_dssp             CSSCEEEEETTTE
T ss_pred             cCCCEEEEecCCc
Confidence            8887666655443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.62  E-value=1.9e-13  Score=120.67  Aligned_cols=229  Identities=13%  Similarity=0.004  Sum_probs=145.0

Q ss_pred             CCCCEEEEeeCC-Cc--eEEEEc--CCCeeeEEe------cCCCcceEEEEEcCCCcEEEEEeCCC-----cEEEEecCC
Q 021925           20 KDGDLLFSCAKD-HT--PTVWFA--DNGERLGTY------RGHNGAVWCCDVSRDSMTLITGSADQ-----TAKLWNVET   83 (305)
Q Consensus        20 ~~~~~l~s~~~d-g~--v~iw~~--~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~s~~~dg-----~v~vwd~~~   83 (305)
                      |+|++++....+ +.  -.+|-.  ..++....+      .+|...+..++|||||++|+.++.++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            889887765433 22  245544  334432222      13445689999999999998765533     899999999


Q ss_pred             CCeeEEEeeCCCceEEEEecCCceEEEeCCcce-----------eeeeeEEEEEeecccCCCCCceEEEEec--cCCCee
Q 021925           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM-----------ELNSAIHVKRIARDPADQGGESVLILKG--PQGRIN  150 (305)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~  150 (305)
                      ++..........+..++|+|+++.++.+.....           .....+..+++...    ..+.......  +...+.
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~----~~~~~~v~~~~~~~~~~~  236 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD----QSEDILCAEFPDEPKWMG  236 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC----GGGCEEEECCTTCTTCEE
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCC----cccceEEeccCCCCeEEE
Confidence            987764444444778999999998887764322           11122444443211    1111222232  455578


Q ss_pred             EEEEcCCCCEEEEeeC-----CCcEEEEeCCC------Cc-EeeeeccccCCccceEEEEEcCCCCEEEEEeCC----Ce
Q 021925          151 RAVWGPLNRTIISAGE-----DAIVRIWDTET------GK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLD----KS  214 (305)
Q Consensus       151 ~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~  214 (305)
                      .+.|+|+|++|+.++.     +..|++||+.+      +. ....+.   .+...+.. .|+|+|+.|+..+.+    +.
T Consensus       237 ~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~  312 (710)
T 2xdw_A          237 GAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI---DNFEGEYD-YVTNEGTVFTFKTNRHSPNYR  312 (710)
T ss_dssp             EEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE---CSSSSCEE-EEEEETTEEEEEECTTCTTCE
T ss_pred             EEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee---CCCCcEEE-EEeccCCEEEEEECCCCCCCE
Confidence            8999999999987764     57899999976      42 344443   34444444 478888887766653    36


Q ss_pred             EEEEEcCCceE--EEEE-eeCC--CeeEEEecCCCCcEEEeeCCcEE
Q 021925          215 AKLWDARTLEL--IKTY-VTER--PVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       215 i~iwd~~~~~~--~~~~-~~~~--~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      |.+||+.+++.  ...+ .+..  .+..++|++++.+++++..++..
T Consensus       313 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          313 LINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence            99999987642  2333 3322  57889999877777777766653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.62  E-value=2.1e-12  Score=104.71  Aligned_cols=226  Identities=8%  Similarity=-0.056  Sum_probs=143.0

Q ss_pred             EEEEcCCCCEEEEee----------CCCceEEEEcCCCeeeEEecCC-------CcceEEEEEcCCCcEEEEEeC--CCc
Q 021925           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH-------NGAVWCCDVSRDSMTLITGSA--DQT   75 (305)
Q Consensus        15 ~~~~~~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~s~~~--dg~   75 (305)
                      .++++|||+.++.+.          .++.|.+||..+.+.+.++...       ......+.|+|||++|++++.  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999999875          3678999999998887776432       123468999999999998874  578


Q ss_pred             EEEEecCCCCeeEE-EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE------EeccCCC
Q 021925           76 AKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI------LKGPQGR  148 (305)
Q Consensus        76 v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  148 (305)
                      |.++| .+++.+.. +..+..   +.+.|.+...+....+    ++.....+. .      ++....      ..+....
T Consensus       150 v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~----dg~~~~vd~-~------g~~~~~~~~~~~~~~~~p~  214 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCA----QGGLAKTDH-A------GGAAGAGLVGAMLTAAQNL  214 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcC----CCCEEEEEC-C------CcEEEEEeccccccCCcce
Confidence            99999 99988877 654432   3344443222211100    111111111 0      000000      0111111


Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCc--Eeeeecccc-------CCccceEEEEEcCCCCEEEEEeC--------
Q 021925          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGK--LLKESDKET-------GHKKTITSLAKAADGSHFLTGSL--------  211 (305)
Q Consensus       149 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~--------  211 (305)
                      .....+.+++..++..+..+.+.+.|+....  .+..+....       ........+.++|+++.++++..        
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~  294 (373)
T 2mad_H          215 LTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH  294 (373)
T ss_pred             eecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccccc
Confidence            1224556666555555577899999997543  222221100       01223445789999988877653        


Q ss_pred             --CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC-cEEEee-CCcE
Q 021925          212 --DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVCIGE-PQTI  255 (305)
Q Consensus       212 --dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~~~~  255 (305)
                        .+.|.++|+.+++.+.++.......+++|+|||+ .++++. .++.
T Consensus       295 ~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~  342 (373)
T 2mad_H          295 AAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEV  342 (373)
T ss_pred             CCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCe
Confidence              3579999999999999998777799999999999 677766 3554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=2.1e-13  Score=120.09  Aligned_cols=230  Identities=7%  Similarity=-0.040  Sum_probs=141.0

Q ss_pred             cCCCCEEEEeeCCC---ceEEEE--cCCCeeeEEec------CCCcceEEEEEcCCCcEEE-----EEeCCCcEEEEecC
Q 021925           19 NKDGDLLFSCAKDH---TPTVWF--ADNGERLGTYR------GHNGAVWCCDVSRDSMTLI-----TGSADQTAKLWNVE   82 (305)
Q Consensus        19 ~~~~~~l~s~~~dg---~v~iw~--~~~~~~~~~~~------~~~~~v~~i~~~~~~~~l~-----s~~~dg~v~vwd~~   82 (305)
                      +|+|++++....++   .-.+|-  ...++....+.      +|...+.+++|||||++|+     .|+.+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            47899888766544   345554  33444333322      4556799999999999998     34445789999999


Q ss_pred             CCCee-EEEeeCCCceEEEEecCCceEEEeCCcce--------eeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEE
Q 021925           83 TGAQL-FTFNFDSPARSVDFAVGDKLAVITTDPFM--------ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (305)
Q Consensus        83 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (305)
                      +++.+ ...........++|+|+++.++.+.....        .....+..+++....  .....+.....+...+..+.
T Consensus       156 tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~--~~~~lv~~~~~~~~~~~~~~  233 (695)
T 2bkl_A          156 SGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP--SKDTVVHERTGDPTTFLQSD  233 (695)
T ss_dssp             TCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG--GGCEEEECCCCCTTCEEEEE
T ss_pred             CCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc--hhceEEEecCCCCEEEEEEE
Confidence            98865 21111122378999999998887754221        112224444442211  00112222334556788999


Q ss_pred             EcCCCCEEEEeeCCC----cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe---CCCeEEEEEcCCceE-
Q 021925          154 WGPLNRTIISAGEDA----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLEL-  225 (305)
Q Consensus       154 ~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~-  225 (305)
                      |+|+|++|+.++.++    .|+++|..+++.. .+.   .+...+....+ ++|.+++.+.   .++.|.+||+.+++. 
T Consensus       234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~---~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~  308 (695)
T 2bkl_A          234 LSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV---KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARA  308 (695)
T ss_dssp             ECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE---ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee---cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCcc
Confidence            999999998877665    7888876655433 333   23444555556 5666444443   258899999987653 


Q ss_pred             --EEEEee--CCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          226 --IKTYVT--ERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       226 --~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                        ...+.+  ...+..++|+ ++.++++...++..
T Consensus       309 ~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~  342 (695)
T 2bkl_A          309 SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATS  342 (695)
T ss_dssp             GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEE
T ss_pred             CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence              333332  4457888888 56667776666653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.59  E-value=3.3e-11  Score=94.78  Aligned_cols=231  Identities=12%  Similarity=0.045  Sum_probs=156.0

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE-EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      +......+.+++++++|+..++...++.|.+||.. ++... .+......+.++++.++++.+++...++.|..+|.. +
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            34455678999999999988877778999999977 55433 223334678999999999877777667889999987 5


Q ss_pred             CeeEEEee---CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE-EEeccCCCeeEEEEcCCCCE
Q 021925           85 AQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        85 ~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~  160 (305)
                      +. ..+..   ...+..+++.+++.+.++.....     .+...+.      . ++... .+......+..++++++++.
T Consensus        93 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-----~i~~~~~------~-g~~~~~~~~~~~~~~~~i~~d~~g~l  159 (300)
T 2qc5_A           93 GF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGD-----RIGKLTA------D-GTIYEYDLPNKGSYPAFITLGSDNAL  159 (300)
T ss_dssp             CE-EEEECSSTTCCEEEEEECSTTCEEEEETTTT-----EEEEECT------T-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred             Ce-EEecCCCCCCCCccceECCCCCEEEEccCCC-----eEEEECC------C-CCEEEccCCCCCCCceeEEECCCCCE
Confidence            54 33332   35678899999888777654311     1111111      1 11111 12223456889999999996


Q ss_pred             EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE-Ee-eCCCeeEE
Q 021925          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT-YV-TERPVNAV  238 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~  238 (305)
                      .++...++.|..+|. +++... +.. ......+..++++++|++.++....+.|.++|. +++.... .. ....+.++
T Consensus       160 ~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i  235 (300)
T 2qc5_A          160 WFTENQNNSIGRITN-TGKLEE-YPL-PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAI  235 (300)
T ss_dssp             EEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred             EEEecCCCeEEEECC-CCcEEE-eeC-CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEE
Confidence            666666789999998 555443 221 133457889999999987777767788999998 4544332 22 34568899


Q ss_pred             EecCCCCcEEEeeCCcE
Q 021925          239 TMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       239 ~~~~~~~~l~~~~~~~~  255 (305)
                      +++++|++.++...++.
T Consensus       236 ~~d~~g~l~v~~~~~~~  252 (300)
T 2qc5_A          236 TAGKNSEIWFTEWGANQ  252 (300)
T ss_dssp             EECSTTCEEEEETTTTE
T ss_pred             EECCCCCEEEeccCCCe
Confidence            99999986555544444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.59  E-value=6.2e-13  Score=106.78  Aligned_cols=225  Identities=13%  Similarity=0.060  Sum_probs=153.5

Q ss_pred             EEEEcCCCCEEEEee----------CCCceEEEEcCCCeeeEEecCCC-------cceEEEEEcCCCcEEEEEeC--CCc
Q 021925           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGSA--DQT   75 (305)
Q Consensus        15 ~~~~~~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~s~~~--dg~   75 (305)
                      .++++|||++++++.          .++.|.+||..+++.+.++.-..       .....++|+|||++++++..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            499999999887765          35789999999999888875221       23567899999999888764  689


Q ss_pred             EEEEecCCCCeeEEEeeCCC--------ceEEEEecCCceEEEeCCcceeeeeeE-EEEEeecccC-------CCCC---
Q 021925           76 AKLWNVETGAQLFTFNFDSP--------ARSVDFAVGDKLAVITTDPFMELNSAI-HVKRIARDPA-------DQGG---  136 (305)
Q Consensus        76 v~vwd~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~---  136 (305)
                      |.++|+.+++.+.++..+..        -.-+..+++|+++++............ ...+......       ...+   
T Consensus       162 VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~  241 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV  241 (386)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             EEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE
Confidence            99999999999988874331        112467778888777765311110000 0000000000       0001   


Q ss_pred             -----ceEEEEecc-----------------------CCCeeEEEEcCCCCEEEEeeC----------CCcEEEEeCCCC
Q 021925          137 -----ESVLILKGP-----------------------QGRINRAVWGPLNRTIISAGE----------DAIVRIWDTETG  178 (305)
Q Consensus       137 -----~~~~~~~~~-----------------------~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~  178 (305)
                           ..+..+...                       ......++++|+++.++....          ...|.+.|+.++
T Consensus       242 ~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~  321 (386)
T 3sjl_D          242 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG  321 (386)
T ss_dssp             EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC
Confidence                 111112111                       112234677888887777642          257999999999


Q ss_pred             cEeeeeccccCCccceEEEEEcCCCC-EEEEEe-CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCC
Q 021925          179 KLLKESDKETGHKKTITSLAKAADGS-HFLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVTMSPL  243 (305)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  243 (305)
                      +.++.+.    -...+..+++++|++ .|++.. .++.|.++|..+++.++++......+.+.+++|
T Consensus       322 kv~~~i~----vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          322 ERLAKFE----MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             CEEEEEE----EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             eEEEEEE----CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            9999886    345788999999997 666654 589999999999999999997777788888877

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.59  E-value=4.9e-13  Score=103.75  Aligned_cols=200  Identities=7%  Similarity=-0.073  Sum_probs=136.3

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      ...+.+++++++|+++++.. ++.|.+||...... ..+. .....+.++++.++|+.+++...++.|.+|+..+.....
T Consensus        66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~  143 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV  143 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE
T ss_pred             cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe
Confidence            35688999999998666655 88999999765543 3333 233578999999999877777778899999866554432


Q ss_pred             EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925           89 TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (305)
Q Consensus        89 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  167 (305)
                      ... ....+..+++.+++.+.++....     ..+..++..      ..........+...+..++++++|..+++...+
T Consensus       144 ~~~~~~~~p~~i~~~~~g~l~v~~~~~-----~~i~~~~~~------~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~  212 (270)
T 1rwi_B          144 LPFTGLNDPDGVAVDNSGNVYVTDTDN-----NRVVKLEAE------SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT  212 (270)
T ss_dssp             CCCCSCCSCCCEEECTTCCEEEEEGGG-----TEEEEECTT------TCCEEECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred             eccccCCCceeEEEeCCCCEEEEECCC-----CEEEEEecC------CCceEeecccCCCCceEEEECCCCCEEEEECCC
Confidence            222 22467889999988866554421     122222211      111111112233668899999999777777778


Q ss_pred             CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE
Q 021925          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (305)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  225 (305)
                      +.|.+||........ ..  ..+...+.+++++++|+++++...+++|+++++...+.
T Consensus       213 ~~v~~~~~~~~~~~~-~~--~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          213 NQVVKLLAGSTTSTV-LP--FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             SCEEEECTTCSCCEE-CC--CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CcEEEEcCCCCccee-ec--cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            899999987654332 21  12335789999999999888888999999999876554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=1.3e-12  Score=102.80  Aligned_cols=202  Identities=12%  Similarity=0.013  Sum_probs=135.0

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCC----CcceEEEEEcCCCcEEEEE----e------
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH----NGAVWCCDVSRDSMTLITG----S------   71 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~s~----~------   71 (305)
                      +..+...+.+++++|+|+++++...++.|.+||..+++........    ...+.+++++|+|+++++.    +      
T Consensus        64 ~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~  143 (296)
T 3e5z_A           64 EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEG  143 (296)
T ss_dssp             EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGS
T ss_pred             EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccc
Confidence            4456677999999999998887777789999998787754433221    1346789999999988873    2      


Q ss_pred             -------CCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCce---EEE
Q 021925           72 -------ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES---VLI  141 (305)
Q Consensus        72 -------~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  141 (305)
                             ..+.|..++.. ++.............++++|+++.+++...     ...+..+++..     .+..   ...
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~-----~~~i~~~~~~~-----~g~~~~~~~~  212 (296)
T 3e5z_A          144 YGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTG-----DNATHRYCLNA-----RGETEYQGVH  212 (296)
T ss_dssp             SCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETT-----TTEEEEEEECS-----SSCEEEEEEE
T ss_pred             ccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCC-----CCeEEEEEECC-----CCcCcCCCeE
Confidence                   12345555554 444333335556788999999998844443     22334444321     1111   122


Q ss_pred             EeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE-cCCCCEEEEEeCCCeEEEEEc
Q 021925          142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK-AADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      +..+...+..++++++|++.++.  ++.|.+||.. ++.+..+.   .+.. +++++| .|+++.|++++.+ .+.-++.
T Consensus       213 ~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~---~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~  284 (296)
T 3e5z_A          213 FTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL---TPQT-TSNLCFGGPEGRTLYMTVST-EFWSIET  284 (296)
T ss_dssp             ECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE---CSSC-CCEEEEESTTSCEEEEEETT-EEEEEEC
T ss_pred             eeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE---CCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEc
Confidence            23355667789999999866655  7899999986 77777665   3444 888999 6899888888876 4656666


Q ss_pred             CCceEE
Q 021925          221 RTLELI  226 (305)
Q Consensus       221 ~~~~~~  226 (305)
                      ++.+..
T Consensus       285 ~~~~~~  290 (296)
T 3e5z_A          285 NVRGLE  290 (296)
T ss_dssp             SCCBCC
T ss_pred             cccccc
Confidence            655443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.58  E-value=7.9e-13  Score=102.78  Aligned_cols=177  Identities=11%  Similarity=0.098  Sum_probs=135.0

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC--CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE
Q 021925           63 DSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL  140 (305)
Q Consensus        63 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (305)
                      .++.|++++.|+.|.+||.++++.+.++....  .+.++.+.|++++++.. +..      +..++       ..++.+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~-~~~------V~~~d-------~~G~~~W   69 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSY-SKG------AKMIT-------RDGRELW   69 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEEC-BSE------EEEEC-------TTSCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeC-CCC------EEEEC-------CCCCEEE
Confidence            45789999999999999999999999998654  68999999999988843 211      11111       1244555


Q ss_pred             EEecc-CCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCCcEeeeecccc---CCccceEEEEEcCCCCEEEEEeCCCeE
Q 021925          141 ILKGP-QGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKET---GHKKTITSLAKAADGSHFLTGSLDKSA  215 (305)
Q Consensus       141 ~~~~~-~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i  215 (305)
                      .+..+ ...+.++.+.|+|+.+++.+. ++.|..+|. +++.+..+....   .+......++..++|+++++...++.|
T Consensus        70 ~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v  148 (276)
T 3no2_A           70 NIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEV  148 (276)
T ss_dssp             EEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEE
T ss_pred             EEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEE
Confidence            55544 246788999999999999887 788888886 677776654211   122345566788999999999999999


Q ss_pred             EEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          216 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       216 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ..||.+ |+.+.++.....+.++...++|+.++++..++.
T Consensus       149 ~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~  187 (276)
T 3no2_A          149 REIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHC  187 (276)
T ss_dssp             EEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSE
T ss_pred             EEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCe
Confidence            999988 999999986667788899999999888877654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.56  E-value=3.9e-13  Score=108.37  Aligned_cols=145  Identities=8%  Similarity=-0.005  Sum_probs=113.9

Q ss_pred             CceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         2 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      +|.....+.+ |+.++|  |+++|+++ .++.|++||+.+.........|..++.++.+.+.  .+++++.||.|.+||+
T Consensus        80 ~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl  153 (388)
T 1xip_A           80 TFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDL  153 (388)
T ss_dssp             CCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEET
T ss_pred             cceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEc
Confidence            3434445777 999999  89999998 8899999999887766667778888999888764  3888999999999999


Q ss_pred             CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      .+++...                                                        +...|++++|||+|  +
T Consensus       154 ~~~~~~~--------------------------------------------------------~~~~Vs~v~WSpkG--~  175 (388)
T 1xip_A          154 RTKSTKQ--------------------------------------------------------LAQNVTSFDVTNSQ--L  175 (388)
T ss_dssp             TTCCEEE--------------------------------------------------------EEESEEEEEECSSE--E
T ss_pred             cCCcccc--------------------------------------------------------ccCCceEEEEcCCc--e
Confidence            8765421                                                        12358899999999  7


Q ss_pred             EEeeCCCcEEEEeCCCCcE--eeeeccc------cCCccceEEEEEcCCCCEEEEEe
Q 021925          162 ISAGEDAIVRIWDTETGKL--LKESDKE------TGHKKTITSLAKAADGSHFLTGS  210 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~--~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~  210 (305)
                      +.|..||.+++|+...++.  .+.+...      .+|...|.++.|.+++.++++-+
T Consensus       176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            7899999999999887764  4455211      13678899999999999888733

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.54  E-value=1.3e-10  Score=91.36  Aligned_cols=224  Identities=8%  Similarity=-0.028  Sum_probs=150.6

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE-EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      .+...+.+++++++|++.++...++.|..+|.. ++... .+......+.++++.++++.+++...++.|..+|.. ++.
T Consensus        59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~  136 (300)
T 2qc5_A           59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI  136 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence            344678999999999888877667889999977 55432 222234678999999999888777768899999987 554


Q ss_pred             eEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE-EEeccCCCeeEEEEcCCCCEEE
Q 021925           87 LFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        87 ~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      . .+.   ....+..+++.+++++.++.....     .+...+.       .++... ....+...+..++++++++..+
T Consensus       137 ~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-----~i~~~~~-------~g~~~~~~~~~~~~~~~~i~~d~~g~l~v  203 (300)
T 2qc5_A          137 Y-EYDLPNKGSYPAFITLGSDNALWFTENQNN-----SIGRITN-------TGKLEEYPLPTNAAAPVGITSGNDGALWF  203 (300)
T ss_dssp             E-EEECSSTTCCEEEEEECTTSSEEEEETTTT-----EEEEECT-------TCCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             E-EccCCCCCCCceeEEECCCCCEEEEecCCC-----eEEEECC-------CCcEEEeeCCCCCCCcceEEECCCCCEEE
Confidence            4 332   235678899999888666554211     1111111       111111 1123345688999999998777


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEEE
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVT  239 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~  239 (305)
                      +....+.|.+||. +++......  ......+.+++++++|++.++...++.|..+|. +++.. .+.   ....+.+++
T Consensus       204 ~~~~~~~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~  278 (300)
T 2qc5_A          204 VEIMGNKIGRITT-TGEISEYDI--PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGIT  278 (300)
T ss_dssp             EETTTTEEEEECT-TCCEEEEEC--SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEE
T ss_pred             EccCCCEEEEEcC-CCcEEEEEC--CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeE
Confidence            6666788999998 454433211  134567889999999987776666799999998 44433 332   345688999


Q ss_pred             ecCCCCcEEEee
Q 021925          240 MSPLLDHVCIGE  251 (305)
Q Consensus       240 ~~~~~~~l~~~~  251 (305)
                      ++++|++.++..
T Consensus       279 ~~~~g~l~v~~~  290 (300)
T 2qc5_A          279 FGKDGSVWFALK  290 (300)
T ss_dssp             ECTTSCEEEECS
T ss_pred             eCCCCCEEEEcc
Confidence            999998655544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=8.7e-12  Score=100.28  Aligned_cols=240  Identities=8%  Similarity=-0.003  Sum_probs=144.4

Q ss_pred             cceEEEEEcCCCCEEEEee--CCCceEEEEcCCCeeeEEe-------cCCCcceEEEEEcCCCcEEEEEeC-----CCcE
Q 021925           11 RPLTYLKYNKDGDLLFSCA--KDHTPTVWFADNGERLGTY-------RGHNGAVWCCDVSRDSMTLITGSA-----DQTA   76 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~--~dg~v~iw~~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~l~s~~~-----dg~v   76 (305)
                      ..+..++++|+|+.+++..  .++.++||.+.+++.. .+       ..+-..+.+++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999988864  2343666666555532 22       124567999999999876665433     5789


Q ss_pred             EEEecCCCCeeEEEeeC-------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEe--------eccc-CCCCCceEE
Q 021925           77 KLWNVETGAQLFTFNFD-------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI--------ARDP-ADQGGESVL  140 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~  140 (305)
                      .+||+.+++.+..+..+       ..+..+++.+++..++++.... .....+.+++.        .... .........
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~-~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP-DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS-GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc-CCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            99999999877777643       2458899998654444432200 00112222221        1100 000000000


Q ss_pred             EEec--------------cCCCeeEEEEcCCCCEEEEeeCCC-cEEEEeCC---CCcE-----eeeeccccCCccceEEE
Q 021925          141 ILKG--------------PQGRINRAVWGPLNRTIISAGEDA-IVRIWDTE---TGKL-----LKESDKETGHKKTITSL  197 (305)
Q Consensus       141 ~~~~--------------~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~---~~~~-----~~~~~~~~~~~~~v~~~  197 (305)
                      ...+              -...+..++++|+++.|+.+..++ .+..++..   .+..     ...+. ..++......+
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgi  253 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGI  253 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCE
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceE
Confidence            0000              112467899999999888887765 55555432   1110     00000 00223355678


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee--CCCeeEEEecCCCCcEEEeeCC
Q 021925          198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~  253 (305)
                      +++++|+++++...++.|.+||.++++.......  ...+.++++.++++++++++..
T Consensus       254 a~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          254 SIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             EECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             EECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            9999999999988999999999856664333332  3457899999998877766543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.53  E-value=1.1e-12  Score=115.38  Aligned_cols=229  Identities=10%  Similarity=0.072  Sum_probs=145.0

Q ss_pred             ccccceEEEEEcCCCCEEEEe-----eCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCc-------
Q 021925            8 GHERPLTYLKYNKDGDLLFSC-----AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT-------   75 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~-----~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~-------   75 (305)
                      +|...+..++|||||++||.+     +.+..|++||+.+++.+.... +......++|+ |++.|+.++.+..       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            456678999999999998853     333579999999998654311 11113577899 9999988887743       


Q ss_pred             ------EEEEecCCCCe--eEEEeeC----CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe
Q 021925           76 ------AKLWNVETGAQ--LFTFNFD----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (305)
Q Consensus        76 ------v~vwd~~~~~~--~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (305)
                            |++|++.+++.  ...+...    .....+.++|+++.++........ ...+.+.++..     .......+.
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-~~~i~~~d~~~-----~~~~~~~l~  277 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS-GNRLYVKDLSQ-----ENAPLLTVQ  277 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS-CCEEEEEETTS-----TTCCCEEEE
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC-CcEEEEEECCC-----CCCceEEEe
Confidence                  99999987653  2333322    235788999999988765432111 12333333221     112344455


Q ss_pred             ccCCCeeEEEEcCCCCEEEEee-CC---CcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeC-CC--e
Q 021925          144 GPQGRINRAVWGPLNRTIISAG-ED---AIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--S  214 (305)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~~~~-~d---g~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~  214 (305)
                      .+....... ++++++.|+..+ .+   +.|..+|+.++..  .+.+.   .+...+.  .|+++++.|+.... ++  .
T Consensus       278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~--~~s~~g~~lv~~~~~~g~~~  351 (693)
T 3iuj_A          278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQQVL--TVHSGSGYLFAEYMVDATAR  351 (693)
T ss_dssp             CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred             CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCCCEE--EEEEECCEEEEEEEECCeeE
Confidence            566555555 666666555443 33   6899999987653  22333   3444444  88898888876665 44  6


Q ss_pred             EEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEee
Q 021925          215 AKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       215 i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      |++||+..+ ....+.  ....+..+.++|+++.++...
T Consensus       352 l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~  389 (693)
T 3iuj_A          352 VEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGF  389 (693)
T ss_dssp             EEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEE
T ss_pred             EEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEe
Confidence            899998754 344444  334577788888988777654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.52  E-value=1.5e-11  Score=97.56  Aligned_cols=204  Identities=9%  Similarity=0.043  Sum_probs=132.4

Q ss_pred             cccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCeeeEE-ecC----CCcceEEEEEcCCCcEEEEEeCC---------
Q 021925            9 HERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGT-YRG----HNGAVWCCDVSRDSMTLITGSAD---------   73 (305)
Q Consensus         9 h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~~~-~~~----~~~~v~~i~~~~~~~~l~s~~~d---------   73 (305)
                      +...+.+++++++ |+++++.. .+.|.+||.+ ++.... ...    ....+.+++++++|+.+++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            5577899999999 76555544 4478999987 665433 221    12358899999999877776654         


Q ss_pred             ------CcEEEEecCCCCeeEEEeeCCCceEEEEe----cCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe
Q 021925           74 ------QTAKLWNVETGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (305)
Q Consensus        74 ------g~v~vwd~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (305)
                            +.|..+|.. ++.............++++    ++++.++++...    ...+..++...............+.
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~  221 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP----TKKLWSYDIKGPAKIENKKVWGHIP  221 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT----TTEEEEEEEEETTEEEEEEEEEECC
T ss_pred             cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECC----CCeEEEEECCCCCccccceEEEECC
Confidence                  567777765 5544444444566889999    998765554321    1223333322100000001112222


Q ss_pred             ccC-CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEE-EEeCCCeEEEEEcC
Q 021925          144 GPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDAR  221 (305)
Q Consensus       144 ~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~  221 (305)
                      .+. ..+..++++++|+++++...++.|.+||..+++.+..+.   .+...+.+++++|+++.|+ +...++.|..|++.
T Consensus       222 ~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe---CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            333 557889999999988887788999999998777666554   3457789999999999554 44556889999976


Q ss_pred             C
Q 021925          222 T  222 (305)
Q Consensus       222 ~  222 (305)
                      .
T Consensus       299 ~  299 (314)
T 1pjx_A          299 R  299 (314)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.52  E-value=1.5e-11  Score=98.91  Aligned_cols=205  Identities=11%  Similarity=0.018  Sum_probs=142.5

Q ss_pred             ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe----------CCCcEEEEecCCCCeeEEEeeC--------C
Q 021925           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETGAQLFTFNFD--------S   94 (305)
Q Consensus        33 ~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~--------~   94 (305)
                      .|.+.|..+++.+.++..-..+  .+.++||+++++++.          .++.|.+||..+++.+.++..+        .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999999999765556  799999999988886          3688999999999999999865        4


Q ss_pred             CceEEEEecCCceEEEeCC---cceee--eeeEEEEEeeccc----------------C--------CCC-----C----
Q 021925           95 PARSVDFAVGDKLAVITTD---PFMEL--NSAIHVKRIARDP----------------A--------DQG-----G----  136 (305)
Q Consensus        95 ~v~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~----------------~--------~~~-----~----  136 (305)
                      ....+.++|+++.++++..   .....  ........+....                .        ...     +    
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~  204 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA  204 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE
Confidence            5789999999998888742   22222  1110011110000                0        000     0    


Q ss_pred             --------------------------ceEEEEeccC-----------------------CCeeEEEEcCCCCEEEEeeC-
Q 021925          137 --------------------------ESVLILKGPQ-----------------------GRINRAVWGPLNRTIISAGE-  166 (305)
Q Consensus       137 --------------------------~~~~~~~~~~-----------------------~~i~~~~~~~~~~~l~~~~~-  166 (305)
                                                ..+..+....                       .....+.++|+++.++.+.. 
T Consensus       205 ~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~  284 (368)
T 1mda_H          205 QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE  284 (368)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             EeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence                                      0000011000                       00112679999988876543 


Q ss_pred             --------CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCE-EEEEe-CCCeEEEEEcCCceEEEEEeeCCCee
Q 021925          167 --------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGS-LDKSAKLWDARTLELIKTYVTERPVN  236 (305)
Q Consensus       167 --------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~v~  236 (305)
                              ++.+.++|+.+.+.+..+.    -......++|+|||+. +++.. .++.|.++|+.+++.+.++.......
T Consensus       285 ~~~~~~~~~~~~~ViD~~t~~vv~~i~----vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~  360 (368)
T 1mda_H          285 HSRSCLAAAENTSSVTASVGQTSGPIS----NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE  360 (368)
T ss_dssp             CSSCTTSCEEEEEEEESSSCCEEECCE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred             ccCcccccCCCEEEEECCCCeEEEEEE----CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence                    2356799999999998886    2346889999999985 55555 59999999999999999998777778


Q ss_pred             EEEecCC
Q 021925          237 AVTMSPL  243 (305)
Q Consensus       237 ~~~~~~~  243 (305)
                      .+++.+.
T Consensus       361 ~i~~~~~  367 (368)
T 1mda_H          361 SLSVQNE  367 (368)
T ss_dssp             EEECCCC
T ss_pred             EEEeecC
Confidence            8887653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.51  E-value=5e-12  Score=103.31  Aligned_cols=239  Identities=9%  Similarity=-0.002  Sum_probs=151.7

Q ss_pred             CCCCEEEEeeCC-----CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe----------CCCcEEEEecCCC
Q 021925           20 KDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETG   84 (305)
Q Consensus        20 ~~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~dg~v~vwd~~~~   84 (305)
                      ++++.++++...     +.|.++|..+++.+.++..-..+  .+.++||+++++++.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            477766665542     69999999999999998865555  899999999888776          3678999999999


Q ss_pred             CeeEEEeeC--------CCceEEEEecCCceEEEeCC---cceeeeee---EEEEEeeccc--------------CCCCC
Q 021925           85 AQLFTFNFD--------SPARSVDFAVGDKLAVITTD---PFMELNSA---IHVKRIARDP--------------ADQGG  136 (305)
Q Consensus        85 ~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~--------------~~~~~  136 (305)
                      +.+..+..+        .....+.++|+++.++++..   ..+.....   -.+..+....              ....+
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG  239 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG  239 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence            999988754        45678999999999888642   11111110   0000110000              00000


Q ss_pred             ceEEEEeccCCCe----------------eEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe--eeecccc----C---Cc
Q 021925          137 ESVLILKGPQGRI----------------NRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDKET----G---HK  191 (305)
Q Consensus       137 ~~~~~~~~~~~~i----------------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~----~---~~  191 (305)
                      +... +....+.+                ..+.+.++++.++..+..+.+.+.|+......  ..+....    .   ..
T Consensus       240 ~~~~-V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p  318 (426)
T 3c75_H          240 SLAR-VDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP  318 (426)
T ss_dssp             SEEE-EECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred             CEEE-EECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence            0000 00011111                12345677766666667788888888654321  1111000    0   01


Q ss_pred             cceEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC-cEEEee-CCcEEEEE
Q 021925          192 KTITSLAKAADGSHFLTGSL----------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVCIGE-PQTIKFML  259 (305)
Q Consensus       192 ~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~~~~~~~~  259 (305)
                      .....++++|+++.+++...          ++.|.+.|+.+++.+.++..+.....++|+|+|+ .++++. .++...++
T Consensus       319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVI  398 (426)
T 3c75_H          319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIY  398 (426)
T ss_dssp             CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence            11223688999887776642          3579999999999999998777789999999999 888877 46664444


Q ss_pred             Ee
Q 021925          260 LV  261 (305)
Q Consensus       260 ~~  261 (305)
                      ..
T Consensus       399 D~  400 (426)
T 3c75_H          399 DA  400 (426)
T ss_dssp             ET
T ss_pred             EC
Confidence            43

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.51  E-value=6e-12  Score=102.84  Aligned_cols=218  Identities=11%  Similarity=0.044  Sum_probs=146.9

Q ss_pred             EEEEcCCCCEEEEee----------CCCceEEEEcCCCeeeEEecCC-------CcceEEEEEcCCCcEEEEEeC--CCc
Q 021925           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH-------NGAVWCCDVSRDSMTLITGSA--DQT   75 (305)
Q Consensus        15 ~~~~~~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~s~~~--dg~   75 (305)
                      .++++|||+.++.+.          .++.|.++|..+++.+.++.--       ......+.|+|||++++++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999888775          3678999999999988877521       123467899999999998874  578


Q ss_pred             EEEEecCCCCeeEEEeeCCC--------ceEEEEecCCceEEEeCCcceeeee---------------------eEEEEE
Q 021925           76 AKLWNVETGAQLFTFNFDSP--------ARSVDFAVGDKLAVITTDPFMELNS---------------------AIHVKR  126 (305)
Q Consensus        76 v~vwd~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~  126 (305)
                      |.+.|+.+++.+..+..+..        ..-+.++++++++++..........                     ....+-
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~  281 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW  281 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence            99999999999888875331        2235667777777665521111000                     000000


Q ss_pred             eecccCCCCCceEEEEecc-----------------------CCCeeEEEEcCCCCEEEEeeC----------CCcEEEE
Q 021925          127 IARDPADQGGESVLILKGP-----------------------QGRINRAVWGPLNRTIISAGE----------DAIVRIW  173 (305)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~-----------------------~~~i~~~~~~~~~~~l~~~~~----------dg~i~iw  173 (305)
                      ..     . ...+..+...                       ......++++|+++.++....          ++.|.+.
T Consensus       282 ~s-----~-~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI  355 (426)
T 3c75_H          282 PT-----Y-TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL  355 (426)
T ss_dssp             EB-----T-TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             Ee-----C-CCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence            00     0 0011111110                       111223788999887776542          3579999


Q ss_pred             eCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEe-CCCeEEEEEcCCceEEEEE-eeCCCeeEEEecCC
Q 021925          174 DTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS-LDKSAKLWDARTLELIKTY-VTERPVNAVTMSPL  243 (305)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~  243 (305)
                      |..+.+.+..+.    -......+.|+|||+ .+++.. .++.|.++|+.+++.++++ ..+.... +..+||
T Consensus       356 D~~T~kvv~~I~----vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P~-~i~~~~  423 (426)
T 3c75_H          356 NAETGERINKIE----LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGPQ-IITTHD  423 (426)
T ss_dssp             ETTTCCEEEEEE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSCC-EEECCC
T ss_pred             ECCCCeEEEEEE----CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCCc-EEEcCC
Confidence            999999999886    334688999999999 888888 5999999999999999987 3333222 455553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.51  E-value=5.7e-12  Score=111.75  Aligned_cols=228  Identities=11%  Similarity=0.001  Sum_probs=136.4

Q ss_pred             cCCCCEEEEeeCCCc---eEEEEcC-----CCeeeEEe------cCCCcceEEEEEcCCCcEEEEEeCC-----CcEEEE
Q 021925           19 NKDGDLLFSCAKDHT---PTVWFAD-----NGERLGTY------RGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLW   79 (305)
Q Consensus        19 ~~~~~~l~s~~~dg~---v~iw~~~-----~~~~~~~~------~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~vw   79 (305)
                      +|+|++++....++.   -.+|...     .++....+      .+|...+..++|+|||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            489998887665433   5666543     33332221      2233478899999999999877653     359999


Q ss_pred             ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCccee---------eeeeEEEEEeecccCCCCCceEEEEec--cCCC
Q 021925           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME---------LNSAIHVKRIARDPADQGGESVLILKG--PQGR  148 (305)
Q Consensus        80 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  148 (305)
                      |+.+++.+........+..++|+|+ +.++.+......         ....+..+++...    ..+....+..  +...
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~----~~~~~lv~~~~~~~~~  269 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTP----QSADQPVFATPELPKR  269 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSC----GGGCEEEECCTTCTTC
T ss_pred             ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCC----chhCEEEeccCCCCeE
Confidence            9999987654333333467899999 777766532210         0112333332111    1111222332  3335


Q ss_pred             eeEEEEcCCCCEEEEeeCCC-----cEEEEeCCCC--cEeeeeccccCCccceEEEEEcCCCCEEEEEeC----CCeEEE
Q 021925          149 INRAVWGPLNRTIISAGEDA-----IVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSL----DKSAKL  217 (305)
Q Consensus       149 i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i  217 (305)
                      +..+.|+|||++|+..+.++     .|++||+.++  +....+.   .+...+.... +|+|+.|+..+.    ++.|.+
T Consensus       270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~  345 (741)
T 1yr2_A          270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVR  345 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEE
T ss_pred             EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCceEEEE-eccCCEEEEEECCCCCCCEEEE
Confidence            78999999999988777543     8999999876  3133443   2333344443 488888887775    456999


Q ss_pred             EEcCCc--eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          218 WDARTL--ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       218 wd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      ||+.++  +....+. ....+..++++ ++.++++...++..
T Consensus       346 ~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~  386 (741)
T 1yr2_A          346 VDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKS  386 (741)
T ss_dssp             EECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred             EeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence            999875  3333333 33446677777 45556666666653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.47  E-value=3.7e-11  Score=96.56  Aligned_cols=237  Identities=10%  Similarity=0.021  Sum_probs=151.9

Q ss_pred             EEEcCCCCEEEEeeC-----CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe----------CCCcEEEEe
Q 021925           16 LKYNKDGDLLFSCAK-----DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWN   80 (305)
Q Consensus        16 ~~~~~~~~~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~dg~v~vwd   80 (305)
                      ....|+++.++....     ++.|.+.|..+++.+.++..-..+ . ++++|||+++++++          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            445789998888765     679999999999999998865555 4 99999999887775          367899999


Q ss_pred             cCCCCeeEEEeeCC--------CceEEEEecCCceEEEeCC---cceeeeee---EEEEEeec---------c-----cC
Q 021925           81 VETGAQLFTFNFDS--------PARSVDFAVGDKLAVITTD---PFMELNSA---IHVKRIAR---------D-----PA  132 (305)
Q Consensus        81 ~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~---------~-----~~  132 (305)
                      ..+.+.+..+..+.        ....+.++|+++.++++..   +.......   -.+..+..         .     ..
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~  195 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH  195 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEE
Confidence            99999999887543        6778999999998887642   21111100   00000000         0     00


Q ss_pred             CCC-----------CceEEEEeccC----CCe-eEEEEc-CCCCEEEEeeCCCcEEEEeCCCCc--Eeeeeccc------
Q 021925          133 DQG-----------GESVLILKGPQ----GRI-NRAVWG-PLNRTIISAGEDAIVRIWDTETGK--LLKESDKE------  187 (305)
Q Consensus       133 ~~~-----------~~~~~~~~~~~----~~i-~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~------  187 (305)
                      ...           ++.......+.    ..+ ....|. ++|++++ .+.+|.|++.|+.+..  ....+...      
T Consensus       196 ~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~  274 (386)
T 3sjl_D          196 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  274 (386)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccc
Confidence            000           11111110110    111 112443 5665444 5557999999987654  23322100      


Q ss_pred             -cCCccceEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC-cEEEeeC-Cc
Q 021925          188 -TGHKKTITSLAKAADGSHFLTGSL----------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVCIGEP-QT  254 (305)
Q Consensus       188 -~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~-~~  254 (305)
                       .-.......++++++++.++....          .++|.+.|+.+++.+..+..+.++++++++||++ .|+++.. ++
T Consensus       275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~  354 (386)
T 3sjl_D          275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDK  354 (386)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTT
T ss_pred             ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCC
Confidence             001223334677899888877643          2579999999999999999777899999999997 6666543 44


Q ss_pred             E
Q 021925          255 I  255 (305)
Q Consensus       255 ~  255 (305)
                      .
T Consensus       355 ~  355 (386)
T 3sjl_D          355 T  355 (386)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.45  E-value=1.1e-10  Score=91.81  Aligned_cols=194  Identities=11%  Similarity=0.027  Sum_probs=124.8

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC----CCcceEEEEEcCCCcEEEEEeCC---------Cc
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG----HNGAVWCCDVSRDSMTLITGSAD---------QT   75 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~s~~~d---------g~   75 (305)
                      +...+.+++++++|+++++ . ++.|.+||.++++.......    ....+.+++++|+|+++++...+         ..
T Consensus        52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~  129 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ  129 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred             CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence            3467899999999996554 4 56899999988765433321    12458899999999876654321         23


Q ss_pred             EEEEecCC-CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeeccc-CCCCCceEEEEeccCCCeeEEE
Q 021925           76 AKLWNVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP-ADQGGESVLILKGPQGRINRAV  153 (305)
Q Consensus        76 v~vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~  153 (305)
                      -.+|.+.. ++.............++|+|+++.++++...    ...+..++..... .....+....+..+.+.+..++
T Consensus       130 ~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~  205 (297)
T 3g4e_A          130 GALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSL----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMC  205 (297)
T ss_dssp             EEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGG----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEE
T ss_pred             cEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCC----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeE
Confidence            45665543 3333333344556789999999877655432    1223333321000 0000011222233445678899


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc-CCCCEEEEEeC
Q 021925          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA-ADGSHFLTGSL  211 (305)
Q Consensus       154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~  211 (305)
                      ++++|++.++...++.|..||..+++.+..+.   .+...+++++|. |+++.|+.++.
T Consensus       206 ~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~---~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          206 IDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK---LPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EBTTSCEEEEEETTTEEEEECTTTCCEEEEEE---CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             ECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE---CCCCCceEEEEeCCCCCEEEEEcC
Confidence            99999888777778899999999899888876   345679999998 88777665543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.41  E-value=2.7e-13  Score=110.01  Aligned_cols=202  Identities=13%  Similarity=0.053  Sum_probs=112.1

Q ss_pred             CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC--Cce-
Q 021925           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PAR-   97 (305)
Q Consensus        21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~v~-   97 (305)
                      ++..+++++.||.|+.||..+|+.+.++..  +.+.+..+..++..+++++.||.|+.||.++++.+..+....  .+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567899999999999999999999988875  455555566677788888899999999999998876654221  010 


Q ss_pred             EEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 021925           98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET  177 (305)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  177 (305)
                      ...+..++. ++++..     .+.+..++..      .++....+..+.    ...++|++..+++++.|+.|+.||.++
T Consensus        86 sp~~~~~~~-v~~g~~-----dg~v~a~D~~------tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~t  149 (369)
T 2hz6_A           86 SPCRSSDGI-LYMGKK-----QDIWYVIDLL------TGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKT  149 (369)
T ss_dssp             CSCC------CCCCEE-----EEEEEEECCC--------------------------------EEEEEEEEEEECCCSSS
T ss_pred             CceEecCCE-EEEEeC-----CCEEEEEECC------CCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCC
Confidence            011112222 222211     1222222221      122222222222    134566788899999999999999999


Q ss_pred             CcEeeeeccccCCccceEEEEEcCCC---CEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE-EEecCCCC
Q 021925          178 GKLLKESDKETGHKKTITSLAKAADG---SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA-VTMSPLLD  245 (305)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~-~~~~~~~~  245 (305)
                      ++.+..+..   .  .....++.++.   ..+++++.||.++.||.++++.+.++....++.. ..++++|.
T Consensus       150 G~~~W~~~~---~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          150 RELRWNATY---F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             SSCCCEEEE---E--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred             CCEEEeEec---c--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence            987766541   1  11223333332   4677888999999999999999988886666543 44555653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.39  E-value=1.5e-10  Score=97.12  Aligned_cols=224  Identities=11%  Similarity=0.020  Sum_probs=154.8

Q ss_pred             CCCEEEEeeC-CCceEEEEcCCCeeeEEecC-CCcceEEEEE-c-CCCcEEEEEe------------------CCCcEEE
Q 021925           21 DGDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDV-S-RDSMTLITGS------------------ADQTAKL   78 (305)
Q Consensus        21 ~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~-~-~~~~~l~s~~------------------~dg~v~v   78 (305)
                      ||++++.... ++.|.+.|+.+.+..+.+.- .......+++ . |+++++++++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            8888877665 45799999999998874432 2345788888 5 8999998884                  2467999


Q ss_pred             EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCccee---------------------------------eeeeEEEE
Q 021925           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME---------------------------------LNSAIHVK  125 (305)
Q Consensus        79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~  125 (305)
                      .|.++.+...++..+.....++++|+++++++++.+...                                 ..+.+.+.
T Consensus       180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI  259 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  259 (595)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence            999999999999976788999999999999988743211                                 00112222


Q ss_pred             EeecccCCCCCce-EEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCc------------EeeeeccccCCc
Q 021925          126 RIARDPADQGGES-VLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGK------------LLKESDKETGHK  191 (305)
Q Consensus       126 ~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~~~~~~~~~  191 (305)
                      +....    ..+. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+            ....+.    -.
T Consensus       260 D~~~~----~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~----vG  330 (595)
T 1fwx_A          260 DGRKE----ASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE----LG  330 (595)
T ss_dssp             ECSGG----GCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB----CC
T ss_pred             eCccc----CCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC----CC
Confidence            22110    0112 222221 23456799999999888766 47899999998653            233332    34


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCeEEEEEcCC----------ceEEEEEeeCCCe------eEEEecCCCCcEEEeeCC
Q 021925          192 KTITSLAKAADGSHFLTGSLDKSAKLWDART----------LELIKTYVTERPV------NAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~~  253 (305)
                      .....++|+|+|...++.-.|++|.+||+.+          .+.+..+......      ..+..+|||++|+++..-
T Consensus       331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~  408 (595)
T 1fwx_A          331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF  408 (595)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred             CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence            5688999999994455666799999999987          4566666633222      233568999999998543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.39  E-value=1.3e-09  Score=88.47  Aligned_cols=197  Identities=10%  Similarity=-0.034  Sum_probs=127.5

Q ss_pred             eEEEEEcCCCCEEEEeeC--CCceEEEEcCCCeeeEE-ecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCCCCeeE
Q 021925           13 LTYLKYNKDGDLLFSCAK--DHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~--dg~v~iw~~~~~~~~~~-~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      ...++++|||++|+++..  ++.|.++| .+++.+.+ +.. .+.   +.+.|++ +.+++.+.||.+.++|. +++...
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~  200 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG  200 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence            457899999999998874  47899999 99998877 652 222   4455654 45667778999999999 887764


Q ss_pred             EEee------CCCc-eEEEEecCCce-EEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe----------ccCCCee
Q 021925           89 TFNF------DSPA-RSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLILK----------GPQGRIN  150 (305)
Q Consensus        89 ~~~~------~~~v-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~  150 (305)
                      ....      ..++ ....+.+++.. ++....+      .+...+....    .......+.          .......
T Consensus       201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~------~v~vid~~~~----~~~v~~~~~~~~~~~~~~~~~p~g~~  270 (373)
T 2mad_H          201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG------KILQADISAA----GATNKAPIDALSGGRKADTWRPGGWQ  270 (373)
T ss_pred             EEeccccccCCcceeecceeEecCCEEEEEcCCc------eEEEEeccCC----cceEeeeeeecCCcccccceecCceE
Confidence            3321      1111 12344554433 3322211      1222121100    000001110          0122234


Q ss_pred             EEEEcCCCCEEEEeeC----------CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEe-CCCeEEEE
Q 021925          151 RAVWGPLNRTIISAGE----------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS-LDKSAKLW  218 (305)
Q Consensus       151 ~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iw  218 (305)
                      .+.++|+++.++.+..          .+.|.++|..+++.+..+.    .......++|+|||+ .++++. .++.|.++
T Consensus       271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~----~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~Vi  346 (373)
T 2mad_H          271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS----LGHDVDAISVAQDGGPDLYALSAGTEVLHIY  346 (373)
T ss_pred             eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE----CCCCcCeEEECCCCCeEEEEEcCCCCeEEEE
Confidence            4788999988777653          3579999999999998885    334678999999999 777777 48999999


Q ss_pred             EcCCceEEEEE
Q 021925          219 DARTLELIKTY  229 (305)
Q Consensus       219 d~~~~~~~~~~  229 (305)
                      |+.+++.+..+
T Consensus       347 D~~t~~vv~~i  357 (373)
T 2mad_H          347 DAGAGDQDQST  357 (373)
T ss_pred             ECCCCCEEeee
Confidence            99999999884

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.38  E-value=1.5e-09  Score=88.01  Aligned_cols=225  Identities=11%  Similarity=0.038  Sum_probs=148.3

Q ss_pred             CCCCEEEE-eeCCCceEEEEcCCC----eeeEEec------C-CCcceEEEEEcCCCcEEEEEeCC------CcEEEEec
Q 021925           20 KDGDLLFS-CAKDHTPTVWFADNG----ERLGTYR------G-HNGAVWCCDVSRDSMTLITGSAD------QTAKLWNV   81 (305)
Q Consensus        20 ~~~~~l~s-~~~dg~v~iw~~~~~----~~~~~~~------~-~~~~v~~i~~~~~~~~l~s~~~d------g~v~vwd~   81 (305)
                      +++++|+. +..++.|.++|+.+.    +..++++      . -...-..+...|+| .++++..+      |.|.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77877665 556789999998755    6666663      1 12245678889999 77776655      78999999


Q ss_pred             CCCCeeEEEeeC----CCceEEEEecCCceEEEeCC--------cce------eeeeeEEEEEeecccCCCCCceEEEEe
Q 021925           82 ETGAQLFTFNFD----SPARSVDFAVGDKLAVITTD--------PFM------ELNSAIHVKRIARDPADQGGESVLILK  143 (305)
Q Consensus        82 ~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (305)
                      ++++.+.++...    .....+-|+|+++.++++.=        +..      .....+.++++..      .+.+..+.
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~------~k~~~tI~  245 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK------RKRIHSLT  245 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT------TEEEEEEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC------CcEeeEEe
Confidence            999999988733    22445888999998877730        000      2245566666542      23444444


Q ss_pred             cc-C-CCeeEEEE--cCCCCEEEEeeC------CCcEEEEeCCCCcE--eeee--ccc--cC-----------CccceEE
Q 021925          144 GP-Q-GRINRAVW--GPLNRTIISAGE------DAIVRIWDTETGKL--LKES--DKE--TG-----------HKKTITS  196 (305)
Q Consensus       144 ~~-~-~~i~~~~~--~~~~~~l~~~~~------dg~i~iwd~~~~~~--~~~~--~~~--~~-----------~~~~v~~  196 (305)
                      .. . .....+.|  +|++++++.+++      +++|.+|....++.  .+.+  ...  .+           .......
T Consensus       246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence            32 1 23344555  999998887774      56887766554321  1111  100  00           0245778


Q ss_pred             EEEcCCCCEEEEEeC-CCeEEEEEcC---CceEEEEEeeCC---------------CeeEEEecCCCCcEEEee
Q 021925          197 LAKAADGSHFLTGSL-DKSAKLWDAR---TLELIKTYVTER---------------PVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       197 ~~~~~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~---------------~v~~~~~~~~~~~l~~~~  251 (305)
                      +.+++||++|.++.. .+.|.++|+.   +.+.+..+..++               ....++++|||++|+++.
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999999999887775 7899999986   345666665431               368999999999999987

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.37  E-value=1.1e-09  Score=83.37  Aligned_cols=193  Identities=10%  Similarity=0.019  Sum_probs=132.0

Q ss_pred             eEEEEEcCCCCEEEEeeC--CCceEEEEcCCCeeeEEecCCCc-ceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeE
Q 021925           13 LTYLKYNKDGDLLFSCAK--DHTPTVWFADNGERLGTYRGHNG-AVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      ...+.|++++.+.++.+.  ++.|.+.|..+++.+.++.-... ....+++.  ++.| ++.-.++.+.++|..+.+.+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence            579999998755555443  57999999999999888753221 22345554  4344 444558999999999988877


Q ss_pred             EEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC
Q 021925           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (305)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  168 (305)
                      ++..+ .                                                 ..    ....+++++.++.+..++
T Consensus       101 ~i~~g-~-------------------------------------------------~~----g~glt~Dg~~l~vs~gs~  126 (266)
T 2iwa_A          101 NFTHQ-M-------------------------------------------------KD----GWGLATDGKILYGSDGTS  126 (266)
T ss_dssp             EEECC-S-------------------------------------------------SS----CCEEEECSSSEEEECSSS
T ss_pred             EEECC-C-------------------------------------------------CC----eEEEEECCCEEEEECCCC
Confidence            66422 0                                                 00    012344666666666788


Q ss_pred             cEEEEeCCCCcEeeeeccccC--CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC--------------
Q 021925          169 IVRIWDTETGKLLKESDKETG--HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------------  232 (305)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------  232 (305)
                      .|.++|..+.+.+..+.....  .-..++.+.|. +|...+....++.|.+.|..+++.+..+...              
T Consensus       127 ~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~  205 (266)
T 2iwa_A          127 ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDI  205 (266)
T ss_dssp             EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTC
T ss_pred             eEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccccccc
Confidence            999999999988888763211  11246788888 6765555556889999999999999988732              


Q ss_pred             CCeeEEEecCCCCcEEEee-CCcEEEEEEee
Q 021925          233 RPVNAVTMSPLLDHVCIGE-PQTIKFMLLVY  262 (305)
Q Consensus       233 ~~v~~~~~~~~~~~l~~~~-~~~~~~~~~~~  262 (305)
                      ...+.++++|+++.+++++ ..+....+.+.
T Consensus       206 ~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          206 DVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            2458999999988766654 44544444443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.36  E-value=1.7e-09  Score=86.27  Aligned_cols=190  Identities=14%  Similarity=0.010  Sum_probs=119.4

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC----CCcceEEEEEcCCCcEEEEEeC------CCcEEEE
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG----HNGAVWCCDVSRDSMTLITGSA------DQTAKLW   79 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~s~~~------dg~v~vw   79 (305)
                      ...+.+++++|+|+++++. .+ .|.+||..+++.......    ....+.+++++|+|+++++...      .+.|..+
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~  166 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  166 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence            4578999999999877754 44 499999888775433221    1246899999999987665432      2345555


Q ss_pred             ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeec-cc-CCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR-DP-ADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        80 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      +  +++.............++|+|+++.++++...    ...+..++... .. .....+....+......+..++++++
T Consensus       167 ~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~----~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~  240 (326)
T 2ghs_A          167 A--KGKVTKLFADISIPNSICFSPDGTTGYFVDTK----VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE  240 (326)
T ss_dssp             E--TTEEEEEEEEESSEEEEEECTTSCEEEEEETT----TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred             e--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECC----CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC
Confidence            5  44433333333456789999999876655321    12333333320 00 00111112222233455678999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc-CCCCEEEEEeC
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA-ADGSHFLTGSL  211 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~  211 (305)
                      |++.++...++.|.+||. +++.+..+.   .+...+++++|+ ++++.|+.++.
T Consensus       241 G~lwva~~~~~~v~~~d~-~g~~~~~i~---~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          241 GHIWNARWGEGAVDRYDT-DGNHIARYE---VPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             SCEEEEEETTTEEEEECT-TCCEEEEEE---CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCEEEEEeCCCEEEEECC-CCCEEEEEE---CCCCCcEEEEEecCCCCEEEEEec
Confidence            987777767789999998 566666665   345579999998 88877655543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.32  E-value=1.8e-09  Score=88.78  Aligned_cols=192  Identities=13%  Similarity=0.100  Sum_probs=123.8

Q ss_pred             EEEcCCCCEEEEeeCCC--ceEEEEcCCCeeeEEe----cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925           16 LKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTY----RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (305)
Q Consensus        16 ~~~~~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~   89 (305)
                      ++|+|+++.|+++..++  .|.+++..++.....+    ......+.+++++|++..|+.+..++.|..||..++.....
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            89999999988888766  7888887765544444    22456678999999544565577788999999987764322


Q ss_pred             ----EeeC-CC-ce-EEEEecC-CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc---------------C
Q 021925           90 ----FNFD-SP-AR-SVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP---------------Q  146 (305)
Q Consensus        90 ----~~~~-~~-v~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~  146 (305)
                          .... .. .. .++++|+ +.+.++....     ..+..++.  .     +. ...+.++               -
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~-----~~I~~~~~--~-----g~-~~~~~g~~~~~g~~dg~~~~~~~  322 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL-----SSVYKITP--D-----GE-CEWFCGSATQKTVQDGLREEALF  322 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTT-----TEEEEECT--T-----CC-EEEEEECTTCCSCBCEEGGGCBC
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCC-----CEEEEEec--C-----CC-EEEEEeCCCCCCcCCCcccccEe
Confidence                1111 11 23 8999995 4444443321     11111111  0     11 1122221               2


Q ss_pred             CCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCcEeeeeccc--c---------CCccceEEEEEcCCCCEEEEEeCCCe
Q 021925          147 GRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKE--T---------GHKKTITSLAKAADGSHFLTGSLDKS  214 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~--~---------~~~~~v~~~~~~~~~~~l~~~~~dg~  214 (305)
                      .....++++|+|+++++-. .++.|+.||+.++.........  .         ..-.....++++++|.++++-..+++
T Consensus       323 ~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~  402 (409)
T 3hrp_A          323 AQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA  402 (409)
T ss_dssp             SSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred             CCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence            4578899999999777777 7899999998777643222110  0         01245889999999888888888888


Q ss_pred             EEEEEc
Q 021925          215 AKLWDA  220 (305)
Q Consensus       215 i~iwd~  220 (305)
                      |+.+++
T Consensus       403 Ir~i~~  408 (409)
T 3hrp_A          403 IRKYAV  408 (409)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            988775

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.29  E-value=3.4e-09  Score=79.86  Aligned_cols=186  Identities=13%  Similarity=0.127  Sum_probs=128.2

Q ss_pred             ccccc--eEEEEEcCCCCEEEEeeCCC--ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEE-eCCCcEEEEecC
Q 021925            8 GHERP--LTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVE   82 (305)
Q Consensus         8 ~h~~~--v~~~~~~~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~v~vwd~~   82 (305)
                      .|...  ...+.|+ ++.+..+.+.+|  .|+++|+++++.+.++.-.. ........++++.|... -.++.+.++|.+
T Consensus        38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence            45444  4788998 677777777766  89999999999988886433 33332223334455444 458999999999


Q ss_pred             CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      +.+.+.++..+..-                                                       ...+++++.|+
T Consensus       116 t~~~~~ti~~~~eG-------------------------------------------------------~glt~dg~~L~  140 (262)
T 3nol_A          116 NLRQVRSFNYDGEG-------------------------------------------------------WGLTHNDQYLI  140 (262)
T ss_dssp             TCCEEEEEECSSCC-------------------------------------------------------CCEEECSSCEE
T ss_pred             cCcEEEEEECCCCc-------------------------------------------------------eEEecCCCEEE
Confidence            99988877632110                                                       11224466666


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeecccc-CCc-cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC--------
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKET-GHK-KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------  232 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------  232 (305)
                      .+..++.|.++|..+.+.+..+.... +.. ..++.+.+. +|+..+..-.++.|.+.|.++++.+..+...        
T Consensus       141 ~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~  219 (262)
T 3nol_A          141 MSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP  219 (262)
T ss_dssp             ECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS
T ss_pred             EECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc
Confidence            66667889999999999888876421 111 335567776 6765555556889999999999999988732        


Q ss_pred             -----CCeeEEEecCCCCcEEEee
Q 021925          233 -----RPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       233 -----~~v~~~~~~~~~~~l~~~~  251 (305)
                           .-.+.+|++|+++.|++++
T Consensus       220 ~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          220 LPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ccCcCCceEEEEEcCCCCEEEEEC
Confidence                 2458899999887766654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.28  E-value=1.1e-09  Score=96.01  Aligned_cols=220  Identities=14%  Similarity=0.105  Sum_probs=128.6

Q ss_pred             EEEEEcCCCCEEEEeeCCCc-------------------eEEEEcCCCeeeEEecC--CC-------cceEEEEEcCCCc
Q 021925           14 TYLKYNKDGDLLFSCAKDHT-------------------PTVWFADNGERLGTYRG--HN-------GAVWCCDVSRDSM   65 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~~dg~-------------------v~iw~~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~   65 (305)
                      ..++++|++..++.++.++.                   |..+|..+|+.+..++.  |.       .+........+|+
T Consensus       238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            36788998889998887763                   99999999999887764  22       1222222223564


Q ss_pred             ---EEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925           66 ---TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (305)
Q Consensus        66 ---~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (305)
                         .++.++.+|.++++|.++++.+...........-.+.+....-+.... . ..          ..   ...+.....
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~-~-~~----------~~---~~~~~~~~~  382 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEE-N-AA----------YW---KNGKRNLVT  382 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHH-H-HC----------TT---TSSSCEEES
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchh-h-cc----------cc---CCCCeeEeC
Confidence               788999999999999999999876653331111111100000000000 0 00          00   000000000


Q ss_pred             eccC--CCeeEEEEcCCCCEEEEee---------------------------------------------CCCcEEEEeC
Q 021925          143 KGPQ--GRINRAVWGPLNRTIISAG---------------------------------------------EDAIVRIWDT  175 (305)
Q Consensus       143 ~~~~--~~i~~~~~~~~~~~l~~~~---------------------------------------------~dg~i~iwd~  175 (305)
                      .+..  ..-..++++|+..++++..                                             .+|.|+.||+
T Consensus       383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~  462 (689)
T 1yiq_A          383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP  462 (689)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred             CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence            0000  0011233444433333321                                             1478999999


Q ss_pred             CCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCe--eEEEecCCCCc-EEEeeC
Q 021925          176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV--NAVTMSPLLDH-VCIGEP  252 (305)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~-l~~~~~  252 (305)
                      .+++.+.....    ..+...-.+...+.+++.++.||.++.||.++|+.+.++.....+  .-+.+..+|+. +++.++
T Consensus       463 ~tG~~~W~~~~----~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          463 VKQQAAWEVPY----VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             TTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCCCeEeEccC----CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence            99999888762    222333345556778999999999999999999999999844333  34677788874 444444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.28  E-value=1.3e-09  Score=86.08  Aligned_cols=201  Identities=11%  Similarity=-0.038  Sum_probs=123.4

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCC----CcceEEEEEcCCCcEEEE----EeC-----
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH----NGAVWCCDVSRDSMTLIT----GSA-----   72 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~s----~~~-----   72 (305)
                      +..+...+..++++++|+++++...++.|.+|+.+ ++........    ...+.++++.|+|+..++    |..     
T Consensus        81 ~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~  159 (305)
T 3dr2_A           81 LLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQG  159 (305)
T ss_dssp             EEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGS
T ss_pred             EeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccc
Confidence            33455678999999999977766666789999875 5532222111    134678999999988776    332     


Q ss_pred             --------CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcce-eeeeeEEEEEeecccCCCCCceEEEEe
Q 021925           73 --------DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM-ELNSAIHVKRIARDPADQGGESVLILK  143 (305)
Q Consensus        73 --------dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (305)
                              .+.|..+|..+++..... .......++|+|+++.++++..... .....+..+++....   .........
T Consensus       160 ~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~~~~~  235 (305)
T 3dr2_A          160 CPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRRHFAS  235 (305)
T ss_dssp             CCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE---EEEEEEEEC
T ss_pred             cccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCeEEEE
Confidence                    256777887667654443 4456678999999987766543210 001223333332110   000011111


Q ss_pred             ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925          144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (305)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  219 (305)
                      ...+....++++++|++ .+++.+ .|.+||. .++.+..+..   . ..+.+++|+++++.|..++.++ +..++
T Consensus       236 ~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~---~-~~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          236 VPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPT---P-GTASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             CSSSCCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEEC---S-SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             CCCCCCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEEC---C-CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            22345567899999994 444444 4999998 4667766652   2 2588899999998888887664 43333

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.27  E-value=4.4e-08  Score=75.69  Aligned_cols=221  Identities=10%  Similarity=0.018  Sum_probs=134.6

Q ss_pred             cceEEEEEcCCCCEEEE-eeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCCCCeeE
Q 021925           11 RPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~   88 (305)
                      ..+..++|++++..|+. -..++.|..++...+.....+.........+++++++..|+ +-...+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            45678999996655554 44578999999876554333333335679999999655554 44557889999987543322


Q ss_pred             EEeeC-CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCCeeEEEEcCCCCEEEEee-
Q 021925           89 TFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTIISAG-  165 (305)
Q Consensus        89 ~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-  165 (305)
                      ..... .....+++.|++..++.+....    ....+......     +.....+ .........++++|+++.|+.+. 
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~d-----g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~  186 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMD-----GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCS----SSCEEEEEETT-----SCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCC----CCcEEEEEecC-----CCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC
Confidence            22222 4678899999655554443210    01111111111     1111112 22334678899999887666554 


Q ss_pred             CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC--CeeEEEecCC
Q 021925          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSPL  243 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~  243 (305)
                      ..+.|..+|+..........    .......++.. ++..+++....+.|..+|..+++.+..+....  ....+++.|+
T Consensus       187 ~~~~I~~~~~~g~~~~~~~~----~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          187 GTHRAECLNPAQPGRRKVLE----GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             TTTEEEEEETTEEEEEEEEE----CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             CCCEEEEEecCCCceEEEec----CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            46899999997544333222    12234566654 34444444456899999999999988887332  4778888887


Q ss_pred             CC
Q 021925          244 LD  245 (305)
Q Consensus       244 ~~  245 (305)
                      +-
T Consensus       262 ~~  263 (267)
T 1npe_A          262 QC  263 (267)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.27  E-value=3.5e-09  Score=79.76  Aligned_cols=179  Identities=9%  Similarity=0.046  Sum_probs=125.6

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcce--EEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      ...+.|+ ++.+..+.+.+|.|+++|+++++.+.++ -. ...  ..+++..+ +..+..-.++.+.++|.++.+.+.++
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEE
Confidence            4688887 3567777788899999999999988877 22 222  33555432 34444556899999999999988877


Q ss_pred             eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcE
Q 021925           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (305)
Q Consensus        91 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  170 (305)
                      .....-                                                     ..++  ++++.|+.+..+++|
T Consensus       133 ~~~~eG-----------------------------------------------------wGLt--~Dg~~L~vSdGs~~l  157 (268)
T 3nok_A          133 RYSGEG-----------------------------------------------------WGLC--YWNGKLVRSDGGTML  157 (268)
T ss_dssp             ECSSCC-----------------------------------------------------CCEE--EETTEEEEECSSSEE
T ss_pred             eCCCce-----------------------------------------------------eEEe--cCCCEEEEECCCCEE
Confidence            522110                                                     1122  346667766678999


Q ss_pred             EEEeCCCCcEeeeeccccCC--ccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC--------------CC
Q 021925          171 RIWDTETGKLLKESDKETGH--KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------------RP  234 (305)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~~  234 (305)
                      .++|..+.+.+..+......  -..++.+.|. +|+..+..-.++.|.+.|.++++.+..+...              .-
T Consensus       158 ~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v  236 (268)
T 3nok_A          158 TFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV  236 (268)
T ss_dssp             EEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC
T ss_pred             EEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc
Confidence            99999999988887643211  1245677777 7765555556889999999999999988722              24


Q ss_pred             eeEEEecCCCCcEEEee
Q 021925          235 VNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       235 v~~~~~~~~~~~l~~~~  251 (305)
                      .+.+|++|+++.|++.+
T Consensus       237 lNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          237 LNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEEECTTTCCEEEEE
T ss_pred             eEEEEEcCCCCEEEEeC
Confidence            58899999877666653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.25  E-value=6.3e-10  Score=97.86  Aligned_cols=196  Identities=15%  Similarity=0.050  Sum_probs=118.5

Q ss_pred             CCCcceEEEEEcCCCcEEEEE-----eCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcce--------
Q 021925           50 GHNGAVWCCDVSRDSMTLITG-----SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM--------  116 (305)
Q Consensus        50 ~~~~~v~~i~~~~~~~~l~s~-----~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------  116 (305)
                      +|...+..++|||||++|+-+     +.+..|++||+++++.+...........++|+ |++.++.+.....        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            355678999999999988743     23357999999999876543222224678899 9887777654321        


Q ss_pred             eeeeeEEEEEeecccCCCCCceEEEEec-cCCCeeEEEEcCCCCEEEEeeC----CCcEEEEeCCCCc-EeeeeccccCC
Q 021925          117 ELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGPLNRTIISAGE----DAIVRIWDTETGK-LLKESDKETGH  190 (305)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~  190 (305)
                      .....+..+.+...  ......+..... +......+.|+|+|++|+....    +..|+++|+.++. ....+.   .+
T Consensus       205 ~~~~~v~~~~lgt~--~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~---~~  279 (693)
T 3iuj_A          205 TDQHKVYFHRLGTA--QEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ---GD  279 (693)
T ss_dssp             CCCCEEEEEETTSC--GGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE---CS
T ss_pred             CCCcEEEEEECCCC--cccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe---CC
Confidence            11122333332211  111112222222 4455788999999998864432    3589999998763 333443   23


Q ss_pred             ccceEEEEEcCCCCEEE-EEeCC---CeEEEEEcCCceE--EEEEe-eCCCeeEEEecCCCCcEEEeeCCc
Q 021925          191 KKTITSLAKAADGSHFL-TGSLD---KSAKLWDARTLEL--IKTYV-TERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       191 ~~~v~~~~~~~~~~~l~-~~~~d---g~i~iwd~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      ....... ++++|..|+ ....+   +.|..+|+.++..  ...+. +...+.  .|+++++.|+....++
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~  347 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVD  347 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEET
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEEC
Confidence            3444443 556666554 44333   6799999987654  22333 444444  8999999888775544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=3e-09  Score=85.43  Aligned_cols=203  Identities=8%  Similarity=-0.049  Sum_probs=131.1

Q ss_pred             ccccceEEEEEcCCCCEEEEeeC-----CCceEEEEcCCCeeeEEecCC------CcceEEEEEcCCCcE-EEEEe---C
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAK-----DHTPTVWFADNGERLGTYRGH------NGAVWCCDVSRDSMT-LITGS---A   72 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~-l~s~~---~   72 (305)
                      +|...+..++++++|+++++-..     ++.|.+||+.+++.+..+...      ...+..+++++++.. +++..   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            45678999999999986665433     578999999999877766532      235689999986444 45544   5


Q ss_pred             CCcEEEEecCCCCeeEEEee------------------------------CCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925           73 DQTAKLWNVETGAQLFTFNF------------------------------DSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (305)
Q Consensus        73 dg~v~vwd~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (305)
                      ++.|.+||+.+++....+..                              ...+..++++|+++.++.+....      .
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~------~  217 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS------T  217 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC------S
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC------C
Confidence            78999999988776554321                              01246788999987776654321      1


Q ss_pred             EEEEeecccCCC-C---Cce--EEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEE
Q 021925          123 HVKRIARDPADQ-G---GES--VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS  196 (305)
Q Consensus       123 ~~~~~~~~~~~~-~---~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  196 (305)
                      .++.+....... .   .+.  .....++.+....++++++|+++++...++.|.+||..+++...... . .....+.+
T Consensus       218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~-~~~~~p~~  295 (343)
T 2qe8_A          218 SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-D-EKLSWTDS  295 (343)
T ss_dssp             EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-C-GGGSCEEE
T ss_pred             eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-C-CceecCCe
Confidence            233332110000 0   000  00112344466789999999988888889999999985565433222 1 13456899


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEE
Q 021925          197 LAKAADGSHFLTGSLDKSAKLW  218 (305)
Q Consensus       197 ~~~~~~~~~l~~~~~dg~i~iw  218 (305)
                      +++.++++++++.+..+.+.+|
T Consensus       296 va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          296 FNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             EEECTTSCEEEEECCGGGSGGG
T ss_pred             eEECCCCcEEEEeCcccccccc
Confidence            9999999888777755544433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.23  E-value=1.6e-09  Score=94.77  Aligned_cols=233  Identities=13%  Similarity=0.070  Sum_probs=149.0

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeeeEEecCC-C----cceEE-EEEcCCCcEEEEEeC------CCcEEEEecCCCCeeEE
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGH-N----GAVWC-CDVSRDSMTLITGSA------DQTAKLWNVETGAQLFT   89 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~----~~v~~-i~~~~~~~~l~s~~~------dg~v~vwd~~~~~~~~~   89 (305)
                      +..|+.++.|+.|..+|..+|+.+.++..+ .    ..+.+ ... .++ .++.++.      +|.|..+|.++++.+..
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKG-KVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECC-EEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            567888889999999999999998887754 1    11211 111 134 5555543      69999999999999988


Q ss_pred             EeeCCCc---------------------------------eEEEEecCCceEEEeCCcceeeee------------eEEE
Q 021925           90 FNFDSPA---------------------------------RSVDFAVGDKLAVITTDPFMELNS------------AIHV  124 (305)
Q Consensus        90 ~~~~~~v---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~  124 (305)
                      +......                                 ..+++.+++..+++..........            ...+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv  285 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI  285 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence            8732211                                 256788887777776543211000            0011


Q ss_pred             EEeecccCCCCCceEEEEec--cC-------CCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCCcEeeeeccccC---
Q 021925          125 KRIARDPADQGGESVLILKG--PQ-------GRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLLKESDKETG---  189 (305)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---  189 (305)
                      .-+.    ...++..-.++.  |.       ....-+....+|   +.++.++.+|.++++|.++++.+........   
T Consensus       286 ~AlD----~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~  361 (677)
T 1kb0_A          286 VALD----PDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA  361 (677)
T ss_dssp             EEEC----TTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             EEEE----CCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence            1111    122333333332  21       112222333366   6788999999999999999998876542110   


Q ss_pred             -----Cccce------------------------EEEEEcCCCCEEEEEeC-----------------------------
Q 021925          190 -----HKKTI------------------------TSLAKAADGSHFLTGSL-----------------------------  211 (305)
Q Consensus       190 -----~~~~v------------------------~~~~~~~~~~~l~~~~~-----------------------------  211 (305)
                           ...++                        ..++++|++.++++...                             
T Consensus       362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  441 (677)
T 1kb0_A          362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN  441 (677)
T ss_dssp             EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred             cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence                 00001                        14688898888877543                             


Q ss_pred             --------------CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925          212 --------------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       212 --------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                                    .|.|..||+.+++.+.++.+..++....+...+..+++++.++....+.
T Consensus       442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          442 TAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             CCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             cccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence                          2789999999999999988877777777888888899888888744333

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.22  E-value=6.1e-09  Score=84.56  Aligned_cols=194  Identities=11%  Similarity=0.060  Sum_probs=125.3

Q ss_pred             ceEEEEEcCCCCEEEEeeCC------CceEEEEcCCCeeeEEecCCCc---ceEEEEEcCCCcEEEEEe-----------
Q 021925           12 PLTYLKYNKDGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGS-----------   71 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~d------g~v~iw~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~l~s~~-----------   71 (305)
                      .-..+...|+| .++++..+      |.|.+.|.++++.+.++....+   --..+.|+|+++.+++..           
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~  217 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL  217 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence            34566788999 77766555      7899999999999988863222   234588899999888874           


Q ss_pred             --------CCCcEEEEecCCCCeeEEEeeC---CCceEEEE--ecCCceEEEeCCc-ceeeeeeEEEEEeecccCCCCCc
Q 021925           72 --------ADQTAKLWNVETGAQLFTFNFD---SPARSVDF--AVGDKLAVITTDP-FMELNSAIHVKRIARDPADQGGE  137 (305)
Q Consensus        72 --------~dg~v~vwd~~~~~~~~~~~~~---~~v~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  137 (305)
                              .+.+|.+||+.+++.+.++...   .....+.|  +|+++.++++..- ...+.+.+..+....    ...+
T Consensus       218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~----g~~~  293 (462)
T 2ece_A          218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED----GKWN  293 (462)
T ss_dssp             CTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET----TEEE
T ss_pred             chhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC----Ccee
Confidence                    3689999999998888888764   24455655  9999888876530 000111222111110    0000


Q ss_pred             eEEEE--ec----------------cCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCC---CcEeeeecccc-------
Q 021925          138 SVLIL--KG----------------PQGRINRAVWGPLNRTIISAGE-DAIVRIWDTET---GKLLKESDKET-------  188 (305)
Q Consensus       138 ~~~~~--~~----------------~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~---~~~~~~~~~~~-------  188 (305)
                      ..+.+  ..                -......+.+|||+++|.++.. .+.|.+||+..   .+.+..+....       
T Consensus       294 ~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~  373 (462)
T 2ece_A          294 AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADH  373 (462)
T ss_dssp             EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCC
T ss_pred             EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccc
Confidence            00000  00                0245788999999999998876 68999999863   34444443210       


Q ss_pred             ----CCccceEEEEEcCCCCEEEEEe
Q 021925          189 ----GHKKTITSLAKAADGSHFLTGS  210 (305)
Q Consensus       189 ----~~~~~v~~~~~~~~~~~l~~~~  210 (305)
                          ........++++|||++|+++.
T Consensus       374 ~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          374 PAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             cccccCCCCCCEEEEcCCCCEEEEEc
Confidence                0011357899999999999887

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.19  E-value=3.5e-08  Score=73.70  Aligned_cols=197  Identities=11%  Similarity=0.063  Sum_probs=131.2

Q ss_pred             cccc--ceEEEEEcCCCCEEEEeeCCC--ceEEEEcCCCeeeEEecCCCcc-eEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            8 GHER--PLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNGA-VWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         8 ~h~~--~v~~~~~~~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .|..  -...+.|++ +.+..+.+.+|  .|+.+|+.+++.+.++.-.... -..+++. +++..+..-.++.+.++|.+
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence            4543  366899987 55666666654  8999999999998887643321 1334443 23344445568999999999


Q ss_pred             CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      +.+.+.++..+..-                                                     ..++  ++++.|+
T Consensus        94 tl~~~~ti~~~~~G-----------------------------------------------------wglt--~dg~~L~  118 (243)
T 3mbr_X           94 TLTPRARFRYPGEG-----------------------------------------------------WALT--SDDSHLY  118 (243)
T ss_dssp             TTEEEEEEECSSCC-----------------------------------------------------CEEE--ECSSCEE
T ss_pred             cCcEEEEEeCCCCc-----------------------------------------------------eEEe--eCCCEEE
Confidence            99888877632110                                                     1222  3455566


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccC--CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC--------
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETG--HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------  232 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------  232 (305)
                      .+..++.|.++|..+.+.+..+.....  .-..++.+.+. +|+..+..-.+..|.+.|.++++.+..+...        
T Consensus       119 vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~  197 (243)
T 3mbr_X          119 MSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA  197 (243)
T ss_dssp             EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS
T ss_pred             EECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc
Confidence            666688999999999998888764211  11345667765 6665555556889999999999999988721        


Q ss_pred             ------CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          233 ------RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       233 ------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                            .-.+.++++|+++.|++.+          +.|+..++..+
T Consensus       198 ~~~~~~~vlNGIA~d~~~~~lfVTG----------K~wp~~~~v~~  233 (243)
T 3mbr_X          198 LTDSTNDVLNGIAFDAEHDRLFVTG----------KRWPMLYEIRL  233 (243)
T ss_dssp             CCCTTSSCEEEEEEETTTTEEEEEE----------TTCSEEEEEEE
T ss_pred             ccCCcCCceEEEEEcCCCCEEEEEC----------CCCCcEEEEEE
Confidence                  2357899999877666553          45555555444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.15  E-value=4.1e-08  Score=86.08  Aligned_cols=239  Identities=15%  Similarity=0.100  Sum_probs=147.2

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeeeEEecCC--CcceEEEEEcC---CCcEEEEEe------CCCcEEEEecCCCCeeEEE
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCDVSR---DSMTLITGS------ADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~v~~i~~~~---~~~~l~s~~------~dg~v~vwd~~~~~~~~~~   90 (305)
                      +..|+.++.|+.|..+|..+|+.+.++...  ......+..+|   ++. ++.++      .+|.|..||.++++.+..+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            457888889999999999999988776642  11111111222   454 44443      3689999999999999887


Q ss_pred             eeC--CC------------------------------ceEEEEecCCceEEEeCCcceee--------------eeeEEE
Q 021925           91 NFD--SP------------------------------ARSVDFAVGDKLAVITTDPFMEL--------------NSAIHV  124 (305)
Q Consensus        91 ~~~--~~------------------------------v~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~  124 (305)
                      ...  .+                              -..+++.|+...++++.......              ...+..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            621  00                              12577888777777766532100              001222


Q ss_pred             EEeecccCCCCCceEEEEec--cC-------CCeeEEEEcCCCC---EEEEeeCCCcEEEEeCCCCcEeeeecccc----
Q 021925          125 KRIARDPADQGGESVLILKG--PQ-------GRINRAVWGPLNR---TIISAGEDAIVRIWDTETGKLLKESDKET----  188 (305)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----  188 (305)
                      .+.      ..++.+-.++.  |.       ..+.......+|+   .++.++.+|.++++|.++++.+.......    
T Consensus       280 lD~------~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  353 (689)
T 1yiq_A          280 VNA------DTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT  353 (689)
T ss_dssp             EET------TTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             EEc------cCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence            222      23344433332  21       1111112222454   78899999999999999999874432110    


Q ss_pred             ---------------------CCcc-----------ceEEEEEcCCCCEEEEEeC-------------------------
Q 021925          189 ---------------------GHKK-----------TITSLAKAADGSHFLTGSL-------------------------  211 (305)
Q Consensus       189 ---------------------~~~~-----------~v~~~~~~~~~~~l~~~~~-------------------------  211 (305)
                                           ....           .-..++++|+..++++...                         
T Consensus       354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g  433 (689)
T 1yiq_A          354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG  433 (689)
T ss_dssp             EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred             cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence                                 0000           0112678888777776532                         


Q ss_pred             --------------------CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925          212 --------------------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       212 --------------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
                                          +|.|+.||+.+++.+.++....+.....+...+.++++|+.++.     ++.++......
T Consensus       434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~-----l~a~D~~tG~~  508 (689)
T 1yiq_A          434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGR-----VIAYAADTGEK  508 (689)
T ss_dssp             SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE-----EEEEETTTCCE
T ss_pred             ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCc-----EEEEECCCCcc
Confidence                                37899999999999999887776666677788889999988887     44444444333


Q ss_pred             h
Q 021925          272 F  272 (305)
Q Consensus       272 ~  272 (305)
                      +
T Consensus       509 l  509 (689)
T 1yiq_A          509 L  509 (689)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.13  E-value=6.7e-09  Score=90.82  Aligned_cols=214  Identities=14%  Similarity=0.128  Sum_probs=129.7

Q ss_pred             CCceEEEEcCCCeeeEEecCCCcc--------------------------------eEEEEEcCCCcEEEEEeCCC----
Q 021925           31 DHTPTVWFADNGERLGTYRGHNGA--------------------------------VWCCDVSRDSMTLITGSADQ----   74 (305)
Q Consensus        31 dg~v~iw~~~~~~~~~~~~~~~~~--------------------------------v~~i~~~~~~~~l~s~~~dg----   74 (305)
                      +|.|+.+|..+|+.+.++......                                ...++++|++..++.++.++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            689999999999988777532211                                12567888888888877664    


Q ss_pred             ---------------cEEEEecCCCCeeEEEeeCC----------CceEEEEecCC---ceEEEeCCcc-eeeee---eE
Q 021925           75 ---------------TAKLWNVETGAQLFTFNFDS----------PARSVDFAVGD---KLAVITTDPF-MELNS---AI  122 (305)
Q Consensus        75 ---------------~v~vwd~~~~~~~~~~~~~~----------~v~~~~~~~~~---~~~~~~~~~~-~~~~~---~~  122 (305)
                                     .|..+|.++++.+..++...          ....+....++   ..++.+.... +....   .-
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           49999999999998887321          12222333355   3444443211 11110   01


Q ss_pred             EEEEeecccCC------CCCceEE------------EEeccC--CCeeEEEEcCCCCEEEEeeC----------------
Q 021925          123 HVKRIARDPAD------QGGESVL------------ILKGPQ--GRINRAVWGPLNRTIISAGE----------------  166 (305)
Q Consensus       123 ~~~~~~~~~~~------~~~~~~~------------~~~~~~--~~i~~~~~~~~~~~l~~~~~----------------  166 (305)
                      .++........      ....++.            ...+..  ..-..++++|++.++++...                
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~  428 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence            11221111000      0011110            000000  01125788998888776543                


Q ss_pred             ---------------------------CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925          167 ---------------------------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (305)
Q Consensus       167 ---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  219 (305)
                                                 .|.|..||+.+++.+..+.    +..++....+...+..++.++.||.+++||
T Consensus       429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~----~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE----HVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE----ESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC----CCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence                                       2789999999999888875    333344444566777888999999999999


Q ss_pred             cCCceEEEEEeeCCCe--eEEEecCCCCcEE
Q 021925          220 ARTLELIKTYVTERPV--NAVTMSPLLDHVC  248 (305)
Q Consensus       220 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~  248 (305)
                      .++++.+.++.....+  .-+.+.++|+..+
T Consensus       505 ~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          505 AATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             TTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            9999999999844433  4456668886443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.13  E-value=4e-08  Score=82.57  Aligned_cols=219  Identities=8%  Similarity=-0.019  Sum_probs=145.2

Q ss_pred             EEEeeCCCceEEEEcCCCeeeEEec---------------------C------------C------CcceEEEEEcC---
Q 021925           25 LFSCAKDHTPTVWFADNGERLGTYR---------------------G------------H------NGAVWCCDVSR---   62 (305)
Q Consensus        25 l~s~~~dg~v~iw~~~~~~~~~~~~---------------------~------------~------~~~v~~i~~~~---   62 (305)
                      +.+|+..|.++|+-+.+++.++.+.                     .            +      .+.......|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            6678899999999999888777652                     0            0      12222344554   


Q ss_pred             --CCcEEEEEeC-CCcEEEEecCCCCeeEEEe--eCCCceEEEE-e-cCCceEEEeCCcce-------------eeeeeE
Q 021925           63 --DSMTLITGSA-DQTAKLWNVETGAQLFTFN--FDSPARSVDF-A-VGDKLAVITTDPFM-------------ELNSAI  122 (305)
Q Consensus        63 --~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~--~~~~v~~~~~-~-~~~~~~~~~~~~~~-------------~~~~~~  122 (305)
                        ||+++..... ++.|.+.|+.+.++...+.  ....+..+++ . |++.+++++.....             ...+.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence              7777766655 5679999999999888555  4456778887 4 89999888853211             112222


Q ss_pred             EEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC----------------------------------
Q 021925          123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA----------------------------------  168 (305)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------------------------------  168 (305)
                      ...+.      ...+....+.-.. ....++.+|+|+++++.+.+.                                  
T Consensus       178 tvID~------~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~  250 (595)
T 1fwx_A          178 TAVDA------DKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  250 (595)
T ss_dssp             EEEET------TTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             EEEEC------CCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence            22222      2234444443222 456688999999998887553                                  


Q ss_pred             ----cEEEEeCCC--CcE-eeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCce------------EEEE
Q 021925          169 ----IVRIWDTET--GKL-LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE------------LIKT  228 (305)
Q Consensus       169 ----~i~iwd~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~  228 (305)
                          .|.+.|.++  ++. +..+.    -.....++.++|||+++++++ .+.+|.++|+.+.+            .+.+
T Consensus       251 ~~i~~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          251 QELNGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             EEETTEEEEECSGGGCCSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             eEECcEEEEeCcccCCceeEEEEe----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence                377777776  433 34443    233556789999999876655 58899999999763            4556


Q ss_pred             EeeCCCeeEEEecCCCCcEEEe-eCCcE
Q 021925          229 YVTERPVNAVTMSPLLDHVCIG-EPQTI  255 (305)
Q Consensus       229 ~~~~~~v~~~~~~~~~~~l~~~-~~~~~  255 (305)
                      ...+.....++|+|+| .+.+. .-++.
T Consensus       327 v~vG~gP~h~aF~~dG-~aY~t~~ldsq  353 (595)
T 1fwx_A          327 PELGLGPLHTAFDGRG-NAYTSLFLDSQ  353 (595)
T ss_dssp             CBCCSCEEEEEECTTS-EEEEEETTTTE
T ss_pred             cCCCCCcceEEECCCC-eEEEEEecCCc
Confidence            6667778999999999 55554 44444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.10  E-value=4.2e-08  Score=78.08  Aligned_cols=210  Identities=13%  Similarity=0.094  Sum_probs=137.7

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEee-CCCceEEE
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVD  100 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~v~~~~  100 (305)
                      +..+..++.++.|..+|.. ++...........+.++...+++. +..++.++.|..+|.+ ++....... ...+.++.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            4467778888999999987 777666665555566777777775 6667788999999998 877776663 34556666


Q ss_pred             EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE
Q 021925          101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL  180 (305)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  180 (305)
                      ..+++.+.+.. .....++              ..++...........+.++...+++. +..++.++.|..+|. +++.
T Consensus       184 ~d~~g~l~v~t-~~l~~~d--------------~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~  246 (330)
T 3hxj_A          184 IGKDGTIYFGS-DKVYAIN--------------PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTE  246 (330)
T ss_dssp             ECTTCCEEEES-SSEEEEC--------------TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCE
T ss_pred             EcCCCEEEEEe-CEEEEEC--------------CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCE
Confidence            66777765554 2211111              11223333334445677888888775 556677888888884 5666


Q ss_pred             eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925          181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKF  257 (305)
Q Consensus       181 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~  257 (305)
                      +..+..   ....+..+...+++ .|..++.+|.+..+|. +++.+..+. ....+.++...++|+ |.+++.++...
T Consensus       247 ~~~~~~---~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~  318 (330)
T 3hxj_A          247 KWRFKT---GKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFY  318 (330)
T ss_dssp             EEEEEC---SSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEE
T ss_pred             eEEeeC---CCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEE
Confidence            655542   22233345555555 5777888889999996 677777766 445567777878876 55577777643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.10  E-value=5.3e-07  Score=71.61  Aligned_cols=238  Identities=9%  Similarity=-0.018  Sum_probs=138.8

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC--------------------CCcceEEEEEcC-
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG--------------------HNGAVWCCDVSR-   62 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--------------------~~~~v~~i~~~~-   62 (305)
                      +.+.+.-....+++|+++|+++.++..++.|..|+..+++.. .+..                    ....+.++++.+ 
T Consensus        12 i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~   90 (322)
T 2fp8_A           12 ILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ   90 (322)
T ss_dssp             EEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred             eecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCC
Confidence            345554455778999999987888888999999987765432 2210                    012578999997 


Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCeeEEEe------eCCCceEEEEec-CCceEEEeCCcceee----------eeeEEEE
Q 021925           63 DSMTLITGSADQTAKLWNVETGAQLFTFN------FDSPARSVDFAV-GDKLAVITTDPFMEL----------NSAIHVK  125 (305)
Q Consensus        63 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~------~~~~v~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~  125 (305)
                      +++ |+.+...+.|..+|..+++. ..+.      .......+++.+ ++.+.++........          .....++
T Consensus        91 ~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  168 (322)
T 2fp8_A           91 NNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLI  168 (322)
T ss_dssp             TTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred             CCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEE
Confidence            664 55554445588888765532 2221      113467889999 887766654311000          0011222


Q ss_pred             EeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCCCCc--EeeeeccccCCccceEEEEEcCC
Q 021925          126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAAD  202 (305)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~  202 (305)
                      .+..    .. .....+.........++++|+++.|+.+ ...+.|..+++....  ....+..   ... ...++++++
T Consensus       169 ~~d~----~~-~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~  239 (322)
T 2fp8_A          169 KYDP----ST-KETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNAD  239 (322)
T ss_dssp             EEET----TT-TEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTT
T ss_pred             EEeC----CC-CEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCC
Confidence            2211    01 1122222223445679999999866655 456899999987521  1112211   112 678999999


Q ss_pred             CCEEEEEeC----------CCeEEEEEcCCceEEEEEeeC-----CCeeEEEecCCCCcEEEeeCCcE
Q 021925          203 GSHFLTGSL----------DKSAKLWDARTLELIKTYVTE-----RPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       203 ~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      |++.++...          .+.|..+|. .++.+..+...     ..+.++++ .++++.++....+.
T Consensus       240 G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~  305 (322)
T 2fp8_A          240 GHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGS  305 (322)
T ss_dssp             SCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSE
T ss_pred             CCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCc
Confidence            987666544          467888886 47777777632     24566666 35544444334443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.02  E-value=4.8e-07  Score=73.50  Aligned_cols=215  Identities=9%  Similarity=0.076  Sum_probs=124.2

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeeeEEecCC---------CcceE-EEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGH---------NGAVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~---------~~~v~-~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   91 (305)
                      +..+++++.++.|..+|..+++.+.+....         ...+. .+..  ++..++.++.++.|..+|.++++.+....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            557888888999999999999988766542         12232 2222  34577888889999999999999998887


Q ss_pred             eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC-----eeEEEEcCCCCEEEEeeC
Q 021925           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR-----INRAVWGPLNRTIISAGE  166 (305)
Q Consensus        92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~  166 (305)
                      ....+.......++.+++...++.+      ...+.      ..++...........     .......  +..++.++.
T Consensus       131 ~~~~~~~~p~~~~~~v~v~~~~g~l------~~~d~------~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~  196 (376)
T 3q7m_A          131 VAGEALSRPVVSDGLVLIHTSNGQL------QALNE------ADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGD  196 (376)
T ss_dssp             CSSCCCSCCEEETTEEEEECTTSEE------EEEET------TTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCT
T ss_pred             CCCceEcCCEEECCEEEEEcCCCeE------EEEEC------CCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcC
Confidence            6554433222334544444333211      11111      111222222111100     0111122  456788888


Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCc----cceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEe
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHK----KTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM  240 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~  240 (305)
                      ++.+..+|..+++.+..........    ..+..+.-.|  .+..++.++.++.+..+|.++++.+....... ...+..
T Consensus       197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~  275 (376)
T 3q7m_A          197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV  275 (376)
T ss_dssp             TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE
Confidence            9999999999999877664211000    0000011111  24567888889999999999999887665332 333333


Q ss_pred             cCCCCcEEEeeCCcE
Q 021925          241 SPLLDHVCIGEPQTI  255 (305)
Q Consensus       241 ~~~~~~l~~~~~~~~  255 (305)
                        ++..+++++.++.
T Consensus       276 --~~~~l~~~~~~g~  288 (376)
T 3q7m_A          276 --DGNRIYLVDQNDR  288 (376)
T ss_dssp             --ETTEEEEEETTCC
T ss_pred             --ECCEEEEEcCCCe
Confidence              3455666655544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.01  E-value=1e-10  Score=94.90  Aligned_cols=172  Identities=12%  Similarity=0.064  Sum_probs=88.1

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925           63 DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (305)
Q Consensus        63 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (305)
                      ++..+++++.||.|..||.++++.+..+.. ..+.+..+..++..++.++.     ++.+..++...      ++.....
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~-----dg~l~a~d~~t------G~~~w~~   75 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPN-----DGSLYTLGSKN------NEGLTKL   75 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTT-----TCCEEEC-----------CCSEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCC-----CCEEEEEECCC------Cceeeee
Confidence            567899999999999999999999998887 56665556666666665432     22222222211      1111111


Q ss_pred             eccCC-Cee-EEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          143 KGPQG-RIN-RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       143 ~~~~~-~i~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      ..+.. .+. +.... .+..+++++.|+.|+.||.++++.+..+..   +.    ...++|++..+++++.|+.|+.||.
T Consensus        76 ~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~----~~~~~p~~~~v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           76 PFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF----ADSLSPSTSLLYLGRTEYTITMYDT  147 (369)
T ss_dssp             SCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCS
T ss_pred             eccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC----cccccccCCEEEEEecCCEEEEEEC
Confidence            11100 000 00111 345677888899999999999998877752   22    1345678888999999999999999


Q ss_pred             CCceEEEEEeeCCCeeEEEecCCC---CcEEEeeCCcE
Q 021925          221 RTLELIKTYVTERPVNAVTMSPLL---DHVCIGEPQTI  255 (305)
Q Consensus       221 ~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~  255 (305)
                      ++++.+..+.... ....+++++.   ..+++++.++.
T Consensus       148 ~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~  184 (369)
T 2hz6_A          148 KTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGL  184 (369)
T ss_dssp             SSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCE
T ss_pred             CCCCEEEeEeccc-ccCccccCCccccceEEEECCCCE
Confidence            9998877665221 2333444432   45666766665

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.01  E-value=7.6e-07  Score=72.32  Aligned_cols=210  Identities=9%  Similarity=0.059  Sum_probs=119.1

Q ss_pred             EEEEeeCCCceEEEEcCCCeeeEEecCCCcce-----EEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCC---
Q 021925           24 LLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-----WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP---   95 (305)
Q Consensus        24 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---   95 (305)
                      .++.++.++.|..+|..+++.+..........     ......  +..++.++.++.|..+|.++++.+.......+   
T Consensus       145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~  222 (376)
T 3q7m_A          145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS  222 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence            55666667777777777777666555322111     111121  34677788899999999999999887764321   


Q ss_pred             --------ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925           96 --------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (305)
Q Consensus        96 --------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  167 (305)
                              +.......++.+.+...++.      +...+.      ..++......  ......+..  ++..++.++.+
T Consensus       223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~------l~~~d~------~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~  286 (376)
T 3q7m_A          223 TEIDRLSDVDTTPVVVNGVVFALAYNGN------LTALDL------RSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQN  286 (376)
T ss_dssp             -------CCCCCCEEETTEEEEECTTSC------EEEEET------TTCCEEEEEC--CCCEEEEEE--ETTEEEEEETT
T ss_pred             cccccccccCCCcEEECCEEEEEecCcE------EEEEEC------CCCcEEeecc--CCCCCCceE--ECCEEEEEcCC
Confidence                    11111112333333332221      111111      1122222111  122233333  36678888889


Q ss_pred             CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee-CCCeeEEEecCCCCc
Q 021925          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDH  246 (305)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~  246 (305)
                      +.|..+|..+++.+......  ....+.....  .+..|+.++.+|.+..+|.++++.+..... ...+.+..... +..
T Consensus       287 g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~-~~~  361 (376)
T 3q7m_A          287 DRVMALTIDGGVTLWTQSDL--LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA-DGK  361 (376)
T ss_dssp             CCEEEEETTTCCEEEEECTT--TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE-TTE
T ss_pred             CeEEEEECCCCcEEEeeccc--CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE-CCE
Confidence            99999999999987766421  1112222222  245788899999999999999999888774 34443222222 446


Q ss_pred             EEEeeCCcEE
Q 021925          247 VCIGEPQTIK  256 (305)
Q Consensus       247 l~~~~~~~~~  256 (305)
                      |++++.++..
T Consensus       362 l~v~~~~G~l  371 (376)
T 3q7m_A          362 LLIQAKDGTV  371 (376)
T ss_dssp             EEEEBTTSCE
T ss_pred             EEEEeCCCEE
Confidence            7777777653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.95  E-value=3.2e-06  Score=66.59  Aligned_cols=224  Identities=9%  Similarity=-0.021  Sum_probs=130.5

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC--cEEEEecCCCCeeE
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLF   88 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~   88 (305)
                      .....++|+++|+++++-..++.|..||... +....+. .......+++.++++++++.....  .|..+|..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            4577899999999777766788999998764 4333333 345689999999998665543322  46667777776543


Q ss_pred             EEeeC--CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCc-eEEEE---------eccCCCeeEEEEcC
Q 021925           89 TFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE-SVLIL---------KGPQGRINRAVWGP  156 (305)
Q Consensus        89 ~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~i~~~~~~~  156 (305)
                      .....  .....++..+++..++.....     +  .++.+....    .. .+...         .........+  +|
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~-----g--~i~~~d~~~----~~~~v~~~~~~~~~~~~~~~~~~pngi--s~  176 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYR-----G--AIWLIDVVQ----PSGSIWLEHPMLARSNSESVFPAANGL--KR  176 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTT-----T--EEEEEETTT----TEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCC-----C--eEEEEeCCC----CcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence            33322  122334444444433333211     1  111111100    00 00000         0111223445  78


Q ss_pred             CCCEEEEee-CCCcEEEEeCCC-CcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE--EEe
Q 021925          157 LNRTIISAG-EDAIVRIWDTET-GKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TYV  230 (305)
Q Consensus       157 ~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~  230 (305)
                      +++.|+.+. ..+.|..+|+.. ++.  ...+.    .......++++++|+++++....+.|.++|.. ++...  .+.
T Consensus       177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~----~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~  251 (306)
T 2p4o_A          177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV----EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE  251 (306)
T ss_dssp             ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE----ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe----ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc
Confidence            887666554 568999999874 321  11111    11235568899999887777778899999975 65533  233


Q ss_pred             eC-CCeeEEEec---CCCCcEEEeeCCc
Q 021925          231 TE-RPVNAVTMS---PLLDHVCIGEPQT  254 (305)
Q Consensus       231 ~~-~~v~~~~~~---~~~~~l~~~~~~~  254 (305)
                      .. ....+++|.   |+++.|++++..+
T Consensus       252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          252 QGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cccCCceEEEEecccCCCCEEEEECCCC
Confidence            22 568899998   8988887776544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.94  E-value=7.1e-08  Score=76.76  Aligned_cols=215  Identities=14%  Similarity=0.048  Sum_probs=128.1

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      ..+.++...++|. |..++.+  |..+|. +++.+..+...........+.  +..+..++.++.|..+|.+ ++.....
T Consensus        60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~  132 (330)
T 3hxj_A           60 IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRF  132 (330)
T ss_dssp             EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred             CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEE
Confidence            3456666666664 4445544  888875 565544443322222233333  4467778888999999988 7777666


Q ss_pred             eeC-CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925           91 NFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (305)
Q Consensus        91 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  169 (305)
                      ... ..+.++...+++.+.+...+..+....      .      . ++...........+.++...+++...+. +  +.
T Consensus       133 ~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d------~------~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~  196 (330)
T 3hxj_A          133 KTKKAIYATPIVSEDGTIYVGSNDNYLYAIN------P------D-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DK  196 (330)
T ss_dssp             ECSSCCCSCCEECTTSCEEEECTTSEEEEEC------T------T-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SS
T ss_pred             cCCCceeeeeEEcCCCEEEEEcCCCEEEEEC------C------C-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CE
Confidence            633 345566666677766554432221111      0      1 2333333444456677777777775544 4  88


Q ss_pred             EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-CCeeEEEecCCCCcEE
Q 021925          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVC  248 (305)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~  248 (305)
                      |..+| .+++......   .....+.++...++|. |..++.++.+..+| .+++.+..+... ..+.++...+++ .|.
T Consensus       197 l~~~d-~~g~~~~~~~---~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~  269 (330)
T 3hxj_A          197 VYAIN-PDGTEKWNFY---AGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIY  269 (330)
T ss_dssp             EEEEC-TTSCEEEEEC---CSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEE
T ss_pred             EEEEC-CCCcEEEEEc---cCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEE
Confidence            99999 7777766655   2345677788888775 56677788899887 456666666533 334556666666 456


Q ss_pred             EeeCCcE
Q 021925          249 IGEPQTI  255 (305)
Q Consensus       249 ~~~~~~~  255 (305)
                      +++.++.
T Consensus       270 v~t~~gg  276 (330)
T 3hxj_A          270 FGSYDGH  276 (330)
T ss_dssp             EECTTCE
T ss_pred             EecCCCC
Confidence            6666654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=1.2e-07  Score=82.86  Aligned_cols=217  Identities=12%  Similarity=0.135  Sum_probs=124.4

Q ss_pred             EEEEEcCCCCEEEEeeCCC-------------------ceEEEEcCCCeeeEEecC--CC-------cceEEEEEcCCCc
Q 021925           14 TYLKYNKDGDLLFSCAKDH-------------------TPTVWFADNGERLGTYRG--HN-------GAVWCCDVSRDSM   65 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~~dg-------------------~v~iw~~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~   65 (305)
                      ..++++|++..++.++.++                   .|..+|..+|+.+..++.  |.       .+.....+..+|+
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            4578888888888887766                   389999999998877764  22       2333333333664


Q ss_pred             ---EEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925           66 ---TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (305)
Q Consensus        66 ---~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (305)
                         .++.++.+|.+.++|.++++.+.............+.+....-........                  ..+.....
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~------------------~~~~~~~~  374 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY------------------EKEPIVMW  374 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC------------------SSSCEEES
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccc------------------cCCeeEEC
Confidence               688999999999999999999876653321111111110000000000000                  00000000


Q ss_pred             eccCC--CeeEEEEcCCCCEEE------------------------------------EeeCCCcEEEEeCCCCcEeeee
Q 021925          143 KGPQG--RINRAVWGPLNRTII------------------------------------SAGEDAIVRIWDTETGKLLKES  184 (305)
Q Consensus       143 ~~~~~--~i~~~~~~~~~~~l~------------------------------------~~~~dg~i~iwd~~~~~~~~~~  184 (305)
                      .+..+  .-..++++|+...++                                    ....+|.|..||+.+++.+.+.
T Consensus       375 p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~  454 (668)
T 1kv9_A          375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV  454 (668)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE
T ss_pred             CCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEc
Confidence            00000  001122222222221                                    1224588999999999988777


Q ss_pred             ccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCe--eEEEecCCCC-cEEEeeC
Q 021925          185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV--NAVTMSPLLD-HVCIGEP  252 (305)
Q Consensus       185 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~-~l~~~~~  252 (305)
                      ..    ..+.....+...+.++++++.||.++.||.++++.+..+.....+  .-+.+..+|+ +++++++
T Consensus       455 ~~----~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G  521 (668)
T 1kv9_A          455 PY----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG  521 (668)
T ss_dssp             EE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             cC----CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEec
Confidence            52    222222233445778899999999999999999999998854433  2344456666 5555544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.89  E-value=9e-06  Score=62.59  Aligned_cols=215  Identities=8%  Similarity=-0.030  Sum_probs=122.8

Q ss_pred             CEEEEeeCCCceEEEEcCCCeee-----EEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCCCCeeEEEeeC-CC
Q 021925           23 DLLFSCAKDHTPTVWFADNGERL-----GTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFD-SP   95 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~-----~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~-~~   95 (305)
                      ++|+.+.. +.|+.+++......     ..+......+.+++|++++..|+ +-..++.|..++............. ..
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            44555543 47888887654321     11221234578999999665555 4445789999998766543333322 46


Q ss_pred             ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC---CCcEEE
Q 021925           96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRI  172 (305)
Q Consensus        96 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i  172 (305)
                      ...+++.+++..++.+....    ..+...+..      .................++++|++..|+.+..   .+.|..
T Consensus        81 p~~ia~d~~~~~lyv~d~~~----~~I~~~~~~------g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~  150 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQL----DRIEVAKMD------GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET  150 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTT----TEEEEEETT------SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred             ccEEEEEecCCeEEEEECCC----CEEEEEEcC------CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence            78999999765555543221    122222211      01111112222246788999997666655553   368888


Q ss_pred             EeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925          173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      +++.... ...+..  ........+++++++..|+. -...+.|.++|..................++..  +..|.++.
T Consensus       151 ~~~dg~~-~~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~  225 (267)
T 1npe_A          151 SHMDGTN-RRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTD  225 (267)
T ss_dssp             EETTSCC-CEEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEE
T ss_pred             EecCCCC-cEEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEE
Confidence            8876432 222211  12346788999998766654 445689999999865444333333334566654  45566655


Q ss_pred             CC
Q 021925          252 PQ  253 (305)
Q Consensus       252 ~~  253 (305)
                      ..
T Consensus       226 ~~  227 (267)
T 1npe_A          226 WK  227 (267)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.85  E-value=3e-06  Score=72.68  Aligned_cols=231  Identities=9%  Similarity=-0.015  Sum_probs=136.1

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeeeEEecCCCc----ceEE-EEEcCCCcEEEEEeC------CCcEEEEecCCCCeeEEE
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----AVWC-CDVSRDSMTLITGSA------DQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~~-i~~~~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~   90 (305)
                      +..++.++.|+.+..+|..+|+.+.+......    .+.+ .... ++ .++.++.      ++.|..+|.++++.+.++
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            45677788899999999999998876653210    1111 1111 44 4555554      799999999999999888


Q ss_pred             eeCCCc---------------------------------------eEEEEecCCceEEEeCCcce-----------eeee
Q 021925           91 NFDSPA---------------------------------------RSVDFAVGDKLAVITTDPFM-----------ELNS  120 (305)
Q Consensus        91 ~~~~~v---------------------------------------~~~~~~~~~~~~~~~~~~~~-----------~~~~  120 (305)
                      ......                                       ..+++.+....++.+.....           .+..
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            743322                                       12556665555555442110           0001


Q ss_pred             eEEEEEeecccCCCCCceEEEEec--cCC-------CeeEEEEcCCCC---EEEEeeCCCcEEEEeCCCCcEeeeecccc
Q 021925          121 AIHVKRIARDPADQGGESVLILKG--PQG-------RINRAVWGPLNR---TIISAGEDAIVRIWDTETGKLLKESDKET  188 (305)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  188 (305)
                      .+...+.      ..++.+-.++.  |..       ...-+...++|+   .++.++.+|.++++|..+++.+.......
T Consensus       273 ~v~Ald~------~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~  346 (571)
T 2ad6_A          273 TIWGRDL------DTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDP  346 (571)
T ss_dssp             EEEEEET------TTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred             EEEEEec------CCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccC
Confidence            1111111      12333333321  110       111122224563   56778889999999999999877654211


Q ss_pred             CC----------ccce--------------------------EEEEEcCCCCEEEEEe----------------------
Q 021925          189 GH----------KKTI--------------------------TSLAKAADGSHFLTGS----------------------  210 (305)
Q Consensus       189 ~~----------~~~v--------------------------~~~~~~~~~~~l~~~~----------------------  210 (305)
                      ..          ..++                          ..++++|+...+++.+                      
T Consensus       347 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g  426 (571)
T 2ad6_A          347 AVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG  426 (571)
T ss_dssp             TCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred             CccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccc
Confidence            00          0111                          2357788777766653                      


Q ss_pred             ---------------CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925          211 ---------------LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       211 ---------------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                                     .+|.|..||+.+++.+.++....++....+...+..+++++.++....+.
T Consensus       427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D  491 (571)
T 2ad6_A          427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence                           35789999999999998888666555544555566777787777644333

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.81  E-value=1.2e-06  Score=75.16  Aligned_cols=83  Identities=18%  Similarity=0.161  Sum_probs=58.2

Q ss_pred             CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE--EEecCC
Q 021925          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPL  243 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~  243 (305)
                      .+|.|.-||+.+++.+.+....    .++..-.....+.+++.++.||.++.+|.++|+.+.+++....+.+  +.+..+
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~  539 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQD  539 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             CcceEEEEECCCCCEEEEecCC----CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEEC
Confidence            3688999999999988776521    1111111112356788899999999999999999999986555543  667678


Q ss_pred             CC-cEEEeeC
Q 021925          244 LD-HVCIGEP  252 (305)
Q Consensus       244 ~~-~l~~~~~  252 (305)
                      |+ ++++.++
T Consensus       540 G~qYv~~~~G  549 (582)
T 1flg_A          540 GEQYLGVTVG  549 (582)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEcc
Confidence            87 4555444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.80  E-value=9.4e-07  Score=77.28  Aligned_cols=238  Identities=11%  Similarity=0.049  Sum_probs=129.3

Q ss_pred             EEEEcC-CCCEEEEeeCCC-----------ceEEEEcCCCeee--EEec-CCCcceEEEEEcCCCcEEEEEeC-CCcEEE
Q 021925           15 YLKYNK-DGDLLFSCAKDH-----------TPTVWFADNGERL--GTYR-GHNGAVWCCDVSRDSMTLITGSA-DQTAKL   78 (305)
Q Consensus        15 ~~~~~~-~~~~l~s~~~dg-----------~v~iw~~~~~~~~--~~~~-~~~~~v~~i~~~~~~~~l~s~~~-dg~v~v   78 (305)
                      +.++.+ +++.++.|+.+.           .+.+||..+++..  ..+. .+.....++++..+++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556677 888888887543           5788998877532  2232 23333445777889999999884 568999


Q ss_pred             EecCCCCeeEEEe--eCCCceEEEEecCCceEEEeC-CcceeeeeeEEEEEeecc------------cCCC-------CC
Q 021925           79 WNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARD------------PADQ-------GG  136 (305)
Q Consensus        79 wd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~-------~~  136 (305)
                      ||..+++-...-.  ....-.+++..++++++++++ .........+..++....            ....       ..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~  349 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  349 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence            9988764332212  122223456667888888776 221111222222222110            0000       00


Q ss_pred             ceEEEEeccC---------------------------------------CCeeEEEEc-CCCCEEEEeeCCC--------
Q 021925          137 ESVLILKGPQ---------------------------------------GRINRAVWG-PLNRTIISAGEDA--------  168 (305)
Q Consensus       137 ~~~~~~~~~~---------------------------------------~~i~~~~~~-~~~~~l~~~~~dg--------  168 (305)
                      ..+..+.+..                                       ..-.++.+. .+++.++.|+.++        
T Consensus       350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~  429 (656)
T 1k3i_A          350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT  429 (656)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred             CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence            0000111000                                       011233333 3567777877532        


Q ss_pred             ---cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----------CeEEEEEcCCceEEEEEe--eC
Q 021925          169 ---IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----------KSAKLWDARTLELIKTYV--TE  232 (305)
Q Consensus       169 ---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~--~~  232 (305)
                         .|.+||..+.+..............-.+++..|++++++.|+.+           ..+.+||..+.+-...-.  ..
T Consensus       430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~  509 (656)
T 1k3i_A          430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV  509 (656)
T ss_dssp             CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC
T ss_pred             cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc
Confidence               68888887765443320000111122345567899999999864           468999998765432211  11


Q ss_pred             C-CeeEEEecCCCCcEEEeeC
Q 021925          233 R-PVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       233 ~-~v~~~~~~~~~~~l~~~~~  252 (305)
                      . ...+..+.|+++.+++|+.
T Consensus       510 R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          510 RVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCTTEEEEECTTSCEEEEECC
T ss_pred             cccccHhhcCCCcEEEecCCC
Confidence            1 1234556799999999875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.78  E-value=1.4e-06  Score=70.11  Aligned_cols=181  Identities=7%  Similarity=-0.104  Sum_probs=114.9

Q ss_pred             cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcce-----eeeeeEEEEEeecccCCCCCceEEEEecc----
Q 021925           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM-----ELNSAIHVKRIARDPADQGGESVLILKGP----  145 (305)
Q Consensus        75 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  145 (305)
                      +|.+.|..+++.+.++...... .+.++|+++.++++.....     ...+.+.+++.      ...+.+..+..+    
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~------~T~~vv~~I~v~~~~~  119 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP------VTFLPIADIELPDAPR  119 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT------TTCCEEEEEEETTSCS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEEC------CCCCEEEEEECCCccc
Confidence            7889999999999999966666 8999999999988752100     11233333333      234455555432    


Q ss_pred             ---CCCeeEEEEcCCCCEEEEeeC--CCcEEE--EeCCCCcEee---------------------------eecc-----
Q 021925          146 ---QGRINRAVWGPLNRTIISAGE--DAIVRI--WDTETGKLLK---------------------------ESDK-----  186 (305)
Q Consensus       146 ---~~~i~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~---------------------------~~~~-----  186 (305)
                         ......++++|||++++++..  +..+.+  +|..+-+.+.                           .+..     
T Consensus       120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence               124567899999998888864  356777  7774300000                           0000     


Q ss_pred             --------------------------------------ccCCc---------------------cceEEEEEcCCCCEEE
Q 021925          187 --------------------------------------ETGHK---------------------KTITSLAKAADGSHFL  207 (305)
Q Consensus       187 --------------------------------------~~~~~---------------------~~v~~~~~~~~~~~l~  207 (305)
                                                            .....                     .....++++|+++.++
T Consensus       200 ~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ly  279 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM  279 (368)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             CeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEE
Confidence                                                  00000                     0001167889988887


Q ss_pred             EEeC-C--------CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEE-ee-CCcEEEEEEee
Q 021925          208 TGSL-D--------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCI-GE-PQTIKFMLLVY  262 (305)
Q Consensus       208 ~~~~-d--------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-~~~~~~~~~~~  262 (305)
                      .+.. +        +.+.++|+.+++.+..+..+.....++|+|||+.+++ .. .++...++...
T Consensus       280 V~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             EEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            6543 2        3566999999999999986667999999999986544 44 46664444433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.78  E-value=6.2e-05  Score=67.43  Aligned_cols=233  Identities=8%  Similarity=-0.015  Sum_probs=142.0

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-------CCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      ...|.++...++|.+.+ |+.++-+..||..+++.......       ....|.++...++|...+ |+.+ -|.+||..
T Consensus       214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~  290 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG  290 (795)
T ss_dssp             CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred             CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence            45688888888876555 44444588899877654432221       135699999988886544 4555 48999987


Q ss_pred             CCCeeEEEe--------eCCCceEEEEecCCceEEEeCCcceeeeee--EEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925           83 TGAQLFTFN--------FDSPARSVDFAVGDKLAVITTDPFMELNSA--IHVKRIARDPADQGGESVLILKGPQGRINRA  152 (305)
Q Consensus        83 ~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (305)
                      +++......        ....|.++...+++.+.+....+.+.....  ...........   .     -......|.++
T Consensus       291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~---~-----~~l~~~~V~~i  362 (795)
T 4a2l_A          291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPY---K-----NSLSDNVVSCI  362 (795)
T ss_dssp             TTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTT---S-----SSCSCSSEEEE
T ss_pred             CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCC---C-----CCCCCCeeEEE
Confidence            665433221        124678888888888777665433222110  00000000000   0     00124568889


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc-----cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925          153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-----TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (305)
Q Consensus       153 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  227 (305)
                      ...++|+ |..|+.++-|..||..+++........     .-....|.++...++++.|..|+.++-+..+|..+++...
T Consensus       363 ~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~  441 (795)
T 4a2l_A          363 VEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN  441 (795)
T ss_dssp             EECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             EECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE
Confidence            8888876 556777778999998876543322110     0124578999998888757777877789999988775433


Q ss_pred             EEe-----eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          228 TYV-----TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       228 ~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ...     ....|.++...++|++.+. +..+.
T Consensus       442 ~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~Gl  473 (795)
T 4a2l_A          442 FNQRNSQLVNENVYAILPDGEGNLWLG-TLSAL  473 (795)
T ss_dssp             ECTTTSCCSCSCEEEEEECSSSCEEEE-ESSCE
T ss_pred             eecCCCCcCCCeeEEEEECCCCCEEEE-ecCce
Confidence            211     2346889998888875544 44553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.77  E-value=1.1e-06  Score=77.96  Aligned_cols=197  Identities=10%  Similarity=-0.003  Sum_probs=108.9

Q ss_pred             ceEEEEEc-CCCCEEEEeeC-CC----ceEEEEcCCC-eeeE-EecCCCcceEEEEEcCCCcEEEEEeCC-----CcEEE
Q 021925           12 PLTYLKYN-KDGDLLFSCAK-DH----TPTVWFADNG-ERLG-TYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKL   78 (305)
Q Consensus        12 ~v~~~~~~-~~~~~l~s~~~-dg----~v~iw~~~~~-~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~v   78 (305)
                      .+...+|| |||++||.+.. +|    .|+++|+.++ +.+. .+.   .....++|+||++.|+....|     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 99998886533 23    4999999988 6321 111   123468899999888776665     25888


Q ss_pred             EecCCCCe--eEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCce--EEEEeccCCCeeEE
Q 021925           79 WNVETGAQ--LFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES--VLILKGPQGRINRA  152 (305)
Q Consensus        79 wd~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~  152 (305)
                      +++.+++.  ...+.  .......+.|+|+++.++......  ....+.+.++...    ..+.  ............++
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~l~~~d~~~~----~~~~~~~~l~~~~~~~~~s~  325 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP--ETAEVHLLDLRKG----NAHNTLEIVRPREKGVRYDV  325 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS--SCEEEEEEESSSC----TTCCCEEESSCCCTTCCEEE
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC--CCceEEEEECCCC----CCCceeEEeecCCCCceEEE
Confidence            88877642  23333  223456788999999888765322  1222233332211    1112  22222333445555


Q ss_pred             EEcCCCCEEEEeeCC----CcEEEEeCCCCcEeee--eccccCCccceEEEEEcCCCCEEEEEeCCCe--EEEEEc
Q 021925          153 VWGPLNRTIISAGED----AIVRIWDTETGKLLKE--SDKETGHKKTITSLAKAADGSHFLTGSLDKS--AKLWDA  220 (305)
Q Consensus       153 ~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~iwd~  220 (305)
                      .|+..+.+++....+    ..|..+|+.+......  +..  .....+..+.+. .+.++++...+|.  |.++|+
T Consensus       326 ~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~--~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          326 QMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH--SEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC--CSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             eeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC--CCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            554434444444433    3677778765322122  220  112245555554 3345566777776  555565

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.76  E-value=2.7e-06  Score=74.43  Aligned_cols=232  Identities=14%  Similarity=0.118  Sum_probs=138.5

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeeeEEecCCC----cceEE-EEEcCCCcEEEEEeC------CCcEEEEecCCCCeeEEE
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHN----GAVWC-CDVSRDSMTLITGSA------DQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~----~~v~~-i~~~~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~   90 (305)
                      +..++.++.|+.|..+|..+|+.+.++....    ..+.+ ..+. ++ .++++..      +|.|..+|.++++.+..+
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            4567888889999999999999887776421    11111 1111 44 4555443      589999999999999988


Q ss_pred             eeC--CC------------------------------ceEEEEecCCceEEEeCCcceeeee------------eEEEEE
Q 021925           91 NFD--SP------------------------------ARSVDFAVGDKLAVITTDPFMELNS------------AIHVKR  126 (305)
Q Consensus        91 ~~~--~~------------------------------v~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~  126 (305)
                      ...  .+                              ...+++.+....++++.........            ...+.-
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A  274 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA  274 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            631  11                              1136778777777666543210000            000111


Q ss_pred             eecccCCCCCceEEEEec--cC-------CCeeEEEEcCCCC---EEEEeeCCCcEEEEeCCCCcEeeeecccc------
Q 021925          127 IARDPADQGGESVLILKG--PQ-------GRINRAVWGPLNR---TIISAGEDAIVRIWDTETGKLLKESDKET------  188 (305)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------  188 (305)
                      +.    ...++..-.++.  |.       .+........+++   .++.++.+|.++++|..+++.+.......      
T Consensus       275 lD----~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  350 (668)
T 1kv9_A          275 IR----PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (668)
T ss_dssp             EC----TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             Ec----CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence            11    123333333332  21       1222222223554   68889999999999999999874432110      


Q ss_pred             ---CCccc------------------------eEEEEEcCCCCEEEEE--------------------------------
Q 021925          189 ---GHKKT------------------------ITSLAKAADGSHFLTG--------------------------------  209 (305)
Q Consensus       189 ---~~~~~------------------------v~~~~~~~~~~~l~~~--------------------------------  209 (305)
                         ....+                        -..++++|+...++..                                
T Consensus       351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  430 (668)
T 1kv9_A          351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (668)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCC
Confidence               00000                        0125677766655531                                


Q ss_pred             ----eCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925          210 ----SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       210 ----~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~  259 (305)
                          ..+|.|..||+.+++.+.+.....+.....+...+.++++++.++....+
T Consensus       431 ~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~  484 (668)
T 1kv9_A          431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAY  484 (668)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred             CCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhh
Confidence                13488999999999999888876666666677778888888888774433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.72  E-value=2.6e-06  Score=73.01  Aligned_cols=214  Identities=15%  Similarity=0.056  Sum_probs=119.3

Q ss_pred             EEEEcCCCCEEEEeeCC----------------CceEEEEcCCCeeeEEecC--CC--------cceEEEEEcCCCc---
Q 021925           15 YLKYNKDGDLLFSCAKD----------------HTPTVWFADNGERLGTYRG--HN--------GAVWCCDVSRDSM---   65 (305)
Q Consensus        15 ~~~~~~~~~~l~s~~~d----------------g~v~iw~~~~~~~~~~~~~--~~--------~~v~~i~~~~~~~---   65 (305)
                      .+++.++...++.++.+                +.|..+|..+|+.+..++.  |.        .++. +....+|+   
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence            35667766666665532                2589999999998877653  21        2222 22224674   


Q ss_pred             EEEEEeCCCcEEEEecCCCCeeEEEeeCCCc----------------------------------------eEEEEecCC
Q 021925           66 TLITGSADQTAKLWNVETGAQLFTFNFDSPA----------------------------------------RSVDFAVGD  105 (305)
Q Consensus        66 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v----------------------------------------~~~~~~~~~  105 (305)
                      .++.++.+|.+.++|.++++.+........+                                        ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            5778889999999999999998887643311                                        123444444


Q ss_pred             ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec
Q 021925          106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD  185 (305)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  185 (305)
                      .++++......     .........  ...+..      .-+.-..+..+|.+.   ....+|.|..||+.+++.+.++.
T Consensus       398 g~~yv~~~~~~-----~~~~~~~~~--~~~g~~------~~g~~~~~~~~~~~~---~~~~~g~l~a~D~~tG~~~W~~~  461 (571)
T 2ad6_A          398 RTLYAGLNHIC-----MDWEPFMLP--YRAGQF------FVGATLAMYPGPNGP---TKKEMGQIRAFDLTTGKAKWTKW  461 (571)
T ss_dssp             TEEEEEEECEE-----EEEEECCCC--CCTTSC------CCCEEEEEEECTTST---TSCCCEEEEEECTTTCCEEEEEE
T ss_pred             CEEEEEchhcc-----ccccccccc--cccCCc------cccccceeccCcccc---CCCCCCeEEEEECCCCCEEEEec
Confidence            44444321100     000000000  000000      000000111122111   00246899999999999888775


Q ss_pred             cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCee--EEEecCCCCcEEE
Q 021925          186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN--AVTMSPLLDHVCI  249 (305)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~  249 (305)
                      .    ...+........+..++.++.||.++.+|.++++.+.++.....+.  -+.+..+|+.++.
T Consensus       462 ~----~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          462 E----KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             E----SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             C----CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            2    1222222222245677789999999999999999999998554442  2345577765443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.72  E-value=4.6e-05  Score=62.04  Aligned_cols=207  Identities=10%  Similarity=-0.069  Sum_probs=124.4

Q ss_pred             cceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecCCCCeeE
Q 021925           11 RPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      ..+..++|++.+..|+ +-...+.|..++.........+.........+++.+.+. +.++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            3467899997555444 445567888898876554443433334457788887544 44555557789998887554333


Q ss_pred             EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-C
Q 021925           89 TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-E  166 (305)
Q Consensus        89 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  166 (305)
                      ... .-.....+++.|.+..++.+....     ...++.....    .................++++|++..|+.+. .
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~-----~~~I~r~~~d----G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~  266 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMD----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK  266 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSS-----SCEEEEEETT----SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETT
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCC-----CCEEEEEeCC----CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECC
Confidence            333 235678899998766665553211     1222222211    1111222223344578899998777666554 4


Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      .+.|..+|+........+.   ........+++ ..+.++++-...+.|..+|..+++.+..+.
T Consensus       267 ~~~I~~~d~dG~~~~~~~~---~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          267 HHVIERANLDGSHRKAVIS---QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTEEEEECTTSCSCEEEEC---SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEeCCCCeeEEEEE---CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            6789999987433322222   12345567777 345566666678889999977777666665

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.71  E-value=5e-06  Score=63.36  Aligned_cols=159  Identities=14%  Similarity=0.017  Sum_probs=102.3

Q ss_pred             CeeeEEecCCCc--ceEEEEEcCCCcEEEEEeC--CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCccee
Q 021925           42 GERLGTYRGHNG--AVWCCDVSRDSMTLITGSA--DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME  117 (305)
Q Consensus        42 ~~~~~~~~~~~~--~v~~i~~~~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  117 (305)
                      .+.+.++. |..  ....+.|++++.+.++.+.  ++.|.+.|+.+++.+..+..+....                    
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f--------------------   67 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF--------------------   67 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC--------------------
T ss_pred             ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc--------------------
Confidence            34556664 553  3689999998755555543  5799999999999887665221100                    


Q ss_pred             eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCCCCcEeeeeccccCCccceEE
Q 021925          118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITS  196 (305)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  196 (305)
                                                     ...+++.  ++.|+.+ -.++.+.++|..+.+.+.++...   ...  .
T Consensus        68 -------------------------------geGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g---~~~--g  109 (266)
T 2iwa_A           68 -------------------------------GEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ---MKD--G  109 (266)
T ss_dssp             -------------------------------EEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECC---SSS--C
T ss_pred             -------------------------------eEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECC---CCC--e
Confidence                                           0123333  3444444 45789999999999999888632   111  1


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC---C---CeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925          197 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---R---PVNAVTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       197 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~---~v~~~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                      ..+++||+.++++..+++|.++|..+.+.+..+...   .   .++.+.|. +|+..+.....+...+..
T Consensus       110 ~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID  178 (266)
T 2iwa_A          110 WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS  178 (266)
T ss_dssp             CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence            235567877777777899999999999988888722   1   35678888 664443333344443333

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.71  E-value=8.3e-06  Score=70.03  Aligned_cols=225  Identities=16%  Similarity=0.112  Sum_probs=130.1

Q ss_pred             EEEeeCCCceEEEEcCCCeeeEEecCCCc----ceEE-EEEcCCCcEEEEEe------CCCcEEEEecCCCCeeEEEeeC
Q 021925           25 LFSCAKDHTPTVWFADNGERLGTYRGHNG----AVWC-CDVSRDSMTLITGS------ADQTAKLWNVETGAQLFTFNFD   93 (305)
Q Consensus        25 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~~-i~~~~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~   93 (305)
                      |+.++.|+.|.-+|..+|+.+.+......    .+.+ ..+. ++ .+++++      .+|.|.-+|.++++.+.++...
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            77788899999999999998876653220    1111 1111 44 455554      3799999999999999988744


Q ss_pred             CCc---------------------------------------eEEEEecCCceEEEeCCcceee-----------eeeEE
Q 021925           94 SPA---------------------------------------RSVDFAVGDKLAVITTDPFMEL-----------NSAIH  123 (305)
Q Consensus        94 ~~v---------------------------------------~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~  123 (305)
                      .+.                                       ..+++.+....++.+.......           ...+.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            322                                       1345666666666654321100           01111


Q ss_pred             EEEeecccCCCCCceEEEEeccCC---------CeeEEEEc-CCC---CEEEEeeCCCcEEEEeCCCCcEeeeecccc--
Q 021925          124 VKRIARDPADQGGESVLILKGPQG---------RINRAVWG-PLN---RTIISAGEDAIVRIWDTETGKLLKESDKET--  188 (305)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~---------~i~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--  188 (305)
                      ..+.      ..++..-.++....         ...-+... .+|   +.++.++.+|.++++|.++++.+.......  
T Consensus       282 Ald~------~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~  355 (599)
T 1w6s_A          282 GRDA------DTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTV  355 (599)
T ss_dssp             EEET------TTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred             EEeC------CCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCc
Confidence            1111      12333333322111         01111221 456   467778899999999999999887654211  


Q ss_pred             --------CCccce--------------------------EEEEEcCCCCEEEEE-------------------------
Q 021925          189 --------GHKKTI--------------------------TSLAKAADGSHFLTG-------------------------  209 (305)
Q Consensus       189 --------~~~~~v--------------------------~~~~~~~~~~~l~~~-------------------------  209 (305)
                              ....++                          ..++++|+..++++.                         
T Consensus       356 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~  435 (599)
T 1w6s_A          356 NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGAT  435 (599)
T ss_dssp             CSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             ccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccc
Confidence                    000011                          235566665555432                         


Q ss_pred             --------e------CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925          210 --------S------LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKF  257 (305)
Q Consensus       210 --------~------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~  257 (305)
                              +      .+|.+..||+.+++.+.+.....+...-.+...+..+++++.++...
T Consensus       436 ~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~  497 (599)
T 1w6s_A          436 LNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLK  497 (599)
T ss_dssp             EEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEE
T ss_pred             ceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEE
Confidence                    1      35789999999999998887555444333444566777777777643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.70  E-value=5.1e-05  Score=62.71  Aligned_cols=230  Identities=6%  Similarity=0.026  Sum_probs=127.1

Q ss_pred             ceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CC----cEEEEecCCCC
Q 021925           12 PLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ----TAKLWNVETGA   85 (305)
Q Consensus        12 ~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg----~v~vwd~~~~~   85 (305)
                      ....++++| ++..|+.+...+.|+.+|..+++...... .......++|++++++|+.+.. ++    .+...+. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            467899998 45566666555889999988766544333 4556899999999996666554 22    2333443 332


Q ss_pred             ee--EEEeeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-ccCCCeeEEEEcCCCCEE
Q 021925           86 QL--FTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        86 ~~--~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l  161 (305)
                      ..  ..+........+++.| ++.+.++....     ..+...+..      ......... +.......++++|++++|
T Consensus       216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~-----~~V~~~~~~------~~~~~~~~~~~~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          216 FKVITELTKGQNCNGAETHPINGELYFNSWNA-----GQVFRYDFT------TQETTPLFTIQDSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             SCSEEEEEECSSCCCEEECTTTCCEEEEETTT-----TEEEEEETT------TTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred             eeeeeeeccCCCceEEEEeCCCCEEEEEECCC-----CEEEEEECC------CCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence            22  3333445677889999 55555544321     112222211      111111111 122356789999999955


Q ss_pred             EEe-eCCCcEEEEeCCC--CcE--eeeeccc---cC---------CccceE-EEEEc--------CCCCEEEEEeCCCeE
Q 021925          162 ISA-GEDAIVRIWDTET--GKL--LKESDKE---TG---------HKKTIT-SLAKA--------ADGSHFLTGSLDKSA  215 (305)
Q Consensus       162 ~~~-~~dg~i~iwd~~~--~~~--~~~~~~~---~~---------~~~~v~-~~~~~--------~~~~~l~~~~~dg~i  215 (305)
                      +.+ ...+.|..++...  ++.  +..+...   .+         .-.... .++..        ++|.+.++-...++|
T Consensus       285 yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I  364 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI  364 (430)
T ss_dssp             EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred             EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence            544 4578899987653  221  1111100   00         011223 45553        346666666667889


Q ss_pred             EEEEcCCceEEEEEee---------C---------CCeeEEEecCCCCcEEEeeCCcE
Q 021925          216 KLWDARTLELIKTYVT---------E---------RPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       216 ~iwd~~~~~~~~~~~~---------~---------~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      +.++ .+++.......         .         .....++++|++..|+++...+.
T Consensus       365 ~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~  421 (430)
T 3tc9_A          365 RILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENR  421 (430)
T ss_dssp             EEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred             EEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCC
Confidence            9988 45644333321         1         13688999996555666654443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.69  E-value=2.2e-05  Score=62.25  Aligned_cols=199  Identities=10%  Similarity=0.062  Sum_probs=117.3

Q ss_pred             ceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecC-----CCcceEEEEEcC-CCcEEEEEeC------------
Q 021925           12 PLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRG-----HNGAVWCCDVSR-DSMTLITGSA------------   72 (305)
Q Consensus        12 ~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-----~~~~v~~i~~~~-~~~~l~s~~~------------   72 (305)
                      .+..+++.+ +|++++ +...+.|..+|..+++. ..+..     .......+++.+ +|+..++-..            
T Consensus        81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CEEEEEEETTTTEEEE-EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence            578899998 665444 44445588888665432 22211     113468899999 8976665432            


Q ss_pred             -----CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC
Q 021925           73 -----DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (305)
Q Consensus        73 -----dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (305)
                           ++.|..+|..+++.......-.....++++++++.++++...    ...+...++...   .... ...+....+
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~----~~~I~~~~~~~~---~~~~-~~~~~~~~g  230 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFL----SHQIVKYWLEGP---KKGT-AEVLVKIPN  230 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG----GTEEEEEESSST---TTTC-EEEEEECSS
T ss_pred             cccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCC----CCeEEEEECCCC---cCCc-cceEEeCCC
Confidence                 367888898766654333334556789999999866665321    122333332211   0011 111111223


Q ss_pred             CeeEEEEcCCCCEEEEeeC----------CCcEEEEeCCCCcEeeeeccccCC-ccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925          148 RINRAVWGPLNRTIISAGE----------DAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAADGSHFLTGSLDKSAK  216 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~  216 (305)
                       ...+++.++|++.++...          .+.|..+|.. ++.+..+....+. ...++.+++ .+++++++...++.|.
T Consensus       231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~  307 (322)
T 2fp8_A          231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVG  307 (322)
T ss_dssp             -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEE
T ss_pred             -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceE
Confidence             778999999986666544          4678889874 7776666532221 234566666 4566666666788899


Q ss_pred             EEEcCCc
Q 021925          217 LWDARTL  223 (305)
Q Consensus       217 iwd~~~~  223 (305)
                      .+++...
T Consensus       308 ~~~~~~~  314 (322)
T 2fp8_A          308 ILVYDKK  314 (322)
T ss_dssp             EEEC---
T ss_pred             EEecccc
Confidence            9987643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.69  E-value=4.2e-05  Score=57.95  Aligned_cols=198  Identities=10%  Similarity=0.074  Sum_probs=122.0

Q ss_pred             EecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeEEEeeC--CCceEEEEecCCceEEEeCCcceeeeeeEE
Q 021925           47 TYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIH  123 (305)
Q Consensus        47 ~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (305)
                      .+.+-.+.+..++++|++..| ++...++.|...|.. ++.+..+...  .....+++.+++.++++....     ..+.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~-----~~l~   94 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERD-----YAIY   94 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTT-----TEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCC-----CcEE
Confidence            455666789999999976555 557778899999987 8888887644  467788888888766554332     1122


Q ss_pred             EEEeecccCCCCCceEEEE------eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC---CCcEeeeecc----ccCC
Q 021925          124 VKRIARDPADQGGESVLIL------KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE---TGKLLKESDK----ETGH  190 (305)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~----~~~~  190 (305)
                      ...+.....   .......      .........++++|.++.|+++.+.....+|.++   ....+.....    ....
T Consensus        95 ~~~v~~~~~---i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~  171 (255)
T 3qqz_A           95 VISLTPNSE---VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT  171 (255)
T ss_dssp             EEEECTTCC---EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred             EEEcCCCCe---eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence            222211100   0011111      1234557899999999888887776555555553   1111111110    0112


Q ss_pred             ccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceEEEEEeeC----------CCeeEEEecCCCCcEEEeeCCcE
Q 021925          191 KKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTE----------RPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       191 ~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ...+.+++++|. +++++.....+.+..+|.. ++.+..+...          .....++|.++|++.++ +..+.
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~  245 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNR  245 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTE
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCce
Confidence            345788999995 4556666677889999965 6676666522          25689999999985555 55553

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.68  E-value=0.00017  Score=64.55  Aligned_cols=226  Identities=8%  Similarity=0.027  Sum_probs=140.6

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-------CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ..|.++...++|.+.+ |+.+ -|.+|+..+++.......       ....|.++...++|. |..|+.++-|..++..+
T Consensus       263 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~  339 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIR  339 (795)
T ss_dssp             SBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGG
T ss_pred             CeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCc
Confidence            5699999998887655 4445 588899877664432211       235799999998886 55567767799998765


Q ss_pred             CCeeEEEe-------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe---------ccCC
Q 021925           84 GAQLFTFN-------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK---------GPQG  147 (305)
Q Consensus        84 ~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  147 (305)
                      +.......       ....|.++...+++.+.+...++.+.....      .      . .....+.         ....
T Consensus       340 ~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~------~------~-~~~~~~~~~~~~~~~~l~~~  406 (795)
T 4a2l_A          340 NRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNP------I------T-QRFTSYTLQEDESARGIGSN  406 (795)
T ss_dssp             GSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECT------T------T-CCEEEECCC------CCSCS
T ss_pred             ccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcC------C------C-CcEEEEecCCCCcccCCCCc
Confidence            54322111       134577888777777766655423222111      0      0 0111110         1235


Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeecc-ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE
Q 021925          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  226 (305)
                      .|.++...++++.|..|+.++-|..+|.++++....... .......|.++...++|++.+. +.+ -+..||..+++..
T Consensus       407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~  484 (795)
T 4a2l_A          407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFT  484 (795)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEE
Confidence            688999888888577788777899999987764332210 0013457899999888875544 444 4889998876543


Q ss_pred             EEEe-------eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          227 KTYV-------TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       227 ~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ....       ....|.++...++|++.+.+ ..+.
T Consensus       485 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~Gl  519 (795)
T 4a2l_A          485 TIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EEGL  519 (795)
T ss_dssp             ECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SSCE
T ss_pred             EccccccccccCCceEEEEEECCCCCEEEEe-CCce
Confidence            3221       13568899999998765544 4553

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.66  E-value=5.3e-05  Score=57.38  Aligned_cols=204  Identities=13%  Similarity=0.136  Sum_probs=130.3

Q ss_pred             ecccccceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      +.|-.+.+..++|+|++..|+ +...++.|...|.. ++.++++.- -......|++.+++.++++.-.++.+.++++..
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            446667899999999766555 46678889999987 887777642 224578899999887767766678899998866


Q ss_pred             CCee---EEEee-------CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-------ccC
Q 021925           84 GAQL---FTFNF-------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-------GPQ  146 (305)
Q Consensus        84 ~~~~---~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  146 (305)
                      ...+   .....       +.....+++.|.+..++++....     ...++......   .........       .+.
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-----p~~i~~~~g~~---~~~~l~i~~~~~~~~~~~~  172 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-----PIEVYKVNGLL---SSNELHISKDKALQRQFTL  172 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-----SEEEEEEESTT---CSSCCEEEECHHHHHTCCS
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-----CceEEEEcccc---cCCceeeecchhhcccccc
Confidence            5532   22221       22347999999887666655422     12233332110   011112121       123


Q ss_pred             CCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCcEeeeeccccCC------ccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925          147 GRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGH------KKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  219 (305)
                      ..+..++++|....++ .......+..+|.. ++.+..+....+.      -...-.|+|.++|+ |...++.+.++.+.
T Consensus       173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred             CCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence            4578899999775555 45557788999976 5566655433221      13678899999997 55557777777765


Q ss_pred             c
Q 021925          220 A  220 (305)
Q Consensus       220 ~  220 (305)
                      -
T Consensus       251 ~  251 (255)
T 3qqz_A          251 P  251 (255)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.65  E-value=2.6e-05  Score=67.05  Aligned_cols=201  Identities=13%  Similarity=0.103  Sum_probs=117.3

Q ss_pred             CCEEEEeeC-CCceEEEEc-CCCeeeEEecCCCcc-----------eEEEEEcCCCcE----EEEEeCCCcEEEEecCCC
Q 021925           22 GDLLFSCAK-DHTPTVWFA-DNGERLGTYRGHNGA-----------VWCCDVSRDSMT----LITGSADQTAKLWNVETG   84 (305)
Q Consensus        22 ~~~l~s~~~-dg~v~iw~~-~~~~~~~~~~~~~~~-----------v~~i~~~~~~~~----l~s~~~dg~v~vwd~~~~   84 (305)
                      +..|+.++. ++.|.-+|. .+|+.+-++......           ...+++.|.+..    ++.++.|+.|.-+|.+++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            346666777 889999999 899988777643211           123455443334    888889999999999999


Q ss_pred             CeeEEEeeCC-----CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC-------------
Q 021925           85 AQLFTFNFDS-----PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ-------------  146 (305)
Q Consensus        85 ~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  146 (305)
                      +.+.+.....     .+.+.-...++.+++..........+.+...+.      ..++.+-......             
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~------~TG~~~W~~~~~~~~~~~~~~p~~~~  215 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDV------KTGEQVWRAYATGPDKDLLLASDFNI  215 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEET------TTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred             CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEEC------CCCcEEEEEcCCCCcccccccccccc
Confidence            9998877433     222111112444433332100001111111111      1111111111100             


Q ss_pred             ------------------------CCe-eEEEEcCCCCEEEEeeCC----------------CcEEEEeCCCCcEeeeec
Q 021925          147 ------------------------GRI-NRAVWGPLNRTIISAGED----------------AIVRIWDTETGKLLKESD  185 (305)
Q Consensus       147 ------------------------~~i-~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~  185 (305)
                                              ..+ ..+++.+....++.+..+                +.|.-+|.++++.+..++
T Consensus       216 ~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q  295 (599)
T 1w6s_A          216 KNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ  295 (599)
T ss_dssp             TCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee
Confidence                                    001 135566777777776654                379999999999988776


Q ss_pred             cccCCc--------cceEEEEEc-CCC---CEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          186 KETGHK--------KTITSLAKA-ADG---SHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       186 ~~~~~~--------~~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      .. .|.        .++. +... .+|   ..++.++.+|.++++|.++|+.+....
T Consensus       296 ~~-~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          296 KT-PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             SS-TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cC-CCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            42 121        2221 2222 467   467788999999999999999987765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.56  E-value=0.00016  Score=57.92  Aligned_cols=205  Identities=10%  Similarity=-0.067  Sum_probs=122.3

Q ss_pred             ceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCCCCeeEE
Q 021925           12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFT   89 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~~~~~~~   89 (305)
                      .+..++|++.+..|+ +-...+.|..++.........+.........+++.+.+ +..++-...+.|.+.++........
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l  153 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL  153 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence            467889997555554 44456788888887655433333333456788998754 4445555678899999875543333


Q ss_pred             Ee-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCCeeEEEEcCCCCEEEEee-C
Q 021925           90 FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTIISAG-E  166 (305)
Q Consensus        90 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~  166 (305)
                      .. .-.....+++.|.+..++.+....     ...++.....     +.....+ ...-.....++++|++..|+.+. .
T Consensus       154 ~~~~l~~P~~iavdp~~g~ly~td~~~-----~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~  223 (349)
T 3v64_C          154 LWQSLEKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK  223 (349)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEECSS-----SCEEEEEETT-----SCSCEESCCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             EeCCCCCcceEEEecCcCeEEEeccCC-----CCEEEEEeCC-----CCCcEEEEECCCCCcceEEEeCCCCEEEEEECC
Confidence            32 234678899998666555543211     1222222211     1111111 22334578899998777666554 4


Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      .+.|..+|+........+.   ........+++ .++..+++-...+.|...+..+++.+..+.
T Consensus       224 ~~~I~~~~~dG~~~~~~~~---~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          224 HHVIERANLDGSHRKAVIS---QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TTEEEEEETTSCSCEEEEC---SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEeCCCCceEEEEe---CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            6789999987533222222   12345567777 345556666677889999877776666554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.56  E-value=1.7e-05  Score=59.90  Aligned_cols=146  Identities=8%  Similarity=0.091  Sum_probs=96.2

Q ss_pred             eeeEEecCCCc--ceEEEEEcCCCcEEEEEeCCC--cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee
Q 021925           43 ERLGTYRGHNG--AVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL  118 (305)
Q Consensus        43 ~~~~~~~~~~~--~v~~i~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  118 (305)
                      +.+.++. |..  -...+.|+ ++.++.+.+.+|  .|+++|+++++.+..+..+......                   
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fge-------------------   90 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGE-------------------   90 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEE-------------------
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcccee-------------------
Confidence            4455664 554  35889998 677777777766  8999999999988776532211110                   


Q ss_pred             eeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCCCCcEeeeeccccCCccceEEE
Q 021925          119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSL  197 (305)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  197 (305)
                                                      .++.  +++.|... -.++.+.++|..+.+.+.++...    ..-..+
T Consensus        91 --------------------------------Git~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~----~eG~gl  132 (262)
T 3nol_A           91 --------------------------------GISD--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD----GEGWGL  132 (262)
T ss_dssp             --------------------------------EEEE--ETTEEEEEESSSSEEEEEETTTCCEEEEEECS----SCCCCE
T ss_pred             --------------------------------EEEE--eCCEEEEEEeeCCEEEEEECccCcEEEEEECC----CCceEE
Confidence                                            0111  23334433 35789999999999999998732    111233


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee---CCC---eeEEEecCCCCcEEEee
Q 021925          198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERP---VNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~---v~~~~~~~~~~~l~~~~  251 (305)
                        +++++.|+.+..+++|.++|..+.+.+..+..   +.+   ++.+.|. +|+ |.++.
T Consensus       133 --t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~  188 (262)
T 3nol_A          133 --THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANV  188 (262)
T ss_dssp             --EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred             --ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEE
Confidence              35677777777788999999999999888772   223   4557776 565 44443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.55  E-value=4.8e-05  Score=65.34  Aligned_cols=230  Identities=14%  Similarity=0.101  Sum_probs=130.9

Q ss_pred             CCEEEEeeCCCceEEEEcCCCeeeEEecCCCc----ceE-EEEEcC---CCc-EEEEEe------CCCcEEEEecCCCCe
Q 021925           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----AVW-CCDVSR---DSM-TLITGS------ADQTAKLWNVETGAQ   86 (305)
Q Consensus        22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~-~i~~~~---~~~-~l~s~~------~dg~v~vwd~~~~~~   86 (305)
                      +..++.++.|+.|.-+|..+|+.+.+......    .+. ......   +++ .+++++      .+|.|.-+|.++++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45677788899999999999998877653221    111 111111   233 555654      378999999999999


Q ss_pred             eEEEeeCCCc------------------------------------------eEEEEecCCceEEEeCCccee-------
Q 021925           87 LFTFNFDSPA------------------------------------------RSVDFAVGDKLAVITTDPFME-------  117 (305)
Q Consensus        87 ~~~~~~~~~v------------------------------------------~~~~~~~~~~~~~~~~~~~~~-------  117 (305)
                      +.........                                          ..+++.|....++++......       
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            8876532100                                          124555555555554421100       


Q ss_pred             ------------eeeeEEEEEeecccCCCCCceEEEEec--cCC----CeeE-EEEc---CCCC---EEEEeeCCCcEEE
Q 021925          118 ------------LNSAIHVKRIARDPADQGGESVLILKG--PQG----RINR-AVWG---PLNR---TIISAGEDAIVRI  172 (305)
Q Consensus       118 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~i~~-~~~~---~~~~---~l~~~~~dg~i~i  172 (305)
                                  ....+...+      ...++..-.++.  |..    .+.. +...   .+|+   .++.++.+|.+++
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD------~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~  350 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVD------PSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYV  350 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEEC------TTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEE
T ss_pred             cCCCcccccCCcccceEEEEe------CCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEE
Confidence                        001111111      123344433322  211    0111 1122   4564   6788999999999


Q ss_pred             EeCCCCcEeeeeccccCC----------ccc--------------------------------eEEEEEcCCCCEEEEEe
Q 021925          173 WDTETGKLLKESDKETGH----------KKT--------------------------------ITSLAKAADGSHFLTGS  210 (305)
Q Consensus       173 wd~~~~~~~~~~~~~~~~----------~~~--------------------------------v~~~~~~~~~~~l~~~~  210 (305)
                      +|.++++.+.........          ..+                                -..++++|+...+++..
T Consensus       351 lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~  430 (582)
T 1flg_A          351 VDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPA  430 (582)
T ss_dssp             EETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEE
T ss_pred             EECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEec
Confidence            999999988665421100          000                                01345666555554432


Q ss_pred             ---------------------------------CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925          211 ---------------------------------LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKF  257 (305)
Q Consensus       211 ---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~  257 (305)
                                                       .+|.|..||+.+++.+.+.....++..-.....+.++++|+.++...
T Consensus       431 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~  510 (582)
T 1flg_A          431 NHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFK  510 (582)
T ss_dssp             ECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEE
T ss_pred             hhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEE
Confidence                                             26889999999999998887655554434444566788888777643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.54  E-value=3.4e-05  Score=60.30  Aligned_cols=179  Identities=6%  Similarity=0.078  Sum_probs=106.6

Q ss_pred             eEecccccceEEEEEcCCCCEEEEee-CCCceEEEEcCCCeeeEE-ecC----CC--cceEEEEE---cCCCcEEEEEe-
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGT-YRG----HN--GAVWCCDV---SRDSMTLITGS-   71 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~~~~~~-~~~----~~--~~v~~i~~---~~~~~~l~s~~-   71 (305)
                      +.+.+..---.+++|++....+..++ ..++|..|+...+..... +.+    ..  ..+..+.|   .|+++++++.. 
T Consensus         6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~   85 (334)
T 2p9w_A            6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN   85 (334)
T ss_dssp             EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred             EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence            44555556667899988555555555 789999999875543332 222    11  14689999   68877777543 


Q ss_pred             ------------CCCcEEEEecC---CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCC
Q 021925           72 ------------ADQTAKLWNVE---TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG  136 (305)
Q Consensus        72 ------------~dg~v~vwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (305)
                                  .+..|..+|+.   +++.+...........                                      
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~--------------------------------------  127 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDE--------------------------------------  127 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHH--------------------------------------
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccc--------------------------------------
Confidence                        25678888888   7776655441100000                                      


Q ss_pred             ceEEEEec-cCCCeeEEEEcCCCCEEEEeeCC-CcEEEEeCCCCcEeeeec-cc--cCCccceEEEEEcCCCCEEEEEeC
Q 021925          137 ESVLILKG-PQGRINRAVWGPLNRTIISAGED-AIVRIWDTETGKLLKESD-KE--TGHKKTITSLAKAADGSHFLTGSL  211 (305)
Q Consensus       137 ~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~~  211 (305)
                        .+...+ .......++..++|+..++++.. +.|...+.... .+..+. ..  .......+.|+++|+|+.|++...
T Consensus       128 --~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          128 --FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             --HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             --ccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence              000000 01124556667777766666666 66666665432 222111 00  112334678999999998888877


Q ss_pred             CCeEEEEEcCCc
Q 021925          212 DKSAKLWDARTL  223 (305)
Q Consensus       212 dg~i~iwd~~~~  223 (305)
                      .|.+..+|+++.
T Consensus       205 ~g~L~~fD~~~p  216 (334)
T 2p9w_A          205 PRALTAFDVSKP  216 (334)
T ss_dssp             SSSEEEEECSSS
T ss_pred             CCeEEEEcCCCC
Confidence            999999998843

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.54  E-value=1.8e-05  Score=70.33  Aligned_cols=193  Identities=6%  Similarity=-0.027  Sum_probs=103.5

Q ss_pred             ceEEEEEc-CCCcEEEEEeC-CC----cEEEEecCCC-CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEE
Q 021925           54 AVWCCDVS-RDSMTLITGSA-DQ----TAKLWNVETG-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR  126 (305)
Q Consensus        54 ~v~~i~~~-~~~~~l~s~~~-dg----~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (305)
                      .+...+|| |||++|+.+.. +|    +|+++|+.++ +.+.. ........+.|+|+++.++............+..+.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            67889999 99998875433 33    4999999988 63211 111124578899999777665432111111222222


Q ss_pred             eecccCCCCCceEEEEe-ccCCCeeEEEEcCCCCEEEEeeC---CCcEEEEeCCCCc-Ee--eeeccccCCccceEEEEE
Q 021925          127 IARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGE---DAIVRIWDTETGK-LL--KESDKETGHKKTITSLAK  199 (305)
Q Consensus       127 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~~~~~~~~~v~~~~~  199 (305)
                      +  ...  ..+....+. ........+.|+|||++|+..+.   ...|+++|+.++. ..  ..+..  .......++.|
T Consensus       254 l--gt~--~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~s~~~  327 (751)
T 2xe4_A          254 M--GKL--QSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP--REKGVRYDVQM  327 (751)
T ss_dssp             T--TSC--GGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC--CCTTCCEEEEE
T ss_pred             C--CCC--chhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec--CCCCceEEEee
Confidence            2  110  111122332 22334567899999998886553   4578899998752 22  33321  23344555555


Q ss_pred             cCCCCEEEEEeCC----CeEEEEEcCCc-eEEE-EEeeCC--CeeEEEecCCCCcEEEe-eCCcE
Q 021925          200 AADGSHFLTGSLD----KSAKLWDARTL-ELIK-TYVTER--PVNAVTMSPLLDHVCIG-EPQTI  255 (305)
Q Consensus       200 ~~~~~~l~~~~~d----g~i~iwd~~~~-~~~~-~~~~~~--~v~~~~~~~~~~~l~~~-~~~~~  255 (305)
                      +.++.+++....+    ..|..+|+.++ +... .+.+..  .+..+.+.  ++.|+.. ..++.
T Consensus       328 ~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~  390 (751)
T 2xe4_A          328 HGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGL  390 (751)
T ss_dssp             ETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTE
T ss_pred             eeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCE
Confidence            5444444444443    36777787652 2222 233333  34444444  4555544 44444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.50  E-value=3.3e-05  Score=58.33  Aligned_cols=146  Identities=6%  Similarity=-0.016  Sum_probs=96.4

Q ss_pred             eeeEEecCCCc--ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeee
Q 021925           43 ERLGTYRGHNG--AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS  120 (305)
Q Consensus        43 ~~~~~~~~~~~--~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  120 (305)
                      +.+.++. |..  -...+.|+ ++.+.++.+.+|.|+++|+++++.+..+ .+.....                      
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~Fg----------------------   98 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFA----------------------   98 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCE----------------------
T ss_pred             EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcce----------------------
Confidence            4455554 543  35789997 4667788888999999999999887665 3322111                      


Q ss_pred             eEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc
Q 021925          121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA  200 (305)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  200 (305)
                                                   ..++... ++..++.-.++.+.+||..+.+.+.++...    ..-..++  
T Consensus        99 -----------------------------eGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~----~eGwGLt--  142 (268)
T 3nok_A           99 -----------------------------EGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYS----GEGWGLC--  142 (268)
T ss_dssp             -----------------------------EEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECS----SCCCCEE--
T ss_pred             -----------------------------eEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCC----CceeEEe--
Confidence                                         0122221 223333446899999999999999998732    2223343  


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceEEEEEee---CC---CeeEEEecCCCCcEEEee
Q 021925          201 ADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ER---PVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       201 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~---~v~~~~~~~~~~~l~~~~  251 (305)
                      ++++.|+.+..+++|.++|..+.+.+.++..   +.   .++.+.|. +|+ |.++.
T Consensus       143 ~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanv  197 (268)
T 3nok_A          143 YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANI  197 (268)
T ss_dssp             EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred             cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEE
Confidence            5677887777799999999999999888872   11   34667776 665 44443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.43  E-value=0.00027  Score=63.13  Aligned_cols=224  Identities=10%  Similarity=0.029  Sum_probs=133.9

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEe---cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~   87 (305)
                      ..|.++...++|++. .|+.++-|..++..+++.....   ......|.++...+++.+. .|+.++-|..+|.++++..
T Consensus       363 ~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             SCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEE
T ss_pred             cceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEE
Confidence            568999988888654 4565666888887654332111   1234679999988777654 4666667899998766432


Q ss_pred             EEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec-----cCCCeeEEEEcCCC
Q 021925           88 FTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-----PQGRINRAVWGPLN  158 (305)
Q Consensus        88 ~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~  158 (305)
                       .+.    ....+.++...+++.+.+....+...       .+...      .+.......     ....|.++...++|
T Consensus       441 -~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~-------~~~~~------~~~~~~~~~~~~~~~~~~i~~i~~d~~g  506 (781)
T 3v9f_A          441 -IIELEKNELLDVRVFYEDKNKKIWIGTHAGVFV-------IDLAS------KKVIHHYDTSNSQLLENFVRSIAQDSEG  506 (781)
T ss_dssp             -ECCSTTTCCCCEEEEEECTTSEEEEEETTEEEE-------EESSS------SSCCEEECTTTSSCSCSCEEEEEECTTC
T ss_pred             -EeccCCCCCCeEEEEEECCCCCEEEEECCceEE-------EeCCC------CeEEecccCcccccccceeEEEEEcCCC
Confidence             232    23567777777777766665422111       11110      011111111     13568889888888


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeecccc-CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-----eC
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDKET-GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-----TE  232 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~  232 (305)
                      +.. .|+.++-+..+|..+++.. .+.... -....|.++...++|.+.++ +.+|-+..||..+++. ..+.     ..
T Consensus       507 ~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~-~~~~~~~gl~~  582 (781)
T 3v9f_A          507 RFW-IGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDY-QVFQRKEGLPN  582 (781)
T ss_dssp             CEE-EEESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCC-EEECGGGTCSC
T ss_pred             CEE-EEEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcE-EEccccCCCCC
Confidence            754 4555445888998766533 332111 12457899999888875544 4467558898876653 2232     22


Q ss_pred             CCeeEEEecCCCCcEEEeeCCcE
Q 021925          233 RPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       233 ~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ..|.++...++|++.+ ++..+.
T Consensus       583 ~~i~~i~~d~~g~lW~-~t~~Gl  604 (781)
T 3v9f_A          583 THIRAISEDKNGNIWA-STNTGI  604 (781)
T ss_dssp             CCCCEEEECSSSCEEE-ECSSCE
T ss_pred             ceEEEEEECCCCCEEE-EcCCce
Confidence            4578888888886544 445554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.43  E-value=0.00044  Score=56.51  Aligned_cols=211  Identities=12%  Similarity=-0.025  Sum_probs=125.3

Q ss_pred             cccceEEEEEcCCCCEEEEe-eCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecC
Q 021925            9 HERPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~   82 (305)
                      ....+..++|++.+..|+-+ ...+.|+.+++...    .....+.........+++.+ .+++.++-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34567889999865555544 45678888887642    22333333445678899988 45555555667889999987


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      .......+. .-.....+++.|.+..++.+....   ...  ++.....    ...........-.....++++|++..|
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~---~~~--I~~~~~d----G~~~~~~~~~~l~~P~glavd~~~~~l  260 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---PAK--IKKGGLN----GVDIYSLVTENIQWPNGITLDLLSGRL  260 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS---SCC--EEEEETT----SCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCC---CCE--EEEEeCC----CCccEEEEECCCCceEEEEEEeCCCEE
Confidence            665544444 344578999999666555543210   011  2222111    111122223334567889999988777


Q ss_pred             EEee-CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          162 ISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       162 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      +.+. ..+.|..+|+.... .+.+............+++. .+.++.+-...+.|..+|..+++.+..+.
T Consensus       261 Y~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          261 YWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            7665 46789999986433 23332111122345566763 34455666667889999988887776665

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.40  E-value=0.00044  Score=55.45  Aligned_cols=231  Identities=10%  Similarity=0.031  Sum_probs=121.9

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee--eEEec---CCCcceEEEEEcCC---CcEEEEEeC-C-----Cc
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYR---GHNGAVWCCDVSRD---SMTLITGSA-D-----QT   75 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~---~~~~~v~~i~~~~~---~~~l~s~~~-d-----g~   75 (305)
                      -.....++|.|+|+++++ ..+|.|++++  +++.  +..+.   ........|+|+|+   +..|+.+.. .     +.
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            345679999999985554 5679999998  4442  22221   12356899999998   445544433 2     57


Q ss_pred             EEEEecCCCCe---eEEEe-eC------CCceEEEEecCCceEEEeCCcceee------eeeEEEEEeecccCCCC----
Q 021925           76 AKLWNVETGAQ---LFTFN-FD------SPARSVDFAVGDKLAVITTDPFMEL------NSAIHVKRIARDPADQG----  135 (305)
Q Consensus        76 v~vwd~~~~~~---~~~~~-~~------~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----  135 (305)
                      |..++...+..   ...+. .+      .....++|.|++.+.++..+.....      .....+..+........    
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            88888764421   11111 12      2346899999997666544321110      01123333322110000    


Q ss_pred             -----CceEEEEeccCCCeeEEEEcC-CCCEEEEeeCCCc--------EEEEeCCCCc------------------Eeee
Q 021925          136 -----GESVLILKGPQGRINRAVWGP-LNRTIISAGEDAI--------VRIWDTETGK------------------LLKE  183 (305)
Q Consensus       136 -----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------i~iwd~~~~~------------------~~~~  183 (305)
                           ........++ .....++|+| +++++++-.....        |.+.  ..+.                  ++..
T Consensus       187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~  263 (352)
T 2ism_A          187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYF  263 (352)
T ss_dssp             TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred             cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCeEe
Confidence                 0111111222 3356789999 5565444332222        3332  2221                  1111


Q ss_pred             eccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE------EEEE-eeCCCeeEEEecCCCCcEEEee
Q 021925          184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL------IKTY-VTERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       184 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~-~~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      +    .+......++| .+|.++++.-..+.|...++.....      ...+ .....+..+++.|||.+.++..
T Consensus       264 ~----~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          264 W----PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             C----TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             c----CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            1    12234567777 4666666666677888887764321      1222 2345789999999998766654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.40  E-value=0.0004  Score=54.78  Aligned_cols=208  Identities=13%  Similarity=-0.031  Sum_probs=121.3

Q ss_pred             cceEEEEEcCCCCEEE-EeeCCCceEEEEcCC----CeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCCC
Q 021925           11 RPLTYLKYNKDGDLLF-SCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETG   84 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~~   84 (305)
                      ..+.+++|++.+..|+ +-..++.|..++...    ......+...-.....+++.+.+ +..++-...+.|.+.++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            4467899998655554 445568899998775    22222233222456788998744 44455566789999998755


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCCeeEEEEcCCCCEEE
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~  162 (305)
                      ....... .......+++.|.+..++.+....     ...++....     .+.....+ ...-.....++++|+++.|+
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~-----~~~I~~~~~-----dG~~~~~~~~~~~~~P~gla~d~~~~~lY  179 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PAKIKKGGL-----NGVDIYSLVTENIQWPNGITLDLLSGRLY  179 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----SCEEEEEET-----TSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCC-----CCeEEEEcC-----CCCCeEEEEECCCCCceEEEEeccCCEEE
Confidence            4433333 335678999998665555443211     012222211     11222222 22345678899999877776


Q ss_pred             Eee-CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          163 SAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       163 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      .+. ..+.|..+|+... ..+.+............+++. .+.++++-...+.|..+|..+++.+..+.
T Consensus       180 ~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          180 WVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            555 4679999998743 233332111122345677775 45556666677899999987777666654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=0.0014  Score=58.63  Aligned_cols=230  Identities=10%  Similarity=-0.061  Sum_probs=135.8

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec--------------CCCcceEEEEEcCCCcEEEEEeCCCc
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--------------GHNGAVWCCDVSRDSMTLITGSADQT   75 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~--------------~~~~~v~~i~~~~~~~~l~s~~~dg~   75 (305)
                      ...|.++...++|.+. .|+..+-|.+++..+++......              .....|.++...++|. |-.|+.++-
T Consensus       257 ~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred             CceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence            3568899888888644 45664668888877654322111              1345799999988885 556676677


Q ss_pred             EEEEecCCCCeeEEEe----------eCCCceEEEEecCCceEEEeCCccee-eeeeEEEEEeecccCCCCCceEEEEec
Q 021925           76 AKLWNVETGAQLFTFN----------FDSPARSVDFAVGDKLAVITTDPFME-LNSAIHVKRIARDPADQGGESVLILKG  144 (305)
Q Consensus        76 v~vwd~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (305)
                      |..++..+........          ....|.++...+++.+.+...+..+. +........  ....        ....
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~--~~~~--------~~~~  404 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAI--YNKE--------NREL  404 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEE--CC-------------C
T ss_pred             EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEE--EccC--------CCCC
Confidence            9999877654332211          23457788777777766665333222 221111110  0000        0012


Q ss_pred             cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  224 (305)
                      ....|.++...++++ |..|+.++-+..+|.++++... +.........|.++...+++.+ ..|+. +-+..+|..+++
T Consensus       405 ~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          405 LSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKK  480 (781)
T ss_dssp             CCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSS
T ss_pred             CCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCe
Confidence            346788888888776 4456766779999987765433 2211123467899998888764 44555 559999988765


Q ss_pred             EEEEEe-e-----CCCeeEEEecCCCCcEEEeeCCcE
Q 021925          225 LIKTYV-T-----ERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       225 ~~~~~~-~-----~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ...... .     ...|.++...++|++.+.....+.
T Consensus       481 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl  517 (781)
T 3v9f_A          481 VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGV  517 (781)
T ss_dssp             CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCE
T ss_pred             EEecccCcccccccceeEEEEEcCCCCEEEEEcCCCE
Confidence            433222 1     356889999998876554433453

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.32  E-value=0.00011  Score=55.04  Aligned_cols=137  Identities=13%  Similarity=0.172  Sum_probs=90.2

Q ss_pred             EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEec
Q 021925           24 LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV  103 (305)
Q Consensus        24 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~  103 (305)
                      .......++.+.++|..+.+.+.++...... ..++  ++++.|+.+..++.|.++|.++.+.+.++.....-       
T Consensus        77 ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g-------  146 (243)
T 3mbr_X           77 LIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG-------  146 (243)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT-------
T ss_pred             EEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC-------
Confidence            3344456889999999999999998743322 3444  56767776667899999999999887766521100       


Q ss_pred             CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeee
Q 021925          104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE  183 (305)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  183 (305)
                                                       .       .-..++.+.+. +|+..+..-.+..|.+.|.++++.+..
T Consensus       147 ---------------------------------~-------~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~  185 (243)
T 3mbr_X          147 ---------------------------------R-------PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAW  185 (243)
T ss_dssp             ---------------------------------E-------ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEE
T ss_pred             ---------------------------------c-------ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEE
Confidence                                             0       00122334443 455444444677999999999998887


Q ss_pred             ecccc----------CCccceEEEEEcCCCCEEEEEeC
Q 021925          184 SDKET----------GHKKTITSLAKAADGSHFLTGSL  211 (305)
Q Consensus       184 ~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~  211 (305)
                      +....          ......+.++++|+++.|++.+.
T Consensus       186 idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          186 IDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            65321          12346789999998877766663

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.24  E-value=0.0014  Score=54.16  Aligned_cols=231  Identities=9%  Similarity=0.002  Sum_probs=124.4

Q ss_pred             cceEEEEEcCC--CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---Cc-EEEEecCCC
Q 021925           11 RPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QT-AKLWNVETG   84 (305)
Q Consensus        11 ~~v~~~~~~~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~-v~vwd~~~~   84 (305)
                      .....++|+|+  +..|+.+...+.|+.++..+++...... .......++++++|+++++....   .. +...+...+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence            34678999984  3345444444899999988777654433 44568999999999944443321   11 333333222


Q ss_pred             Ce-eEEEeeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCce-EEEEe-ccCCCeeEEEEcCCCCE
Q 021925           85 AQ-LFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGES-VLILK-GPQGRINRAVWGPLNRT  160 (305)
Q Consensus        85 ~~-~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~  160 (305)
                      .. ...+........+++.| ++.+.++....     .  .++.+...    .+.. ..... +.......++++|++++
T Consensus       218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~-----~--~V~~~d~~----~g~~~~~~~~~~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHH-----A--MISSYDPA----TGTLTEEEVMMDTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             TCCEEEEEECSSBCCCEECTTTCCEEECBTTC-----S--EEEEECTT----TCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred             eeccccccccCCCCEEEEeCCCCeEEEEECCC-----C--EEEEEECC----CCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence            11 12223345567788888 45544443221     1  12222111    1111 11111 11222346999999995


Q ss_pred             EEEe-eCCCcEEEEeCCC--CcEe--eeecc---cc---------CCccceEEEEE---------cCCCCEEEEEeCCCe
Q 021925          161 IISA-GEDAIVRIWDTET--GKLL--KESDK---ET---------GHKKTITSLAK---------AADGSHFLTGSLDKS  214 (305)
Q Consensus       161 l~~~-~~dg~i~iwd~~~--~~~~--~~~~~---~~---------~~~~~v~~~~~---------~~~~~~l~~~~~dg~  214 (305)
                      |+.+ ...+.|+.+|...  +...  ..+..   ..         ..-.....+++         .++|.++++-...++
T Consensus       287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~  366 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT  366 (433)
T ss_dssp             EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred             EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence            5555 4568899988652  3211  11110   00         01134677898         777777777777889


Q ss_pred             EEEEEcCCceEEEEEeeC------------------CCeeEEEecCCCCcEEEeeCCc
Q 021925          215 AKLWDARTLELIKTYVTE------------------RPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       215 i~iwd~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      |+.++. ++.........                  .....++++|....|+++...+
T Consensus       367 I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n  423 (433)
T 4hw6_A          367 VRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN  423 (433)
T ss_dssp             EEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             EEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence            999985 55443322110                  1257889994444555554433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.23  E-value=0.00015  Score=59.91  Aligned_cols=160  Identities=12%  Similarity=-0.014  Sum_probs=98.0

Q ss_pred             ceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC
Q 021925           54 AVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA  132 (305)
Q Consensus        54 ~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (305)
                      ....++++| ++..|+.+...+.|+.+|+++++.............++++++++.++++..........  +..+.... 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~--v~~~~~~g-  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPN--NYILTRES-  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEE--EEEEEGGG-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccce--EEEEeCCC-
Confidence            357889998 45566666655889999988766555445556688999999998665554311111111  11111111 


Q ss_pred             CCCCceEEEEeccCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEE-EEEe
Q 021925          133 DQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGS  210 (305)
Q Consensus       133 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~  210 (305)
                        .......+. .......++++| ++..+++-..++.|..+|...+........  +.......++|+|+|++| ++-.
T Consensus       215 --~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~--~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          215 --GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI--QDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             --TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC--SSSSCCEEEEECTTSSEEEEEET
T ss_pred             --ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc--CCCCcceeEEEcCCCCEEEEEEC
Confidence              111111222 234467789999 666666666678999999986654222221  122457789999999955 4555


Q ss_pred             CCCeEEEEEcC
Q 021925          211 LDKSAKLWDAR  221 (305)
Q Consensus       211 ~dg~i~iwd~~  221 (305)
                      ..+.|..++..
T Consensus       290 ~~~~I~~~~~d  300 (430)
T 3tc9_A          290 NQHYILRSDYD  300 (430)
T ss_dssp             TTTEEEEEEEE
T ss_pred             CCCEEEEEeCC
Confidence            67889998865

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.19  E-value=0.00074  Score=55.79  Aligned_cols=205  Identities=11%  Similarity=0.069  Sum_probs=107.6

Q ss_pred             cccceEEEEEcCCCCEEEEeeCC---Cc-eEEEEcCCCee-eEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecC
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKD---HT-PTVWFADNGER-LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~d---g~-v~iw~~~~~~~-~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .......++++++|+++++....   .. +...+...+.. ...+. .-.....++++| ++.+.++-..++.|..+|..
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            34458899999999944443321   11 22233221111 01121 123456788999 66655565567889999988


Q ss_pred             CCCeeEEE-ee--CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec---------------
Q 021925           83 TGAQLFTF-NF--DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG---------------  144 (305)
Q Consensus        83 ~~~~~~~~-~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  144 (305)
                      ++.....+ ..  ......++++|+++.++++....    ..+...+...  ..........+.+               
T Consensus       259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~----~~I~~~~~d~--~~~~~~~~~~~ag~~g~~g~~dg~~~~a  332 (433)
T 4hw6_A          259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK----HCIYRVDYNR--ETGKLAVPYIVCGQHSSPGWVDGMGTGA  332 (433)
T ss_dssp             TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT----TEEEEEEBCT--TTCCBCCCEEEEECTTCCCCBCEEGGGS
T ss_pred             CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC----CEEEEEeCCC--CCcccCcEEEEEecCCCCccCCCcccce
Confidence            77663332 22  22234699999998665554321    1122211110  0000000011111               


Q ss_pred             cCCCeeEEEE---------cCCCCEEEEeeCCCcEEEEeCCCCcEeeeecccc--------------CCccceEEEEEc-
Q 021925          145 PQGRINRAVW---------GPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--------------GHKKTITSLAKA-  200 (305)
Q Consensus       145 ~~~~i~~~~~---------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~~~~v~~~~~~-  200 (305)
                      .-.....+++         .+++++.++-...+.|+.++. ++..........              ..-.....++++ 
T Consensus       333 ~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~  411 (433)
T 4hw6_A          333 RLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM  411 (433)
T ss_dssp             BCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred             EEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence            1224567888         666776666666788999985 454332221100              011246788888 


Q ss_pred             CCCCEEEEEeCCCeEEEEEcC
Q 021925          201 ADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       201 ~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      ++|.++++-...++|+.++++
T Consensus       412 ~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          412 KRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEecC
Confidence            566666665567778777754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.18  E-value=0.0014  Score=52.00  Aligned_cols=224  Identities=8%  Similarity=0.008  Sum_probs=121.3

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec---CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR---GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~   86 (305)
                      ...+.++.+++ ++.++ ++.+|.|.. ..+.++.-....   .+.+.+..+.+.+++..++.+ .+|.|.. ....++.
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence            44688999986 44444 455664433 223343322222   234567888887777666554 4564422 1223433


Q ss_pred             eEEEe--eCCCceEEEEecCCceEEEeCCcceeeeee--EEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           87 LFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSA--IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        87 ~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      -....  ....+..+.+.+++.+++++..+.+.....  ...|           +.  .-......+..+.+.++++.+ 
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW-----------~~--~~~~~~~~~~~~~~~~~g~~~-  219 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAW-----------EP--HNRTTSRRLHNMGFTPDGRLW-  219 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSC-----------EE--EECCSSSCEEEEEECTTSCEE-
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCce-----------eE--CCCCCCCccceeEECCCCCEE-
Confidence            33332  344677888888888877765432221110  0001           11  112344567888899988755 


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccc-cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe----eCCCeeE
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNA  237 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~  237 (305)
                      .++.+|.+++.+...++.-..+... ......+..+.+.+++..++++. +|.+ .+....++.-..+.    ....+.+
T Consensus       220 ~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~  297 (327)
T 2xbg_A          220 MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYK  297 (327)
T ss_dssp             EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCE
T ss_pred             EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEE
Confidence            4556788877643323332222211 01234588899998877666554 7766 34445454433333    2356788


Q ss_pred             EEecCCCCcEEEeeCCcE
Q 021925          238 VTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~  255 (305)
                      +.|.++++ +++++.++.
T Consensus       298 v~~~~~~~-~~~~G~~G~  314 (327)
T 2xbg_A          298 ILFFSPDQ-GFILGQKGI  314 (327)
T ss_dssp             EEEEETTE-EEEECSTTE
T ss_pred             EEEECCCc-eEEEcCCce
Confidence            99986665 444555664

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.18  E-value=0.0014  Score=51.74  Aligned_cols=206  Identities=10%  Similarity=-0.007  Sum_probs=119.6

Q ss_pred             ceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCeee-EEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925           12 PLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus        12 ~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      .+.+++|++.+. +..+-...+.|..++...+... ..+...-.....+++.+ +++..++-...+.|.+.+++......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            456788888544 4445455678888887655321 12222223467788887 44455555567889999987544333


Q ss_pred             EE-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-C
Q 021925           89 TF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-E  166 (305)
Q Consensus        89 ~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  166 (305)
                      .. ........+++.|.+..++.+...     ....++.....    ...........-...+.++++|+++.|+.+. .
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~-----~~~~I~r~~~d----G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~  186 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWG-----EVPKIERAGMD----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK  186 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECS-----SSCEEEEEETT----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecC-----CCCEEEEEEcC----CCCeEEEEECCCCCccEEEEeccCCEEEEEECC
Confidence            33 234567889999865555554321     01122222211    1111112222334568899999777666554 5


Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      .+.|..+|+.... .+.+..  ........+++.. +..+.+-...+.|..++..+++....+.
T Consensus       187 ~~~I~~~d~dG~~-~~~~~~--~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          187 LNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TTEEEEEETTSCS-CEEEEC--SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEcCCCCc-eEEEec--CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            6889999987433 222221  2234456677753 3455566667899999998887666655

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.18  E-value=0.0014  Score=51.77  Aligned_cols=199  Identities=17%  Similarity=0.270  Sum_probs=122.9

Q ss_pred             CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC----Cc---EEEEE-eC--CCcEEEEecC--CCCeeE
Q 021925           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD----SM---TLITG-SA--DQTAKLWNVE--TGAQLF   88 (305)
Q Consensus        21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~----~~---~l~s~-~~--dg~v~vwd~~--~~~~~~   88 (305)
                      ....++.....+-+.+||+ +|+.+..+..  +.++.+..-|+    |+   ++++. -.  +++|.+|++.  ++ .+.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-cee
Confidence            3456776777889999999 7888888864  56777777662    22   22333 33  5789999773  33 344


Q ss_pred             EEe-------eC-CCceEEEE--ecC-Cc-eEEEeCCcceeeeeeEEEEEeecccCC-CCCceEEEEeccCCCeeEEEEc
Q 021925           89 TFN-------FD-SPARSVDF--AVG-DK-LAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWG  155 (305)
Q Consensus        89 ~~~-------~~-~~v~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~  155 (305)
                      .+.       .. ..+..+++  ++. +. ++++...     .+.+..+.+...... ...+.++.+.. .+.+..+...
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k-----~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvD  188 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK-----EGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAAD  188 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS-----SSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC-----CCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEc
Confidence            442       11 45666776  563 43 3444443     234444444322111 12344455544 3578889999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCC-----CCcEeeeeccccCCccceEEEEE--cCCCC-EEEEEe-CCCeEEEEEcC-CceE
Q 021925          156 PLNRTIISAGEDAIVRIWDTE-----TGKLLKESDKETGHKKTITSLAK--AADGS-HFLTGS-LDKSAKLWDAR-TLEL  225 (305)
Q Consensus       156 ~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~-~~~~  225 (305)
                      +....|+.+-++.-|..+|.+     +++.+..+.. ......+..|++  .++++ +|++++ .+++..+||.+ +.+.
T Consensus       189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~  267 (355)
T 3amr_A          189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY  267 (355)
T ss_dssp             TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred             CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence            999999999998777777855     3445544421 122346788887  45555 565555 67899999997 6788


Q ss_pred             EEEEe
Q 021925          226 IKTYV  230 (305)
Q Consensus       226 ~~~~~  230 (305)
                      +..|.
T Consensus       268 vg~f~  272 (355)
T 3amr_A          268 VADFR  272 (355)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88876

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.17  E-value=0.0014  Score=51.39  Aligned_cols=189  Identities=10%  Similarity=-0.020  Sum_probs=105.9

Q ss_pred             cceEEEEEcCCCCEEEEeeCCC--ceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe-
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ-   86 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~-   86 (305)
                      +.+..++++++|+++++.....  .|..++..+++....... .......++..+++..+++-..++.|..+|..+++. 
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            4578899999999766654333  366667677765433221 222345556566655555555688898998765432 


Q ss_pred             eEEEee--------C--CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           87 LFTFNF--------D--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        87 ~~~~~~--------~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      +.....        .  .....+  ++++..++++...    ...+...+........   ....+.. ......+++++
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~----~~~I~~~~~~~~g~~~---~~~~~~~-~~~P~gi~vd~  221 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE----KMLLLRIPVDSTDKPG---EPEIFVE-QTNIDDFAFDV  221 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT----TTEEEEEEBCTTSCBC---CCEEEEE-SCCCSSEEEBT
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC----CCEEEEEEeCCCCCCC---ccEEEec-cCCCCCeEECC
Confidence            211110        0  122334  7777666555421    1223333332110000   1111111 13466789999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCcEee--eeccccCCccceEEEEEc---CCCCEEEEEeCCC
Q 021925          157 LNRTIISAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLAKA---ADGSHFLTGSLDK  213 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg  213 (305)
                      +|++.++....+.|.++|.. ++...  .+.   ......++++|.   |+++.|+.++..+
T Consensus       222 dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~---~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          222 EGNLYGATHIYNSVVRIAPD-RSTTIIAQAE---QGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             TCCEEEECBTTCCEEEECTT-CCEEEEECGG---GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCCEEEEeCCCCeEEEECCC-CCEEEEeecc---cccCCceEEEEecccCCCCEEEEECCCC
Confidence            99887777778899999975 55432  232   223568899998   8877777666543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.16  E-value=0.0018  Score=52.43  Aligned_cols=236  Identities=9%  Similarity=-0.011  Sum_probs=151.0

Q ss_pred             EEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-CeeEEEe---
Q 021925           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFN---   91 (305)
Q Consensus        16 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~---   91 (305)
                      .-.+|..+.+|--. ..++.|+|+++.+.++.+.- .+.|.-=.|-.+. .|+-.+. ..|.-|+++.. .+++.+.   
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~lVT~-taVyHWsi~~~s~P~kvFdR~~  146 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHS  146 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEEEECS-SEEEEEESSSSCCCEEEEECCG
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEEEEcC-CeeEEecccCCCCchhheecch
Confidence            44678777777655 67999999999999888874 4567777776544 4444443 57999999743 4555555   


Q ss_pred             --eCCCceEEEEecCCceEEEeCC--cceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC---CEEEEe
Q 021925           92 --FDSPARSVDFAVGDKLAVITTD--PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN---RTIISA  164 (305)
Q Consensus        92 --~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~  164 (305)
                        ....|..-..+++.++++..+-  ......+.+.++...+       +..+.+++|......+....+.   +.++.+
T Consensus       147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa  219 (494)
T 1bpo_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCFA  219 (494)
T ss_dssp             GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-------CCEEEECCSEEEEEEEECTTCSSEEEEEEEE
T ss_pred             hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-------cccchheeeeeeeEEEecCCCCCCceEEEEE
Confidence              2445666667778887775431  1113345555555432       4566778887666555544222   234444


Q ss_pred             eC---CCcEEEEeCCCC---c------EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-e
Q 021925          165 GE---DAIVRIWDTETG---K------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T  231 (305)
Q Consensus       165 ~~---dg~i~iwd~~~~---~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~  231 (305)
                      ..   .++++|.++...   .      .+..+........-..++..++....+..-+.-|.+.++|++++.++..-+ .
T Consensus       220 ~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs  299 (494)
T 1bpo_A          220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS  299 (494)
T ss_dssp             ECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc
Confidence            33   278999998543   1      111111222334556788899988899999999999999999999998877 5


Q ss_pred             CCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925          232 ERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY  262 (305)
Q Consensus       232 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (305)
                      ..+|-..+-+....-++.-...|....+.+.
T Consensus       300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred             CCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence            6666555555444445444566666555554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.15  E-value=0.0016  Score=51.48  Aligned_cols=176  Identities=12%  Similarity=0.163  Sum_probs=109.9

Q ss_pred             CcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecC----Cce--EEEeCCcceeeeeeEEEEEeecccCCCCCc
Q 021925           64 SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG----DKL--AVITTDPFMELNSAIHVKRIARDPADQGGE  137 (305)
Q Consensus        64 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (305)
                      ..+++...+.+-|.++|+ +++.+..+.. ..+..+...|+    ++.  ++.+++.. .-...+.+..+....     .
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~-~~~n~l~vf~iDp~~-----~  111 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRS-EGKNTIEIYAIDGKN-----G  111 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECS-TTCCEEEEEEECTTT-----C
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCC-CCCCeEEEEEECCCC-----C
Confidence            356776777888999999 7888888754 66777777773    221  22332211 002234444442111     1


Q ss_pred             eEEEEe-------ccCCCeeEEEE--cCC-CC-EEEEeeCCCcEEEEeCC-------CCcEeeeeccccCCccceEEEEE
Q 021925          138 SVLILK-------GPQGRINRAVW--GPL-NR-TIISAGEDAIVRIWDTE-------TGKLLKESDKETGHKKTITSLAK  199 (305)
Q Consensus       138 ~~~~~~-------~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~v~~~~~  199 (305)
                      .+..+.       .....+..++.  +|. ++ ++++...+|.+..|++.       +.+.++++.    ....+-.+..
T Consensus       112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~----lgsq~Egcvv  187 (355)
T 3amr_A          112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK----MNSQTEGMAA  187 (355)
T ss_dssp             CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE----CSSCEEEEEE
T ss_pred             ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec----CCCCcceEEE
Confidence            122221       11155666777  774 44 67788889999999983       335566665    4567888999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcC-----CceEEEEEee---CCCeeEEEe--cCCCC-cEEEee
Q 021925          200 AADGSHFLTGSLDKSAKLWDAR-----TLELIKTYVT---ERPVNAVTM--SPLLD-HVCIGE  251 (305)
Q Consensus       200 ~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~---~~~v~~~~~--~~~~~-~l~~~~  251 (305)
                      .+....|+.+-++.-|..++.+     +++.+..+..   ...+..+++  .++++ +|++++
T Consensus       188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs  250 (355)
T 3amr_A          188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS  250 (355)
T ss_dssp             ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence            9988899999999777777755     3456655532   246788887  56666 666665

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.13  E-value=7e-05  Score=65.79  Aligned_cols=220  Identities=12%  Similarity=-0.042  Sum_probs=121.0

Q ss_pred             cceEEEEEcCCCCEEEEe-eCCCceEEEEcCC----CeeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCC
Q 021925           11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      ..+..++|++.+..|+.+ ...+.|+.+++..    ......+.........|++.+. ++++++-...+.|.+.++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            346688999866666655 4467899998875    2222222222233567888764 444455455788999998755


Q ss_pred             CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      .....+. .......+++.|.+..++.+....   ...  ++.+..   ... ...............|+++|+++.|+.
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~---~~~--I~~~~~---dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~  556 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT---PAK--IKKGGL---NGV-DIYSLVTENIQWPNGITLDLLSGRLYW  556 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSS---SCC--EEBCCS---SSC-CCCEESCSSCSSCCCEEECTTTCCEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCC---CCe--EEEEeC---CCC-CeeEEEeCCCCCccEEEEeccCCEEEE
Confidence            4433333 234567888888666555543211   011  111110   000 111111222345678999998665554


Q ss_pred             e-eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee-CCCeeEEEec
Q 021925          164 A-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMS  241 (305)
Q Consensus       164 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~  241 (305)
                      + ...+.|..+|+.... .+.+............|++..+ .++++....+.|..+|..+++.+..+.. ...+..+++.
T Consensus       557 aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~  634 (699)
T 1n7d_A          557 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF  634 (699)
T ss_dssp             EETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred             EecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence            4 456789999986432 2222211111223344555544 4555666678999999988888877752 2234455443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.12  E-value=0.0019  Score=51.15  Aligned_cols=220  Identities=7%  Similarity=0.030  Sum_probs=120.8

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec----CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR----GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      ...+.++.+.+++..+++ +.+|.| +...+.++.-....    .....+.++.+.+ +..+ .++.++.|.. ....++
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~-~~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGW-IVGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEE-EEEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEE-EEECCCeEEE-ECCCCC
Confidence            457999999887777774 556654 33333343222221    1245789999986 4444 4455664443 223344


Q ss_pred             eeEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           86 QLFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        86 ~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      .-....    .+..+..+.+.+++..++.+..+.+.....            ....-..........+..+.+.|+++++
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~D------------gG~tW~~~~~~~~~~~~~~~~~~~~~~~  177 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKD------------SGKNWQALVQEAIGVMRNLNRSPSGEYV  177 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESS------------TTSSEEEEECSCCCCEEEEEECTTSCEE
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcC------------CCCCCEEeecCCCcceEEEEEcCCCcEE
Confidence            333322    223466777777777666654322111100            0111111223345568889999988877


Q ss_pred             EEeeCCCcEEEEeC--CCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee-----CCC
Q 021925          162 ISAGEDAIVRIWDT--ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERP  234 (305)
Q Consensus       162 ~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~  234 (305)
                      +.+...+..+-.|-  .+.+.+..     .....+..+.+.++++.+ .++.+|.+++.+...++.-..+..     ...
T Consensus       178 ~~g~~G~~~~S~d~gG~tW~~~~~-----~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~  251 (327)
T 2xbg_A          178 AVSSRGSFYSTWEPGQTAWEPHNR-----TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVG  251 (327)
T ss_dssp             EEETTSSEEEEECTTCSSCEEEEC-----CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSC
T ss_pred             EEECCCcEEEEeCCCCCceeECCC-----CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcc
Confidence            66644333333442  23333321     245678889999988755 455688888775333443333321     235


Q ss_pred             eeEEEecCCCCcEEEeeC
Q 021925          235 VNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       235 v~~~~~~~~~~~l~~~~~  252 (305)
                      +.++++.+++..++++..
T Consensus       252 ~~~v~~~~~~~~~~~g~~  269 (327)
T 2xbg_A          252 FLDLAYRTPNEVWLAGGA  269 (327)
T ss_dssp             EEEEEESSSSCEEEEEST
T ss_pred             eEEEEecCCCEEEEEeCC
Confidence            788999988877766553

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.09  E-value=0.0024  Score=51.15  Aligned_cols=212  Identities=8%  Similarity=-0.050  Sum_probs=120.8

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCCCCeeEEEe
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~   91 (305)
                      .+|.+..+++ .|+.+ ....|+..++........+.. ...+..++|++.+..|+ +-...+.|..+++..........
T Consensus        36 ~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  112 (349)
T 3v64_C           36 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  112 (349)
T ss_dssp             SCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             CcccccccCc-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence            4555555543 44433 345677777765554444443 34578999997555554 44557889999988665444333


Q ss_pred             -eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CC-C
Q 021925           92 -FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-ED-A  168 (305)
Q Consensus        92 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g  168 (305)
                       .......+++.+.+..++.+...    ...+...+..      .................++++|.+..|+... .. +
T Consensus       113 ~~~~~p~glavd~~~g~ly~~d~~----~~~I~~~~~d------G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~  182 (349)
T 3v64_C          113 TGLESPGGLAVDWVHDKLYWTDSG----TSRIEVANLD------GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP  182 (349)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETT----TTEEEEEETT------SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred             CCCCCccEEEEecCCCeEEEEcCC----CCeEEEEcCC------CCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCC
Confidence             22456788998755544444321    1122222211      1112222333445678999999766555444 44 7


Q ss_pred             cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceEEEEEe-eCCCeeEEEe
Q 021925          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYV-TERPVNAVTM  240 (305)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~  240 (305)
                      .|...++.... ...+..  ..-...+.++++|++..|..+ +..+.|..+|+........+. .......+++
T Consensus       183 ~I~r~~~dG~~-~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav  253 (349)
T 3v64_C          183 RIEASSMDGSG-RRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV  253 (349)
T ss_dssp             EEEEEETTSCS-CEESCC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred             EEEEEeCCCCC-cEEEEE--CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence            89999886433 222221  234467899999866666554 456789999987433222222 2334567777

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.05  E-value=0.0059  Score=54.32  Aligned_cols=210  Identities=12%  Similarity=-0.044  Sum_probs=120.2

Q ss_pred             ccceEEEEEcCCCCE-EEEeeCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCC
Q 021925           10 ERPLTYLKYNKDGDL-LFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVET   83 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~-l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~   83 (305)
                      ...+.+|+|++.... +++-...+.|+.+++...    .....+.........|++.+.++.| ++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            445678899885444 444455677888887642    2233333334556789998866544 4555678999999875


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      ......+. .-.....+++.|.+..++.+..+.     ...++....    ........+...-.....|++++.+..|+
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~-----~~~I~~~~~----dG~~~~~lv~~~l~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PAKIKKGGL----NGVDIYSLVTENIQWPNGITLDLLSGRLY  573 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----SCEEEEEET----TSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCC-----CCeEEEEec----CCCceEEEEeCCCCCceEEEEecCCCeEE
Confidence            55433333 334678999999765555543211     011222211    11122222333345688999998777776


Q ss_pred             Eee-CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          163 SAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       163 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      .+. ..+.|...|+........+. ....-.....|++.. +.++++-...+.|...|..+++.+..+.
T Consensus       574 waD~~~~~I~~~d~dG~~~~~v~~-~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          574 WVDSKLHSISSIDVNGGNRKTILE-DEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEE-CTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEeCCCCcEEEEecCCCceEEEec-CCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            664 45789999986443322222 111223345666643 3444555567889888887776665554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.03  E-value=0.003  Score=50.38  Aligned_cols=232  Identities=11%  Similarity=0.070  Sum_probs=126.4

Q ss_pred             EecccccceEEEEEcCCCCEEEEee------------CCCceEEEEcCC--Cee-eEEecC-----CCcceEEEEEcC--
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCA------------KDHTPTVWFADN--GER-LGTYRG-----HNGAVWCCDVSR--   62 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~------------~dg~v~iw~~~~--~~~-~~~~~~-----~~~~v~~i~~~~--   62 (305)
                      .+.+-.....++...|+|..+++++            .+|.|.++|..+  ++. ...+.+     ..-....+.+.+  
T Consensus        44 ~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~  123 (355)
T 3sre_A           44 LVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD  123 (355)
T ss_dssp             ECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred             EeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC
Confidence            3444233456777888886555542            689999999873  221 112222     123677888765  


Q ss_pred             CCc-EEEEE-eC--CCcEEEEecCCCCe-eE---EEee--CCCceEEEEecCCceEEEeCCc----ceee------eeeE
Q 021925           63 DSM-TLITG-SA--DQTAKLWNVETGAQ-LF---TFNF--DSPARSVDFAVGDKLAVITTDP----FMEL------NSAI  122 (305)
Q Consensus        63 ~~~-~l~s~-~~--dg~v~vwd~~~~~~-~~---~~~~--~~~v~~~~~~~~~~~~~~~~~~----~~~~------~~~~  122 (305)
                      ++. +|+.+ ..  +.++.+|+++.+.. ..   .+..  -.....+.+.+++.+.+....-    ....      ....
T Consensus       124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g  203 (355)
T 3sre_A          124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS  203 (355)
T ss_dssp             TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred             CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCcc
Confidence            343 44444 22  46788887765422 22   2221  2346789999999877765421    0000      0122


Q ss_pred             EEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCC-CcE--eeeeccccCCccceEEEE
Q 021925          123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTET-GKL--LKESDKETGHKKTITSLA  198 (305)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~  198 (305)
                      .++....      . .+..+...-...+.++|+||++.++.+. ..+.|..||+.. ++.  .+.+.    .....-.++
T Consensus       204 ~vyr~d~------~-~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~----~~g~PDGi~  272 (355)
T 3sre_A          204 FVTYYSP------N-DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS----FDTLVDNIS  272 (355)
T ss_dssp             EEEEECT------T-CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE----CSSEEEEEE
T ss_pred             EEEEEEC------C-eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe----CCCCCceEE
Confidence            3333321      1 2223334445678899999998877665 578999999864 322  12221    245677889


Q ss_pred             EcC-CCCEEEEEeCC-CeEEEEEcC--CceEEEEEee---CCCeeEEEecCCCCcE
Q 021925          199 KAA-DGSHFLTGSLD-KSAKLWDAR--TLELIKTYVT---ERPVNAVTMSPLLDHV  247 (305)
Q Consensus       199 ~~~-~~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~~---~~~v~~~~~~~~~~~l  247 (305)
                      +.+ +|++.+++..+ +.|..|+..  .+..+..+..   +.......|..+|+.+
T Consensus       273 vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v~~ddG~~l  328 (355)
T 3sre_A          273 VDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVL  328 (355)
T ss_dssp             ECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEECSSSC
T ss_pred             EeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEEEEcCCCEE
Confidence            999 59877766544 344444443  2444444442   2222222344466543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.00  E-value=0.0042  Score=50.73  Aligned_cols=179  Identities=8%  Similarity=-0.039  Sum_probs=107.4

Q ss_pred             EEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925           66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (305)
Q Consensus        66 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (305)
                      +|+.+.. ..|+..++..............+..++|.+.+..++.+....    ..+....+...  .............
T Consensus        85 ~ll~~~~-~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~----~~I~~~~~~g~--~~~~~~~~~~~~~  157 (400)
T 3p5b_L           85 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ----RMICSTQLDRA--HGVSSYDTVISRD  157 (400)
T ss_dssp             EEEEEET-TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTT----TEEEEEEC--------CCCEEEECSS
T ss_pred             eeEEecc-ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCC----CeEEEEEcccC--CCCCcceEEEeCC
Confidence            4554443 679999998776666666667888999998666555553211    11222222110  0001222333334


Q ss_pred             CCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC--CCeEEEEEcCC
Q 021925          146 QGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL--DKSAKLWDART  222 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~  222 (305)
                      ......+++.+.++.|+ +-...+.|.+.++........+.   ........++++|.+..|+....  .+.|...++..
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence            45678899998555444 44567899999987554333332   23445789999996666655442  47899888874


Q ss_pred             ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCc
Q 021925          223 LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       223 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      ........ .-...+.++++|++..|..+....
T Consensus       235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~  267 (400)
T 3p5b_L          235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  267 (400)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CccEEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence            43333222 224578999999888887775443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.96  E-value=0.0075  Score=52.24  Aligned_cols=206  Identities=11%  Similarity=-0.001  Sum_probs=114.7

Q ss_pred             cceEEEEEcCCCCEEEEe-eCCCceEEEEcCCCee-eEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCee
Q 021925           11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~   87 (305)
                      +.+..++|++.+..|+-+ ...+.|..++++.... ...+...-.....+++.+.+..| ++-...+.|.+.++......
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            346688888855555544 3456777777765432 22333333567899999855544 45556789999998765443


Q ss_pred             EEE-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-
Q 021925           88 FTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-  165 (305)
Q Consensus        88 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  165 (305)
                      ... ..-.....+++.|.+..++.+.-+.     ...++.....    ...........-.....++++++++.|+.+. 
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~-----~~~I~r~~~d----G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~  190 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTDWGE-----VPKIERAGMD----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADA  190 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEECSS-----SCEEEEEETT----SCSCEEEECSSCSSEEEEEEETTTTEEEEEET
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEeccCC-----CCEEEEEECC----CCceEEEEeCCCCCCcEEEEEccCCEEEEEeC
Confidence            333 2445678999999755555443110     1122222111    1111222223345678899999877666554 


Q ss_pred             CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE
Q 021925          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  229 (305)
                      ..+.|...|+.... .+.+..  +.......+++..+ ..+.+-...+.|...|..+++....+
T Consensus       191 ~~~~I~~~~~dG~~-~~~~~~--~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          191 KLNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             TTCCEEEESSSCCE-EC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             CCCeEEEecCCCCc-cEEEEe--CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence            46789999986433 332221  11222345666655 44455556788999998877654443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.94  E-value=0.0039  Score=48.62  Aligned_cols=223  Identities=10%  Similarity=-0.005  Sum_probs=104.1

Q ss_pred             CCCEEEEee-CC-----CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCC-----CcEEEEecCCCC--
Q 021925           21 DGDLLFSCA-KD-----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETGA--   85 (305)
Q Consensus        21 ~~~~l~s~~-~d-----g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~vwd~~~~~--   85 (305)
                      ++..++.|+ .+     ..+.+||..+++-...  +.........+.  -++..++.|+.+     ..+.+||..+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            455677776 33     3788999887763321  111111112222  256677777754     468899988776  


Q ss_pred             -eeEEEeeCCC-ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           86 -QLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        86 -~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                       -...-..+.+ ....+...++.+.+.++.........+...+....    .-..+..+...... .+++. -+++.++.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~----~W~~~~~~p~~r~~-~~~~~-~~~~iyv~  165 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNID----QWSMLGDMQTAREG-AGLVV-ASGVIYCL  165 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT----EEEEEEECSSCCBS-CEEEE-ETTEEEEE
T ss_pred             eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCC----eEEECCCCCCCccc-ceEEE-ECCEEEEE
Confidence             3222221211 11122223566666554322221222333332111    00111111111111 11222 25667777


Q ss_pred             eeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCceEEEEEeeC-
Q 021925          164 AGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLELIKTYVTE-  232 (305)
Q Consensus       164 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~-  232 (305)
                      |+.+     ..+.+||+.+.+-...-. ..........+.+  ++++++.|+.+     ..+.+||+.+.+-...-... 
T Consensus       166 GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  242 (301)
T 2vpj_A          166 GGYDGLNILNSVEKYDPHTGHWTNVTP-MATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT  242 (301)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred             CCCCCCcccceEEEEeCCCCcEEeCCC-CCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence            7654     468999998765433211 1111122222222  56777788764     46899999876543322211 


Q ss_pred             CCeeEEEecCCCCcEEEeeCCc
Q 021925          233 RPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       233 ~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      ......+..-+++.++.|+.++
T Consensus       243 ~r~~~~~~~~~~~i~v~GG~~~  264 (301)
T 2vpj_A          243 PRCYVGATVLRGRLYAIAGYDG  264 (301)
T ss_dssp             CCBSCEEEEETTEEEEECCBCS
T ss_pred             cccceeEEEECCEEEEEcCcCC
Confidence            1111112223666777776543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.92  E-value=0.0057  Score=49.69  Aligned_cols=210  Identities=8%  Similarity=-0.073  Sum_probs=119.5

Q ss_pred             EEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeEEEe-e
Q 021925           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFN-F   92 (305)
Q Consensus        15 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~-~   92 (305)
                      |.+..+.+ +|+.+ ....|+..++...+....+. ....+..++|.+.+..| ++-...+.|..+++........+. .
T Consensus        81 C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~  157 (386)
T 3v65_B           81 CKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG  157 (386)
T ss_dssp             EEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred             ECCccccc-eeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence            44444433 44433 34578888877655444444 34457899999755555 454567889999988665444333 2


Q ss_pred             CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CC-CcE
Q 021925           93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-ED-AIV  170 (305)
Q Consensus        93 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i  170 (305)
                      ......+++.+.+..++.+....    ..  +.....    ..................++++|.+..|+... .. +.|
T Consensus       158 ~~~p~glavd~~~g~lY~~d~~~----~~--I~~~~~----dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I  227 (386)
T 3v65_B          158 LESPGGLAVDWVHDKLYWTDSGT----SR--IEVANL----DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI  227 (386)
T ss_dssp             CSCCCCEEEETTTTEEEEEETTT----TE--EEECBT----TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCCccEEEEEeCCCeEEEEcCCC----Ce--EEEEeC----CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEE
Confidence            23567888887555544443211    11  111111    11112222333445678999999777666554 34 789


Q ss_pred             EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceEEEEEe-eCCCeeEEEe
Q 021925          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYV-TERPVNAVTM  240 (305)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~  240 (305)
                      ...++..........   ..-...+.++++|++..|+.+ +..+.|..+|+........+. .......+++
T Consensus       228 ~r~~~dG~~~~~~~~---~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav  296 (386)
T 3v65_B          228 EASSMDGSGRRIIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV  296 (386)
T ss_dssp             EEEETTSCSCEEEEC---SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE
T ss_pred             EEEeCCCCCcEEEEE---CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE
Confidence            999886443222222   233457899999866665544 456789999987443322222 2334567777

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.92  E-value=0.0053  Score=49.21  Aligned_cols=241  Identities=10%  Similarity=0.026  Sum_probs=122.9

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEe-------cCCCcceEEEEEcCC---CcEEEEE-eC------
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-------RGHNGAVWCCDVSRD---SMTLITG-SA------   72 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~-------~~~~~~v~~i~~~~~---~~~l~s~-~~------   72 (305)
                      -.....|+|.|+|+.|+.+...|.|++++. +++....+       .........++++|+   +..|..+ +.      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            345789999999983444556799999984 34322111       112346789999995   4444443 22      


Q ss_pred             -CCcEEEEecCCCC----eeEE-Ee-eC------CCceEEEEecCCceEEEeCCcceee------eeeEEEEEeecccCC
Q 021925           73 -DQTAKLWNVETGA----QLFT-FN-FD------SPARSVDFAVGDKLAVITTDPFMEL------NSAIHVKRIARDPAD  133 (305)
Q Consensus        73 -dg~v~vwd~~~~~----~~~~-~~-~~------~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  133 (305)
                       ...|..+++....    .... +. .+      .....++|.|++.+.++..+.....      .....+..+......
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             2356666665331    1111 11 11      2246799999997776654422100      001123333221110


Q ss_pred             CC--------CceEEEEeccCCCeeEEEEcCCCCEEEEeeCC--CcEEEEeCCCCcEe----------------------
Q 021925          134 QG--------GESVLILKGPQGRINRAVWGPLNRTIISAGED--AIVRIWDTETGKLL----------------------  181 (305)
Q Consensus       134 ~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~----------------------  181 (305)
                      ..        ......+.........++|+|....|.++...  +.=.|.-+..+..-                      
T Consensus       176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~  255 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE  255 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred             CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence            00        00111111122346789999943334443322  11122222221110                      


Q ss_pred             --eeeccc---cCCccceEEEEEcC-------CCCEEEEEeCCCeEEEEEcCCceEEEEEe----eCCCeeEEEecCCCC
Q 021925          182 --KESDKE---TGHKKTITSLAKAA-------DGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLD  245 (305)
Q Consensus       182 --~~~~~~---~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~  245 (305)
                        ..+...   -.+......++|..       +|.++++.-..+.|...++..++......    ....+..+++.|+|.
T Consensus       256 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~  335 (353)
T 2g8s_A          256 IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY  335 (353)
T ss_dssp             SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred             CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence              000000   01223567778764       46677776678888888887665443322    234789999999998


Q ss_pred             cEEEee
Q 021925          246 HVCIGE  251 (305)
Q Consensus       246 ~l~~~~  251 (305)
                      +.++..
T Consensus       336 lyv~td  341 (353)
T 2g8s_A          336 LYVLTD  341 (353)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            666544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.88  E-value=0.0026  Score=49.76  Aligned_cols=93  Identities=11%  Similarity=0.093  Sum_probs=63.9

Q ss_pred             CCcEEEEeCC---CCcEeeeecccc---C-------CccceEEEEEcCCCCEEEEEeCC-CeEEEEEcCCceEEEEEe-e
Q 021925          167 DAIVRIWDTE---TGKLLKESDKET---G-------HKKTITSLAKAADGSHFLTGSLD-KSAKLWDARTLELIKTYV-T  231 (305)
Q Consensus       167 dg~i~iwd~~---~~~~~~~~~~~~---~-------~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~-~  231 (305)
                      +..|..+|+.   +++.+.......   +       .......++..++|+..++++.. +.|...+... +.+..+. .
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~~~~~~  177 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVSTFAWE  177 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEEEEEEC
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEeeeeec
Confidence            5779999998   777665443110   0       11358899999999999999988 8888888653 3333332 1


Q ss_pred             C------CCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925          232 E------RPVNAVTMSPLLDHVCIGEPQTIKFMLL  260 (305)
Q Consensus       232 ~------~~v~~~~~~~~~~~l~~~~~~~~~~~~~  260 (305)
                      .      ...+.++++|+|+.|++....+....+.
T Consensus       178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD  212 (334)
T 2p9w_A          178 SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD  212 (334)
T ss_dssp             CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred             CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence            1      1257999999999988886666544443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.88  E-value=0.011  Score=51.40  Aligned_cols=204  Identities=9%  Similarity=-0.018  Sum_probs=121.3

Q ss_pred             cceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeE
Q 021925           11 RPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      ..+..++|++.+..|+ +-..++.|+.+++........+.........+++.+.+..| ++-...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            3567899998655555 44557888888876544333343333456788888755444 555557889999987554333


Q ss_pred             EE-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-C
Q 021925           89 TF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-E  166 (305)
Q Consensus        89 ~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  166 (305)
                      .. ..-.....+++.|....++.+.-+.     ...++.....     +.....+...-.....++++++++.|+.+. .
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~-----~~~I~r~~~d-----G~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~  186 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGG-----KPKIDRAAMD-----GSERTTLVPNVGRANGLTIDYAKRRLYWTDLD  186 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSS-----SCEEEEEETT-----SCSCEEEECSCSSEEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCC-----CCEEEEEeCC-----CCceEEEECCCCCcceEEEccccCEEEEEECC
Confidence            33 2345678999998655555443110     1122222211     112222223455678999999877776665 4


Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  229 (305)
                      .+.|...|+..... ..+.   ........+++.. +..+++-...+.|...|..+++....+
T Consensus       187 ~~~I~~~d~dG~~~-~v~~---~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          187 TNLIESSNMLGLNR-EVIA---DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             TTEEEEEETTSCSC-EEEE---ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCEEEEEcCCCCce-EEee---ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            67899999875433 2332   1223445777764 444555556788999997776544433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.83  E-value=0.0076  Score=48.29  Aligned_cols=234  Identities=9%  Similarity=0.000  Sum_probs=125.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-eeEEec---CCCcceEEEEEcCC---CcEEEEEeC----C----C
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYR---GHNGAVWCCDVSRD---SMTLITGSA----D----Q   74 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~---~~~~~v~~i~~~~~---~~~l~s~~~----d----g   74 (305)
                      -.....|+|.|+|++++ +..+|.|++++ .+++ .+..+.   ........|+++|+   +..|+.+..    +    .
T Consensus        28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34578999999998555 45669999887 4554 222221   12356899999997   445544332    3    5


Q ss_pred             cEEEEecCCC--C-----ee-EEEe--eCCCceEEEEecCCceEEEeCCcceee------eeeEEEEEeecccCCCCC--
Q 021925           75 TAKLWNVETG--A-----QL-FTFN--FDSPARSVDFAVGDKLAVITTDPFMEL------NSAIHVKRIARDPADQGG--  136 (305)
Q Consensus        75 ~v~vwd~~~~--~-----~~-~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--  136 (305)
                      .|..++....  .     .+ ..+.  .......++|.|++.+.++..+.....      .....+..+.........  
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777877654  1     11 1122  112356799999998666654321110      011123333221110000  


Q ss_pred             --ceEEEEeccCCCeeEEEEcC-CCCEEEEeeCCC---cEEEEeCCCCc------------------EeeeeccccCCcc
Q 021925          137 --ESVLILKGPQGRINRAVWGP-LNRTIISAGEDA---IVRIWDTETGK------------------LLKESDKETGHKK  192 (305)
Q Consensus       137 --~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~iwd~~~~~------------------~~~~~~~~~~~~~  192 (305)
                        .......++ .....++|+| +++++++-....   .|.+..  .+.                  ++..+.   ....
T Consensus       186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~---~~~~  259 (354)
T 3a9g_A          186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG---SETW  259 (354)
T ss_dssp             STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT---TCCC
T ss_pred             CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC---CCCc
Confidence              011111222 3456799999 566444432211   243332  221                  111110   1234


Q ss_pred             ceEEEEEc-------CCCCEEEEEeCCCeEEEEEcCCc-eEE--EEEee--CCCeeEEEecCCCCcEEEee
Q 021925          193 TITSLAKA-------ADGSHFLTGSLDKSAKLWDARTL-ELI--KTYVT--ERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       193 ~v~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~--~~~v~~~~~~~~~~~l~~~~  251 (305)
                      ....++|.       .+|.++++.-..+.|...++... +..  ..+..  ...+..+++.|||.+.++..
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            57788883       46777777667788998888753 332  22221  35789999999997666553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.79  E-value=0.012  Score=49.18  Aligned_cols=207  Identities=6%  Similarity=-0.045  Sum_probs=109.5

Q ss_pred             ceEEEEE-------cCCCCEEEEeeCCC-c------eEEEEcCC-Ceee-----EEecCCCcceEEEEEcCC-CcEEEEE
Q 021925           12 PLTYLKY-------NKDGDLLFSCAKDH-T------PTVWFADN-GERL-----GTYRGHNGAVWCCDVSRD-SMTLITG   70 (305)
Q Consensus        12 ~v~~~~~-------~~~~~~l~s~~~dg-~------v~iw~~~~-~~~~-----~~~~~~~~~v~~i~~~~~-~~~l~s~   70 (305)
                      ....++|       +++|+.|+.+...+ .      |.+.+... ++..     ..+... .....++++|+ +.++++-
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNS  265 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEE
Confidence            5889999       99999666665543 2      55665333 2221     122211 13357788994 5555566


Q ss_pred             eCCCcEEEEecC-------CCCe-----------eEE-Ee--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeec
Q 021925           71 SADQTAKLWNVE-------TGAQ-----------LFT-FN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR  129 (305)
Q Consensus        71 ~~dg~v~vwd~~-------~~~~-----------~~~-~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (305)
                      ..++.|..+|++       ++..           ... +.  .......++++|++..++++.....    .+...+...
T Consensus       266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h----~I~kid~dg  341 (496)
T 3kya_A          266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNH----YFMRSDYDE  341 (496)
T ss_dssp             TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT----EEEEEEEET
T ss_pred             CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCC----EEEEEecCC
Confidence            678889999987       5543           112 22  3345689999999996655543211    111111110


Q ss_pred             ccCCCCCceEEEEec---------------cCCCee-EEEEc-------CCCCEEEEeeCCCcEEEEeCCCCcEeeeecc
Q 021925          130 DPADQGGESVLILKG---------------PQGRIN-RAVWG-------PLNRTIISAGEDAIVRIWDTETGKLLKESDK  186 (305)
Q Consensus       130 ~~~~~~~~~~~~~~~---------------~~~~i~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  186 (305)
                      ..  ........+.+               .-.... .++..       +++.+.++=.....|+.++ .++. +.++..
T Consensus       342 ~~--~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG  417 (496)
T 3kya_A          342 IK--KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAG  417 (496)
T ss_dssp             TT--TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEE
T ss_pred             Cc--ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEec
Confidence            00  00000001111               011233 34444       4556566656678899998 4453 333321


Q ss_pred             c---------------cC------CccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceEEE
Q 021925          187 E---------------TG------HKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIK  227 (305)
Q Consensus       187 ~---------------~~------~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~  227 (305)
                      .               .+      .-.....++++++ +.++++=....+|+.++++....+.
T Consensus       418 ~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          418 RGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             SCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             ccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence            0               00      1134677888886 6666666667788888877655443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.70  E-value=0.013  Score=51.27  Aligned_cols=74  Identities=4%  Similarity=0.093  Sum_probs=49.6

Q ss_pred             ceEEEEEcCCCCEEEEeeC-CCceEEEEcCCCeeeEEecCCCc-ceEEEEEcCCCcEEEEEe-CC-----CcEEEEecCC
Q 021925           12 PLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHNG-AVWCCDVSRDSMTLITGS-AD-----QTAKLWNVET   83 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~s~~-~d-----g~v~vwd~~~   83 (305)
                      ...++++.++++.++.|+. +..+.+||..+++-...-..+.. .-.+++..++++.++.|+ .+     ..+.+||..+
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            3445677889999999884 46899999987764332211111 123455667888888888 34     5689999876


Q ss_pred             CC
Q 021925           84 GA   85 (305)
Q Consensus        84 ~~   85 (305)
                      ++
T Consensus       324 ~~  325 (656)
T 1k3i_A          324 KT  325 (656)
T ss_dssp             TE
T ss_pred             Cc
Confidence            54

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.66  E-value=0.015  Score=47.06  Aligned_cols=150  Identities=17%  Similarity=0.221  Sum_probs=95.8

Q ss_pred             cCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeC----C-CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCC
Q 021925           61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFD----S-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG  135 (305)
Q Consensus        61 ~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~----~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (305)
                      +.+|..++.+- ++.||.-++..+..-+.+..+    . .+..+..+|+|.+++..+..      .+.+-.+........
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~------~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN------EIFVMEVPWGYSNVE  101 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS------EEEEEECCTTCSCCC
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC------eEEEEEecCccccCc
Confidence            34565665543 367888887755555555544    2 68889999999999998753      333333332111111


Q ss_pred             ------CceEEEEec------cCCCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCCc--Eeeeecc------ccCCcc
Q 021925          136 ------GESVLILKG------PQGRINRAVWGPLN---RTIISAGEDAIVRIWDTETGK--LLKESDK------ETGHKK  192 (305)
Q Consensus       136 ------~~~~~~~~~------~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~--~~~~~~~------~~~~~~  192 (305)
                            .-....+.-      ...+|..+.|+|-+   ..|++-..|+.|++||+....  +. .+..      ......
T Consensus       102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~  180 (452)
T 3pbp_A          102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVN  180 (452)
T ss_dssp             CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCC
T ss_pred             ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccc
Confidence                  011222221      35779999999965   589999999999999998622  22 2221      112336


Q ss_pred             ceEEEEEcCCCCEEEEEe--CCCeEEEE
Q 021925          193 TITSLAKAADGSHFLTGS--LDKSAKLW  218 (305)
Q Consensus       193 ~v~~~~~~~~~~~l~~~~--~dg~i~iw  218 (305)
                      .|.+++|.+++-.|...+  ..|.|+-.
T Consensus       181 ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          181 DITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             eEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            789999999887777755  78888764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.63  E-value=0.016  Score=46.24  Aligned_cols=191  Identities=8%  Similarity=0.119  Sum_probs=109.5

Q ss_pred             ceEEEEEcCCCcEEEEEe------------CCCcEEEEecCCC-CeeEEEeeC--------CCceEEEEec--CCc-eEE
Q 021925           54 AVWCCDVSRDSMTLITGS------------ADQTAKLWNVETG-AQLFTFNFD--------SPARSVDFAV--GDK-LAV  109 (305)
Q Consensus        54 ~v~~i~~~~~~~~l~s~~------------~dg~v~vwd~~~~-~~~~~~~~~--------~~v~~~~~~~--~~~-~~~  109 (305)
                      ...++...|+|..+++++            .+|.|.++|.++. .....+...        -....+.+.+  ++. .++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            456677888876555542            6899999998743 122333322        2566777766  343 344


Q ss_pred             EeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-CCCeeEEEEcCCCCEEEEee-----------------CCCcEE
Q 021925          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAG-----------------EDAIVR  171 (305)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~  171 (305)
                      ++....  ....+.++.+....  .....+..+.+. -...+.+.+.++|++.++..                 ..|.|.
T Consensus       131 Vvnh~~--~~s~ielf~~d~~~--~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          131 VVNHPG--SSSTVEVFKFQEEE--KSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEECST--TCCEEEEEEEETTT--TEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEECCC--CCCeEEEEEEECCC--CEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence            443221  12344444443221  111222233322 34578999999998777654                 125566


Q ss_pred             EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-ceE--EEEEeeCCCeeEEEecC-CCCc
Q 021925          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDART-LEL--IKTYVTERPVNAVTMSP-LLDH  246 (305)
Q Consensus       172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~v~~~~~~~-~~~~  246 (305)
                      .+|..  + +..+.   ..-...+.++|+||++.|+.+. ..++|..|++.. ++.  ...+......-.+++.+ +|++
T Consensus       207 r~d~~--~-~~~~~---~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          207 YYSPN--D-VRVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL  280 (355)
T ss_dssp             EECTT--C-CEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             EEECC--e-EEEee---cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcE
Confidence            66653  2 22221   2335678999999998876654 578999999863 322  23344455677889999 5887


Q ss_pred             EEEeeCCc
Q 021925          247 VCIGEPQT  254 (305)
Q Consensus       247 l~~~~~~~  254 (305)
                      .+++..++
T Consensus       281 wva~~~~g  288 (355)
T 3sre_A          281 WVGCHPNG  288 (355)
T ss_dssp             EEEEESCH
T ss_pred             EEEecCCc
Confidence            77665443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.60  E-value=0.0063  Score=56.77  Aligned_cols=214  Identities=9%  Similarity=0.006  Sum_probs=127.0

Q ss_pred             EEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-CeeEEEe----
Q 021925           17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFN----   91 (305)
Q Consensus        17 ~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~----   91 (305)
                      -.+|..+.+|--. ..++.|+|+++.+.++.+. ...+|.-=.|..+. .|+-.+. ..|.-|++... .++..+.    
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~-~~e~VvfWkWis~~-~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~  147 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHSS  147 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhhhcccc-cCCCceEEEecCCC-eeEEEcC-CeEEEeccCCCCccHHHHhcchh
Confidence            3577777666554 6799999999888877776 35567777786544 3443333 57999999642 2322222    


Q ss_pred             -eCCCceEEEEecCCceEEEeCC--cceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC--CC-CEEEEee
Q 021925           92 -FDSPARSVDFAVGDKLAVITTD--PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LN-RTIISAG  165 (305)
Q Consensus        92 -~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~~l~~~~  165 (305)
                       .+..|..-..+++.++++..+-  ....+.+.+.++...+       +..+.+.||......+....  .. ..++.+.
T Consensus       148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-------~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~  220 (1630)
T 1xi4_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAV  220 (1630)
T ss_pred             cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-------ccchhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence             2456666677778877765432  1123345555555443       23344566665554444331  11 2333222


Q ss_pred             C---CCcEEEEeCCCC---cEe------eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eC
Q 021925          166 E---DAIVRIWDTETG---KLL------KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TE  232 (305)
Q Consensus       166 ~---dg~i~iwd~~~~---~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~  232 (305)
                      .   .++++|.++...   .+.      .....+.....-..++..++....+...+.-|.+.++|+.++.++..-+ .+
T Consensus       221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~  300 (1630)
T 1xi4_A          221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG  300 (1630)
T ss_pred             ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccC
Confidence            2   378999998543   111      1111111223445677888877888899999999999999998887655 44


Q ss_pred             CCeeEEEec
Q 021925          233 RPVNAVTMS  241 (305)
Q Consensus       233 ~~v~~~~~~  241 (305)
                      .+|-..+-+
T Consensus       301 ~~iF~~~~~  309 (1630)
T 1xi4_A          301 ETIFVTAPH  309 (1630)
T ss_pred             CceEEeccC
Confidence            444433333

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.57  E-value=0.018  Score=45.35  Aligned_cols=196  Identities=8%  Similarity=-0.073  Sum_probs=112.0

Q ss_pred             CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCC----CCeeEEEe-eCCCceEEEEecC
Q 021925           31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVET----GAQLFTFN-FDSPARSVDFAVG  104 (305)
Q Consensus        31 dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~----~~~~~~~~-~~~~v~~~~~~~~  104 (305)
                      ...|+..|+.+.+....+. ....+.+++|++++..|+ +-..++.|..+++.+    ......+. .-..+..+++.+.
T Consensus         9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            4578888988776555554 345678999998655554 445578899999876    22222222 2245678899875


Q ss_pred             CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-C-CcEEEEeCCCCcEee
Q 021925          105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-D-AIVRIWDTETGKLLK  182 (305)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~  182 (305)
                      +..++.+...    ...+...+..      .................++++|.+..|+.+.. . +.|...++.. +...
T Consensus        88 ~~~ly~~d~~----~~~I~~~~~~------g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~  156 (316)
T 1ijq_A           88 HSNIYWTDSV----LGTVSVADTK------GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIY  156 (316)
T ss_dssp             TTEEEEEETT----TTEEEEEETT------SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEE
T ss_pred             CCeEEEEECC----CCEEEEEeCC------CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeE
Confidence            5444443221    1122222211      11122222333456789999997766655544 2 7898888863 3333


Q ss_pred             eeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEEEEEe-e---CCCeeEEEec
Q 021925          183 ESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYV-T---ERPVNAVTMS  241 (305)
Q Consensus       183 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~---~~~v~~~~~~  241 (305)
                      .+..  ..-...+.+++++++..|+.+. ..+.|..+|+.... ...+. .   ......+++.
T Consensus       157 ~~~~--~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~  217 (316)
T 1ijq_A          157 SLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF  217 (316)
T ss_dssp             EEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE
T ss_pred             EEEE--CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE
Confidence            3321  1235678999998776665544 56789999987432 23332 1   2335677774

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.57  E-value=0.026  Score=47.16  Aligned_cols=238  Identities=6%  Similarity=0.018  Sum_probs=128.2

Q ss_pred             ceEEEEEcC-CCCEEEEe-eCCCceEEEEcCCCeeeEEecCC---CcceEEEEE-------cCCCcEEEEEeCCC-c---
Q 021925           12 PLTYLKYNK-DGDLLFSC-AKDHTPTVWFADNGERLGTYRGH---NGAVWCCDV-------SRDSMTLITGSADQ-T---   75 (305)
Q Consensus        12 ~v~~~~~~~-~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~---~~~v~~i~~-------~~~~~~l~s~~~dg-~---   75 (305)
                      ....|+|+| ++..|+.+ ...+.|++.|.+++.........   ......++|       +++++.|+++...+ .   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899998 34444444 44467888898877665544322   235899999       99998676665543 2   


Q ss_pred             ---EEEEecCC-CCee-----EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeec------ccCC------C
Q 021925           76 ---AKLWNVET-GAQL-----FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR------DPAD------Q  134 (305)
Q Consensus        76 ---v~vwd~~~-~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~------~  134 (305)
                         |.+.+... ++..     ..+..-.....++++|++..++++...    ...+...++..      ....      .
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~----~g~V~r~d~~~~~~~~~tg~~~tp~~~~  295 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYE----KGQVFRLDLVDYFKTIKNGGSWDPIVKN  295 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETT----TTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECC----CCEEEEEecccccccccCceeecccccc
Confidence               66665443 1221     233333456688889965555544321    12222222220      0000      0


Q ss_pred             -C--CceEEEEeccCCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCC--CCcEe--eeecc---ccCC---------ccce
Q 021925          135 -G--GESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTE--TGKLL--KESDK---ETGH---------KKTI  194 (305)
Q Consensus       135 -~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~--~~~~~--~~~~~---~~~~---------~~~v  194 (305)
                       .  .+.+.. .+.......++++|++++|+.+ +....|+.+|..  .+...  ..+..   ..+.         -...
T Consensus       296 ~~g~~~~l~~-~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P  374 (496)
T 3kya_A          296 NPNTFKQLFT-IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP  374 (496)
T ss_dssp             CTTTEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred             cccccceeEe-cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence             0  001111 1223456789999999965544 456789986653  33210  11110   0011         1123


Q ss_pred             E-EEEEc-------CCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-------------------------CCeeEEEec
Q 021925          195 T-SLAKA-------ADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-------------------------RPVNAVTMS  241 (305)
Q Consensus       195 ~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~v~~~~~~  241 (305)
                      . .++..       +++.++++-...++|+.++ .++. +.++...                         .....++++
T Consensus       375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd  452 (496)
T 3kya_A          375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD  452 (496)
T ss_dssp             EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred             eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence            4 44554       4666677767788999998 4553 3333211                         125688999


Q ss_pred             CCCCcEEEeeCCcEE
Q 021925          242 PLLDHVCIGEPQTIK  256 (305)
Q Consensus       242 ~~~~~l~~~~~~~~~  256 (305)
                      ++...|+++...+.+
T Consensus       453 ~~~g~lyVaD~~N~r  467 (496)
T 3kya_A          453 DVKEMFYVHDQVGHT  467 (496)
T ss_dssp             TTTTEEEEEETTTTE
T ss_pred             CCCCEEEEEeCCCCE
Confidence            974456666555444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.52  E-value=0.02  Score=44.59  Aligned_cols=222  Identities=9%  Similarity=-0.020  Sum_probs=99.8

Q ss_pred             CCCEEEEeeCC----CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCC-----CcEEEEecCCCCeeEE
Q 021925           21 DGDLLFSCAKD----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETGAQLFT   89 (305)
Q Consensus        21 ~~~~l~s~~~d----g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~vwd~~~~~~~~~   89 (305)
                      ++..++.|+.+    ..+..||..+.+-...  +......-..+..  ++..++.|+.+     ..+.+||..+.+-...
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            34566666643    4678899887753322  1111111122222  56677777754     3588889877653322


Q ss_pred             EeeCCC--ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925           90 FNFDSP--ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (305)
Q Consensus        90 ~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  167 (305)
                      -..+.+  -.+++. -++.+.+.++.........+..++.....    -..+..+...... .+++. -+++.++.|+.+
T Consensus        93 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~  165 (302)
T 2xn4_A           93 ANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNE----WFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYD  165 (302)
T ss_dssp             CCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTE----EEEECCCSSCCBS-CEEEE-ETTEEEEECCEE
T ss_pred             CCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCe----EeecCCCCCcccC-ceEEE-ECCEEEEEeCCC
Confidence            222211  122222 35555555442221112222222221100    0000000011111 12222 245666666542


Q ss_pred             -------CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCceEEEEEeeC-CC
Q 021925          168 -------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLELIKTYVTE-RP  234 (305)
Q Consensus       168 -------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~-~~  234 (305)
                             ..+.+||+.+.+-...-... ........+.+  ++++++.|+.+     ..+.+||+.+.+-...-... ..
T Consensus       166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r  242 (302)
T 2xn4_A          166 VASRQCLSTVECYNATTNEWTYIAEMS-TRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR  242 (302)
T ss_dssp             TTTTEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred             CCCCccccEEEEEeCCCCcEEECCCCc-cccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc
Confidence                   35889999876543321111 11122222222  56777888764     36899999876543322211 11


Q ss_pred             eeEEEecCCCCcEEEeeCCc
Q 021925          235 VNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       235 v~~~~~~~~~~~l~~~~~~~  254 (305)
                      ....+..-+++.++.|+.++
T Consensus       243 ~~~~~~~~~~~i~v~GG~~~  262 (302)
T 2xn4_A          243 RNAGVCAVNGLLYVVGGDDG  262 (302)
T ss_dssp             BSCEEEEETTEEEEECCBCS
T ss_pred             ccCeEEEECCEEEEECCcCC
Confidence            11112223566777776543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.51  E-value=0.047  Score=48.68  Aligned_cols=208  Identities=8%  Similarity=-0.060  Sum_probs=117.6

Q ss_pred             CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCC----CeeEEEe-eCCCceEEEEec
Q 021925           30 KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETG----AQLFTFN-FDSPARSVDFAV  103 (305)
Q Consensus        30 ~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~----~~~~~~~-~~~~v~~~~~~~  103 (305)
                      ....|+..++...+....+. ....+..++|.+....| ++-...+.|+.+++...    .....+. .-..+..+++.+
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence            34567777776655444444 34567899999854444 45555678988888753    2222232 335677899998


Q ss_pred             CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC--CCcEEEEeCCCCcEe
Q 021925          104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE--DAIVRIWDTETGKLL  181 (305)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~  181 (305)
                      .+..++.+...    ...+...++.      .......+.........|+++|.+.+|+....  .+.|...++......
T Consensus       481 ~~~~LY~tD~~----~~~I~v~~ld------G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          481 IHSNIYWTDSV----LGTVSVADTK------GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  550 (791)
T ss_dssp             TTTEEEEEETT----TTEEEEEETT------SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             cCCcEEEEecC----CCeEEEEeCC------CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence            77655555422    1122222221      11222223334456889999998766665543  378999998754433


Q ss_pred             eeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEEEEEeeC---CCeeEEEecCCCCcEEEeeCC
Q 021925          182 KESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVTE---RPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       182 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~  253 (305)
                      ..+.   ..-...+.|++++.+..|+.+. ..+.|...++............   .....|++  .+..|+.+...
T Consensus       551 ~lv~---~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~  621 (791)
T 3m0c_C          551 SLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDII  621 (791)
T ss_dssp             EEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETT
T ss_pred             EEEe---CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECC
Confidence            3332   2345788999998766666554 4678999998654333333221   12345555  33455555433

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.50  E-value=0.021  Score=44.59  Aligned_cols=221  Identities=11%  Similarity=0.011  Sum_probs=101.5

Q ss_pred             CCCEEEEeeCC----CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeC----C-----CcEEEEecCCCC
Q 021925           21 DGDLLFSCAKD----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSA----D-----QTAKLWNVETGA   85 (305)
Q Consensus        21 ~~~~l~s~~~d----g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~----d-----g~v~vwd~~~~~   85 (305)
                      ++..++.|+.+    ..+.+||..+++-...  +......-. ++.. ++..++.|+.    +     ..+.++|..+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLA-GCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccce-EEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            56677777742    3688999887664322  111111112 2222 5667777765    2     468888987764


Q ss_pred             eeEEEeeCC--CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           86 QLFTFNFDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        86 ~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      -...-..+.  .-.+++ .-++.+++.++.........+..++.....-    ..+..+......-..+.+  +++.++.
T Consensus       102 W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~--~~~iyv~  174 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVG-VIDGHIYAVGGSHGCIHHNSVERYEPERDEW----HLVAPMLTRRIGVGVAVL--NRLLYAV  174 (308)
T ss_dssp             EEECCCCSSCCBTCEEE-EETTEEEEECCEETTEECCCEEEEETTTTEE----EECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             EeECCCCCcCccccEEE-EECCEEEEEcCCCCCcccccEEEECCCCCeE----eECCCCCccccceEEEEE--CCEEEEE
Confidence            322211111  112222 2355665555432222222233333221100    000000111111112222  5666677


Q ss_pred             eeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCceEEEEEe--e
Q 021925          164 AGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLELIKTYV--T  231 (305)
Q Consensus       164 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~--~  231 (305)
                      |+.+     ..+.+||+.+.+-...-. ..........+.+  ++++++.|+.+     ..+.+||+.+.+-...-.  .
T Consensus       175 GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  251 (308)
T 1zgk_A          175 GGFDGTNRLNSAECYYPERNEWRMITA-MNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH  251 (308)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred             eCCCCCCcCceEEEEeCCCCeEeeCCC-CCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence            7654     468999998765432211 1111122222333  66777788765     469999998765433211  1


Q ss_pred             CCCeeEEEecCCCCcEEEeeCCc
Q 021925          232 ERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       232 ~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      ...-.+++. -++++++.|+.++
T Consensus       252 ~r~~~~~~~-~~~~i~v~GG~~~  273 (308)
T 1zgk_A          252 RRSALGITV-HQGRIYVLGGYDG  273 (308)
T ss_dssp             CCBSCEEEE-ETTEEEEECCBCS
T ss_pred             CccceEEEE-ECCEEEEEcCcCC
Confidence            111112222 2566777776544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.41  E-value=0.028  Score=43.71  Aligned_cols=191  Identities=8%  Similarity=0.041  Sum_probs=91.8

Q ss_pred             CCCEEEEeeCC-----CceEEEEcCCCe---eeE--EecCCCcceEEEEEcCCCcEEEEEeCC-----CcEEEEecCCCC
Q 021925           21 DGDLLFSCAKD-----HTPTVWFADNGE---RLG--TYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETGA   85 (305)
Q Consensus        21 ~~~~l~s~~~d-----g~v~iw~~~~~~---~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~vwd~~~~~   85 (305)
                      +++.++.|+.+     ..+.+||..+++   -..  .+......-..+..  +++.++.|+.+     ..+.++|..+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            56677777754     468899988765   322  22211122222222  56677777654     358888987765


Q ss_pred             eeEEEeeCCC-ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec-cCCC-eeEEEEcCCCCEEE
Q 021925           86 QLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGR-INRAVWGPLNRTII  162 (305)
Q Consensus        86 ~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-i~~~~~~~~~~~l~  162 (305)
                      -...-..+.+ ....+..-++++.+.++.........+...+....       .-..+.. .... -.++.. -+++.++
T Consensus       140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~-------~W~~~~~~p~~r~~~~~~~-~~~~i~v  211 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG-------HWTNVTPMATKRSGAGVAL-LNDHIYV  211 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT-------EEEEECCCSSCCBSCEEEE-ETTEEEE
T ss_pred             EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCC-------cEEeCCCCCcccccceEEE-ECCEEEE
Confidence            3332222221 11222233566666554322222233333332211       0011110 1111 111222 2466777


Q ss_pred             EeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 021925          163 SAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE  224 (305)
Q Consensus       163 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  224 (305)
                      .|+.+     ..+.+||+.+.+-...-. ..........+.+  ++++++.|+.+     ..+.+||.++.+
T Consensus       212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          212 VGGFDGTAHLSSVEAYNIRTDSWTTVTS-MTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             ECCBCSSSBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             EeCCCCCcccceEEEEeCCCCcEEECCC-CCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            77654     468999998765433221 1111122222333  66777788765     357888887654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.33  E-value=0.038  Score=43.51  Aligned_cols=197  Identities=7%  Similarity=-0.106  Sum_probs=110.4

Q ss_pred             CCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecCCCCee-EEEe-eCCCceEEEEecCC
Q 021925           31 DHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQL-FTFN-FDSPARSVDFAVGD  105 (305)
Q Consensus        31 dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~~~~~~-~~~~-~~~~v~~~~~~~~~  105 (305)
                      ...|+..++....  ....+. .......++|.+.+. .+.+-...+.|..+++..+... .... .-.....+++.+.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            4678888887653  222222 223567899998544 4455556788999998766422 2222 23456788888755


Q ss_pred             ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee--CCCcEEEEeCCCCcEeee
Q 021925          106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGKLLKE  183 (305)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~  183 (305)
                      ..++.+...    ...+...+..      .................++++|.+..|+.+.  ..+.|...++.... ...
T Consensus        91 g~ly~~d~~----~~~I~~~~~d------G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~  159 (318)
T 3sov_A           91 EKLYWTDSE----TNRIEVSNLD------GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFI  159 (318)
T ss_dssp             TEEEEEETT----TTEEEEEETT------SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred             CeEEEEECC----CCEEEEEECC------CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEE
Confidence            444443221    1122222211      1111222224445678899999776666555  35789998886432 222


Q ss_pred             eccccCCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceEEEEEe-eCCCeeEEEec
Q 021925          184 SDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYV-TERPVNAVTMS  241 (305)
Q Consensus       184 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~  241 (305)
                      +..  ..-...+.++++|++..|+.+ +..+.|..+|+.......... .......+++.
T Consensus       160 ~~~--~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~  217 (318)
T 3sov_A          160 IIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF  217 (318)
T ss_dssp             EEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE
T ss_pred             EEE--CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence            211  223457899999966666554 457889999987433222222 22334566664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.22  E-value=0.01  Score=48.05  Aligned_cols=71  Identities=14%  Similarity=0.091  Sum_probs=54.7

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe------------eeEEecC------CCcceEEEEEcC---CCcEEEEE
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------------RLGTYRG------HNGAVWCCDVSR---DSMTLITG   70 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~------------~~~~~~~------~~~~v~~i~~~~---~~~~l~s~   70 (305)
                      .|..+..+|+|++||..+ +..|.|-.+..+.            ..+.+.-      ...+|..+.|+|   .+..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            578899999999999876 5588888877321            1122221      357899999999   45689999


Q ss_pred             eCCCcEEEEecCC
Q 021925           71 SADQTAKLWNVET   83 (305)
Q Consensus        71 ~~dg~v~vwd~~~   83 (305)
                      ..|+.|++||+..
T Consensus       146 tsD~~Ir~yDl~~  158 (452)
T 3pbp_A          146 KEDDTITMFDILN  158 (452)
T ss_dssp             ETTSCEEEEETTC
T ss_pred             ecCCEEEEEEccc
Confidence            9999999999986

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.21  E-value=0.055  Score=42.97  Aligned_cols=241  Identities=15%  Similarity=0.086  Sum_probs=125.6

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee--eEEec----CCCcceEEEEEcCC---CcEEEEE---eCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYR----GHNGAVWCCDVSRD---SMTLITG---SAD   73 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~----~~~~~v~~i~~~~~---~~~l~s~---~~d   73 (305)
                      +...-.....|+|.|+|+++++--..|.|++++..+++.  +..+.    ........|+++|+   ...|+..   ..+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            333445678999999999777765589999987655543  22221    23467899999995   3344332   234


Q ss_pred             CcEEEEecCCC----------CeeE-EEe--eCCCceEEEEecCCceEEEeCCcceee------eeeEEEEEeecccCCC
Q 021925           74 QTAKLWNVETG----------AQLF-TFN--FDSPARSVDFAVGDKLAVITTDPFMEL------NSAIHVKRIARDPADQ  134 (305)
Q Consensus        74 g~v~vwd~~~~----------~~~~-~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  134 (305)
                      +.|.-|.+..+          +.+. .+.  .......+.|.|++.+.+...+.....      .....++.+.......
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence            55666665542          1111 111  122456799999998777654422110      1122333333221100


Q ss_pred             C---C-ceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCcE------------------eeeeccccCCc
Q 021925          135 G---G-ESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKL------------------LKESDKETGHK  191 (305)
Q Consensus       135 ~---~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------------------~~~~~~~~~~~  191 (305)
                      .   . .....-.+| .....++|+|++++.++=. .|+.=.|--+..+..                  +..+.   .+.
T Consensus       187 ~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~---~~~  262 (347)
T 3das_A          187 PGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS---TDE  262 (347)
T ss_dssp             TTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC---TTT
T ss_pred             CCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC---CCC
Confidence            0   0 011112233 3456799999877555432 233222222222211                  11110   111


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE---EEEe--eCCCeeEEEecCCCCcEEEee
Q 021925          192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI---KTYV--TERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~--~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      .....++|. +|..+...-..+.|....+.....+   ..+-  ...++..++..|||.+.++..
T Consensus       263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            355667776 3555555555566766666554321   1121  235789999999998766654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.13  E-value=0.0018  Score=57.03  Aligned_cols=172  Identities=9%  Similarity=-0.029  Sum_probs=93.3

Q ss_pred             CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925           73 DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (305)
Q Consensus        73 dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (305)
                      .+.|+..++.+.+....+.....+..++|.+.+..++.+....    ..+....+....  ........+.........+
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~----~~I~~~~~~g~~--~~~~~~~~i~~~~~~P~gl  458 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ----RMICSTQLDRAH--GVSSYDTVISRDIQAPDGL  458 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTT----TSBEEEESCCCC--C-CCCCCBCCSCC--CCCE
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCC----CeEEEEecCCCC--CCcceEEEEeCCCCCcceE
Confidence            3578888887766554444556677899998776666654321    122222221100  0001111111112234568


Q ss_pred             EEcCCCCEEE-EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC-C-CeEEEEEcCCceEEEEE
Q 021925          153 VWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-D-KSAKLWDARTLELIKTY  229 (305)
Q Consensus       153 ~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~  229 (305)
                      ++.+.+..|+ +-...+.|.+.++........+.   ........++++|.+..|+.+.. . +.|...++.... ...+
T Consensus       459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l  534 (699)
T 1n7d_A          459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL  534 (699)
T ss_dssp             ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEE
T ss_pred             EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEE
Confidence            8886554444 44457889999987554333222   12244577899986655554442 2 678888775332 2222


Q ss_pred             e--eCCCeeEEEecCCCCcEEEeeCCc
Q 021925          230 V--TERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       230 ~--~~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      .  .-...+.|+|+|++..|+.+....
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~  561 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKL  561 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTT
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCC
Confidence            2  223467899999887777765444

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.09  E-value=0.066  Score=41.66  Aligned_cols=219  Identities=9%  Similarity=-0.023  Sum_probs=99.6

Q ss_pred             CEEEEeeC--CCceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCC----CcEEEEecCCCCeeEEEeeCC
Q 021925           23 DLLFSCAK--DHTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVETGAQLFTFNFDS   94 (305)
Q Consensus        23 ~~l~s~~~--dg~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~   94 (305)
                      .+++.|+.  ...+.+||..+++-...  +......-..+.+  ++..++.|+.+    ..+.++|..+.+-...-..+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            35555654  35788999887764321  1111112222222  56677777754    568889988775433322222


Q ss_pred             C-ceEEEEecCCceEEEeCCc-ceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC------
Q 021925           95 P-ARSVDFAVGDKLAVITTDP-FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE------  166 (305)
Q Consensus        95 ~-v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------  166 (305)
                      + ....+..-++.+.+.++.. .......+..++.....    -..+..+...... .+++. -+++.++.|+.      
T Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~  164 (306)
T 3ii7_A           91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES----WHTKPSMLTQRCS-HGMVE-ANGLIYVCGGSLGNNVS  164 (306)
T ss_dssp             CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE----EEEECCCSSCCBS-CEEEE-ETTEEEEECCEESCTTT
T ss_pred             cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc----eEeCCCCcCCcce-eEEEE-ECCEEEEECCCCCCCCc
Confidence            2 1122223356665555432 22222233333322110    0000000000111 11222 24566666653      


Q ss_pred             ---CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCceEEEEEe--eCCCee
Q 021925          167 ---DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLELIKTYV--TERPVN  236 (305)
Q Consensus       167 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~--~~~~v~  236 (305)
                         -..+.+||+.+.+-...-. .......-..+..  ++++++.|+.+     ..+.+||+.+.+-...-.  ....-.
T Consensus       165 ~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~  241 (306)
T 3ii7_A          165 GRVLNSCEVYDPATETWTELCP-MIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV  241 (306)
T ss_dssp             CEECCCEEEEETTTTEEEEECC-CSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCC
T ss_pred             ccccceEEEeCCCCCeEEECCC-ccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccce
Confidence               3458899998765332211 1111112222222  56677777754     358899988764332211  111111


Q ss_pred             EEEecCCCCcEEEeeCC
Q 021925          237 AVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       237 ~~~~~~~~~~l~~~~~~  253 (305)
                      +++.. ++++++.|+.+
T Consensus       242 ~~~~~-~~~i~v~GG~~  257 (306)
T 3ii7_A          242 KCAAV-GSIVYVLAGFQ  257 (306)
T ss_dssp             EEEEE-TTEEEEEECBC
T ss_pred             eEEEE-CCEEEEEeCcC
Confidence            22222 56677777644

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.06  E-value=0.0079  Score=44.04  Aligned_cols=66  Identities=8%  Similarity=-0.033  Sum_probs=41.7

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee------eEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER------LGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~------~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      ..+++++|+|+|.+.+.  .+|.++-.+..+.+.      -..+-  +-. .-.++.|.|+|.+.++  .||.|.-++.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            46889999999986665  577655555433211      11111  111 1478899999977766  5688877764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.03  E-value=0.14  Score=44.38  Aligned_cols=201  Identities=11%  Similarity=0.011  Sum_probs=111.8

Q ss_pred             cceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCCCeeE
Q 021925           11 RPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      ..+.+++|++.+..|+ +-...+.|+.++.........+...-.....+++.+. ++..++-+..+.|.+.++.......
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~  428 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI  428 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence            3467888988544444 4445678888887654433333333345678899874 4455555567889999987554322


Q ss_pred             EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-
Q 021925           89 TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-  166 (305)
Q Consensus        89 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  166 (305)
                      ... .-.....+++.|....++.+.-+.     ...+......   . ..........-...+.++++++++.|+.+.. 
T Consensus       429 l~~~~l~~P~~iavdp~~G~ly~tD~g~-----~~~I~r~~~d---G-~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~  499 (619)
T 3s94_A          429 LISEDLEEPRAIVLDPMVGYMYWTDWGE-----IPKIERAALD---G-SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAK  499 (619)
T ss_dssp             EECTTCCSEEEEEEETTTTEEEEEECSS-----SCEEEEEETT---S-CSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCCeeeEEEEcCCCcEEEecCCC-----CCEEEEEccC---C-CccEEEEeCCCCCCeeeEEcccCCEEEEEECC
Confidence            222 335678999999744444432111     1122222111   1 1112222334456788999997777776654 


Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  224 (305)
                      .+.|...++.... .+.+..  ........++...+ .+..+-...+.|...|..++.
T Consensus       500 ~~~I~~~~~dG~~-~~~~~~--~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          500 TDKIEVMNTDGTG-RRVLVE--DKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             TTEEEEEESSSCC-CEEEEE--CCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred             CCEEEEEecCCCc-eEEEec--cCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence            5789999986433 222211  11112234455433 344444456678888877773

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.00  E-value=0.082  Score=41.15  Aligned_cols=191  Identities=8%  Similarity=0.030  Sum_probs=91.7

Q ss_pred             CCCEEEEeeCC----CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCC------CcEEEEecCCCCeeE
Q 021925           21 DGDLLFSCAKD----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGAQLF   88 (305)
Q Consensus        21 ~~~~l~s~~~d----g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d------g~v~vwd~~~~~~~~   88 (305)
                      ++..++.|+.+    ..+.+||..+++-...  +......-..+.+  +++.++.|+.+      ..+.+||..+.+-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            56677777754    5688889887754322  2211111222222  66677777765      458889988765332


Q ss_pred             EEeeCCC-ceEEEEecCCceEEEeCCcceee----eeeEEEEEeecccCCCCCceEEEEec-cCC-CeeEEEEcCCCCEE
Q 021925           89 TFNFDSP-ARSVDFAVGDKLAVITTDPFMEL----NSAIHVKRIARDPADQGGESVLILKG-PQG-RINRAVWGPLNRTI  161 (305)
Q Consensus        89 ~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~i~~~~~~~~~~~l  161 (305)
                      .-..+.+ ....+..-++++.+.++......    ...+..++....       .-..+.. ... .-.++... +++.+
T Consensus       133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~-------~W~~~~~~p~~r~~~~~~~~-~~~i~  204 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE-------TWTELCPMIEARKNHGLVFV-KDKIF  204 (306)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT-------EEEEECCCSSCCBSCEEEEE-TTEEE
T ss_pred             CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC-------eEEECCCccchhhcceEEEE-CCEEE
Confidence            2222211 11122223555555554221111    222333332211       0111110 011 11122222 56666


Q ss_pred             EEeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 021925          162 ISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE  224 (305)
Q Consensus       162 ~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  224 (305)
                      +.|+.+     ..+.+||+.+.+-...-. ..........+.+  ++++++.|+.+     ..+.+||..+.+
T Consensus       205 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          205 AVGGQNGLGGLDNVEYYDIKLNEWKMVSP-MPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EECCEETTEEBCCEEEEETTTTEEEECCC-CSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EEeCCCCCCCCceEEEeeCCCCcEEECCC-CCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            776643     468999998765332211 1111222233333  66778888754     468889988764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.85  E-value=0.11  Score=40.34  Aligned_cols=194  Identities=12%  Similarity=0.108  Sum_probs=89.4

Q ss_pred             CCCEEEEeeCC-----CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCCC-----cEEEEecCCCCeeE
Q 021925           21 DGDLLFSCAKD-----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSADQ-----TAKLWNVETGAQLF   88 (305)
Q Consensus        21 ~~~~l~s~~~d-----g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~dg-----~v~vwd~~~~~~~~   88 (305)
                      ++..++.|+.+     ..+.+||..+.+-...  +......-..+.+  +++.++.|+.++     .+.+||+.+.+-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            56677777654     3578889887653322  1111112222222  566777777653     47788887665333


Q ss_pred             EEeeCCCce-EEEEecCCceEEEeCCcce--eeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925           89 TFNFDSPAR-SVDFAVGDKLAVITTDPFM--ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus        89 ~~~~~~~v~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      .-..+.+.. ..+..-++++.+.++....  .....+..++.....    -..+..+...... .+++. -+++.++.|+
T Consensus       139 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG  212 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE----WTYIAEMSTRRSG-AGVGV-LNNLLYAVGG  212 (302)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTE----EEEECCCSSCCBS-CEEEE-ETTEEEEECC
T ss_pred             cCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCc----EEECCCCcccccc-ccEEE-ECCEEEEECC
Confidence            222222211 1122235555555432111  112223333322110    0000000011111 12222 2466777776


Q ss_pred             CC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCceE
Q 021925          166 ED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLEL  225 (305)
Q Consensus       166 ~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~  225 (305)
                      .+     ..+.+||+.+.+-...-... ........+.+  ++++++.|+.++     .+.+||+.+.+-
T Consensus       213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          213 HDGPLVRKSVEVYDPTTNAWRQVADMN-MCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             BSSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCCCcccceEEEEeCCCCCEeeCCCCC-CccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            54     46899999876543221111 11111222222  667778887654     488888876643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.80  E-value=0.34  Score=45.31  Aligned_cols=73  Identities=12%  Similarity=-0.048  Sum_probs=49.8

Q ss_pred             ccceEEEEEcCC------CCEEEEeeC-CCceEEEEcCCCeeeEEecC-CCcceEEEEEcC--CCcEEEEEeCCCcEEEE
Q 021925           10 ERPLTYLKYNKD------GDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDVSR--DSMTLITGSADQTAKLW   79 (305)
Q Consensus        10 ~~~v~~~~~~~~------~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~--~~~~l~s~~~dg~v~vw   79 (305)
                      .+.|.|+++.|.      ++++|.|.. |++|+|+++++.+.+....- ......++.+..  ...+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999863      368999986 99999999998766543321 112334444432  34578888899998766


Q ss_pred             ecC
Q 021925           80 NVE   82 (305)
Q Consensus        80 d~~   82 (305)
                      .+.
T Consensus       633 ~~d  635 (1158)
T 3ei3_A          633 GLN  635 (1158)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            553

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.78  E-value=0.072  Score=42.57  Aligned_cols=103  Identities=10%  Similarity=0.002  Sum_probs=62.1

Q ss_pred             cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCC---CCEEEEEeC-C-----C
Q 021925          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAAD---GSHFLTGSL-D-----K  213 (305)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-d-----g  213 (305)
                      .-.....++|.|+|++++ +..+|.|++++  .++.  +..+............++++|+   +..|..+.. +     +
T Consensus        29 ~l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           29 GLEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CCSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            345677899999998554 45679999998  3432  2222111122456889999998   445544433 2     6


Q ss_pred             eEEEEEcCCce-----EE-EEEee-C---CCeeEEEecCCCCcEEEe
Q 021925          214 SAKLWDARTLE-----LI-KTYVT-E---RPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       214 ~i~iwd~~~~~-----~~-~~~~~-~---~~v~~~~~~~~~~~l~~~  250 (305)
                      .|..++....+     .+ ..+.. .   .....++|.|+|.+.++.
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            78888876431     11 11221 1   134789999999655543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.019  Score=45.45  Aligned_cols=69  Identities=16%  Similarity=0.103  Sum_probs=46.7

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecCC-CcceEEEEE--cC-CCcEEEEE-eCCCcEEEEecCCCCeeEEEe
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRGH-NGAVWCCDV--SR-DSMTLITG-SADQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~i~~--~~-~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~   91 (305)
                      ..++.++.||.|.-.|.++|+.+.+++.. ..++....-  .+ ++..++.. +.||.|..++.++|.....+.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~   84 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLS   84 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeec
Confidence            47888999999999999999999888743 123222110  01 23333333 689999999998886655554

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.73  E-value=0.051  Score=43.42  Aligned_cols=55  Identities=16%  Similarity=0.084  Sum_probs=28.2

Q ss_pred             cEEEEeCCCCc--EeeeeccccCCccceEEEEEcCCCCEEEEEeCCC------eEEEEEcCCceEEEE
Q 021925          169 IVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDK------SAKLWDARTLELIKT  228 (305)
Q Consensus       169 ~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~  228 (305)
                      .+.+||+.+.+  .+..+..   ....-.++.  .++++++.|+.++      .|.++++++++.+..
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQ---GRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CCEEEECC---CEEEEECSS---CCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eEEEEecCCCceeeCCCCCC---CcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            57889988654  3333321   111222222  3677888888653      366667777765544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.69  E-value=0.23  Score=41.89  Aligned_cols=236  Identities=9%  Similarity=0.003  Sum_probs=130.0

Q ss_pred             EEEeeCCCceEEEEcCCCeeeEEecCC-------------------------CcceE--EEEEcC---CCcEEEEEeC-C
Q 021925           25 LFSCAKDHTPTVWFADNGERLGTYRGH-------------------------NGAVW--CCDVSR---DSMTLITGSA-D   73 (305)
Q Consensus        25 l~s~~~dg~v~iw~~~~~~~~~~~~~~-------------------------~~~v~--~i~~~~---~~~~l~s~~~-d   73 (305)
                      +.+|+..|.|+|+-+.+++.++.+.-.                         .+...  .+.+..   ||++|..-.. +
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            678899999999999999988876310                         11111  233322   5677777664 6


Q ss_pred             CcEEEEecCCCCeeEEEe--eCCCceEEEEe--cCCceEEEeCCcceeeeeeEE--------EEEeecccCCCCCceEEE
Q 021925           74 QTAKLWNVETGAQLFTFN--FDSPARSVDFA--VGDKLAVITTDPFMELNSAIH--------VKRIARDPADQGGESVLI  141 (305)
Q Consensus        74 g~v~vwd~~~~~~~~~~~--~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  141 (305)
                      ..|..-+++..++-..+.  ....+..+.+.  |...++++.+.-..-+.+...        .+.+.........+....
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q  232 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ  232 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence            778888888888766666  45567777776  677777776642221111000        001111111112222111


Q ss_pred             EeccCCCeeEEEEcCCCCEEEEeeCCC---------------cEEEEeCCC-------Cc--E-----eeeecccc----
Q 021925          142 LKGPQGRINRAVWGPLNRTIISAGEDA---------------IVRIWDTET-------GK--L-----LKESDKET----  188 (305)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~-------~~--~-----~~~~~~~~----  188 (305)
                      +.- .+....+...+++++.++.+.+.               .+.++|+..       ++  .     +..+....    
T Consensus       233 v~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~  311 (638)
T 3sbq_A          233 VIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK  311 (638)
T ss_dssp             EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred             EEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence            111 22333455566777766654332               255555421       10  0     11111000    


Q ss_pred             --------CCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCce-------------EEEEEeeCCCeeEEEecCCCCc
Q 021925          189 --------GHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE-------------LIKTYVTERPVNAVTMSPLLDH  246 (305)
Q Consensus       189 --------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~  246 (305)
                              .-......+..+|||++++.++ .+.++.++|+++..             ...+...+......+|.++|..
T Consensus       312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~a  391 (638)
T 3sbq_A          312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNA  391 (638)
T ss_dssp             CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred             CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCce
Confidence                    1123345678899999987655 58899999988531             1334445566788999999944


Q ss_pred             EEEeeCCcEEEEEEe
Q 021925          247 VCIGEPQTIKFMLLV  261 (305)
Q Consensus       247 l~~~~~~~~~~~~~~  261 (305)
                      ..+---|+....|.+
T Consensus       392 YTtlfidSqvvkWni  406 (638)
T 3sbq_A          392 YTTLFIDSQVVKWNM  406 (638)
T ss_dssp             EEEETTTTEEEEEEH
T ss_pred             EeeeeecceEEEEec
Confidence            444456666444433

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.57  E-value=0.21  Score=39.87  Aligned_cols=69  Identities=13%  Similarity=0.144  Sum_probs=42.9

Q ss_pred             CCeeEEEEcC-------CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeE
Q 021925          147 GRINRAVWGP-------LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSA  215 (305)
Q Consensus       147 ~~i~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i  215 (305)
                      ..+..+.+..       +++++++....+.|...++..++..............+..+++.|||.++++.. .+|.|
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence            3566777764       466666666778888888876544332211112235789999999998665433 34543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.44  E-value=0.35  Score=40.86  Aligned_cols=227  Identities=13%  Similarity=0.039  Sum_probs=131.4

Q ss_pred             CCCEEEEeeC-CCceEEEEcCCCeeeEEecC-CCcceEEEEEc--CCCcEEEEEeC-------CCc-E--------EE--
Q 021925           21 DGDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDVS--RDSMTLITGSA-------DQT-A--------KL--   78 (305)
Q Consensus        21 ~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~--~~~~~l~s~~~-------dg~-v--------~v--   78 (305)
                      ||++|..-.. +..|-..+++..+.-+.+.- ....+.++.|.  |+..+++.++.       ||. +        .+  
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~  220 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN  220 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence            6788887653 56777778888776555542 45678888886  67778877764       222 1        12  


Q ss_pred             -EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee----------eeeEEEEEeecccC--------CCC----
Q 021925           79 -WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL----------NSAIHVKRIARDPA--------DQG----  135 (305)
Q Consensus        79 -wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--------~~~----  135 (305)
                       .|.++.+....+..+.....+...+++.+.+..+-+.-..          ...+.+.++.+...        ...    
T Consensus       221 ~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv  300 (638)
T 3sbq_A          221 AIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKT  300 (638)
T ss_dssp             EEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred             EEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCe
Confidence             2444455555555566666677777888777764311000          00111111110000        000    


Q ss_pred             -----------CceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCC------cE-------eeeeccccCC
Q 021925          136 -----------GESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETG------KL-------LKESDKETGH  190 (305)
Q Consensus       136 -----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~------~~-------~~~~~~~~~~  190 (305)
                                 ......+-.-......+..+|||++++.++. +.++.++|.+.-      +.       ....+    .
T Consensus       301 ~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e----~  376 (638)
T 3sbq_A          301 PVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE----L  376 (638)
T ss_dssp             CEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB----C
T ss_pred             eEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc----C
Confidence                       1111122222344567889999999887764 889999998742      11       11221    3


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----------eEEEEEeeCCCeeEEE------ecCCCCcEEEee
Q 021925          191 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----------ELIKTYVTERPVNAVT------MSPLLDHVCIGE  251 (305)
Q Consensus       191 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~v~~~~------~~~~~~~l~~~~  251 (305)
                      .-.....+|.++|.-..+--.|..|.-|++...          ..+..+...-.+-.+.      -.|+|++|++..
T Consensus       377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             CCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            445678899999966666668999999998753          3445555333333332      357888887764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.41  E-value=0.42  Score=41.50  Aligned_cols=203  Identities=7%  Similarity=-0.072  Sum_probs=118.8

Q ss_pred             EEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCCCCeeEEEeeC-CCceEEE
Q 021925           24 LLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFD-SPARSVD  100 (305)
Q Consensus        24 ~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~  100 (305)
                      +|+.+ ....|+..++++.+....+. ..-..+..++|++.+..|+ +-..++.|..+++........+... ..+..++
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA   86 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA   86 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence            44443 45688888988655433332 1234678999998655555 4455788999998765544444432 4577899


Q ss_pred             EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee--CCCcEEEEeCCCC
Q 021925          101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETG  178 (305)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~  178 (305)
                      +.+.+..++.+....    ..+...++.      ...........-.....++++|....|+...  ..+.|...++...
T Consensus        87 vD~~~~~LY~tD~~~----~~I~v~~~d------G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~  156 (628)
T 4a0p_A           87 VDWLGKNLYWADTGT----NRIEVSKLD------GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS  156 (628)
T ss_dssp             EETTTTEEEEEETTT----TEEEEEETT------STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             EEeCCCEEEEEECCC----CEEEEEecC------CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC
Confidence            987655555443211    122222221      1111122223445678999999766666554  3578888888644


Q ss_pred             cEeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925          179 KLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (305)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~  242 (305)
                      .. ..+.   ..-...+.+++++++..|+.+. ..+.|...|+..... ..+. .......+++..
T Consensus       157 ~~-~~l~---~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~  217 (628)
T 4a0p_A          157 ER-TTLV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ  217 (628)
T ss_dssp             SC-EEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET
T ss_pred             ce-EEEE---CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC
Confidence            33 2222   2345678999999776666554 567899999875433 2222 223345666654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.31  E-value=0.37  Score=39.95  Aligned_cols=54  Identities=7%  Similarity=-0.040  Sum_probs=36.1

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee--EEecC------CCcceEEEEEcCC
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRG------HNGAVWCCDVSRD   63 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~------~~~~v~~i~~~~~   63 (305)
                      -.....|+|.|+|+++++-...+.|++++..+++..  ..+..      ..+....|+|+|+
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            445679999999997776544456888876555432  22321      2456789999995

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.18  E-value=0.64  Score=41.38  Aligned_cols=218  Identities=12%  Similarity=0.081  Sum_probs=122.1

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   90 (305)
                      ..|.++.-..+| .|-.|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -|..+|..+++.. .+
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~  136 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SF  136 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EE
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Ee
Confidence            458888777776 455566565 788998776543211112335777754 355 45556665 5888898765543 33


Q ss_pred             e------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe------ccCCCeeEEEEcCCC
Q 021925           91 N------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK------GPQGRINRAVWGPLN  158 (305)
Q Consensus        91 ~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~  158 (305)
                      .      ....+.++....++.+.+....+...+....              .....+.      .....|.++...+++
T Consensus       137 ~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~~i~~d~~~  202 (758)
T 3ott_A          137 DTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSN--------------GKFEGIPLPVHSSQSNLFVNSLLEDTTR  202 (758)
T ss_dssp             CHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTT--------------TEEEEECCCCCTTCSSCCEEEEEEETTT
T ss_pred             ccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCC--------------CceEEecCCCccccccceeEEEEEECCC
Confidence            1      1235667766667776665443211111100              0011110      012347788888777


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--------
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--------  230 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------  230 (305)
                      ..|..|+. +-+..+|..+++... +..  -....|.++...++|.+.+ |+.+ -+.+++..+++......        
T Consensus       203 ~~lWigt~-~Gl~~~~~~~~~~~~-~~~--l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l  276 (758)
T 3ott_A          203 QCVWIGTE-GYLFQYFPSTGQIKQ-TEA--FHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSL  276 (758)
T ss_dssp             TEEEEEEE-EEEEEEETTTTEEEE-EEE--EEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSC
T ss_pred             CEEEEEEC-CCCeEEcCCCCeEEe-ccC--CCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcC
Confidence            76666664 458889987765332 221  1234688888888876544 4444 58888877654322111        


Q ss_pred             eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          231 TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       231 ~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ....|.++....+|.+ -+|+..+.
T Consensus       277 ~~~~i~~i~~D~~g~l-WiGT~~Gl  300 (758)
T 3ott_A          277 TNNIIWNIFADQEHNI-WLGTDYGI  300 (758)
T ss_dssp             SCSCEEEEEECTTCCE-EEEESSSE
T ss_pred             CcCeEEEEEEcCCCCE-EEEeCCcc
Confidence            1234788888887764 44554553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.15  E-value=0.33  Score=37.76  Aligned_cols=193  Identities=11%  Similarity=0.057  Sum_probs=89.9

Q ss_pred             CCCEEEEeeC----C-----CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCC-----CcEEEEecCCC
Q 021925           21 DGDLLFSCAK----D-----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETG   84 (305)
Q Consensus        21 ~~~~l~s~~~----d-----g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~vwd~~~~   84 (305)
                      +++.++.|+.    +     ..+.+||..+.+-...  +......-..+.+  +++.++.|+.+     ..+.+||..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5666676665    2     4688889887653321  1111112222222  56677777643     35888888766


Q ss_pred             CeeEEEeeCCC--ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           85 AQLFTFNFDSP--ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        85 ~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      +-...-..+.+  -.++.. -++.+.+.++.........+..++.....-    ..+..+....... +++.. +++.++
T Consensus       148 ~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~-~~~~~-~~~iyv  220 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAV-LNRLLYAVGGFDGTNRLNSAECYYPERNEW----RMITAMNTIRSGA-GVCVL-HNCIYA  220 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEE----EECCCCSSCCBSC-EEEEE-TTEEEE
T ss_pred             eEeECCCCCccccceEEEE-ECCEEEEEeCCCCCCcCceEEEEeCCCCeE----eeCCCCCCccccc-eEEEE-CCEEEE
Confidence            43222121211  112222 255555555432222223333333221100    0000000111111 22222 566777


Q ss_pred             EeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCceE
Q 021925          163 SAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLEL  225 (305)
Q Consensus       163 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~  225 (305)
                      .|+.+     ..+.+||+.+.+-...-. ..........+..  ++++++.|+.+     ..+.+||+.+.+-
T Consensus       221 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          221 AGGYDGQDQLNSVERYDVETETWTFVAP-MKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             ECCBCSSSBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             EeCCCCCCccceEEEEeCCCCcEEECCC-CCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence            77654     569999998765433211 1111112222222  56777787754     3578888876643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.15  E-value=0.46  Score=39.40  Aligned_cols=111  Identities=8%  Similarity=0.112  Sum_probs=63.9

Q ss_pred             EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe--eeecccc---CCccceEEEEEcCC---CCEEEEEe-C
Q 021925          141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDKET---GHKKTITSLAKAAD---GSHFLTGS-L  211 (305)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~-~  211 (305)
                      .+...-.....++|.|+|+++++-...+.|++++..+++..  ..+....   ........|+|+|+   +..|..+. .
T Consensus        21 ~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~  100 (454)
T 1cru_A           21 VILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF  100 (454)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             EEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence            33334456789999999997766544457999887655432  2222110   13456789999995   44444333 2


Q ss_pred             ------------CCeEEEEEcCCc-------eEEE-EEe--eCCCeeEEEecCCCCcEEEee
Q 021925          212 ------------DKSAKLWDARTL-------ELIK-TYV--TERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       212 ------------dg~i~iwd~~~~-------~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~  251 (305)
                                  ...|.-++....       +.+. .+.  .......++|.|||.+.++.+
T Consensus       101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                        234655654321       1111 121  123468999999998666543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.11  E-value=0.35  Score=37.70  Aligned_cols=196  Identities=9%  Similarity=0.016  Sum_probs=88.5

Q ss_pred             cCCCCEEEEeeC----C-------CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCC--------CcEE
Q 021925           19 NKDGDLLFSCAK----D-------HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD--------QTAK   77 (305)
Q Consensus        19 ~~~~~~l~s~~~----d-------g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d--------g~v~   77 (305)
                      ..+++.++.|+.    +       ..+..||..+++-...  +......-..+.+  +++.++.|+.+        ..+.
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEE
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEE
Confidence            346777777773    1       1267788877654221  1111111112222  56666777632        4588


Q ss_pred             EEecCCCCeeEEEeeCCC-ceEEEEecCCceEEEeCC-cceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925           78 LWNVETGAQLFTFNFDSP-ARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (305)
Q Consensus        78 vwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (305)
                      ++|..+.+-...-..+.+ ....+..-++++.+.++. ........+..++.....-    ..+..+...... .+++. 
T Consensus       121 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~-~~~~~-  194 (315)
T 4asc_A          121 CYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW----KELAPMQTARSL-FGATV-  194 (315)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE----EECCCCSSCCBS-CEEEE-
T ss_pred             EECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE----EECCCCCCchhc-eEEEE-
Confidence            899887642221112221 122223345555555543 2222223333333321100    000000001111 11222 


Q ss_pred             CCCCEEEEeeCCC-----cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC--------------eEE
Q 021925          156 PLNRTIISAGEDA-----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--------------SAK  216 (305)
Q Consensus       156 ~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~  216 (305)
                      -+++.++.|+.++     .+.+||+.+.+-...-. ..........+.+  ++++++.|+.++              .+.
T Consensus       195 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~  271 (315)
T 4asc_A          195 HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA-FPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIW  271 (315)
T ss_dssp             ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC-CSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             ECCEEEEEeccCCCCccceEEEEECCCCeEEECCC-CCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEE
Confidence            2566777777544     58899998765433221 1111122222222  567777777642              366


Q ss_pred             EEEcCCceE
Q 021925          217 LWDARTLEL  225 (305)
Q Consensus       217 iwd~~~~~~  225 (305)
                      +||+++.+-
T Consensus       272 ~yd~~~~~W  280 (315)
T 4asc_A          272 RYNEEEKKW  280 (315)
T ss_dssp             EEETTTTEE
T ss_pred             EecCCCChh
Confidence            777776543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.09  E-value=0.4  Score=38.26  Aligned_cols=193  Identities=11%  Similarity=0.049  Sum_probs=99.5

Q ss_pred             cceEEEEEcCC---CCEEEEeeC----C----CceEEEEcCCC-------eee-EEecC-CCcceEEEEEcCCCcEEEEE
Q 021925           11 RPLTYLKYNKD---GDLLFSCAK----D----HTPTVWFADNG-------ERL-GTYRG-HNGAVWCCDVSRDSMTLITG   70 (305)
Q Consensus        11 ~~v~~~~~~~~---~~~l~s~~~----d----g~v~iw~~~~~-------~~~-~~~~~-~~~~v~~i~~~~~~~~l~s~   70 (305)
                      .....|+++|+   +..|+.+..    +    ..|..++....       +.+ ..+.. .......++|.|||.+.++.
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            45789999997   444444332    3    56777776543       111 11221 11124679999999876664


Q ss_pred             eCC-------------CcEEEEecCCC---------CeeEEEeeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEe
Q 021925           71 SAD-------------QTAKLWNVETG---------AQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRI  127 (305)
Q Consensus        71 ~~d-------------g~v~vwd~~~~---------~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  127 (305)
                      +..             |.|.-.+....         ..+... .-.....++|.| .+.+.++-.....  ...  +..+
T Consensus       153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~-G~rnp~Gla~d~~~g~l~v~d~g~~~--~de--i~~i  227 (354)
T 3a9g_A          153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSY-GHRNPQGIDWHRASGVMVATEHGPVG--HDE--VNII  227 (354)
T ss_dssp             CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEE-CCSCCCEEEECTTTCCEEEEECCSSS--CCE--EEEE
T ss_pred             CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEE-ccCCcceEEEeCCCCCEEEEecCCCC--CcE--EEEe
Confidence            432             34554554321         112111 223466899999 5665555433211  011  1111


Q ss_pred             ecccC------------CCCCceEEEEeccCCCeeEEEEc-------CCCCEEEEeeCCCcEEEEeCCCC-cEe--eeec
Q 021925          128 ARDPA------------DQGGESVLILKGPQGRINRAVWG-------PLNRTIISAGEDAIVRIWDTETG-KLL--KESD  185 (305)
Q Consensus       128 ~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~  185 (305)
                      .....            .....+...+.........+++.       .+++++++.-..+.|...++... +..  ..+.
T Consensus       228 ~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~  307 (354)
T 3a9g_A          228 LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF  307 (354)
T ss_dssp             CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC
T ss_pred             cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec
Confidence            11000            00012222331223456778873       45666666666778888888753 222  1221


Q ss_pred             cccCCccceEEEEEcCCCCEEEEEe
Q 021925          186 KETGHKKTITSLAKAADGSHFLTGS  210 (305)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~l~~~~  210 (305)
                        .+....+..+++.|||.+.++..
T Consensus       308 --~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          308 --KNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             --TTTSCCEEEEEECTTSCEEEEEC
T ss_pred             --cCCCCCeeEEEECCCCcEEEEEe
Confidence              12245788999999997666554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.08  E-value=0.69  Score=40.76  Aligned_cols=224  Identities=10%  Similarity=0.035  Sum_probs=105.2

Q ss_pred             CCCCEEEEeeCC----CceEEEEcCCCeeeEEe-c-------CCCcceEEEEEcCCCcEEEEEeCC------CcEEEEec
Q 021925           20 KDGDLLFSCAKD----HTPTVWFADNGERLGTY-R-------GHNGAVWCCDVSRDSMTLITGSAD------QTAKLWNV   81 (305)
Q Consensus        20 ~~~~~l~s~~~d----g~v~iw~~~~~~~~~~~-~-------~~~~~v~~i~~~~~~~~l~s~~~d------g~v~vwd~   81 (305)
                      .++..++.|+.+    ..+.+||..+++....- .       .....-..+.+..+++.++.||.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    46888898877543322 1       111122233332267777777754      34788888


Q ss_pred             CCCCeeEEEeeC--CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE---EeccCCCeeEEEEcC
Q 021925           82 ETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI---LKGPQGRINRAVWGP  156 (305)
Q Consensus        82 ~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~  156 (305)
                      .+.+-...-..+  ..-.+++...++.+.+.++.....   .+..++.....-    ..+..   ..........+.+..
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W----~~~~~~g~~p~~r~~~~a~v~~~  548 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIF----KDVTPKDEFFQNSLVSAGLEFDP  548 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEE----EECCCSSGGGGSCCBSCEEEEET
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCce----EEccCCCCCCCcccceeEEEEeC
Confidence            775322211111  122233333466666665532211   233333221100    00000   001111223355555


Q ss_pred             C-CCEEEEeeC--C-----CcEEEEeCCCCcE-----eeeecc-ccCCccceEEEEEcCCCCEEEEEeCC--------Ce
Q 021925          157 L-NRTIISAGE--D-----AIVRIWDTETGKL-----LKESDK-ETGHKKTITSLAKAADGSHFLTGSLD--------KS  214 (305)
Q Consensus       157 ~-~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~  214 (305)
                      + ++.++.|+.  +     ..+.+||+.+.+.     -..+.. .......... +...++++++.|+.+        ..
T Consensus       549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~  627 (695)
T 2zwa_A          549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI-KYITPRKLLIVGGTSPSGLFDRTNS  627 (695)
T ss_dssp             TTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE-EEEETTEEEEECCBCSSCCCCTTTS
T ss_pred             CCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE-EEeCCCEEEEECCccCCCCCCCCCe
Confidence            5 566777765  2     4589999987761     111111 0011111222 233336777777743        45


Q ss_pred             EEEEEcCCceEEEEEeeCCCe----------eEEEecCCCCcEEEeeC
Q 021925          215 AKLWDARTLELIKTYVTERPV----------NAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       215 i~iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~l~~~~~  252 (305)
                      +.+||+.+.+-. ........          .++...+++++++.||+
T Consensus       628 v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          628 IISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             EEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred             EEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence            999999877554 22211111          33444566677777764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.98  E-value=0.41  Score=37.35  Aligned_cols=217  Identities=9%  Similarity=0.025  Sum_probs=98.2

Q ss_pred             EEEEeeCCCceEEEEcCCCeeeE-EecCCCcceEEEEEcCCCcEEEEEeC----C-------CcEEEEecCCCCeeEEEe
Q 021925           24 LLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSA----D-------QTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        24 ~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~----d-------g~v~vwd~~~~~~~~~~~   91 (305)
                      +++.|+  ..+.+||..+++-.. .+..............+++.++.|+.    +       ..+.+||..+.+-...-.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344455  578999998877432 22211122223333446777777773    1       126778887665322111


Q ss_pred             eCCCc--eEEEEecCCceEEEeCCc---ceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925           92 FDSPA--RSVDFAVGDKLAVITTDP---FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (305)
Q Consensus        92 ~~~~v--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  166 (305)
                      .+.+-  .+++. -++.+.+.++..   .......+...+.....-    +.+..+...... .+++ .-+++.++.|+.
T Consensus        85 ~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~  157 (315)
T 4asc_A           85 LPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW----GESDPLPYVVYG-HTVL-SHMDLVYVIGGK  157 (315)
T ss_dssp             BSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEE----EECCCCSSCCBS-CEEE-EETTEEEEECCB
T ss_pred             CCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcE----eECCCCCCcccc-eeEE-EECCEEEEEeCC
Confidence            22211  12222 255555555421   112222333333321100    000000011111 1122 234566677765


Q ss_pred             -C-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCceEEEEEe--eCC
Q 021925          167 -D-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLELIKTYV--TER  233 (305)
Q Consensus       167 -d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~--~~~  233 (305)
                       +     ..+.+||+.+.+-...-. .......-..+.+  ++++++.|+.++     .+.+||+.+.+-...-.  ...
T Consensus       158 ~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r  234 (315)
T 4asc_A          158 GSDRKCLNKMCVYDPKKFEWKELAP-MQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER  234 (315)
T ss_dssp             CTTSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred             CCCCcccceEEEEeCCCCeEEECCC-CCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence             2     468999998765332211 1111112222222  667778887654     58889988764433222  111


Q ss_pred             CeeEEEecCCCCcEEEeeCC
Q 021925          234 PVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       234 ~v~~~~~~~~~~~l~~~~~~  253 (305)
                      .-.+++ .-++++++.|+.+
T Consensus       235 ~~~~~~-~~~~~l~v~GG~~  253 (315)
T 4asc_A          235 SSLSLV-SLVGTLYAIGGFA  253 (315)
T ss_dssp             BSCEEE-EETTEEEEEEEEE
T ss_pred             cceeEE-EECCEEEEECCcc
Confidence            112222 2356677777653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.88  E-value=0.5  Score=37.55  Aligned_cols=113  Identities=10%  Similarity=-0.040  Sum_probs=68.0

Q ss_pred             EEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe--eeec-cccCCccceEEEEEcCC----CCEEEEE--
Q 021925          139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESD-KETGHKKTITSLAKAAD----GSHFLTG--  209 (305)
Q Consensus       139 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~~~~~~~v~~~~~~~~----~~~l~~~--  209 (305)
                      +..+...-.....++|.|+|+++++--..|.|++++...++..  ..+. ...........|+++|+    +.+.++-  
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            3444455667889999999997776655899999987655432  2221 11123567899999995    4333332  


Q ss_pred             eCCCeEEEEEcCCc----------eEEE-EEe--eCCCeeEEEecCCCCcEEEee
Q 021925          210 SLDKSAKLWDARTL----------ELIK-TYV--TERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       210 ~~dg~i~iwd~~~~----------~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      ..++.|.-|.+..+          +.+. .+.  ....-..++|.|||.+.++.+
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            24556666665541          1111 121  112346799999997666544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.76  E-value=0.071  Score=39.10  Aligned_cols=98  Identities=9%  Similarity=-0.075  Sum_probs=61.7

Q ss_pred             CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe------eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL------KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      ..+..++|+|++.+.+.  .+|.++-.+..+....      ..+-. .+- ....++.|.|+|.+.++  .||.|+-++-
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~-~Gw-~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGN-GGW-NQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEEC-SCG-GGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecc-ccc-ccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            46779999998886665  6788777776542211      11100 011 12478899999987777  5799988875


Q ss_pred             CCceEE-----EEEeeC---CCeeEEEecCCCCcEEEe
Q 021925          221 RTLELI-----KTYVTE---RPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       221 ~~~~~~-----~~~~~~---~~v~~~~~~~~~~~l~~~  250 (305)
                      .+...-     ...-..   ..+..+.+.|+|.+-++.
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            331110     011111   357999999999887777

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.58  E-value=0.42  Score=37.79  Aligned_cols=65  Identities=15%  Similarity=0.040  Sum_probs=44.3

Q ss_pred             eCCCceEEEEcCCCeeeEEecC----CCcceEE---EEE-----cCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeC
Q 021925           29 AKDHTPTVWFADNGERLGTYRG----HNGAVWC---CDV-----SRDSMTLITGSADQTAKLWNVETGAQLFTFNFD   93 (305)
Q Consensus        29 ~~dg~v~iw~~~~~~~~~~~~~----~~~~v~~---i~~-----~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~   93 (305)
                      +.||.|..++..+|.....+..    ...++..   ...     ...+..+++++.+|++...|+++|+.+..+...
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            5799999999888765544331    1222221   001     013457889999999999999999999998744

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.56  E-value=0.61  Score=36.26  Aligned_cols=201  Identities=8%  Similarity=-0.015  Sum_probs=105.1

Q ss_pred             EcCCCCEEEEeeC--CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC--------------CcEEEEec
Q 021925           18 YNKDGDLLFSCAK--DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD--------------QTAKLWNV   81 (305)
Q Consensus        18 ~~~~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d--------------g~v~vwd~   81 (305)
                      ++++|..|+....  ++.|...+.+ +.....+..  +.+  --+++++.+|+-+...              ..|+..++
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~--~~~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSN--DTA--MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEE--EEE--EEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccC--Cce--eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            3456666666542  3455555543 333444442  222  3457788888766543              35777777


Q ss_pred             CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      ..++......  .  ....+++++..++.....   ......++.+...     +.....+..+..    ..++|+++.|
T Consensus        96 dg~~~~~l~~--~--~~~~~s~~g~~Iy~~~~~---~~~~~~Iy~~~~d-----Gs~~~~lt~~~~----~~~~~~g~~i  159 (302)
T 3s25_A           96 NGHGSTVLDP--D--PCIYASLIGNYIYYLHYD---TQTATSLYRIRID-----GEEKKKIKNHYL----FTCNTSDRYF  159 (302)
T ss_dssp             TSCCCEEEEC--S--CEEEEEEETTEEEEEEES---SSSCEEEEEEETT-----SCCCEEEESSCC----CCSEEETTEE
T ss_pred             CCCcceEeec--C--CccEEEEeCCEEEEEeec---CCCCceEEEEECC-----CCCeEEEeCCCc----eEeeEECCEE
Confidence            7665333222  1  123677777777665300   0112233333322     122233333322    3467788888


Q ss_pred             EEeeC-CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC--CeEEEEEcCCceEEEEEeeCCCeeEE
Q 021925          162 ISAGE-DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD--KSAKLWDARTLELIKTYVTERPVNAV  238 (305)
Q Consensus       162 ~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~v~~~  238 (305)
                      +-.+. ...|...++..+.....+.   +   ... ..++|++.+|+-...+  ..|..-++..... ..+. ...+  .
T Consensus       160 y~t~~g~~~Iy~~~l~g~~~~~l~~---~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt-~~~~--~  228 (302)
T 3s25_A          160 YYNNPKNGQLYRYDTASQSEALFYD---C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT-EANI--E  228 (302)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEEEC---S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS-CSCE--E
T ss_pred             EEEeCCCceEEEEECCCCCEEEEeC---C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe-CCCc--c
Confidence            86554 6788888987655433332   1   112 2356888888766543  3566667665442 2222 2223  3


Q ss_pred             EecCCCCcEEEe
Q 021925          239 TMSPLLDHVCIG  250 (305)
Q Consensus       239 ~~~~~~~~l~~~  250 (305)
                      .|+|+++.|.-+
T Consensus       229 ~~~~~g~~Iy~~  240 (302)
T 3s25_A          229 HYNVYGSLIFYQ  240 (302)
T ss_dssp             EEEEETTEEEEE
T ss_pred             eEEECCCEEEEE
Confidence            477888877765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.11  E-value=0.89  Score=35.45  Aligned_cols=67  Identities=18%  Similarity=0.263  Sum_probs=35.8

Q ss_pred             CCCEEEEeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC--------------CeEEE
Q 021925          157 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD--------------KSAKL  217 (305)
Q Consensus       157 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~i  217 (305)
                      +++.++.|+.+     ..+.+||+.+.+-...-. ..........+.+  ++++++.|+.+              ..+.+
T Consensus       206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~  282 (318)
T 2woz_A          206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE-FPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWK  282 (318)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC-CSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEE
T ss_pred             CCEEEEEcCcCCCCccceEEEEECCCCeEEECCC-CCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEE
Confidence            45666666643     357789988765433211 1111112222222  56677777754              34777


Q ss_pred             EEcCCceEE
Q 021925          218 WDARTLELI  226 (305)
Q Consensus       218 wd~~~~~~~  226 (305)
                      ||+.+.+-.
T Consensus       283 yd~~~~~W~  291 (318)
T 2woz_A          283 YEDDKKEWA  291 (318)
T ss_dssp             EETTTTEEE
T ss_pred             EeCCCCEeh
Confidence            887765443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.94  E-value=1.3  Score=36.37  Aligned_cols=217  Identities=9%  Similarity=0.068  Sum_probs=137.3

Q ss_pred             CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEE
Q 021925           31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI  110 (305)
Q Consensus        31 dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  110 (305)
                      +..|.|-|+.++..+.+-.-..   -+.-.+|..+.+|--. ..++.|+|+++.+.+..+..+..|.--.|..+..+.++
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~A---dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lV  122 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV  122 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECCC---SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEE
T ss_pred             CCeEEEEECCCCCcceeccccc---ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEE
Confidence            3478888988765443322111   2234678777776654 58899999999999999999999999999988888777


Q ss_pred             eCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC----CCeeEEEEcCCCCEEEEee-------CCCcEEEEeCCCCc
Q 021925          111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ----GRINRAVWGPLNRTIISAG-------EDAIVRIWDTETGK  179 (305)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~  179 (305)
                      +..       .+.-|.+..     ...+...+..|.    ..|..-..+++.++++..+       ..|.+.+|..+.+ 
T Consensus       123 T~t-------aVyHWsi~~-----~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-  189 (494)
T 1bpo_A          123 TDN-------AVYHWSMEG-----ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-  189 (494)
T ss_dssp             CSS-------EEEEEESSS-----SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-
T ss_pred             cCC-------eeEEecccC-----CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-
Confidence            653       455555532     335666666553    4566777888898877443       2478899998754 


Q ss_pred             EeeeeccccCCccceEEEEEcCCC---CEEEEEeC---CCeEEEEEcCCc---e-----EEEEEe-e----CCCeeEEEe
Q 021925          180 LLKESDKETGHKKTITSLAKAADG---SHFLTGSL---DKSAKLWDARTL---E-----LIKTYV-T----ERPVNAVTM  240 (305)
Q Consensus       180 ~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg~i~iwd~~~~---~-----~~~~~~-~----~~~v~~~~~  240 (305)
                      ..+.++   +|......+....+.   ..++.+..   .+++.|-++...   .     ....+. .    ..-..++..
T Consensus       190 ~sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv  266 (494)
T 1bpo_A          190 VSQPIE---GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI  266 (494)
T ss_dssp             CEEEEC---CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred             ccchhe---eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence            334454   676666555443221   23333333   278999988532   1     111111 1    223457788


Q ss_pred             cCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          241 SPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      ++....+..-+..|.     ++++++.....+
T Consensus       267 s~kygviyviTK~G~-----i~lyDleTgt~i  293 (494)
T 1bpo_A          267 SEKHDVVFLITKYGY-----IHLYDLETGTCI  293 (494)
T ss_dssp             ETTTTEEEEEETTSE-----EEEEETTTCCEE
T ss_pred             cccCCEEEEEecCce-----EEEEecccceee
Confidence            888888888788887     455555444444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.94  E-value=1.2  Score=42.44  Aligned_cols=206  Identities=9%  Similarity=0.070  Sum_probs=121.1

Q ss_pred             CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEE
Q 021925           31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI  110 (305)
Q Consensus        31 dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  110 (305)
                      ..+|.|-|+.++..+.+-.   -.--+.-.+|..+.++--. ..++.|+|+++.+.+..+..+.+|.--.|.....+.++
T Consensus        47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lV  122 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV  122 (1630)
T ss_pred             CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEE
Confidence            3478888888765442211   1112334678777666554 68899999999999999999889988888888777776


Q ss_pred             eCCcceeeeeeEEEEEeecccCCCCCceEEEEecc----CCCeeEEEEcCCCCEEEEee-------CCCcEEEEeCCCCc
Q 021925          111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGP----QGRINRAVWGPLNRTIISAG-------EDAIVRIWDTETGK  179 (305)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~  179 (305)
                      +..       .+..|.+..     ...+...+..|    ...|..-..+++.++++..+       ..|.+.+|....+.
T Consensus       123 T~~-------aVyHW~~~~-----~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~  190 (1630)
T 1xi4_A          123 TDN-------AVYHWSMEG-----ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV  190 (1630)
T ss_pred             cCC-------eEEEeccCC-----CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc
Confidence            643       455555532     22333333333    45677777888888877443       35789999886432


Q ss_pred             EeeeeccccCCccceEEEEEc--CC-CCEEEEEeC---CCeEEEEEcCCc---eEE------EEEe----eCCCeeEEEe
Q 021925          180 LLKESDKETGHKKTITSLAKA--AD-GSHFLTGSL---DKSAKLWDARTL---ELI------KTYV----TERPVNAVTM  240 (305)
Q Consensus       180 ~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~---dg~i~iwd~~~~---~~~------~~~~----~~~~v~~~~~  240 (305)
                       .+.+.   +|.+....+...  +. ...++.+..   .+.+.|-++...   .+.      ..+.    ...-..++..
T Consensus       191 -sQ~ie---gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v  266 (1630)
T 1xi4_A          191 -SQPIE---GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI  266 (1630)
T ss_pred             -chhhh---HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe
Confidence             23333   555444333332  11 122222221   267888887432   111      1111    1122346677


Q ss_pred             cCCCCcEEEeeCCcEE
Q 021925          241 SPLLDHVCIGEPQTIK  256 (305)
Q Consensus       241 ~~~~~~l~~~~~~~~~  256 (305)
                      ++....+..-+..|..
T Consensus       267 s~k~g~iy~itk~G~~  282 (1630)
T 1xi4_A          267 SEKHDVVFLITKYGYI  282 (1630)
T ss_pred             ccccCEEEEEecCceE
Confidence            7777777777777763

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.72  E-value=2.8  Score=39.33  Aligned_cols=211  Identities=10%  Similarity=0.044  Sum_probs=107.5

Q ss_pred             CEEEEeeCCCceEEEEcCCCeee--EEecCCCcceEEEEEcCC------CcEEEEEeC-CCcEEEEecCCCCeeEEEeeC
Q 021925           23 DLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWCCDVSRD------SMTLITGSA-DQTAKLWNVETGAQLFTFNFD   93 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~------~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~   93 (305)
                      .+++.++ ++.+.++.+.+++..  ... .-.+.|.|+++.|.      +++++.|.. |++|+|+++.+.+.+.....+
T Consensus       524 ~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~  601 (1158)
T 3ei3_A          524 SQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG  601 (1158)
T ss_dssp             SEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC
Confidence            3555554 567888877765422  222 23568999999863      368899986 999999999987777665543


Q ss_pred             C--CceEEEEec--CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceE---EEEeccCCCeeEEEEcCCCC-EEEEee
Q 021925           94 S--PARSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV---LILKGPQGRINRAVWGPLNR-TIISAG  165 (305)
Q Consensus        94 ~--~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~-~l~~~~  165 (305)
                      .  .+.++.+..  +..++.++..+...+..     .+..    ..+...   ...-+ ..++.-..+...+. .+++.+
T Consensus       602 ~~~~p~si~l~~~~~~~~L~igl~dG~l~~~-----~~d~----~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s  671 (1158)
T 3ei3_A          602 GEIIPRSILMTTFESSHYLLCALGDGALFYF-----GLNI----ETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS  671 (1158)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEETTSEEEEE-----EECT----TTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES
T ss_pred             CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE-----EEcC----CCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC
Confidence            2  455554443  22344444332222111     1110    011111   11112 22333233333333 233333


Q ss_pred             CCCcEEEEeCCCCcEeeeeccccCCccce-EEEEEcCC--CCEEEEEeCCCeEEEEEcCCc--eEEEEEeeCCCeeEEEe
Q 021925          166 EDAIVRIWDTETGKLLKESDKETGHKKTI-TSLAKAAD--GSHFLTGSLDKSAKLWDARTL--ELIKTYVTERPVNAVTM  240 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v-~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~  240 (305)
                       +.-..++--+ ++....-.    ....+ ....|+..  ..-++..+ ++.++|..+.+.  -.++++..+..+..+++
T Consensus       672 -~rp~liy~~~-~~l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y  744 (1158)
T 3ei3_A          672 -DRPTVIYSSN-HKLVFSNV----NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICY  744 (1158)
T ss_dssp             -SSCEEEEESS-SSEEEEEB----SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEE
T ss_pred             -CCCEEEEEcC-CceEEecc----ChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEE
Confidence             3333334322 22221110    11122 22334331  12344433 456888887543  34455667778999999


Q ss_pred             cCCCCcEEEeeC
Q 021925          241 SPLLDHVCIGEP  252 (305)
Q Consensus       241 ~~~~~~l~~~~~  252 (305)
                      +|..+.++++..
T Consensus       745 ~~~~~~~~v~~~  756 (1158)
T 3ei3_A          745 QEVSQCFGVLSS  756 (1158)
T ss_dssp             EGGGTEEEEEEE
T ss_pred             cCCCCEEEEEEE
Confidence            999888776643

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.54  E-value=1.7  Score=36.07  Aligned_cols=106  Identities=11%  Similarity=0.055  Sum_probs=60.7

Q ss_pred             CCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCc---Eeeeecccc------CCccceEEEEEcCC----CCEEEEEeC-
Q 021925          147 GRINRAVWGPLNR-TIISAGEDAIVRIWDTETGK---LLKESDKET------GHKKTITSLAKAAD----GSHFLTGSL-  211 (305)
Q Consensus       147 ~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~------~~~~~v~~~~~~~~----~~~l~~~~~-  211 (305)
                      .....|+|.|++. .|+.+...|.|++++.....   .+..+....      ........|+++|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4567899999995 45566778999999754221   222222111      11456889999996    444444332 


Q ss_pred             -C----------CeEEEEEcCC----------ceEEEEEe---eCCCeeEEEecCCCCcEEEeeC
Q 021925          212 -D----------KSAKLWDART----------LELIKTYV---TERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       212 -d----------g~i~iwd~~~----------~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                       +          ..|.-|.+..          .+.+..+.   ....-..++|.|||.+.++.++
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          1344455432          22333332   1233578999999976555443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.05  E-value=2.2  Score=35.42  Aligned_cols=236  Identities=13%  Similarity=0.083  Sum_probs=117.9

Q ss_pred             ccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCC---eeeEEec---------CCCcceEEEEEcCC----CcEEEEEeC
Q 021925           10 ERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNG---ERLGTYR---------GHNGAVWCCDVSRD----SMTLITGSA   72 (305)
Q Consensus        10 ~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~---~~~~~~~---------~~~~~v~~i~~~~~----~~~l~s~~~   72 (305)
                      -.....|+|.|+|. .|+.+...|.|++++....   +.+..+.         ........|+|+|+    +...++-+.
T Consensus        13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            34567999999996 4555577899999974322   1222221         11456899999996    444343332


Q ss_pred             --C----------CcEEEEecCC----------CCeeEEEe---eCCCceEEEEecCCceEEEeCCccee----------
Q 021925           73 --D----------QTAKLWNVET----------GAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFME----------  117 (305)
Q Consensus        73 --d----------g~v~vwd~~~----------~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~----------  117 (305)
                        +          ..|.-|.+..          .+.+..+.   .......++|.|++.+.+...+....          
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~  172 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGL  172 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCc
Confidence              1          1344455532          12333332   22345689999999888877664321          


Q ss_pred             eeeeEEEEEeecccC-------CC---C------CceEEEEeccCCCeeEEEEcCC-----CC-EEEEeeCCC----cEE
Q 021925          118 LNSAIHVKRIARDPA-------DQ---G------GESVLILKGPQGRINRAVWGPL-----NR-TIISAGEDA----IVR  171 (305)
Q Consensus       118 ~~~~~~~~~~~~~~~-------~~---~------~~~~~~~~~~~~~i~~~~~~~~-----~~-~l~~~~~dg----~i~  171 (305)
                      .....++..+.....       ..   .      ......-.+|. ....++|+|.     |+ ++..+...|    .-.
T Consensus       173 ~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e  251 (463)
T 2wg3_C          173 SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSAR  251 (463)
T ss_dssp             CSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred             CCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence            011223344332221       00   0      01112222333 3457899997     33 344332212    123


Q ss_pred             EEeCCCCc------EeeeeccccCCc--cceEEEEEcCC-------CCEEEEEeCCCeEEEEEcCCceE---EEEE-e--
Q 021925          172 IWDTETGK------LLKESDKETGHK--KTITSLAKAAD-------GSHFLTGSLDKSAKLWDARTLEL---IKTY-V--  230 (305)
Q Consensus       172 iwd~~~~~------~~~~~~~~~~~~--~~v~~~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~---~~~~-~--  230 (305)
                      |..+..+.      ++..+.    +.  ..+..+.|...       +. ++.+...+.|....++....   ...+ .  
T Consensus       252 i~~i~~G~~yG~~~P~~~~~----~~~g~Ap~G~~~Y~G~~fP~~~g~-~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~  326 (463)
T 2wg3_C          252 ILQIIKGKDYESEPSLLEFK----PFSNGPLVGGFVYRGCQSERLYGS-YVFGDRNGNFLTLQQSPVTKQWQEKPLCLGT  326 (463)
T ss_dssp             EEEEC----CCSCCCCEECC----C----CEEEEEECCCSSCTTTTTC-EEEEETTSCEEEEEC-----CCEEEEECEEE
T ss_pred             EeeeccCCCCCCCCCeEEee----CCCCccccceEEEeCCCChhhcce-EEEecCCCcEEEEEeCCCCceeeEEEeecCC
Confidence            33333222      233332    22  46778887543       23 44555557766666543321   1111 0  


Q ss_pred             -------eCCCeeEEEecCCCCcEEEee
Q 021925          231 -------TERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       231 -------~~~~v~~~~~~~~~~~l~~~~  251 (305)
                             ...++.++...|||.++++..
T Consensus       327 ~~~~~~~~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          327 SGSCRGYFSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             TTSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred             cccccccccCcceEEEECCCCCEEEEec
Confidence                   124689999999998877765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.89  E-value=1.8  Score=33.71  Aligned_cols=216  Identities=10%  Similarity=0.021  Sum_probs=94.2

Q ss_pred             EEEEeeCCCceEEEEcCCCeeeE-EecCCCcceEEEEEcCCCcEEEEEeC----CC-------cEEEEecCCCCeeEEEe
Q 021925           24 LLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSA----DQ-------TAKLWNVETGAQLFTFN   91 (305)
Q Consensus        24 ~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~----dg-------~v~vwd~~~~~~~~~~~   91 (305)
                      .++.|+.  .+..||..+++-.. .+..............++..++.|+.    ++       .+.++|..+.+-...-.
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            4445553  48899998877543 12211112222233446777788873    12       16778877664322211


Q ss_pred             eCCC--ceEEEEecCCceEEEeCCc--ceeeeeeEEEEEeecccCCCCCceEEEEec-cCCCe-eEEEEcCCCCEEEEee
Q 021925           92 FDSP--ARSVDFAVGDKLAVITTDP--FMELNSAIHVKRIARDPADQGGESVLILKG-PQGRI-NRAVWGPLNRTIISAG  165 (305)
Q Consensus        92 ~~~~--v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i-~~~~~~~~~~~l~~~~  165 (305)
                      .+.+  -.+++.. ++.+.+.++..  .......+...+....       .-..+.. ..... .+++. .+++.++.|+
T Consensus        96 ~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-------~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG  166 (318)
T 2woz_A           96 LPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAA-------KWSEVKNLPIKVYGHNVIS-HNGMIYCLGG  166 (318)
T ss_dssp             BSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTT-------EEEEECCCSSCEESCEEEE-ETTEEEEECC
T ss_pred             CCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCC-------CEeECCCCCCcccccEEEE-ECCEEEEEcC
Confidence            2221  1223222 45555554421  1112222333322111       0001100 00000 11222 3566666665


Q ss_pred             C------CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCceEEEEEeeCC-
Q 021925          166 E------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLELIKTYVTER-  233 (305)
Q Consensus       166 ~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~-  233 (305)
                      .      -..+.+||+.+.+-...-... ........+.+  ++++++.|+.+     ..+.+||+.+.+-...-.... 
T Consensus       167 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  243 (318)
T 2woz_A          167 KTDDKKCTNRVFIYNPKKGDWKDLAPMK-TPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE  243 (318)
T ss_dssp             EESSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC
T ss_pred             CCCCCCccceEEEEcCCCCEEEECCCCC-CCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc
Confidence            3      245899999876543221111 11111222222  56777777653     357788988764332211111 


Q ss_pred             CeeEEEecCCCCcEEEeeCC
Q 021925          234 PVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       234 ~v~~~~~~~~~~~l~~~~~~  253 (305)
                      .....+..-++++++.|+.+
T Consensus       244 r~~~~~~~~~~~i~v~GG~~  263 (318)
T 2woz_A          244 RSSISLVSLAGSLYAIGGFA  263 (318)
T ss_dssp             CBSCEEEEETTEEEEECCBC
T ss_pred             ccceEEEEECCEEEEECCee
Confidence            11111222355667776654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.36  E-value=2.4  Score=33.56  Aligned_cols=91  Identities=12%  Similarity=0.081  Sum_probs=45.2

Q ss_pred             CCCEEEEeeCC-CceEEEEcCC--Cee--eEEec-CCCcceEEEEEcCCCcEEEEEeC-C---------CcEEEEecCCC
Q 021925           21 DGDLLFSCAKD-HTPTVWFADN--GER--LGTYR-GHNGAVWCCDVSRDSMTLITGSA-D---------QTAKLWNVETG   84 (305)
Q Consensus        21 ~~~~l~s~~~d-g~v~iw~~~~--~~~--~~~~~-~~~~~v~~i~~~~~~~~l~s~~~-d---------g~v~vwd~~~~   84 (305)
                      +++.++.|+.+ ..+.++|..+  .+-  +..+. .....-..+.+  +++.++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            56666776643 4788888864  322  22222 11111122222  5667777765 2         46888898776


Q ss_pred             CeeEEEeeC-C-CceEEEEecCCceEEEeCC
Q 021925           85 AQLFTFNFD-S-PARSVDFAVGDKLAVITTD  113 (305)
Q Consensus        85 ~~~~~~~~~-~-~v~~~~~~~~~~~~~~~~~  113 (305)
                      +-...-... . .....+...++++.+.++.
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~  127 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGV  127 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECC
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCc
Confidence            422211111 1 1222223356666666653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.88  E-value=4.8  Score=35.75  Aligned_cols=227  Identities=10%  Similarity=0.028  Sum_probs=119.9

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   91 (305)
                      .|.++...+++..|..|+. +-+..++..+++...........|.++...++|.+.+ |+.+ -+.+++..+++......
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~  268 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIH  268 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECC
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEc
Confidence            3788888777765555553 4577888776654322111234688888887776554 4444 48888877654432211


Q ss_pred             --------eCCCceEEEEecCCceEEEeCCcceeeeee-EEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           92 --------FDSPARSVDFAVGDKLAVITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        92 --------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                              ....|.++....++.+-+....+ ...... ............        -......|.++.-..+|++. 
T Consensus       269 ~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~i~~D~~g~lW-  338 (758)
T 3ott_A          269 DSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQIT--------GTGDGNQFYSLFRDSKGFYW-  338 (758)
T ss_dssp             CTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHS--------CSCCCCBEEEEEECTTCCEE-
T ss_pred             CCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCC--------CCCCCceEEEEEEcCCCCEE-
Confidence                    12346677666666665555432 111100 000000000000        00112457788877777644 


Q ss_pred             EeeCCCcEEEEeCCCCc--Eeeeeccc----cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe------
Q 021925          163 SAGEDAIVRIWDTETGK--LLKESDKE----TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV------  230 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~--~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------  230 (305)
                      .|+.+| +..++..+++  ....+...    .-....|.++.-.++|++. .|+ ++-+..+|..+++...-..      
T Consensus       339 iGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~~~~~~~~~~~~~  415 (758)
T 3ott_A          339 FGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQFIHYNIVDNTGT  415 (758)
T ss_dssp             EEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTEEEEEEEECCC--
T ss_pred             EeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCcEEEeecCCCcCC
Confidence            445554 6677765432  11112100    0123468888888887644 455 4569999988765433211      


Q ss_pred             -eCCCeeEEEecCCCCcEEEeeC-CcE
Q 021925          231 -TERPVNAVTMSPLLDHVCIGEP-QTI  255 (305)
Q Consensus       231 -~~~~v~~~~~~~~~~~l~~~~~-~~~  255 (305)
                       ....|.++.-.++|++ .+|+. .+.
T Consensus       416 ~~~~~v~~i~~d~~g~l-WigT~~~Gl  441 (758)
T 3ott_A          416 YNTNWTYYIFEDTAGQL-WISTCLGGI  441 (758)
T ss_dssp             CBSSSEEEEEECTTSEE-EEEESSSCE
T ss_pred             CCCceEEEEEEcCCCCE-EEEECCCce
Confidence             1234778877777764 44554 443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.60  E-value=2.9  Score=32.46  Aligned_cols=200  Identities=6%  Similarity=-0.045  Sum_probs=102.0

Q ss_pred             EEcCCCCEEEEeeCC--------------CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe--CC--CcEEE
Q 021925           17 KYNKDGDLLFSCAKD--------------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS--AD--QTAKL   78 (305)
Q Consensus        17 ~~~~~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~d--g~v~v   78 (305)
                      -++++|.+|+-+...              ..|+..++..++. ..+....    +..|+++++.|+-..  .+  ..|..
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEEECSC----EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEeecCC----ccEEEEeCCEEEEEeecCCCCceEEE
Confidence            457888888876543              3566667665543 3333222    226777888887665  33  44555


Q ss_pred             EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      .++...+. ..+.... +  ..++++++.+.....+      ...++.+...    .........   +... ..++|++
T Consensus       134 ~~~dGs~~-~~lt~~~-~--~~~~~~g~~iy~t~~g------~~~Iy~~~l~----g~~~~~l~~---~~~~-~~~~P~g  195 (302)
T 3s25_A          134 IRIDGEEK-KKIKNHY-L--FTCNTSDRYFYYNNPK------NGQLYRYDTA----SQSEALFYD---CNCY-KPVVLDD  195 (302)
T ss_dssp             EETTSCCC-EEEESSC-C--CCSEEETTEEEEECTT------TCCEEEEETT----TTEEEEEEC---SCEE-EEEEEET
T ss_pred             EECCCCCe-EEEeCCC-c--eEeeEECCEEEEEeCC------CceEEEEECC----CCCEEEEeC---CCcc-ceeeecC
Confidence            56654333 3333221 2  3457777777766541      1112222111    111111222   2222 2356889


Q ss_pred             CEEEEeeCC--CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCceEEEEEeeCCC
Q 021925          159 RTIISAGED--AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYVTERP  234 (305)
Q Consensus       159 ~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~  234 (305)
                      ++|+-...+  ..|..-++.... ...+.     ...+  ..++|++..|.-++  ..+.|..-++.... .+.+... .
T Consensus       196 ~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt-----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~~-~  265 (302)
T 3s25_A          196 TNVYYMDVNRDNAIVHVNINNPN-PVVLT-----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG-FKELAKG-E  265 (302)
T ss_dssp             TEEEEEEGGGTTEEEEECSSSCC-CEECS-----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC-CEEEEES-C
T ss_pred             CEEEEEEcCCCcEEEEEECCCCC-eEEEe-----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc-cEEeeCC-c
Confidence            888866543  467777776544 33332     1223  23778888887653  24567777765433 2333222 2


Q ss_pred             eeEEEecCCCCcEEEee
Q 021925          235 VNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       235 v~~~~~~~~~~~l~~~~  251 (305)
                      +.  .+++.+.+|+-..
T Consensus       266 ~~--~i~i~~d~Iy~td  280 (302)
T 3s25_A          266 FC--NINVTSQYVYFTD  280 (302)
T ss_dssp             EE--EEEECSSEEEEEE
T ss_pred             cc--eEEEeCCEEEEEE
Confidence            32  4455566665543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.30  E-value=6.7  Score=36.01  Aligned_cols=38  Identities=16%  Similarity=0.065  Sum_probs=33.3

Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   91 (305)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46777777888899999999999999999999988765

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=91.78  E-value=3.8  Score=31.98  Aligned_cols=101  Identities=11%  Similarity=0.030  Sum_probs=61.0

Q ss_pred             CCCEEEEeeCCCcEEEEeCCC-------CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-----
Q 021925          157 LNRTIISAGEDAIVRIWDTET-------GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-----  224 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----  224 (305)
                      +..+++..+..|.++...+..       +.....+.   . ...+..+....++..++..+.+|.+..+....-.     
T Consensus       113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~---~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~  188 (312)
T 1suu_A          113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN---D-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRG  188 (312)
T ss_dssp             TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC---T-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred             CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC---C-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCC
Confidence            456788899999999888743       22222222   2 4455555554555678889999999999875421     


Q ss_pred             --EEEE--EeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEe
Q 021925          225 --LIKT--YVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLV  261 (305)
Q Consensus       225 --~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~  261 (305)
                        -+..  +..+..|.++..-+++..+++.+..+......+
T Consensus       189 ~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~  229 (312)
T 1suu_A          189 TQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM  229 (312)
T ss_dssp             BCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred             CCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence              1122  223455666655555566667777776444443

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=90.67  E-value=8.5  Score=34.01  Aligned_cols=225  Identities=8%  Similarity=-0.015  Sum_probs=109.0

Q ss_pred             eEEEE-EcCCCCEEEEee----CC-CceEEEEcCCCeeeE-Eec-CCCc------ceEEEEEcCCCcEEEEE--------
Q 021925           13 LTYLK-YNKDGDLLFSCA----KD-HTPTVWFADNGERLG-TYR-GHNG------AVWCCDVSRDSMTLITG--------   70 (305)
Q Consensus        13 v~~~~-~~~~~~~l~s~~----~d-g~v~iw~~~~~~~~~-~~~-~~~~------~v~~i~~~~~~~~l~s~--------   70 (305)
                      ...+. ++|++++++.+-    +| ..++++|+.+++.+. .+. .-+.      ....++|..+...+++.        
T Consensus       131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred             EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence            34455 889998877642    22 378999999998763 122 0001      11344777444444432        


Q ss_pred             --eCCCcEEEEecCCCC--eeEEEeeCC-C-ceEEEEecCCce----EEEeCC-cceeeeeeEEEEEeecccCCCCCceE
Q 021925           71 --SADQTAKLWNVETGA--QLFTFNFDS-P-ARSVDFAVGDKL----AVITTD-PFMELNSAIHVKRIARDPADQGGESV  139 (305)
Q Consensus        71 --~~dg~v~vwd~~~~~--~~~~~~~~~-~-v~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (305)
                        +...+|+.|.+-+..  -...+..+. . -.....++++..    +++... ..  ......+.+..    ...+ ..
T Consensus       211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~----~~~~-~~  283 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDF--YNYDNYILDTK----YKNL-KL  283 (711)
T ss_dssp             TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSS--SCEEEEEEECS----SSSC-EE
T ss_pred             cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEeccc--CceeEEEEcCC----CCCC-cc
Confidence              112568888776553  222333221 1 223334455542    233211 11  11111111110    0011 11


Q ss_pred             EEEeccCCCeeEEEEcCCCCEEEEe----------eCCCcEEEEeCCCCc-------Eeee-eccccCCccceEEEEEcC
Q 021925          140 LILKGPQGRINRAVWGPLNRTIISA----------GEDAIVRIWDTETGK-------LLKE-SDKETGHKKTITSLAKAA  201 (305)
Q Consensus       140 ~~~~~~~~~i~~~~~~~~~~~l~~~----------~~dg~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~~~~~~  201 (305)
                      ..+.....  ..+..+.++.+++..          ...+.|...|+.+..       ..+. +.  ......+..+.+..
T Consensus       284 ~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~  359 (711)
T 4hvt_A          284 QKINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT--PTANEVFNFISTTK  359 (711)
T ss_dssp             EECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC--CCTTEEEEEEEECS
T ss_pred             eEeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC--CCCCCeEEEEEEEC
Confidence            22221111  112334455444422          246789999987632       1122 22  12345678888887


Q ss_pred             CCCEEEEEeCCCe--EEEEEcCCce-EEEE-Ee--eCCCeeEEEecCCCCcEEE
Q 021925          202 DGSHFLTGSLDKS--AKLWDARTLE-LIKT-YV--TERPVNAVTMSPLLDHVCI  249 (305)
Q Consensus       202 ~~~~l~~~~~dg~--i~iwd~~~~~-~~~~-~~--~~~~v~~~~~~~~~~~l~~  249 (305)
                      + .++++...++.  +.++|+.+++ .... +.  ....+.....++++..++.
T Consensus       360 ~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~  412 (711)
T 4hvt_A          360 D-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALI  412 (711)
T ss_dssp             S-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEE
T ss_pred             C-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEE
Confidence            6 56777777775  6777776664 2333 33  2345666677777765443

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=89.85  E-value=6.1  Score=31.06  Aligned_cols=105  Identities=7%  Similarity=-0.032  Sum_probs=65.5

Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCcEe-----eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC--Cc------
Q 021925          157 LNRTIISAGEDAIVRIWDTETGKLL-----KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR--TL------  223 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~------  223 (305)
                      +..+++..+.+|.++.-.+..-...     ..+. . .....+..+........|+..+..|.+..+...  .-      
T Consensus       108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~-l-ke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~  185 (327)
T 3uc1_A          108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVN-L-RDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA  185 (327)
T ss_dssp             SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCB-C-CTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT
T ss_pred             CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEE-E-CCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC
Confidence            4679999999999999887542211     1111 1 123445555555555678888899998888766  21      


Q ss_pred             ---eEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925          224 ---ELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL  263 (305)
Q Consensus       224 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (305)
                         ...-.+..+..|.++...+.+..+++.+..|......+..
T Consensus       186 a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e  228 (327)
T 3uc1_A          186 TSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE  228 (327)
T ss_dssp             SBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             CCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence               2212233455677776666667888888888755554443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.97  E-value=4.4  Score=37.21  Aligned_cols=39  Identities=26%  Similarity=0.176  Sum_probs=33.9

Q ss_pred             cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      ..+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            356777778888899999999999999999999988765

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=88.71  E-value=8.1  Score=30.97  Aligned_cols=157  Identities=12%  Similarity=0.033  Sum_probs=78.6

Q ss_pred             EcCCCcEEEEEeCCCcEEEEecCC---------CCeeEEEeeCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeec
Q 021925           60 VSRDSMTLITGSADQTAKLWNVET---------GAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIAR  129 (305)
Q Consensus        60 ~~~~~~~l~s~~~dg~v~vwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  129 (305)
                      +-|+...+++.+.+|.|+--.+.+         +..-..++....+..+....... +++....+......   .+++..
T Consensus         3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~---~~eip~   79 (370)
T 3l6v_A            3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP---VHQLPE   79 (370)
T ss_dssp             CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEE---GGGSCB
T ss_pred             cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEE---HHHCcC
Confidence            346777888999999998765421         12222333445555555444444 33333322211111   111111


Q ss_pred             ccCCCCCceEE---EEeccCCCeeEEEEcC---CCCEEEEeeCCCcEEEEeCCCCc-----EeeeeccccCCccceEEEE
Q 021925          130 DPADQGGESVL---ILKGPQGRINRAVWGP---LNRTIISAGEDAIVRIWDTETGK-----LLKESDKETGHKKTITSLA  198 (305)
Q Consensus       130 ~~~~~~~~~~~---~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~  198 (305)
                      ......+.++.   .+. ....|.++..-+   .+.+|+.++..|.++...+..-.     -+..+.. .. ...+-.+.
T Consensus        80 ~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L-~~-~d~lv~v~  156 (370)
T 3l6v_A           80 AGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINL-DE-GDALVGVA  156 (370)
T ss_dssp             CCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCC-CT-TCCEEEEE
T ss_pred             CCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEe-CC-CCEEEEEE
Confidence            11111222111   112 233454444332   35689999999999998864321     1112211 12 34444444


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          199 KAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       199 ~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      ...+...++..+.+|.+..++...
T Consensus       157 ~~~~~~~i~l~T~~G~~irf~~~~  180 (370)
T 3l6v_A          157 LTDGDRDVLLFASNGKTVRFGEST  180 (370)
T ss_dssp             EECSCCEEEEEETTSEEEEEEGGG
T ss_pred             EeCCCceEEEEeCCCeEEEEEccc
Confidence            444555788888899888887643

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=88.62  E-value=7.5  Score=30.48  Aligned_cols=101  Identities=8%  Similarity=0.052  Sum_probs=58.3

Q ss_pred             CCEEEEeeCCCcEEEEeCCCC------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-------
Q 021925          158 NRTIISAGEDAIVRIWDTETG------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-------  224 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------  224 (305)
                      +.+++.++.+|.++...+..-      +-+..+...  ....+-.+........++..+.+|.+..+....-.       
T Consensus       106 ~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~--e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~  183 (323)
T 1wp5_A          106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK--NDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAA  183 (323)
T ss_dssp             SCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC--TTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCC
T ss_pred             CceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeC--CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCc
Confidence            568999999999999887421      112222211  22445455444455678888899998888765321       


Q ss_pred             EEEE--EeeCCCeeEEEecCCCC-cEEEeeCCcEEEEEE
Q 021925          225 LIKT--YVTERPVNAVTMSPLLD-HVCIGEPQTIKFMLL  260 (305)
Q Consensus       225 ~~~~--~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~  260 (305)
                      -+..  +..+..|.++..-+++. .+++.+..+......
T Consensus       184 GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~  222 (323)
T 1wp5_A          184 GVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMK  222 (323)
T ss_dssp             CEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEE
Confidence            1222  22344566665444444 566667666643333

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=88.09  E-value=7.4  Score=29.77  Aligned_cols=68  Identities=10%  Similarity=0.146  Sum_probs=34.9

Q ss_pred             CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 021925          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  223 (305)
                      ..|..++...+.. ++.  .||.|+.|-......+..-.   .....|..++-.... .++..  ||+++.|-....
T Consensus       180 ~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~---~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          180 SGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPT---EALSGVSAIASGEWY-SLALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             SSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCG---GGGSSCCEEEECSSC-EEEEE--TTEEEEESTTCC
T ss_pred             CCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCc---ccCCCceEEEcCCCE-EEEEE--CCEEEEecCCCC
Confidence            3455665543322 223  58888888765432221111   122346666654332 33333  888998876543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=88.05  E-value=7.4  Score=29.75  Aligned_cols=182  Identities=10%  Similarity=0.010  Sum_probs=82.4

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE-EE
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF-TF   90 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~   90 (305)
                      .|..++....  +.+.-. ||.|+.|-......+..-......|..++...+. .++. . ||.|..|-......+- -.
T Consensus        25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            5667766543  223235 8999999754322211111122357777665433 3333 4 8999999654321110 00


Q ss_pred             eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcE
Q 021925           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (305)
Q Consensus        91 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  170 (305)
                      .....+..++.......++.  ++      .+..|-......  .+.    .......|..++...+.  .+.-. ||.|
T Consensus        99 ~~~~~v~~ia~G~~hs~al~--~G------~v~~wG~n~~gq--lg~----~~~~~~~i~~i~~G~~~--~~~l~-~G~v  161 (282)
T 3qhy_B           99 EARSGVDAIAAGAWASYALK--DG------KVIAWGDDSDGQ--TTV----PAEAQSGVTALDGGVYT--ALAVK-NGGV  161 (282)
T ss_dssp             GGSSSEEEEEEETTEEEEEE--TT------EEEEEECCTTST--TSC----CGGGGSSEEEEEECSSE--EEEEE-TTEE
T ss_pred             ccCCCeEEEECcCCEEEEEe--CC------eEEEecCCCCCc--CCC----CccCCCCeEEEEcccCE--EEEEE-CCEE
Confidence            01223333333222222222  11      111111111000  000    01123346666554332  22233 7999


Q ss_pred             EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (305)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  222 (305)
                      +.|-......+..-.   .....|..++-..+. .++.  .||.|+.|-...
T Consensus       162 ~~wG~n~~gqlg~p~---~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~  207 (282)
T 3qhy_B          162 IAWGDNYFGQTTVPA---EAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNR  207 (282)
T ss_dssp             EEEECCTTSTTSCCG---GGGSSEEEEEECSSE-EEEE--ETTEEEEEECCT
T ss_pred             EEecCCCCCCCCCce---ecCCCeEEEEecCCE-EEEE--ECCeEEEEECCC
Confidence            999765432221111   123567777665442 3444  599999997654

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=87.14  E-value=9.4  Score=29.97  Aligned_cols=160  Identities=12%  Similarity=0.079  Sum_probs=82.7

Q ss_pred             cceEEE-EEcC--CCCEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925           11 RPLTYL-KYNK--DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus        11 ~~v~~~-~~~~--~~~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      +.|.++ ...+  +..+++.++.+|.++.-.+.+.       .....++. .+.+..+........|+..+..|.+..+.
T Consensus        95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~  173 (327)
T 3uc1_A           95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS  173 (327)
T ss_dssp             CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred             CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence            445554 3432  5679999999999999876542       22223443 34555555555556777788889988887


Q ss_pred             cC--CCCe-------e--EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC-C--CCceEEEEeccC
Q 021925           81 VE--TGAQ-------L--FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-Q--GGESVLILKGPQ  146 (305)
Q Consensus        81 ~~--~~~~-------~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~  146 (305)
                      ..  .-..       +  ..+.....+..+...+.+..++..+..     +.+....+...... .  .+.....+....
T Consensus       174 ~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~-----G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~  248 (327)
T 3uc1_A          174 ATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSG-----GYAKRTAIEEYPVQGRGGKGVLTVMYDRRR  248 (327)
T ss_dssp             CCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETT-----SEEEEEEGGGSCBCCTTSCCEESSCCCTTT
T ss_pred             CcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCC-----CcEEEEEHHHccccCcCCCcEEEEEecCCC
Confidence            65  2111       1  112234455565555544444444332     22222222221111 1  111111222223


Q ss_pred             CCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 021925          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTE  176 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  176 (305)
                      +.+-.+....+...++..+.+|.+.-++..
T Consensus       249 d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          249 GRLVGALIVDDDSELYAVTSGGGVIRTAAR  278 (327)
T ss_dssp             CSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred             CeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence            344444444445567777778887777764

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=87.07  E-value=9.1  Score=29.72  Aligned_cols=109  Identities=6%  Similarity=-0.066  Sum_probs=62.4

Q ss_pred             CeeEEEEc---CCCCEEEEeeCCCcEEEEeCCCCc-----EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925          148 RINRAVWG---PLNRTIISAGEDAIVRIWDTETGK-----LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (305)
Q Consensus       148 ~i~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  219 (305)
                      .|..+..-   +++.+++..+.+|.++.-.+..-.     -+..+.. ... ..+..+....+...++..+.+|.+..++
T Consensus        96 ~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l-~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~  173 (307)
T 1zi0_A           96 RITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL-VDG-DELIGVDLTSGEDEVMLFSAEGKVVRFK  173 (307)
T ss_dssp             CEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCC-CTT-CCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred             EEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEE-CCC-CEEEEEEEeCCCCEEEEECCCCcEEEEE
Confidence            45444332   345678999999999998764211     1111211 122 4454544444555788888899988887


Q ss_pred             cCCceE-------EE--EEeeCCCeeEEEecCCCCcEEEeeCCcEEEE
Q 021925          220 ARTLEL-------IK--TYVTERPVNAVTMSPLLDHVCIGEPQTIKFM  258 (305)
Q Consensus       220 ~~~~~~-------~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~  258 (305)
                      ...-..       +.  .+..+..|.++...+++..+++.+..+....
T Consensus       174 ~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr  221 (307)
T 1zi0_A          174 ESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKR  221 (307)
T ss_dssp             GGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEE
T ss_pred             HHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEE
Confidence            653211       11  2224455666665555566777777776433

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=86.20  E-value=9.5  Score=29.08  Aligned_cols=202  Identities=11%  Similarity=0.035  Sum_probs=99.4

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEE---EEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCC--
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTV---WFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGA--   85 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~i---w~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~--   85 (305)
                      .+..+.-......|+.-+.+|.++-   +++..+.....+. ..+.|..+.-.. +...++.++.+|.++-..+..-.  
T Consensus        25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~  103 (276)
T 3no0_A           25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK  103 (276)
T ss_dssp             CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred             eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence            4555554444555666677776654   3333332111133 345666664421 46789999999999999865432  


Q ss_pred             --ee--EEEeeCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925           86 --QL--FTFNFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (305)
Q Consensus        86 --~~--~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (305)
                        -.  ..+.....+..+...... .+++.+..+.......   .++........+.....+.. ...|..+...+++..
T Consensus       104 ~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~---~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~  179 (276)
T 3no0_A          104 AQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSV---REVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY  179 (276)
T ss_dssp             STTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEG---GGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred             cCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEh---hhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence              11  112233444444444333 3333333322111110   01111111111222222222 345666555566778


Q ss_pred             EEEeeCCCcEEEEeCCCC-------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE--EEcCC
Q 021925          161 IISAGEDAIVRIWDTETG-------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL--WDART  222 (305)
Q Consensus       161 l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i--wd~~~  222 (305)
                      ++..+..|.++...+..-       +-+..+.    ....+..+....+...++..+.+|.+..  ++...
T Consensus       180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~----~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~  246 (276)
T 3no0_A          180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVSG----TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD  246 (276)
T ss_dssp             EEEEETTSCEEEEEGGGSCCCCTTCCCEECCC----SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred             EEEEeCCCcEEEeEHHHcccCCCCCcceEEEc----CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence            999999999998886432       1222221    2233444333333345666677777776  76553

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=85.64  E-value=18  Score=31.82  Aligned_cols=158  Identities=9%  Similarity=0.003  Sum_probs=77.8

Q ss_pred             CCCcEEEEEeCC----CcEEEEecCCCCeeEEE-e-----eC--CCceEEEEec-CCceEEEeCCccee-eeeeEEEEEe
Q 021925           62 RDSMTLITGSAD----QTAKLWNVETGAQLFTF-N-----FD--SPARSVDFAV-GDKLAVITTDPFME-LNSAIHVKRI  127 (305)
Q Consensus        62 ~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~-~-----~~--~~v~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~  127 (305)
                      .++..++.||.+    ..+.+||..+++-...- .     .+  ..-.+++..+ ++.+++.++..... ....+..++.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            356677777753    46888998877543322 1     11  1223444443 66666665532211 2223333333


Q ss_pred             ecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC--cEEEEeCCCCcEeeeecc--ccCCccceEEEEEcCC-
Q 021925          128 ARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA--IVRIWDTETGKLLKESDK--ETGHKKTITSLAKAAD-  202 (305)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-  202 (305)
                      ....-    ..+..+.. ...-.+++...+++.++.|+.++  .+.+||..+.+-...-..  .........++.+..+ 
T Consensus       476 ~t~~W----~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          476 KTREW----SMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             TTTEE----EECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             CCCcE----EECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence            21100    00000000 11112233324778888887654  799999987654332210  0011122233455554 


Q ss_pred             CCEEEEEeC--C-----CeEEEEEcCCce
Q 021925          203 GSHFLTGSL--D-----KSAKLWDARTLE  224 (305)
Q Consensus       203 ~~~l~~~~~--d-----g~i~iwd~~~~~  224 (305)
                      +++++.|+.  +     ..+.+||+.+.+
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            667777776  2     458999988776

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=84.88  E-value=14  Score=29.76  Aligned_cols=205  Identities=8%  Similarity=0.002  Sum_probs=112.8

Q ss_pred             cceEEEEEcCCCCEEEE--eeC-------------CCceEEEEcCCC--eeeEEecC------CCcceEEEEEc---CC-
Q 021925           11 RPLTYLKYNKDGDLLFS--CAK-------------DHTPTVWFADNG--ERLGTYRG------HNGAVWCCDVS---RD-   63 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s--~~~-------------dg~v~iw~~~~~--~~~~~~~~------~~~~v~~i~~~---~~-   63 (305)
                      -.|..+...+++++-+.  |-.             --.|.+||+.++  +.++++.-      ....+..+.+.   |+ 
T Consensus        87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~  166 (381)
T 3q6k_A           87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG  166 (381)
T ss_dssp             SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred             EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence            35777777777764332  211             125778999999  88887752      23467888887   22 


Q ss_pred             ---CcEEEEEe-CCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceE
Q 021925           64 ---SMTLITGS-ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV  139 (305)
Q Consensus        64 ---~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (305)
                         +.++..+. ..+-|.|+|+.+++.-.... ..      +.|+....+...+                       +..
T Consensus       167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~-~~------~~pd~~~~~~i~G-----------------------~~~  216 (381)
T 3q6k_A          167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTH-PT------FKAERPTKFDYGG-----------------------KEY  216 (381)
T ss_dssp             TSCSEEEEEEETTTTEEEEEETTTTEEEEEEC-GG------GSCCSCEEEEETT-----------------------EEE
T ss_pred             CCCccEEEEEcCCCCcEEEEECCCCcEEEEcc-CC------CccccCcceEECC-----------------------EEe
Confidence               33444433 46779999999887665442 11      1222111111110                       000


Q ss_pred             EEEeccCCCeeEEEEcCC----CCEEEEeeCCCcEEEEeCC-----CCc---EeeeeccccCCccceEEEEEc-CCCCEE
Q 021925          140 LILKGPQGRINRAVWGPL----NRTIISAGEDAIVRIWDTE-----TGK---LLKESDKETGHKKTITSLAKA-ADGSHF  206 (305)
Q Consensus       140 ~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~iwd~~-----~~~---~~~~~~~~~~~~~~v~~~~~~-~~~~~l  206 (305)
                      .    -...+..++.+|+    ++.|.-....+. ++|.+.     ...   .++.+-. .+....-..++.+ .+|.++
T Consensus       217 ~----~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly  290 (381)
T 3q6k_A          217 E----FKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIF  290 (381)
T ss_dssp             E----ECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEE
T ss_pred             E----eccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEE
Confidence            0    1245788889987    677776655442 333332     221   1222210 1112334456775 678777


Q ss_pred             EEEeCCCeEEEEEcCC-c---eEEEEEeeCC---CeeEEEecCCCCcEEEee
Q 021925          207 LTGSLDKSAKLWDART-L---ELIKTYVTER---PVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       207 ~~~~~dg~i~iwd~~~-~---~~~~~~~~~~---~v~~~~~~~~~~~l~~~~  251 (305)
                      ++--..+.|..|+..+ .   +....+....   .+..+++.++|.+.+.++
T Consensus       291 ~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          291 FAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             EEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred             EEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence            7777889999999875 1   2233333222   356777777776555543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.09  E-value=4.3  Score=38.12  Aligned_cols=38  Identities=26%  Similarity=0.174  Sum_probs=31.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            34455566788899999999999999999999998865

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.91  E-value=5.6  Score=37.37  Aligned_cols=38  Identities=16%  Similarity=0.065  Sum_probs=31.8

Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   91 (305)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            34455566777899999999999999999999988876

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=83.18  E-value=5.6  Score=34.16  Aligned_cols=58  Identities=19%  Similarity=0.196  Sum_probs=41.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCC------------CeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEe
Q 021925          193 TITSLAKAADGSHFLTGSLD------------KSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       193 ~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~  250 (305)
                      ..-.|+|+|.|+++++-..+            ..+.+.+..+++....+.  ..+.++.++|+||++.|++.
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            45678999999866654322            246666777776655444  56789999999999998876

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=82.10  E-value=8.7  Score=32.77  Aligned_cols=59  Identities=17%  Similarity=0.183  Sum_probs=43.1

Q ss_pred             cceEEEEEcCCCCEEEEEeC------------CCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEe
Q 021925          192 KTITSLAKAADGSHFLTGSL------------DKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIG  250 (305)
Q Consensus       192 ~~v~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~  250 (305)
                      .....|.|+++|.+.++...            ...|..++..+++....+.  ....++.++|+||++.|.++
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence            45678999999987663221            2257777877787655554  34678999999999998887

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=81.52  E-value=12  Score=32.99  Aligned_cols=37  Identities=14%  Similarity=0.302  Sum_probs=30.4

Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEee
Q 021925           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (305)
Q Consensus        54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~   92 (305)
                      .|.++.+  +..++++-+.|+++|+|++++++++.....
T Consensus       223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            4555554  467999999999999999999998888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-28
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-19
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-16
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-10
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 4e-28
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
                M GH+  ++ +    +GD + S ++D T  +W    G  + T+ GH   V     
Sbjct: 92  ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 151

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELN 119
           ++D   + + S DQT ++W V T                + +A     + I+     E  
Sbjct: 152 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 211

Query: 120 SAIHVKRIARDPADQG---------GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
            +          +            G  ++ L G    +   ++    + I+S  +D  +
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 271

Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
           R+WD +  + +K       H+  +TSL       + +TGS+D++ K+W+
Sbjct: 272 RVWDYKNKRCMKTL---NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.5 bits (202), Expect = 1e-18
 Identities = 51/263 (19%), Positives = 87/263 (33%), Gaps = 28/263 (10%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH  P+T + ++    ++ S ++D T  VW  + G+   T +GH  +V          
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            L + SAD T KLW+ +    + T +      S    + +   +++              
Sbjct: 73  LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR----------D 122

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE-- 183
           +  +    Q G  V    G +  +           I S   D  VR+W   T +   E  
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 184 ---------------SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
                          S           +      G   L+GS DK+ K+WD  T   + T
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242

Query: 229 YVT-ERPVNAVTMSPLLDHVCIG 250
            V  +  V  V        +   
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSC 265

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.5 bits (184), Expect = 3e-16
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 13/183 (7%)

Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK 106
              GH   V           +++ S D T K+W+ ETG    T    +          D 
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT----------DS 61

Query: 107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166
           +  I+ D   +L ++       +    QG E +  + G    ++     P    I+SA  
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226
           D  +++W+ +TG  +      TGH++ +  +    DG+   + S D++ ++W   T E  
Sbjct: 122 DKTIKMWEVQTGYCV---KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

Query: 227 KTY 229
              
Sbjct: 179 AEL 181

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.1 bits (227), Expect = 5e-22
 Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 15/194 (7%)

Query: 28  CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87
            + D T  +W  + G++  T+ GH G V    ++ D+   ++G+ D +AKLW+V  G   
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219

Query: 88  FTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145
            TF   +S   ++ F   G+  A  + D    L      + +     D            
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN----------I 269

Query: 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH 205
              I    +    R +++  +D    +WD              GH   ++ L    DG  
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL---AGHDNRVSCLGVTDDGMA 326

Query: 206 FLTGSLDKSAKLWD 219
             TGS D   K+W+
Sbjct: 327 VATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.9 bits (211), Expect = 8e-20
 Identities = 37/281 (13%), Positives = 79/281 (28%), Gaps = 37/281 (13%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           ++GH   +  + +  D  LL S ++D    +W +    ++      +  V  C  +    
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            +  G  D    ++N++T       + +    +   +    L            +     
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170

Query: 126 RIARDPADQG-----------------------------------GESVLILKGPQGRIN 150
                                                        G       G +  IN
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230

Query: 151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS 210
              + P      +  +DA  R++D    +    +         ITS++ +  G   L G 
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 211 LDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVCIG 250
            D +  +WDA   +        +  V+ + ++     V  G
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.1 bits (188), Expect = 1e-16
 Identities = 25/80 (31%), Positives = 36/80 (45%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           +           +T + ++K G LL +   D    VW A   +R G   GH+  V C  V
Sbjct: 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320

Query: 61  SRDSMTLITGSADQTAKLWN 80
           + D M + TGS D   K+WN
Sbjct: 321 TDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.3 bits (173), Expect = 1e-14
 Identities = 39/242 (16%), Positives = 70/242 (28%), Gaps = 41/242 (16%)

Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGD 105
           T RGH   ++      DS  L++ S D    +W+  T  ++      S    +  +A   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 106 KLAVITTDPFMELNSAI----------------------------------HVKRIARDP 131
                     +     +                                           
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 132 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK 191
             + G+      G  G +      P  R  +S   DA  ++WD   G   +     TGH+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF---TGHE 226

Query: 192 KTITSLAKAADGSHFLTGSLDKSAKL---WDARTLELIKTYVTERPVNAVTMSPLLDHVC 248
             I ++    +G+ F TGS D + +L      + L           + +V+ S     + 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286

Query: 249 IG 250
            G
Sbjct: 287 AG 288

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.5 bits (207), Expect = 4e-19
 Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 18/233 (7%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           ++GHE+ +  L Y   GD L S + D T  +W    G+   T    +G         D  
Sbjct: 159 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 218

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNF--------DSPARSVDFAV-GDKLAVITTDPFM 116
            +  GS D+  ++W+ ETG  +   +              SV F   G  +   + D  +
Sbjct: 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 278

Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
           +L +  +    +       G   +   G +  +        +  I+S  +D  V  WD +
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 177 TGKLLKESDKETGHKKTITSLAKA------ADGSHFLTGSLDKSAKLWDARTL 223
           +G  L       GH+ ++ S+A A       + + F TGS D  A++W  + +
Sbjct: 339 SGNPLLML---QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (170), Expect = 3e-14
 Identities = 44/248 (17%), Positives = 100/248 (40%), Gaps = 17/248 (6%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
              +  +  + ++ DG  L + A+D    +W  +N + +   +GH   ++  D       
Sbjct: 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177

Query: 67  LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF--AVGDKLAVITTDPFMELNSAIHV 124
           L++GS D+T ++W++ TG    T + +    +V      G  +A  + D  + +  +   
Sbjct: 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237

Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
             + R  ++          G +  +   V+    ++++S   D  V++W+ +      +S
Sbjct: 238 FLVERLDSE-----NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292

Query: 185 D---------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERP 234
                        GHK  + S+A   +  + L+GS D+    WD ++   +         
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 352

Query: 235 VNAVTMSP 242
           V +V ++ 
Sbjct: 353 VISVAVAN 360

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 7e-14
 Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 33/246 (13%)

Query: 8   GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG----------------- 50
            H   +  +K++ DG+ L +   + T  V+   +G  +                      
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 51  -HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109
             +  +     S D   L TG+ D+  ++W++E    +                     +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169
           ++      +          R    + G+  L L    G    AV     + I +   D  
Sbjct: 179 VSGSGDRTV----------RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228

Query: 170 VRIWDTETGKLLKESDKE----TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225
           VR+WD+ETG L++  D E    TGHK ++ S+    DG   ++GSLD+S KLW+ +    
Sbjct: 229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288

Query: 226 IKTYVT 231
                T
Sbjct: 289 KSDSKT 294

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 8e-08
 Identities = 58/265 (21%), Positives = 98/265 (36%), Gaps = 27/265 (10%)

Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVS 61
           H +P+     + D   +    K  T   +   N          L     H   V C   S
Sbjct: 12  HSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS 71

Query: 62  RDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA------RSVDFAVGDKLAV--ITTD 113
            D   L TG  ++T +++ V  G+ +   + DS A       +   +    L +  +   
Sbjct: 72  NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130

Query: 114 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
           P  +  +     R+ R    +  + V+IL+G +  I    + P    ++S   D  VRIW
Sbjct: 131 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190

Query: 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
           D  TG+       E G      S     DG +   GSLD++ ++WD+ T  L++   +E 
Sbjct: 191 DLRTGQCSLTLSIEDGVTTVAVS---PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN 247

Query: 234 --------PVNAVTMSPLLDHVCIG 250
                    V +V  +     V  G
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQSVVSG 272

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 76.4 bits (186), Expect = 2e-16
 Identities = 27/235 (11%), Positives = 60/235 (25%), Gaps = 19/235 (8%)

Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI 68
            +                         V+  +  +        N   +      DS  L 
Sbjct: 136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLY 194

Query: 69  TGSADQTAKLWNVETG-------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121
             S        +           ++ F       + +    V   +     +  +     
Sbjct: 195 YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN---D 251

Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 181
           ++ +    +        ++ L+      +  V G        A E  ++  +D +T K+ 
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV- 310

Query: 182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT-YVTERPV 235
                 T  K  +T L  +AD    +    D     +     E  +T    +RP+
Sbjct: 311 ------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.9 bits (130), Expect = 4e-09
 Identities = 7/87 (8%), Positives = 20/87 (22%), Gaps = 4/87 (4%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
           +      +   + +         +      +     +           +    +S D  T
Sbjct: 273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKT 328

Query: 67  LITGSADQTAKLWNVETGAQLFTFNFD 93
           ++    D     + +E      T   D
Sbjct: 329 VMVRKDDGKIYTFPLEKPEDERTVETD 355

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.9 bits (112), Expect = 7e-07
 Identities = 23/221 (10%), Positives = 52/221 (23%), Gaps = 6/221 (2%)

Query: 3   PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD-NGERLGTYRGHNGAVWCCDVS 61
            +L       + Y++   D  + F         +   D    +   +  + G V+   V 
Sbjct: 35  YVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVD 94

Query: 62  RDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121
           R+    +  +        ++ETG             + DF + D    I     ++    
Sbjct: 95  RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT-DFTISDNSRFIAYGFPLKHGET 153

Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 181
                 A    D  G  +              +   ++ +      ++    D       
Sbjct: 154 DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS 213

Query: 182 KESDKE----TGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
            E   +         +               G  D +    
Sbjct: 214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK 254

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 22/207 (10%), Positives = 44/207 (21%), Gaps = 10/207 (4%)

Query: 20  KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD--QTAK 77
            DGDL+   ++     +        L         +       D+               
Sbjct: 13  LDGDLIAFVSRGQA-FIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLG 69

Query: 78  LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 137
           +++  TG             ++     +    +  +   E+ +                 
Sbjct: 70  IYDYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREA 128

Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
            +            A   PL            + ++D E  K        T       + 
Sbjct: 129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAATTENSHDYAP 184

Query: 198 AKAADGSHFLTGSLDKSAKLWDARTLE 224
           A  AD  +    S        D   L 
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLN 211

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (176), Expect = 3e-15
 Identities = 35/201 (17%), Positives = 73/201 (36%), Gaps = 19/201 (9%)

Query: 25  LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84
           + S A D    VW  +    L T +GH   V+      D + +++GS D + ++W+VETG
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETG 207

Query: 85  AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144
             + T        S      + L     D  +++      + +         +S      
Sbjct: 208 NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS------ 261

Query: 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE--SDKETGHKKTITSLAKAAD 202
                           +I++ +D  V++WD +TG+ ++   + +  G    +  +  +  
Sbjct: 262 -----AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316

Query: 203 GSHFLTGSLDKSA----KLWD 219
                 GS + +      + D
Sbjct: 317 KLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 1e-14
 Identities = 48/241 (19%), Positives = 84/241 (34%), Gaps = 23/241 (9%)

Query: 3   PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR 62
           P ++KGH+  +        G+ + S + D+T  VW A  G+ L T  GH G VW   +  
Sbjct: 9   PKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

Query: 63  DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI 122
           + +   +                     +  +              V       +   + 
Sbjct: 68  NIIISGSTDRTLKVWNAETGECIHTLYGHTST--------------VRCMHLHEKRVVSG 113

Query: 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
                 R    + G+ + +L G    +         R ++S   D +V++WD ET   L 
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLH 171

Query: 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMS 241
                T    T    +   DG H ++GSLD S ++WD  T   I T    +   + + + 
Sbjct: 172 -----TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226

Query: 242 P 242
            
Sbjct: 227 D 227

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 4e-11
 Identities = 60/271 (22%), Positives = 98/271 (36%), Gaps = 25/271 (9%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
               +   +    T    +     + S ++D T  VW  + G+ L    GH  AV C   
Sbjct: 86  TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ- 144

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             D   +++G+ D   K+W+ ET   L T    +         G  +   + D  + +  
Sbjct: 145 -YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWD 203

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
                 I      Q   S + LK                 ++S   D+ V+IWD +TG+ 
Sbjct: 204 VETGNCIHTLTGHQSLTSGMELKD--------------NILVSGNADSTVKIWDIKTGQC 249

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER------P 234
           L+       H+  +T      + +  +T S D + KLWD +T E I+  VT         
Sbjct: 250 LQTLQGPNKHQSAVTC--LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307

Query: 235 VNAVTMSPLLDHVCIG-EPQTIKFMLLVYLF 264
           V  +  S       +G    T +  LLV  F
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT- 231
           W     K  K      GH   + +      G+  ++GS D + K+W A T + ++T V  
Sbjct: 1   WRRGELKSPKVL---KGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 56

Query: 232 ERPVNAVTMSPLLDHVCIGEPQTIKFM 258
              V +  M   +      +     + 
Sbjct: 57  TGGVWSSQMRDNIIISGSTDRTLKVWN 83

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
            +S  +LKG    +   +       I+S  +D  +++W   TGK L+      GH   + 
Sbjct: 6   LKSPKVLKGHDDHVITCLQ-FCGNRIVSGSDDNTLKVWSAVTGKCLRTL---VGHTGGVW 61

Query: 196 SLAKAADGSHF 206
           S     +    
Sbjct: 62  SSQMRDNIIIS 72

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 12/78 (15%)

Query: 22  GDLLFSCAKDHTPTVWFADNGERLGTYR-----GHNGAVWCCDVSRDSMTLITGSADQTA 76
            + + + + D T  +W    GE +         G  G VW    S   +    GS + T 
Sbjct: 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329

Query: 77  KLWNVETGAQLFTFNFDS 94
           +        +L   +FD 
Sbjct: 330 E-------TKLLVLDFDV 340

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (168), Expect = 5e-14
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           +  HE  +  LK+   G    S  KD+    W    G  +      + +V  CD+S D  
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK 319

Query: 66  TLITGSADQTAKLWNV 81
            ++TGS D+ A ++ V
Sbjct: 320 YIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 3e-13
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213
           +    +  +S G+D ++  W T  G  + +    +    ++ S   + D  + +TGS DK
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQ----SKESSSVLSCDISVDDKYIVTGSGDK 328

Query: 214 SAKLWD 219
            A +++
Sbjct: 329 KATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 5e-08
 Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 2/114 (1%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
            R +        +  L Y   G+ L    +     V   +  ++      H   V     
Sbjct: 215 GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKF 273

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTD 113
           +      ++   D     W    GA +F     S   S D +V    +   + D
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 190 HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCI 249
           H+  + SL  A  G  F++   D     W       I        V +  +S    ++  
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT 323

Query: 250 G-EPQTIKFMLLVY 262
           G   +      ++Y
Sbjct: 324 GSGDKKATVYEVIY 337

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 8e-07
 Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 9/115 (7%)

Query: 9   HERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
             +P        DG +       D         +  ++ T   H   V    +S  +  +
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHV 66

Query: 68  ITGSADQTAKLWNVETG------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFM 116
            TG      K+W++         +QL   N D+  RS          ++  +   
Sbjct: 67  YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 6/84 (7%)

Query: 2   RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHNGAVW 56
           R I    H   +  +  +     +++        VW   +               +  + 
Sbjct: 43  RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIR 101

Query: 57  CCDVSRDSMTLITGSADQTAKLWN 80
            C +  D  TLI G    T  +W+
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWD 125

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 11/97 (11%), Positives = 30/97 (30%), Gaps = 11/97 (11%)

Query: 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
             +    DA++        + +        H + + ++  +    H  TG      K+WD
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINT----LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWD 78

Query: 220 ART------LELIKTYVTERPVNAVTMSPLLDHVCIG 250
                    +  +     +  + +  + P    + +G
Sbjct: 79  ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 10/67 (14%), Positives = 17/67 (25%), Gaps = 3/67 (4%)

Query: 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE--SDKETGHKKTITSLAKAADG 203
              +         R + + G+   V++WD                     I S     DG
Sbjct: 51  GEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 204 SHFLTGS 210
              + G 
Sbjct: 110 CTLIVGG 116

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 5e-13
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 21  DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80
           D   + S + D T  VW     E + T  GH   + C         +++GS+D T +LW+
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWD 204

Query: 81  VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 140
           +E GA L                  ++     D  +++     +       A  G   + 
Sbjct: 205 IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV---WDLVAALDPRAPAGTLCLR 261

Query: 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
            L    GR+ R  +      I+S+  D  + IWD
Sbjct: 262 TLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 3e-11
 Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 23/199 (11%)

Query: 28  CAKDHTPTVW-FADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86
           C+KD +  VW  A   +                V  D   +++ S D+T K+WN  T   
Sbjct: 111 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 170

Query: 87  LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146
           + T N      +        +   ++D  + L        +      +            
Sbjct: 171 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE------------ 218

Query: 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE------TGHKKTITSLAKA 200
                      N+ I+S   D  +++WD       +             H   +  L   
Sbjct: 219 --ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ-- 274

Query: 201 ADGSHFLTGSLDKSAKLWD 219
            D    ++ S D +  +WD
Sbjct: 275 FDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 6e-11
 Identities = 48/251 (19%), Positives = 84/251 (33%), Gaps = 20/251 (7%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
               + +  L+Y  D   + S  +D+T  +W  +  E      GH G+V C     D   
Sbjct: 12  SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERV 67

Query: 67  LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126
           +ITGS+D T ++W+V TG  L T      A          +   + D  + +        
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK 186
           I                    R    V    ++ I+SA  D  +++W+T T + ++    
Sbjct: 128 ITLRR-----------VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR---- 172

Query: 187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH 246
            T +                ++GS D + +LWD      ++       +           
Sbjct: 173 -TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRI 231

Query: 247 VCIGEPQTIKF 257
           V       IK 
Sbjct: 232 VSGAYDGKIKV 242

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 11/85 (12%)

Query: 5   LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---------LGTYRGHNGAV 55
           L               D   + S A D    VW                L T   H+G V
Sbjct: 211 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 270

Query: 56  WCCDVSRDSMTLITGSADQTAKLWN 80
           +   +  D   +++ S D T  +W+
Sbjct: 271 FR--LQFDEFQIVSSSHDDTILIWD 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.9 bits (156), Expect = 2e-12
 Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 6/171 (3%)

Query: 12  PLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLIT 69
           P++   +NKD   +  C  +H   ++        ++   + HNG V   D + DS  ++T
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 70  GSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR 129
              D+ A +W ++      T       R+                      +I       
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 130 DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           D            K  +  +    W P +  + +   D   RI+     ++
Sbjct: 129 DWWVCKHIK----KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV 175

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 33/203 (16%), Positives = 56/203 (27%), Gaps = 21/203 (10%)

Query: 27  SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86
                 TP       GE +       G V     S +   +   S D T  L + +    
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235

Query: 87  L-FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145
           +    +   P  +V F     L     D                D         L   G 
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGHDC--------FPVLFTYDS----AAGKLSFGGR 283

Query: 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-- 203
                ++    L         D       +        +  ++ HK +++ ++  + G  
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAA----AGAGLDSLHKNSVSQISVLSGGKA 339

Query: 204 --SHFLTGSLDKSAKLWDARTLE 224
             S F T  +D    +WD R+LE
Sbjct: 340 KCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 12/129 (9%), Positives = 26/129 (20%), Gaps = 50/129 (38%)

Query: 46  GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGD 105
             +      + C   ++D   +     +    ++                          
Sbjct: 1   AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW------------------- 41

Query: 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165
                                            V  LK   G++    W P +  I++ G
Sbjct: 42  -------------------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCG 70

Query: 166 EDAIVRIWD 174
            D    +W 
Sbjct: 71  TDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 6/58 (10%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPVNAVTMSP 242
           +   + I+  A   D +       +    +++    + ++ +  +     V  V  +P
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 25/239 (10%), Positives = 58/239 (24%), Gaps = 18/239 (7%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVW--FADNGERLGTYRGHNGAVWCCDVSRD 63
           +K H   +T + +  D + + +C  D    VW       +        N A  C   + +
Sbjct: 47  LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 106

Query: 64  SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123
                 GS  +   +   E     +                D             +    
Sbjct: 107 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 166

Query: 124 VKRIARDPADQGGESVLI------------LKGPQGRINRAVWGPLNRTIISAGEDAIVR 171
           +        ++                        G ++   +      +     D+ V 
Sbjct: 167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC 226

Query: 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230
           + D +    +     ET     + ++    + S    G  D    L+   +     ++ 
Sbjct: 227 LADADKKMAVATLASETLP---LLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFG 281

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 11/72 (15%), Positives = 17/72 (23%), Gaps = 6/72 (8%)

Query: 21  DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS----MTLITGSADQTA 76
                F        +   A  G  L +   H  +V    V            T   D   
Sbjct: 296 TARERFQNLDKKASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 353

Query: 77  KLWNVETGAQLF 88
            +W+V +     
Sbjct: 354 SIWDVRSLESAL 365

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.1 bits (154), Expect = 3e-12
 Identities = 26/310 (8%), Positives = 78/310 (25%), Gaps = 60/310 (19%)

Query: 1   MRPI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR---GHNGAVW 56
           M+ + + +  +  ++ +K      LL   + D + TV+  D   +         +   + 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 57  CCDVSRDS-MTLITGSADQTAKL------------------------------------- 78
           CC+   ++ + +  G+                                            
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120

Query: 79  ------WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 132
                  +            +  + +             +   +   +   V+       
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180

Query: 133 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL----------- 181
           +    ++          + A+          +  D  V +   +                
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240

Query: 182 -KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
            + + K+T     + S+  +       T   D     W+ +T + IK +      + V +
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300

Query: 241 SPLLDHVCIG 250
           +   + +C+ 
Sbjct: 301 ACSDNILCLA 310

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
                 P+  ++++     L++   D   + W     +++  +   N       ++    
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDN 305

Query: 66  TLITGSADQTAKLWNV 81
            L   ++D T K    
Sbjct: 306 ILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 16/112 (14%)

Query: 18  YNKDGDLLFSCAKDHTPTVWFADNGERL---------------GTYRGHNGAVWCCDVSR 62
             K+ +     + D    V F D+                            V   + S 
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261

Query: 63  DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTD 113
               L T  +D     WN++T  ++  F   +    V  A   + L + T+D
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 3e-08
 Identities = 27/228 (11%), Positives = 63/228 (27%), Gaps = 52/228 (22%)

Query: 18  YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA----VWCCDVSRDSMTLITGSAD 73
            + +   L     +     +     E        +G          + ++       S D
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID 215

Query: 74  QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133
               +   +     +                                       ++  A 
Sbjct: 216 GRVAVEFFDDQGDDYN-------------------------------------SSKRFAF 238

Query: 134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT 193
           +     L        +N   + P ++ + +AG D I+  W+ +T K +K   K   ++ +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK--FNEDS 296

Query: 194 ITSLAKAADGSHFLTGSLDKSAKLWDA--RTLELIKTYV-----TERP 234
           +  +A     +     + D + K   A  +T+EL  + +      E P
Sbjct: 297 VVKIA--CSDNILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYENP 342

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 1e-11
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 12/145 (8%)

Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGD 105
           T RGH  +V  C +  +   +ITG+ D+  ++++      L   +  D    ++ +A G 
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165
            L   +TD  + +                             R    V     + I++  
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHN----------STVRCLDIVEYKNIKYIVTGS 115

Query: 166 EDAIVRIWDTETGKLLKESDKETGH 190
            D  + +W       + +  +E  +
Sbjct: 116 RDNTLHVWKLPKESSVPDHGEEHDY 140

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 45/329 (13%), Positives = 93/329 (28%), Gaps = 94/329 (28%)

Query: 6   MKGHERP-LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
           ++GH    +T L++  + + + + A D    V+ + N + L    GH+G VW    +   
Sbjct: 8   LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 65  MTL-------------------------------------------ITGSADQTAKLWNV 81
           + +                                           +TGS D T  +W +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 82  ETGAQLFTFNFDSPARSVDFAVGD-----------KLAVITTDPFMELNSAIHVKRIARD 130
              + +     +     V     +             +V T      +  +         
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG------------ 178
                 + + IL G   RI   ++    +  ISA  D  +RIWD E G            
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 179 -----------------------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215
                                       S K + H   ++++       + L    +   
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF 305

Query: 216 KLWDARTLELIKTYVT--ERPVNAVTMSP 242
            +++ R+ +L+   +      + +V    
Sbjct: 306 NIYNLRSGKLVHANILKDADQIWSVNFKG 334

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 2e-09
 Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 17/202 (8%)

Query: 18  YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77
            +  G+++ S + D+T  VW     + L    GH   ++      +    I+ S D T +
Sbjct: 167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 226

Query: 78  LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 137
           +W++E G  ++T    +    +       L     D  +    A    R           
Sbjct: 227 IWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH------ 280

Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
                      ++      ++  I+ +G +    I++  +GKL+            I S+
Sbjct: 281 --------HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA--NILKDADQIWSV 330

Query: 198 AKAADGSHFLTGSLDKSAKLWD 219
                         D  + L  
Sbjct: 331 NFKGKT-LVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 5e-06
 Identities = 7/80 (8%), Positives = 23/80 (28%), Gaps = 2/80 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCD 59
                   H   L+ +      D +     ++   ++   +G+ +          +W  +
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVN 331

Query: 60  VSRDSMTLITGSADQTAKLW 79
               ++ +     D  + L 
Sbjct: 332 FKGKTL-VAAVEKDGQSFLE 350

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 61.7 bits (148), Expect = 2e-11
 Identities = 29/250 (11%), Positives = 58/250 (23%), Gaps = 32/250 (12%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER----LGTYRGHNGAVWCCDVS 61
                R +     + DG  +++                       T  G           
Sbjct: 84  PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM 143

Query: 62  RDSMTLITGSADQTA-------KLWNVETGAQLFTFNFDSPARSVDFAVGDKLA------ 108
              + L+  + D +           +V+TG         +  R    A            
Sbjct: 144 PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSP 203

Query: 109 ----------VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158
                         D   +  +A  +          G                 +  P +
Sbjct: 204 RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD 263

Query: 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
              I    +  +  +D +  KL+K ++       T   +A    G     G       ++
Sbjct: 264 PNQIYGVLNR-LAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318

Query: 219 DARTLELIKT 228
           +  TLE +K 
Sbjct: 319 NPDTLEKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.8 bits (112), Expect = 6e-07
 Identities = 6/99 (6%), Positives = 19/99 (19%), Gaps = 2/99 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
                             +            +    +     + +      +   +C   
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAA-NLDHTYYCVAF 299

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV 99
            +    L  G       ++N +T  ++          S 
Sbjct: 300 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMST 338

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.9 bits (107), Expect = 3e-06
 Identities = 23/274 (8%), Positives = 57/274 (20%), Gaps = 37/274 (13%)

Query: 2   RPILMKGHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERL------GTYRGHNGA 54
           +  +M     P        D    +              D  +                +
Sbjct: 32  KSCVMPDKFGP-GTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS 90

Query: 55  VWCCDVSRDSMTLITGSADQTAKLWNVETG---------------AQLFTFNFDSPARSV 99
           ++   +S D   +            +                     + TF        +
Sbjct: 91  MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 100 DFAVGDKLA-------VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152
             A    L         +         +        +  +          + P+   +  
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 153 VW----GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT 208
                     +   +A         D +TGK   +        +   +  ++    + + 
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF--ADLTELYFTGLRSPKDPNQIY 268

Query: 209 GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242
           G L+     +D +  +LIK    +     V    
Sbjct: 269 GVLN-RLAKYDLKQRKLIKAANLDHTYYCVAFDK 301

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 10/86 (11%), Positives = 21/86 (24%), Gaps = 3/86 (3%)

Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAK 216
           +  +I       + + D  +  + K        K    +   A D    ++  +      
Sbjct: 8   HEYMIVTNYPNNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 65

Query: 217 LWDARTLELIKTYVTERPVNAVTMSP 242
             D  T +             V  S 
Sbjct: 66  GIDLDTCKNTFHANLSSVPGEVGRSM 91

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 14/214 (6%), Positives = 43/214 (20%), Gaps = 16/214 (7%)

Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV---GDKLAVITTDPFM 116
           +      +I  +      + +V +     +             +        V+      
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH--- 60

Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
                I+   +             +       +      P  + + +             
Sbjct: 61  --YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

Query: 177 TG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA-------KLWDARTLELIKT 228
                L+      G +             + +  + D S           D +T +    
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178

Query: 229 YVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY 262
                       +P + +    +    +F +L  
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT 212

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 17/260 (6%), Positives = 49/260 (18%), Gaps = 31/260 (11%)

Query: 21  DGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTL-ITGSADQTAKL 78
             + +      +   V    +     +             ++ D+ T  +  +       
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 79  WNVETGAQLFTFNF--------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR- 129
            +++T    F  N          S         G ++           +  +        
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126

Query: 130 -DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD-------------- 174
              AD      +       ++            ++  +   + +                
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNR 186

Query: 175 ----TETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDARTLELIKTY 229
                                  + ++A+  D      T  L       D +T +     
Sbjct: 187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE 246

Query: 230 VTERPVNAVTMSPLLDHVCI 249
             +      T          
Sbjct: 247 FADLTELYFTGLRSPKDPNQ 266

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.2 bits (141), Expect = 9e-11
 Identities = 14/49 (28%), Positives = 19/49 (38%)

Query: 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90
          G       GHN A+     S D  TL +  A+     W++ TG     F
Sbjct: 2  GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 50

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 7e-09
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213
           W P N  + +   D  V +W+           K      ++ S+    + +  ++   D 
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDS 290

Query: 214 SAKLWD 219
           + K W+
Sbjct: 291 NIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.1 bits (120), Expect = 4e-08
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 189 GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDH 246
           GH K IT+L+ +ADG    +   +     WD  T    + +       +  +  +   D 
Sbjct: 10  GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 247 VCIGEPQTIKFM 258
             +     +K +
Sbjct: 70  FTVSWDDHLKVV 81

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.4 bits (118), Expect = 9e-08
 Identities = 39/287 (13%), Positives = 72/287 (25%), Gaps = 35/287 (12%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDS 64
             GH + +T L  + DG  LFS   +     W    G     +   H   +     +   
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 65  MTLITGSADQTAKLWNVETGAQLFTFNF---DSPARSVDFAVGDKLAVITTD-------- 113
                   D    +    +G            S    +  +    +AV            
Sbjct: 68  DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127

Query: 114 -------------------PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154
                                  +       ++          S +        I    +
Sbjct: 128 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187

Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
                 +++  +   V  +       L  ++  T H   +  ++ + D     TGSLD S
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247

Query: 215 AKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVCIGEPQTIKF 257
             +W+          +        VN+V        V  G+   IKF
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 3e-07
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
           +  G    I         +T+ SA  +  +  WD  TG   +       H   IT + 
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF--PDVHATMITGIK 62

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.1 bits (107), Expect = 2e-06
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 26  FSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81
            + + D++  VW  +      +     H  +     +  +  T+++   D   K WNV
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.4 bits (134), Expect = 9e-10
 Identities = 27/226 (11%), Positives = 51/226 (22%), Gaps = 18/226 (7%)

Query: 15  YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ 74
            +  +     L       T    +                +     +RD   L     D 
Sbjct: 97  AIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDL 156

Query: 75  TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL--NSAIHVKRIARDPA 132
              + + E G  +      S                  +    +        K I     
Sbjct: 157 --HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214

Query: 133 DQGGESVLILKGPQGRINRAVWGPLNRTI----------ISAGEDAIVRIWDTETGKLLK 182
                 +L +    G +       ++              + G   ++  +D E    +K
Sbjct: 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIK 274

Query: 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
                     +  S+  + DGS    G        +DA TLE    
Sbjct: 275 R----VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.8 bits (130), Expect = 3e-09
 Identities = 28/288 (9%), Positives = 57/288 (19%), Gaps = 12/288 (4%)

Query: 23  DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMTL-ITGSADQTAKLW 79
           D + + A+     V   +           +          +        T +  ++    
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 80  NVETGAQLFTFNFDSP------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133
           ++ TG  L   +  +P            +   K   I   P     +   V+       D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT-ETGKLLKESDKETGHKK 192
               S         +I    W      +   G D  V   +     +       E     
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEP 252
               LA           +        D    +          ++  T    +  V I + 
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 253 QTIKFMLLVYLFVLFLDILFYNLYCSASRKYIYDDLLNFDAGPQHFIF 300
                 +       F        +       I    +           
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASI--KRVPLPHSYYSVNV 287

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 11/93 (11%), Positives = 26/93 (27%), Gaps = 3/93 (3%)

Query: 4   ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
             ++  +        N      F     +    +  +    +        + +  +VS D
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTD 290

Query: 64  SMTLITGSADQTAKLWNVETGAQLFTFNFDSPA 96
             T+  G A      ++ ET  +    +    A
Sbjct: 291 GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNA 323

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 29/267 (10%), Positives = 55/267 (20%), Gaps = 32/267 (11%)

Query: 4   ILMKGHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD--- 59
           I +               G + + +  K  +        GE LG                
Sbjct: 27  ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86

Query: 60  --VSRDSMTLITGSADQTAKL------------WNVETGAQLFTFNFDSPARSVDFAVGD 105
             +S D  TL    +    +L            ++ ET ++   F        + +A   
Sbjct: 87  AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG 146

Query: 106 KLAVIT----------TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155
                               +E       +       D                      
Sbjct: 147 SKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTAR 206

Query: 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215
                         +   D ETG++     +        T    A + +           
Sbjct: 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST----AVNPAKTRAFGAYNVL 262

Query: 216 KLWDARTLELIKTYVTERPVNAVTMSP 242
           + +D      IK         +V +S 
Sbjct: 263 ESFDLEKNASIKRVPLPHSYYSVNVST 289

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 20/198 (10%), Positives = 40/198 (20%), Gaps = 14/198 (7%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
              +   G +  +   +     +     + +                      A      
Sbjct: 146 GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELN 119
            +D       +        ++ETG                      K         +E  
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF 265

Query: 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
                  I R P      SV                    T+   G    +  +D ET +
Sbjct: 266 DLEKNASIKRVPLPHSYYSV-------------NVSTDGSTVWLGGALGDLAAYDAETLE 312

Query: 180 LLKESDKETGHKKTITSL 197
              + D       ++ S+
Sbjct: 313 KKGQVDLPGNASMSLASV 330

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.1 bits (133), Expect = 1e-09
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 204
             G +    W P    I SA  D  ++IW+  T K+ K     T  +     +       
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQ 294

Query: 205 HFLTGSLDKSAKLWD 219
             ++ S +      +
Sbjct: 295 ALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.1 bits (128), Expect = 5e-09
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 17  KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG-AVWCCDVSRDSMTLITGSADQT 75
            ++ DG  + S + D T  +W     +   T             +      L++ SA+  
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 76  AKLWNVE 82
               N E
Sbjct: 305 INFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 6e-09
 Identities = 9/80 (11%), Positives = 18/80 (22%), Gaps = 1/80 (1%)

Query: 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD 73
            L     GD +  C    +       +      Y  H+        S       +G   
Sbjct: 21 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 74 QTAKLWNVETGAQLFTFNFD 93
             ++W+      +      
Sbjct: 80 GNVRIWDTTQTTHILKTTIP 99

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 35/262 (13%), Positives = 69/262 (26%), Gaps = 16/262 (6%)

Query: 5   LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWCCDVSR 62
           +   H    T  K +  G    S        +W       +   T    +G V       
Sbjct: 53  IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112

Query: 63  DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI 122
           +S  +      +                N    AR+++        V           + 
Sbjct: 113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS-------VDFKPSRPFRIISG 165

Query: 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
                         +           ++   + P      S G D  + +++   G    
Sbjct: 166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 225

Query: 183 ESDKETGHKKTITSL----AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVN 236
             + ++      +        + DG+   + S DK+ K+W+  TL++ KT    T     
Sbjct: 226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 285

Query: 237 AVTMSPLLDH-VCIGEPQTIKF 257
            + +       V I     I F
Sbjct: 286 QLGIIWTKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 4/73 (5%)

Query: 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH 205
           +G        P    I      ++       +    +     T H    T    +  G +
Sbjct: 17  RGTAVVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIY---TEHSHQTTVAKTSPSGYY 72

Query: 206 FLTGSLDKSAKLW 218
             +G +  + ++W
Sbjct: 73  CASGDVHGNVRIW 85

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 14/188 (7%), Positives = 38/188 (20%), Gaps = 53/188 (28%)

Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK 106
             + H+  ++           ++ S D   K+W+ +        +               
Sbjct: 9   AGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDK-------------- 52

Query: 107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166
                       +  +H   +      Q  E                       + +   
Sbjct: 53  ----------SYSHFVHKSGLHHVDVLQAIER---------------DAFELCLVATTSF 87

Query: 167 DAIVRIWDTETGKLLKESDKETG-------HKKTITSLAKAADGSH-----FLTGSLDKS 214
              +  +        K+   E          K +  +L   A          +   +  +
Sbjct: 88  SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT 147

Query: 215 AKLWDART 222
             +W    
Sbjct: 148 TYIWKFHP 155

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 24/193 (12%), Positives = 51/193 (26%), Gaps = 20/193 (10%)

Query: 45  LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG 104
           + +    +      D+S   + + TG  + T ++  + T   L+ F       +   ++ 
Sbjct: 177 VESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235

Query: 105 DKLAVIT------------TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152
                                      +    +  +        ++ L        +   
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295

Query: 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI----TSLAKAADGSHFLT 208
            +     T+ SAG D  +R WD +T + +        H   I      LA    G     
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERIT---TLNMHCDDIEIEEDILAVDEHGDSLAE 352

Query: 209 GSLDKSAKLWDAR 221
             +     L    
Sbjct: 353 PGVFDVKFLKKGW 365

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 5e-08
 Identities = 36/293 (12%), Positives = 74/293 (25%), Gaps = 58/293 (19%)

Query: 17  KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM----------- 65
           +   +  L+ + +       +     +           +   D+ + S            
Sbjct: 74  RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR 133

Query: 66  ----TLITGSADQTAKLWNVETGAQ-------------------LFTFNFDSPARSVDFA 102
                L+      T  +W     A                             A SVD +
Sbjct: 134 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 193

Query: 103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162
               +A    +        + +  ++        ES   +      I    + P    + 
Sbjct: 194 ERGLIATGFNNGT------VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 163 SAGEDAIV---RIWDTETGKLLKESDKETG----------HKKTITSLAKAADGSHFLTG 209
            A +        +++TE G+ +      T           H   + SL+    G    + 
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 210 SLDKSAKLWDARTLELIKTYVT-----ERPVNAVTMSPLLDHVCIGEPQTIKF 257
             D   + WD +T E I T        E   + + +    D +       +KF
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF 360

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 34/308 (11%), Positives = 74/308 (24%), Gaps = 60/308 (19%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDV 60
           K H+  +  +          SC+ D    VW     +      +  ++  H   +   DV
Sbjct: 11  KAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 61  SR-------DSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-----------------A 96
            +       +   + T S       + +    +     F+                    
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 97  RSVDFAVGDKLAVITTD------PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150
            S D  +  +L             F       +   +   P  +   +V     P     
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188

Query: 151 RAVWGPLNRTIISAGEDAIVRI---WDTETGKLLKESDKETGHKKTITSLAKAADGSHFL 207
                     I +   +  V+I            +       +  +I S+  +  GS   
Sbjct: 189 SVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 208 TGSLDKSA---KLWDARTLELIKTY--------------VTERPVNAVTMSPLLD-HVCI 249
                 S     L++    E I +                    V +++ +   +     
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 250 GEPQTIKF 257
           G    ++F
Sbjct: 308 GWDGKLRF 315

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 16/87 (18%), Positives = 22/87 (25%), Gaps = 4/87 (4%)

Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV----WCCDVSRDS 64
           H   +  L +N  G+ L S   D     W     ER+ T   H   +        V    
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347

Query: 65  MTLITGSADQTAKLWNVETGAQLFTFN 91
            +L          L            N
Sbjct: 348 DSLAEPGVFDVKFLKKGWRSGMGADLN 374

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 8e-09
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 19  NKDGDLLFSCAKDHTPTVW-FADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77
             + DL+ + + D    ++      + +     H   V        S TL++  AD   K
Sbjct: 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIK 282

Query: 78  LWNV 81
            WNV
Sbjct: 283 RWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.2 bits (115), Expect = 2e-07
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 41  NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD 100
           + E L T  GHN  +    V+     LI+GS D     W+  +  Q  +    +   S+D
Sbjct: 2   HDEVLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQDHS----NLIVSLD 53

Query: 101 FAVGDKLAVITTDPFM 116
            +   + + I+ D  +
Sbjct: 54  NSKAQEYSSISWDDTL 69

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 7e-07
 Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 3/68 (4%)

Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211
                    + +   D  + I+  +     K       HK  + +L         ++   
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWETPS-TLVSSGA 277

Query: 212 DKSAKLWD 219
           D   K W+
Sbjct: 278 DACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 4e-05
 Identities = 26/269 (9%), Positives = 67/269 (24%), Gaps = 41/269 (15%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH + +T L  N     L S + D     W + +       + H+  +   D S+   
Sbjct: 9   ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQE 59

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHV 124
                  D        +           +        +  D   +I      ++  ++ +
Sbjct: 60  YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119

Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR------------- 171
                  +       + L+         +        +     A                
Sbjct: 120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA 179

Query: 172 ----------------IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215
                           +  +       + +  +       +  +  +     TGSLD + 
Sbjct: 180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 239

Query: 216 KLWDART-LELIKTYVT-ERPVNAVTMSP 242
            ++  +  +++IK     +  VN +    
Sbjct: 240 FIYSVKRPMKIIKALNAHKDGVNNLLWET 268

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 8e-05
 Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 12/71 (16%)

Query: 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
            E +  + G    I      PL    IS   D  +  W + +            H   I 
Sbjct: 3   DEVLKTISGHNKGITALTVNPL----ISGSYDGRIMEWSSSSM--------HQDHSNLIV 50

Query: 196 SLAKAADGSHF 206
           SL  +    + 
Sbjct: 51  SLDNSKAQEYS 61

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 6e-04
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 133 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
            +  + +  L   +  +N  +W     T++S+G DA ++ W+
Sbjct: 245 KRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 26/223 (11%), Positives = 56/223 (25%), Gaps = 27/223 (12%)

Query: 26  FSCAKDHTPTVWFADNGERLGTYRGH-------NGAVWCCDVSRDSMTL-ITGSADQTAK 77
           +  +      V   +                            RD     +    + T +
Sbjct: 123 YQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE 182

Query: 78  LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 137
           + + E       F  + PA S       +L   T    +                +   E
Sbjct: 183 ITHTEVFHPEDEFLINHPAYSQK---AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE 239

Query: 138 SVL----------ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE 187
           +             +   +      +                V + D +TG+ L + +  
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-- 297

Query: 188 TGHKKTITSLAKAADGSHFL--TGSLDKSAKLWDARTLELIKT 228
                 I S+  + D    L    + DK+  + DA + E +++
Sbjct: 298 --MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 338

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 21/198 (10%), Positives = 42/198 (21%), Gaps = 36/198 (18%)

Query: 8   GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSM 65
             E  + +  Y++    L               +G+   L        A           
Sbjct: 192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 251

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
             +            V+   +            +D   G++LA               + 
Sbjct: 252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--------EID 303

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
            I         + +L                       +  D  + I D E+G+ L+   
Sbjct: 304 SINVSQ---DEKPLLY--------------------ALSTGDKTLYIHDAESGEELR--- 337

Query: 186 KETGHKKTITSLAKAADG 203
                      +  A  G
Sbjct: 338 SVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 6e-05
 Identities = 22/251 (8%), Positives = 55/251 (21%), Gaps = 33/251 (13%)

Query: 19  NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-------VWCCDVSRDSMTLITGS 71
           +     +    +     V+              +          W   ++ D  TL+   
Sbjct: 65  STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124

Query: 72  ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 131
                 +  V+   + F    D P     F        +          A   +      
Sbjct: 125 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 184

Query: 132 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK 191
             +           +  IN   +      ++       +   D  +G   K         
Sbjct: 185 HTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALT 238

Query: 192 KTITSLAKAADGSHFLTGSLD--------------------KSAKLWDARTLELIKTYVT 231
           +   +      G   +                         +   + DA+T E +  +  
Sbjct: 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM 298

Query: 232 ERPVNAVTMSP 242
              ++++ +S 
Sbjct: 299 GHEIDSINVSQ 309

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 212
           +    ++   + G DA +R+WD  T K +++   +            A      ++ SLD
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 213 KSAKLWD 219
            +   ++
Sbjct: 318 GTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 1e-07
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 18  YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS---RDSMTLITGSADQ 74
              D     +   D T  VW     + +  +      +    V      +  +I+ S D 
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 75  TAKLWNV 81
           T   + +
Sbjct: 319 TLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 33/266 (12%), Positives = 75/266 (28%), Gaps = 22/266 (8%)

Query: 9   HERPLTYLKY--NKDGDLLFSCAKDHTPTVWFADNGER--------LGTYRGHNGAVWCC 58
               +T +K+   K    L S  +     VW     +            ++   G +   
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 59  DVSRDSMTLITGSA--DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM 116
               +   L       D      + ++G  L   +  S   +       +     T    
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
                          +D+        K      +          +I+ G D  +  +D +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHH-----KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236

Query: 177 TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--- 233
           +G+ LK  + +    +         D   F T   D + ++WD  T + ++ +  ++   
Sbjct: 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL 296

Query: 234 PVNAVTMSPLLDH--VCIGEPQTIKF 257
               V +    +   + +    T+ F
Sbjct: 297 GNQQVGVVATGNGRIISLSLDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 3/80 (3%)

Query: 146 QGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLA--KAAD 202
           +       + P    I    G+ A VR  D    K+             +T++       
Sbjct: 17  RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76

Query: 203 GSHFLTGSLDKSAKLWDART 222
             +  +G       +W    
Sbjct: 77  SQYLCSGDESGKVIVWGWTF 96

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 4/98 (4%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV----S 61
                  +  ++++ D                F         Y   +       +     
Sbjct: 201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW 260

Query: 62  RDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV 99
            DS    T  AD T ++W+V T   +  +  D      
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 298

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.5 bits (122), Expect = 4e-08
 Identities = 16/236 (6%), Positives = 50/236 (21%), Gaps = 24/236 (10%)

Query: 24  LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD-------VSRDSMTLITGSADQTA 76
           LLF                      +  +               S  +    +  A   A
Sbjct: 138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA 197

Query: 77  KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 136
               V       T   +  +++        L        ++ +       +         
Sbjct: 198 AAGIVGAQC---TGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNES 254

Query: 137 ESVLILKGPQGRI--------NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET 188
                     G          +  +   +  +                 G+         
Sbjct: 255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----I 310

Query: 189 GHKKTITSLAKAADGSHFL--TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242
            +     ++  A DG+       +  +   ++DA + +   +   ++   ++++  
Sbjct: 311 SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN 366

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.7 bits (112), Expect = 8e-07
 Identities = 19/250 (7%), Positives = 47/250 (18%), Gaps = 25/250 (10%)

Query: 14  TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL------ 67
            +   +          +     V+       +      +   +        +        
Sbjct: 78  DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC 137

Query: 68  --ITGSADQTAKLWNVETGAQLFTFNF--------DSPARSVDFAVGDKLAVITTDPFME 117
                     A   +V   +                + A     +    LA         
Sbjct: 138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA--- 194

Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
              A      A+    Q   S        G +  AV   + +  I A    +    D   
Sbjct: 195 -APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNE 253

Query: 178 GKLLKESDKETGHKKTITSLAK-----AADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
                ++ +  G +                       +  ++     A   +        
Sbjct: 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG 313

Query: 233 RPVNAVTMSP 242
              +A+  + 
Sbjct: 314 HDSDAIIAAQ 323

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 10/177 (5%), Positives = 38/177 (21%), Gaps = 32/177 (18%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
                     + N  G L+++ A         A          G+       +       
Sbjct: 208 GAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267

Query: 67  LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126
           ++    +    +      ++                  +  + +T             + 
Sbjct: 268 MVAKLKNTDGIMILTVEHSRSCLAA------------AENTSSVTASVG---------QT 306

Query: 127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
                     ++++      G          +    ++    ++ I+D  + +    
Sbjct: 307 SGPISNGHDSDAIIA--AQDGA---------SDNYANSAGTEVLDIYDAASDQDQSS 352

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 30/241 (12%), Positives = 62/241 (25%), Gaps = 16/241 (6%)

Query: 18  YNKDGDLLFSCA--KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT 75
            + D + LFS          +      E          AV    +S     L     D  
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGK 84

Query: 76  AKLWNVETGAQLFTFNFD------SPARSVDFAVGDKLAVIT--TDPFMELNSAIHVKRI 127
             + ++                  S   S      DK A+      P   +     ++  
Sbjct: 85  VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144

Query: 128 ARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETGKLLKESDK 186
                 +G         P+ R+   +        I++  E   + + D      LK ++ 
Sbjct: 145 KIQS-TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI 203

Query: 187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-DARTLELIKTYVTERPVNAVTMSPLLD 245
                + +          +F+T +  ++  +  D +  +L+    T              
Sbjct: 204 SAE--RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV 261

Query: 246 H 246
           H
Sbjct: 262 H 262

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 24/215 (11%), Positives = 54/215 (25%), Gaps = 14/215 (6%)

Query: 16  LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-----GHNGAVWCCDVSRDSMTLI-T 69
            + +  G  LF   +D    +      E                        +    I  
Sbjct: 67  SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAG 126

Query: 70  GSADQTAKLWNVETGAQLFTFNFDSPA-RSVDFAVGDKLAVITTDPFMELN--SAIHVKR 126
                   + + ET       +         ++    ++A I    +      +     +
Sbjct: 127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 186

Query: 127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLKESD 185
           I                  +  ++       +R  I+A      + + DT+ GKL+   D
Sbjct: 187 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 246

Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
                        + A+  H   G +  ++ + D 
Sbjct: 247 ----TGGQTPHPGRGANFVHPTFGPVWATSHMGDD 277

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 4/91 (4%)

Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
           V +    +       W   N   ++  +   + + D  T ++      +TG+   +    
Sbjct: 13  VHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTV--LDTGY--AVHISR 68

Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTY 229
            +A G +      D    + D    E     
Sbjct: 69  LSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 7/67 (10%), Positives = 16/67 (23%), Gaps = 2/67 (2%)

Query: 26  FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETG 84
                 +T ++      +                V+ D   + +  S   T  + +  T 
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276

Query: 85  AQLFTFN 91
               T  
Sbjct: 277 TITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 5/62 (8%)

Query: 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDA 220
           I+  E   + + D  + K+                   + DG+  ++  +      + D 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIP----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61

Query: 221 RT 222
            T
Sbjct: 62  AT 63

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213
               N   ++  +   + + D ++ K++K    +TG+   +     +A G + L    D 
Sbjct: 28  LDLPNLFSVTLRDAGQIALVDGDSKKIVKV--IDTGY--AVHISRMSASGRYLLVIGRDA 83

Query: 214 SAKLWDARTLELIKTYVTERPVNAVTM 240
              + D    E  K    +  + A ++
Sbjct: 84  RIDMIDLWAKEPTKVAEIKIGIEARSV 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.9
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.73
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.6
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.54
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.48
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.47
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.47
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.44
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.36
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.35
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.33
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.31
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.2
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.17
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.07
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.07
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.0
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.95
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.86
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.83
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.78
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.77
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.68
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.62
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.48
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.21
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.2
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.02
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.95
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.95
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.82
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.79
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.79
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.61
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.34
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.32
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.28
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.07
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.79
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.63
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.3
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.28
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.21
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.64
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.41
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.12
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.8
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.31
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.28
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.24
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.08
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.84
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.26
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.72
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.87
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	86.83
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	85.73

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-41  Score=270.76  Aligned_cols=245  Identities=17%  Similarity=0.249  Sum_probs=202.0

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      .+|+||.++|++++|+|++++||+|+.||+|+|||+.+++.+..+..|..+|.+++|+|+++++++++.|+.+.+|+...
T Consensus        49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~  128 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSS
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccc
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999764


Q ss_pred             CCe----eEEEe------------------------------------------eCCCceEEEEecCCceEEEeCCccee
Q 021925           84 GAQ----LFTFN------------------------------------------FDSPARSVDFAVGDKLAVITTDPFME  117 (305)
Q Consensus        84 ~~~----~~~~~------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~  117 (305)
                      ...    ...+.                                          ....+....+.+.+..++++..    
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  204 (340)
T d1tbga_         129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC----  204 (340)
T ss_dssp             SCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET----
T ss_pred             cccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeec----
Confidence            321    11111                                          1112233333333333333322    


Q ss_pred             eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEE
Q 021925          118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL  197 (305)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  197 (305)
                       ++.+.+|++      ...+....+.+|...|++++|+|++++|++|+.||.|++||++..+....+.. ..+...++++
T Consensus       205 -d~~v~i~d~------~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~-~~~~~~i~~~  276 (340)
T d1tbga_         205 -DASAKLWDV------REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSV  276 (340)
T ss_dssp             -TTEEEEEET------TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEE
T ss_pred             -CceEEEEEC------CCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc-ccccCceEEE
Confidence             234445544      34567788899999999999999999999999999999999999887776642 2567789999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925          198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                      +|+|++++|++|+.||.|++||+.+++++..+. |..+|++++|+|++++|++|+.|+.     +++|+
T Consensus       277 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~-----v~iWd  340 (340)
T d1tbga_         277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF-----LKIWN  340 (340)
T ss_dssp             EECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSC-----EEEEC
T ss_pred             EECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCE-----EEEeC
Confidence            999999999999999999999999999999998 8899999999999999999999987     55553

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-40  Score=262.47  Aligned_cols=238  Identities=23%  Similarity=0.367  Sum_probs=206.8

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC---------------------
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR---------------------   62 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~---------------------   62 (305)
                      ..|+||+++|++++|+|++++|+||+.||+|+|||+++++.+.++.+|.+.|.+++|+|                     
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc
Confidence            36899999999999999999999999999999999999888888777766666666554                     


Q ss_pred             ---------------------CCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeee
Q 021925           63 ---------------------DSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNS  120 (305)
Q Consensus        63 ---------------------~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  120 (305)
                                           +++.+++++.|+.+++||+++++.+..+. +...+.++++++++..+++++.     ++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~  165 (317)
T d1vyhc1          91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-----DQ  165 (317)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET-----TS
T ss_pred             cccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC-----CC
Confidence                                 45567778888999999999998888877 6778899999999999888765     44


Q ss_pred             eEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC--------------------CEEEEeeCCCcEEEEeCCCCcE
Q 021925          121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--------------------RTIISAGEDAIVRIWDTETGKL  180 (305)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~~~~dg~i~iwd~~~~~~  180 (305)
                      .+.+++..      ..+....+.+|...+.++.++|++                    ..+++++.|+.|++||++++++
T Consensus       166 ~v~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  239 (317)
T d1vyhc1         166 TVRVWVVA------TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC  239 (317)
T ss_dssp             CEEEEETT------TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred             eEEEEeec------cceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcE
Confidence            55555543      345677788899999999988753                    4688999999999999999999


Q ss_pred             eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       181 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      +..+.   +|...|.+++++|++++|++|+.||.|++||+++++++.++. |..+|++++|+|++++|++|+.|+.
T Consensus       240 ~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~  312 (317)
T d1vyhc1         240 LMTLV---GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  312 (317)
T ss_dssp             EEEEE---CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             EEEEe---CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe
Confidence            98887   799999999999999999999999999999999999999998 8899999999999999999999987

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.7e-40  Score=261.55  Aligned_cols=240  Identities=15%  Similarity=0.173  Sum_probs=202.2

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee--EEecCCCcceEEEEEcCCCcEEEEEeC--CCcEEEEe
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWCCDVSRDSMTLITGSA--DQTAKLWN   80 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~--dg~v~vwd   80 (305)
                      .+.+|.+.|++++|+|+|++||+|+.||+|++||+.+++..  ..+..|.++|.+++|+|++++|++++.  ++.+++|+
T Consensus        53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~  132 (311)
T d1nr0a1          53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL  132 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccc
Confidence            46899999999999999999999999999999999887643  567889999999999999999999876  46699999


Q ss_pred             cCCCCeeEEEe-eCCCceEEEEecCCce-EEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           81 VETGAQLFTFN-FDSPARSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        81 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      +++++....+. +...|.+++|+|++.. +++++.     ++.+.+|+..      ..+.......|...|+++.|+|++
T Consensus       133 ~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~-----d~~i~i~d~~------~~~~~~~~~~~~~~i~~v~~~p~~  201 (311)
T d1nr0a1         133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD-----DNTVAIFEGP------PFKFKSTFGEHTKFVHSVRYNPDG  201 (311)
T ss_dssp             TTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEET-----TSCEEEEETT------TBEEEEEECCCSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccceeeeccccc-----cccccccccc------ccccccccccccccccccccCccc
Confidence            99998877766 6778999999999886 444443     3456666653      346677888999999999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcEeeeecc----ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC-
Q 021925          159 RTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-  233 (305)
Q Consensus       159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  233 (305)
                      +++++++.|+.|++||+++++....+..    ..+|...|++++|+|++++|++|+.||.|++||++++++++++.... 
T Consensus       202 ~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~  281 (311)
T d1nr0a1         202 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR  281 (311)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC
Confidence            9999999999999999999888776643    23688899999999999999999999999999999999999887333 


Q ss_pred             -CeeEEEecCCCCcEEEeeCCcE
Q 021925          234 -PVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       234 -~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                       ....+.+.++++.|++++.++.
T Consensus       282 ~~~~~~~~~~~~~~l~s~s~dG~  304 (311)
T d1nr0a1         282 IEDQQLGIIWTKQALVSISANGF  304 (311)
T ss_dssp             GGGCEEEEEECSSCEEEEETTCC
T ss_pred             ccceEEEEEecCCEEEEEECCCE
Confidence             2334455566678999999987

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.7e-40  Score=266.81  Aligned_cols=241  Identities=19%  Similarity=0.213  Sum_probs=198.8

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~   87 (305)
                      .++|+|++|+|+|++||+|+.||.|+|||..+++  .+..+++|.++|.+++|+|++++|++++.|++|++||+++++..
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            4789999999999999999999999999998775  56778899999999999999999999999999999999887655


Q ss_pred             EEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925           88 FTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (305)
Q Consensus        88 ~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  164 (305)
                      ....   +...+.+++|+|+++.+++++.     ++.+.++.+.....  ..........|...|.+++|+|++++|++|
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~-----d~~i~i~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSG-----SRVISICYFEQEND--WWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEET-----TSSEEEEEEETTTT--EEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccccccceeecc-----cCcceeeeeecccc--cccccccccccccccccccccccccceecc
Confidence            5443   5678999999999999988765     44556666553221  112234456788999999999999999999


Q ss_pred             eCCCcEEEEeCCCCcEee---------------eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE
Q 021925          165 GEDAIVRIWDTETGKLLK---------------ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (305)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  229 (305)
                      +.|+.|++||........               .+.....|...|.+++|+|++++|++++.|+.|++||+++++.+..+
T Consensus       160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~  239 (371)
T d1k8kc_         160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  239 (371)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee
Confidence            999999999986532110               11112368889999999999999999999999999999999999888


Q ss_pred             e-eCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925          230 V-TERPVNAVTMSPLLDHVCIGEPQTIKF  257 (305)
Q Consensus       230 ~-~~~~v~~~~~~~~~~~l~~~~~~~~~~  257 (305)
                      . +..+|.+++|+|++++|++|.++...+
T Consensus       240 ~~~~~~v~s~~fs~d~~~la~g~d~~~~~  268 (371)
T d1k8kc_         240 ASETLPLLAVTFITESSLVAAGHDCFPVL  268 (371)
T ss_dssp             ECSSCCEEEEEEEETTEEEEEETTSSCEE
T ss_pred             ecccccceeeeecCCCCEEEEEcCCceEE
Confidence            8 778999999999999888876655443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-39  Score=258.23  Aligned_cols=240  Identities=13%  Similarity=0.134  Sum_probs=209.2

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC--CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      ..+|.+.|++++|+|+|++|++|+.||.|++||+..  ++....+..|...+.+++|+|++.++++++.|+.|++|++++
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            458999999999999999999999999999999874  455677888999999999999999999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      ++...... +...+.+++|++++..++.++.     ++.+.+|++..      .+.+. ...|...|.+++|+|++++++
T Consensus       173 ~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~-----d~~v~i~d~~~------~~~~~-~~~~~~~i~~l~~~~~~~~l~  240 (337)
T d1gxra_         173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGL-----DNTVRSWDLRE------GRQLQ-QHDFTSQIFSLGYCPTGEWLA  240 (337)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTT------TEEEE-EEECSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccccccccccccc-----ccccccccccc------ceeec-ccccccceEEEEEcccccccc
Confidence            88777666 6888999999999998888765     44556665532      23333 345788999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecC
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~  242 (305)
                      +++.|+.+++||+++++.....    .|...|++++|+|++++|++++.||.|++||+.+++++..+.+..+|.+++|+|
T Consensus       241 ~~~~d~~i~i~d~~~~~~~~~~----~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~  316 (337)
T d1gxra_         241 VGMESSNVEVLHVNKPDKYQLH----LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV  316 (337)
T ss_dssp             EEETTSCEEEEETTSSCEEEEC----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECT
T ss_pred             eecccccccccccccccccccc----ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeC
Confidence            9999999999999988776544    589999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEeeCCcEEEEEEeehhhh
Q 021925          243 LLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       243 ~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                      ++++|++|+.|+.     +++|++
T Consensus       317 d~~~l~t~s~D~~-----I~vWdl  335 (337)
T d1gxra_         317 DDKYIVTGSGDKK-----ATVYEV  335 (337)
T ss_dssp             TSCEEEEEETTSC-----EEEEEE
T ss_pred             CCCEEEEEeCCCe-----EEEEEE
Confidence            9999999999987     555554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-39  Score=257.28  Aligned_cols=245  Identities=13%  Similarity=0.175  Sum_probs=206.2

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee-----eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-----LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd   80 (305)
                      ..+|...|++++|+|+|++||+|+ ||.|+|||+.+++.     .....+|.+.|.+++|+|++++|++++.||.|++||
T Consensus        47 ~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence            348999999999999999999987 89999999976532     223357899999999999999999999999999999


Q ss_pred             cCCCCe--eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           81 VETGAQ--LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        81 ~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      +.....  ...+. +...+..+.++|++..+++++.     +..+..+++.      ..+.......|...+.+++|+++
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~i~~~~~~------~~~~~~~~~~~~~~v~~l~~s~~  194 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS-----DGNIAVWDLH------NQTLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccc-----cccccccccc------ccccccccccccccccccccccc
Confidence            875543  33333 5678899999999999887765     3344555542      34567777889999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA  237 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~  237 (305)
                      ++.+++++.|+.+++||+++++.+..+.    +...|.+++|+|++++|++++.||.+++||+++++......|...|.+
T Consensus       195 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~  270 (337)
T d1gxra_         195 GTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS  270 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEE
T ss_pred             ccccccccccccccccccccceeecccc----cccceEEEEEcccccccceeccccccccccccccccccccccccccce
Confidence            9999999999999999999999888774    788999999999999999999999999999999988877779999999


Q ss_pred             EEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925          238 VTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
                      ++|+|++++|++|+.|+.     +++|+......
T Consensus       271 v~~s~~g~~l~s~s~Dg~-----i~iwd~~~~~~  299 (337)
T d1gxra_         271 LKFAYCGKWFVSTGKDNL-----LNAWRTPYGAS  299 (337)
T ss_dssp             EEECTTSSEEEEEETTSE-----EEEEETTTCCE
T ss_pred             EEECCCCCEEEEEeCCCe-----EEEEECCCCCE
Confidence            999999999999999987     55665544333

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-39  Score=256.66  Aligned_cols=247  Identities=16%  Similarity=0.187  Sum_probs=208.1

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~   87 (305)
                      .+++.+..++++|+|+.|+.++ ++.|.+|++++++....+.+|.+.|++++|+|+|++|++|+.||+|++||+.+++..
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            3455677899999999999886 668999999999999999999999999999999999999999999999999988754


Q ss_pred             EE--Ee-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE-EEE
Q 021925           88 FT--FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IIS  163 (305)
Q Consensus        88 ~~--~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~  163 (305)
                      ..  +. +..+|.+++|+|++..+++++.+.   ...+.++++.      ..+....+.+|...|.+++|+|++++ +++
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~---~~~~~v~~~~------~~~~~~~l~~h~~~v~~v~~~~~~~~~l~s  164 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGR---ERFGHVFLFD------TGTSNGNLTGQARAMNSVDFKPSRPFRIIS  164 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCS---SCSEEEEETT------TCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred             cccccccccCccccccccccccccccccccc---cccccccccc------cccccccccccccccccccccccceeeecc
Confidence            33  33 678999999999999888876422   1224445443      23445567889999999999999975 788


Q ss_pred             eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--------eCCCe
Q 021925          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--------TERPV  235 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~v  235 (305)
                      |+.||.|++||+++++....+.   .|..+|+++.|+|++++|++++.||.|++||.++++.+..+.        |..+|
T Consensus       165 gs~d~~i~i~d~~~~~~~~~~~---~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V  241 (311)
T d1nr0a1         165 GSDDNTVAIFEGPPFKFKSTFG---EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV  241 (311)
T ss_dssp             EETTSCEEEEETTTBEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             cccccccccccccccccccccc---cccccccccccCccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999998888877   789999999999999999999999999999999998887764        45689


Q ss_pred             eEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          236 NAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      .+++|+|++++|++|+.|+.     +++|+.......
T Consensus       242 ~~~~~s~~~~~l~tgs~Dg~-----v~iwd~~t~~~~  273 (311)
T d1nr0a1         242 FGLTWSPDGTKIASASADKT-----IKIWNVATLKVE  273 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSE-----EEEEETTTTEEE
T ss_pred             cccccCCCCCEEEEEeCCCe-----EEEEECCCCcEE
Confidence            99999999999999999987     667766544443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7e-39  Score=252.24  Aligned_cols=252  Identities=16%  Similarity=0.187  Sum_probs=190.4

Q ss_pred             eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+++||.++|++++|+|+|++|++|+.||+|++||+++++.+..+. .|...|.+++|+|+++ +++++.|+.+++|+..
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSS
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccC
Confidence            4689999999999999999999999999999999999999888874 6899999999999986 5567789999999975


Q ss_pred             CCCe----eEEEeeCCCceEEEEecCCceEEEeCCcceee--------------------------------eeeEEEEE
Q 021925           83 TGAQ----LFTFNFDSPARSVDFAVGDKLAVITTDPFMEL--------------------------------NSAIHVKR  126 (305)
Q Consensus        83 ~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~  126 (305)
                      ....    .....+...+.++++++++..++.+.......                                ++.+.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d  164 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK  164 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4321    11122444555666666665555544332222                                22333333


Q ss_pred             eecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEE
Q 021925          127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF  206 (305)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  206 (305)
                      +...     .........|...|++++|+|++++|++++.|+.|++||+.++...........|...|++++|+|++++|
T Consensus       165 ~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  239 (299)
T d1nr0a2         165 LSGA-----SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL  239 (299)
T ss_dssp             EETT-----EEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred             cccc-----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence            3211     01122345788999999999999999999999999999999888777666666789999999999999999


Q ss_pred             EEEeCCCeEEEEEcCCceEEEEEe----eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925          207 LTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       207 ~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  267 (305)
                      ++|+.||.|++||+++++......    +...+.++.+ +++++|++|+.|+.     +++|++.
T Consensus       240 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~-----i~iWdl~  298 (299)
T d1nr0a2         240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSN-----IKFWNVP  298 (299)
T ss_dssp             EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSC-----EEEEECC
T ss_pred             EEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCE-----EEEEecc
Confidence            999999999999998775443332    3345666655 56788999998887     6667653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-36  Score=246.60  Aligned_cols=251  Identities=18%  Similarity=0.313  Sum_probs=198.8

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      ..+|...|++++|+|+|++|++|+.||.|++|+..+++.+..+.+|...|.++++++++..+++++.++.+++||.++..
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  196 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  196 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccc
Confidence            34688889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eeEEEeeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCC-CceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           86 QLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQG-GESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                      ............++.+.+ ++.++++++.     ++.+.+++......... ........+|...|.+++|+|++++|++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  271 (388)
T d1erja_         197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSL-----DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  271 (388)
T ss_dssp             EEEEEECSSCEEEEEECSTTCCEEEEEET-----TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccCCCCCeEEEEcC-----CCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEE
Confidence            888888777777777776 5667776654     33445554432111000 1122334578899999999999999999


Q ss_pred             eeCCCcEEEEeCCCCcEeeeec---------cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCC
Q 021925          164 AGEDAIVRIWDTETGKLLKESD---------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TER  233 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~  233 (305)
                      ++.||.|++||+++++......         ....|...|++++|+|++++|++|+.||.|++||+++++++.++. |..
T Consensus       272 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~  351 (388)
T d1erja_         272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN  351 (388)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC
Confidence            9999999999998765432211         112578899999999999999999999999999999999999998 888


Q ss_pred             CeeEEE------ecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925          234 PVNAVT------MSPLLDHVCIGEPQTIKFMLLVYLFVL  266 (305)
Q Consensus       234 ~v~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~  266 (305)
                      +|.+++      |+|++++|++|+.|+.     +++|++
T Consensus       352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~-----I~iW~~  385 (388)
T d1erja_         352 SVISVAVANGSSLGPEYNVFATGSGDCK-----ARIWKY  385 (388)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSE-----EEEEEE
T ss_pred             CEEEEEEecCcccCCCCCEEEEEeCCCE-----EEEEee
Confidence            898886      5789999999999987     555554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-35  Score=242.25  Aligned_cols=252  Identities=23%  Similarity=0.350  Sum_probs=198.0

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec------------------CCCcceEEEEEcCCCcEEE
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR------------------GHNGAVWCCDVSRDSMTLI   68 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~------------------~~~~~v~~i~~~~~~~~l~   68 (305)
                      .+|++.|++++|+|||++||+|+ |+.|+|||+.+++.+.++.                  .|...|.+++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            36999999999999999999986 9999999999988776654                  4667799999999999999


Q ss_pred             EEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC
Q 021925           69 TGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (305)
Q Consensus        69 s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (305)
                      +|+.||.|++||..+++.+.... +...+.++.+++++..++.+..     .+.+.+|+...      .........+..
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-----~~~i~~~d~~~------~~~~~~~~~~~~  206 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----DRTVRIWDLRT------GQCSLTLSIEDG  206 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTT------TEEEEEEECSSC
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccc-----ceeeeeeeccc------cccccccccccc
Confidence            99999999999999998888777 7889999999999988887765     44555665432      233444444444


Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeecc----ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 021925          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  223 (305)
                      .+....+.+++++|++++.||.|++||.+++.....+..    ..+|...|++++|+|++++|++++.||.|++||++++
T Consensus       207 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC
Confidence            444444445789999999999999999999887766542    2357889999999999999999999999999999865


Q ss_pred             eEE------------EEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhc
Q 021925          224 ELI------------KTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNL  275 (305)
Q Consensus       224 ~~~------------~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (305)
                      +..            .... +...|.+++|+|++++|++|+.++.     +++|+.........+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-----i~vwd~~~~~~~~~l  346 (388)
T d1erja_         287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-----VLFWDKKSGNPLLML  346 (388)
T ss_dssp             ------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-----EEEEETTTCCEEEEE
T ss_pred             ccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE-----EEEEECCCCcEEEEE
Confidence            432            2222 6778999999999999999999997     666666544444333

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.5e-35  Score=237.31  Aligned_cols=249  Identities=12%  Similarity=0.145  Sum_probs=196.6

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee--EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+++|.++|++++|+|++++|++|+.|++|++||+.+++..  ..+.+|...|.+++|+|+++.|++++.|+.+++|+++
T Consensus        46 ~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~  125 (371)
T d1k8kc_          46 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE  125 (371)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeee
Confidence            47899999999999999999999999999999999877644  4456789999999999999999999999999999988


Q ss_pred             CCCeeEEEe-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC------------CCCCceEEEEecc
Q 021925           83 TGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA------------DQGGESVLILKGP  145 (305)
Q Consensus        83 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~  145 (305)
                      .........     +...+.+++|+|++.++++++.     ++.+.+|+......            ............|
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-----D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (371)
T d1k8kc_         126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS  200 (371)
T ss_dssp             TTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET-----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred             cccccccccccccccccccccccccccccceecccc-----CcEEEEEeeccCccccccccccccccccceeeeeeccCc
Confidence            766443332     5678999999999999988764     45566666543221            1123456677889


Q ss_pred             CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC--c
Q 021925          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART--L  223 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~  223 (305)
                      ...|.+++|+|++++|++++.|+.|++||+.+++.+..+.   .|..+|.+++|+|++++|++|+ |+.+++|....  +
T Consensus       201 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~  276 (371)
T d1k8kc_         201 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA---SETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAG  276 (371)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE---CSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTT
T ss_pred             cCcEEEEEeecccccccccccCCcceEEeeecccceeeee---cccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCc
Confidence            9999999999999999999999999999999999988887   7889999999999998777655 77766665332  1


Q ss_pred             eEEEE--------------------------------------E--eeCCCeeEEEecCCCC----cEEEeeCCcEEEEE
Q 021925          224 ELIKT--------------------------------------Y--VTERPVNAVTMSPLLD----HVCIGEPQTIKFML  259 (305)
Q Consensus       224 ~~~~~--------------------------------------~--~~~~~v~~~~~~~~~~----~l~~~~~~~~~~~~  259 (305)
                      .....                                      .  .|...|+++++.|.+.    .+++++.|+.    
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~----  352 (371)
T d1k8kc_         277 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG----  352 (371)
T ss_dssp             EEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE----
T ss_pred             eEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCe----
Confidence            11000                                      0  0456789999887553    4789999987    


Q ss_pred             Eeehhhhh
Q 021925          260 LVYLFVLF  267 (305)
Q Consensus       260 ~~~~~~~~  267 (305)
                       +++|++.
T Consensus       353 -v~iW~~~  359 (371)
T d1k8kc_         353 -MSIWDVR  359 (371)
T ss_dssp             -EEEEEHH
T ss_pred             -EEEEeCC
Confidence             6677653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=229.28  Aligned_cols=235  Identities=28%  Similarity=0.436  Sum_probs=179.8

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      +.+|+||++.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|.+.|.+++|+|+  +|++++.|+.+++|+..
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~   85 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE   85 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETT
T ss_pred             CEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccc
Confidence            3469999999865 46678999999999999999999999999999999999999999875  89999999999999987


Q ss_pred             CCCeeEEEeeCC-C------------------------------------------------------------------
Q 021925           83 TGAQLFTFNFDS-P------------------------------------------------------------------   95 (305)
Q Consensus        83 ~~~~~~~~~~~~-~------------------------------------------------------------------   95 (305)
                      ............ .                                                                  
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~  165 (342)
T d2ovrb2          86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE  165 (342)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred             cccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecc
Confidence            543322211000 0                                                                  


Q ss_pred             ------------ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925           96 ------------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (305)
Q Consensus        96 ------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  163 (305)
                                  .....+.+++..+++++.     ++.+.+|++      ...+.+..+.+|...+.++++++  ++|++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----dg~i~~~d~------~~~~~~~~~~~~~~~v~~~~~~~--~~l~s  232 (342)
T d2ovrb2         166 TETCLHTLQGHTNRVYSLQFDGIHVVSGSL-----DTSIRVWDV------ETGNCIHTLTGHQSLTSGMELKD--NILVS  232 (342)
T ss_dssp             GTEEEEEECCCSSCEEEEEECSSEEEEEET-----TSCEEEEET------TTCCEEEEECCCCSCEEEEEEET--TEEEE
T ss_pred             cceeeEEEcCcccccccccCCCCEEEEEeC-----CCeEEEeec------ccceeeeEecccccceeEEecCC--CEEEE
Confidence                        001111111222221111     223333433      34567788889999998887764  69999


Q ss_pred             eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe------eCCCeeE
Q 021925          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV------TERPVNA  237 (305)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~v~~  237 (305)
                      ++.||.|++||+...+....+.....|...+.++.+++  +++++|+.||+|++||+++++.++.+.      +...|++
T Consensus       233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~  310 (342)
T d2ovrb2         233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR  310 (342)
T ss_dssp             EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred             EcCCCEEEEEecccccccccccccceeeeceeecccCC--CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEE
Confidence            99999999999999988888876667778888887764  599999999999999999999988875      4567999


Q ss_pred             EEecCCCCcEEEeeCCcE
Q 021925          238 VTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~  255 (305)
                      ++|+|++.++++|+.+|.
T Consensus       311 v~~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         311 IRASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             EEECSSEEEEEEECSSSS
T ss_pred             EEECCCCCEEEEEeCCCC
Confidence            999999999999988873

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=226.27  Aligned_cols=248  Identities=23%  Similarity=0.378  Sum_probs=188.1

Q ss_pred             eEecccccce-EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            4 ILMKGHERPL-TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         4 ~~l~~h~~~v-~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+|+||.+.| +|+++  ++++||||+.||+|+|||+.+++.+.++.+|.++|.+++|+|+ .+|++|+.||+|++|+..
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            4699998885 66555  6789999999999999999999999999999999999999986 489999999999999999


Q ss_pred             CCCeeEEEeeCCC---ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecc-----------------------------
Q 021925           83 TGAQLFTFNFDSP---ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD-----------------------------  130 (305)
Q Consensus        83 ~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  130 (305)
                      ..+..........   .....+.+++..++.++.+     +.+.+|++...                             
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD-----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETT-----SEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             ccccccccccccccccccccccccccceeeeecCC-----CcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            8877766653322   3345566677766665432     11222221100                             


Q ss_pred             ----------------------------cCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEee
Q 021925          131 ----------------------------PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK  182 (305)
Q Consensus       131 ----------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  182 (305)
                                                  ......+......++...+.++.++|+++++++++.|+.|++||++++..+.
T Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  237 (355)
T d1nexb2         158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY  237 (355)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             eeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccc
Confidence                                        0012334455666788889999999999999999999999999999999998


Q ss_pred             eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEE-EecCCCCcEEEeeCCcEEEEEEe
Q 021925          183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV-TMSPLLDHVCIGEPQTIKFMLLV  261 (305)
Q Consensus       183 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~~~~~~~~~~  261 (305)
                      .+.   +|...|.++++++  ++|++++.||.|++||++++.......+ ..+.++ .++++++++++|+ |+.     +
T Consensus       238 ~~~---~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~-d~~-----i  305 (355)
T d1nexb2         238 TLQ---GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHH-TNLSAITTFYVSDNILVSGS-ENQ-----F  305 (355)
T ss_dssp             EEC---CCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEEC-TTCCCCCEEEECSSEEEEEE-TTE-----E
T ss_pred             ccc---ccccccccccccc--ceeeeeecccccccccccccceeccccc-CCceEEEEEcCCCCEEEEEe-CCE-----E
Confidence            887   7999999999875  5899999999999999998877655544 444444 5677777666654 565     6


Q ss_pred             ehhhhhhhhh
Q 021925          262 YLFVLFLDIL  271 (305)
Q Consensus       262 ~~~~~~~~~~  271 (305)
                      ++|++.....
T Consensus       306 ~vwd~~tg~~  315 (355)
T d1nexb2         306 NIYNLRSGKL  315 (355)
T ss_dssp             EEEETTTCCB
T ss_pred             EEEECCCCCE
Confidence            6777654443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-34  Score=229.73  Aligned_cols=248  Identities=12%  Similarity=0.088  Sum_probs=168.6

Q ss_pred             CCceE-ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee---EEecCCCcceEEEEEcCC-CcEEEEEeCCCc
Q 021925            1 MRPIL-MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL---GTYRGHNGAVWCCDVSRD-SMTLITGSADQT   75 (305)
Q Consensus         1 ~~~~~-l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~---~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~   75 (305)
                      ||-+. +++|++.|++|+|+|++++||+|+.||+|+|||++++...   ....+|.++|.+++|+|+ +.+|++|+.||.
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            45554 6799999999999999999999999999999999765432   233369999999999986 468999999999


Q ss_pred             EEEEecCCCCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc--CCCeeE
Q 021925           76 AKLWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--QGRINR  151 (305)
Q Consensus        76 v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~  151 (305)
                      |++|++..+.......  .........+.++...++.++.     ...+.+|++......  .........+  ......
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~  153 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW-----DGLIEVIDPRNYGDG--VIAVKNLNSNNTKVKNKI  153 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEET-----TSEEEEECHHHHTTB--CEEEEESCSSSSSSCCCE
T ss_pred             eeeeeccccccccccccccccccccccccccccccccccc-----ccccceeeccccccc--eeeecccccccccceeee
Confidence            9999999887776665  2233344455566666655543     233444443221110  0011111111  112233


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCCCcE----------------------------------------------ee---
Q 021925          152 AVWGPLNRTIISAGEDAIVRIWDTETGKL----------------------------------------------LK---  182 (305)
Q Consensus       152 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------------------------------------~~---  182 (305)
                      ..+.+.++.+++++.|+.|++||++..+.                                              ..   
T Consensus       154 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~  233 (342)
T d1yfqa_         154 FTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             EEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             eeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc
Confidence            34444445555555555555555443211                                              00   


Q ss_pred             ---------eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCC
Q 021925          183 ---------ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       183 ---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  253 (305)
                               .......|...+++++|+|++++|++|+.||.|++||+++++.+.++....++..++|+|+++.+++|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEEC
T ss_pred             ccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcC
Confidence                     00011245667899999999999999999999999999999999988765667788999999999999877


Q ss_pred             cE
Q 021925          254 TI  255 (305)
Q Consensus       254 ~~  255 (305)
                      +.
T Consensus       314 d~  315 (342)
T d1yfqa_         314 DT  315 (342)
T ss_dssp             TH
T ss_pred             Cc
Confidence            74

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-34  Score=229.44  Aligned_cols=245  Identities=13%  Similarity=0.174  Sum_probs=185.0

Q ss_pred             Eeccc-ccceEEEEEcC--CCCEEEEeeCCCceEEEEcCCCee--------eEEecCCCcceEEEEEcCCCcEEEEEeC-
Q 021925            5 LMKGH-ERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGER--------LGTYRGHNGAVWCCDVSRDSMTLITGSA-   72 (305)
Q Consensus         5 ~l~~h-~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~~~~--------~~~~~~~~~~v~~i~~~~~~~~l~s~~~-   72 (305)
                      .+.+| ...|++++|+|  +|++|++|+.||+|+|||+..++.        ...+..|.++|.+++|++++++|++++. 
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence            46677 46799999998  678999999999999999875432        2234578899999999999999887754 


Q ss_pred             -CCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceE-EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe
Q 021925           73 -DQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI  149 (305)
Q Consensus        73 -dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (305)
                       ++.+++|+.++++.+..+. +...+.+++|+|++..+ ++++.     ++.+.+|+.....   ..........|...|
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-----d~~v~~~d~~~~~---~~~~~~~~~~~~~~v  208 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD-----DGSVVFYQGPPFK---FSASDRTHHKQGSFV  208 (325)
T ss_dssp             SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEET-----TTEEEEEETTTBE---EEEEECSSSCTTCCE
T ss_pred             ccceEEEEeecccccceeeeecccccccccccccccceEEEeec-----ccccccccccccc---cceecccccCCCCcc
Confidence             7789999999999888887 78899999999988754 43433     2344445432110   001111234677889


Q ss_pred             eEEEEcCC-CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc---CCCCEEEEEeCCCeEEEEEcCCceE
Q 021925          150 NRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA---ADGSHFLTGSLDKSAKLWDARTLEL  225 (305)
Q Consensus       150 ~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~  225 (305)
                      .+++|+|+ ++++++++.||.|++||+++++.+..+.   +|..++..+.|+   |++++|++++.|+.|+|||++++++
T Consensus       209 ~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~---~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~  285 (325)
T d1pgua1         209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE---DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC  285 (325)
T ss_dssp             EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC---BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEeeeccccceeccccccccceeeeeecccccccccc---ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCE
Confidence            99999997 5889999999999999999999998887   566666555544   6889999999999999999999999


Q ss_pred             EEEEe-eCCC--eeEEEecCC-CCcEEEeeCCcEEEEEEeehhh
Q 021925          226 IKTYV-TERP--VNAVTMSPL-LDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       226 ~~~~~-~~~~--v~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                      +..+. +...  +..+++.+. +..|++|+.|+.     +++|+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~-----i~vwd  324 (325)
T d1pgua1         286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT-----LNFYE  324 (325)
T ss_dssp             EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC-----EEEEE
T ss_pred             EEEEEecCCcccCeEEEEEECCCCEEEEEECCCE-----EEEEE
Confidence            99887 3332  344444433 246888888887     55554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-32  Score=219.06  Aligned_cols=246  Identities=13%  Similarity=0.149  Sum_probs=192.6

Q ss_pred             ceEEEEEcCCCCEEEEeeCCC-ceEEEEcCCC--eeeEEecCCC-cceEEEEEcC--CCcEEEEEeCCCcEEEEecCCCC
Q 021925           12 PLTYLKYNKDGDLLFSCAKDH-TPTVWFADNG--ERLGTYRGHN-GAVWCCDVSR--DSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg-~v~iw~~~~~--~~~~~~~~~~-~~v~~i~~~~--~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      .+++++|+|+|+.|+.++.+. .|+.|+....  .....+.+|. ..|++++|+|  ++++|++|+.||+|++||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            467899999999999886553 3556664433  3466777774 6799999998  66899999999999999987654


Q ss_pred             eeEEE--------e-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925           86 QLFTF--------N-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        86 ~~~~~--------~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      .....        . +..++.+++|++++..+++++.+.   ......+..      ..++.+..+.+|...|.+++|+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~---~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~~~  169 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR---DNFGVFISW------DSGNSLGEVSGHSQRINACHLKQ  169 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS---SCSEEEEET------TTCCEEEECCSCSSCEEEEEECS
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccc---cceEEEEee------cccccceeeeecccccccccccc
Confidence            32221        1 567899999999999888765421   122333333      23567788889999999999999


Q ss_pred             CCCE-EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceEEEEEe-eCC
Q 021925          157 LNRT-IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYV-TER  233 (305)
Q Consensus       157 ~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~  233 (305)
                      ++++ +++++.|+.+++||....+..........|...|++++|+|+ +.+|++++.||.|++||+++++.+..+. |..
T Consensus       170 ~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~  249 (325)
T d1pgua1         170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE  249 (325)
T ss_dssp             SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred             cccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccc
Confidence            9875 678999999999999988887777766678899999999996 6889999999999999999999999887 666


Q ss_pred             CeeEEEec---CCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925          234 PVNAVTMS---PLLDHVCIGEPQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       234 ~v~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
                      ++.++.|+   |++++|++++.|+.     +++|++.....
T Consensus       250 ~v~~~~~s~~~~dg~~l~s~s~D~~-----i~iwd~~~~~~  285 (325)
T d1pgua1         250 PVQGGIFALSWLDSQKFATVGADAT-----IRVWDVTTSKC  285 (325)
T ss_dssp             CCCSCEEEEEESSSSEEEEEETTSE-----EEEEETTTTEE
T ss_pred             ccccceeeeeccCCCEEEEEeCCCe-----EEEEECCCCCE
Confidence            67666665   78999999999997     66676654443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-31  Score=204.76  Aligned_cols=236  Identities=23%  Similarity=0.377  Sum_probs=176.9

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~   85 (305)
                      ..+|...|+|++|  ||++||||+.||+|+|||+++++++.++.+|.++|.+++|  ++++|++|+.||.|++|++..+.
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence            5678889998764  7899999999999999999999999999999999999987  56799999999999999999887


Q ss_pred             eeEEEeeCCCceEEEEecCCceEEEeCCcceee-------------------------------------eeeEEEEEee
Q 021925           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-------------------------------------NSAIHVKRIA  128 (305)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~  128 (305)
                      ...................+..+.........+                                     +..+..++. 
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~-  165 (293)
T d1p22a2          87 MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNT-  165 (293)
T ss_dssp             EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET-
T ss_pred             ccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecC-
Confidence            766555333333332222232222222211111                                     111222222 


Q ss_pred             cccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEE
Q 021925          129 RDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT  208 (305)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  208 (305)
                           ...+.+..+.++...+..+.++  +.++++++.||.|++||+++.+.+....   ++...+..  +++++.+|++
T Consensus       166 -----~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~--~~~~~~~l~s  233 (293)
T d1p22a2         166 -----STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRC--IRFDNKRIVS  233 (293)
T ss_dssp             -----TTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEE--EECCSSEEEE
T ss_pred             -----CCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeec---ccceeeee--ccccceEEEE
Confidence                 3356677788888888877775  5689999999999999999999888876   67777765  4567789999


Q ss_pred             EeCCCeEEEEEcCCc---------eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925          209 GSLDKSAKLWDARTL---------ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       209 ~~~dg~i~iwd~~~~---------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                      ++.||.|++||+.+.         .++..+. |..+|++++|+  +++|++|+.|+.     +++|+
T Consensus       234 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~-----i~iWD  293 (293)
T d1p22a2         234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDT-----ILIWD  293 (293)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSE-----EEEEC
T ss_pred             EcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCE-----EEEeC
Confidence            999999999997642         3556665 88899999995  568999999987     55553

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-32  Score=213.31  Aligned_cols=229  Identities=15%  Similarity=0.188  Sum_probs=167.1

Q ss_pred             ce-EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925            3 PI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (305)
Q Consensus         3 ~~-~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~   81 (305)
                      |+ +|+||.++|++++|+|    |+||+.||+|++||+.++     ..+|...|.++++++++ .+++++.|+++++|++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTE
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccccc
Confidence            44 6899999999999987    999999999999997653     35799999999998765 6789999999999986


Q ss_pred             CCCCeeEEEeeCCCceEEE--------------------------------------EecCCceEEEeCCcceeeeeeEE
Q 021925           82 ETGAQLFTFNFDSPARSVD--------------------------------------FAVGDKLAVITTDPFMELNSAIH  123 (305)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  123 (305)
                      ...+      ....+..+.                                      +++++..++++....    ..+.
T Consensus        75 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~v~  144 (287)
T d1pgua2          75 TKHE------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEG----NTIQ  144 (287)
T ss_dssp             EEEE------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTT----SCEE
T ss_pred             cccc------cccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeecccc----ceee
Confidence            5321      122222233                                      333333333332210    1122


Q ss_pred             EEEeecccCCCCCceEE-EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC
Q 021925          124 VKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD  202 (305)
Q Consensus       124 ~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  202 (305)
                      +|++..      ..... ....|...+++++|+|++++|++|+.||.|++||+.+++......  ..|...|++++|+|+
T Consensus       145 ~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~~h~~~v~~~~~~p~  216 (287)
T d1pgua2         145 VFKLSD------LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPA  216 (287)
T ss_dssp             EEETTE------EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCC
T ss_pred             eeeccc------cceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccc--cccccccceeeeccc
Confidence            222211      01111 123467889999999999999999999999999999887655432  278999999999874


Q ss_pred             ----------CCEEEEEeCCCeEEEEEcCC-ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925          203 ----------GSHFLTGSLDKSAKLWDART-LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFV  265 (305)
Q Consensus       203 ----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  265 (305)
                                +.+|++|+.|++|++||+++ .+.+..+. |...|++++|+|++ .+++++.|+.     +++|+
T Consensus       217 ~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~-----v~iW~  285 (287)
T d1pgua2         217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADAC-----IKRWN  285 (287)
T ss_dssp             C------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSC-----EEEEE
T ss_pred             ccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCe-----EEEEE
Confidence                      46899999999999999977 45555554 88899999999987 5788888887     55554

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-31  Score=208.72  Aligned_cols=201  Identities=22%  Similarity=0.416  Sum_probs=177.5

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~   84 (305)
                      .+.+|...+.++.++|+++.+++++.|+.+++||+++++.+..+.+|...+.+++|+|++++|++++.|+.|++|++.++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~  175 (317)
T d1vyhc1          96 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK  175 (317)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEe-eCCCceEEEEecCCce--------------------EEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe
Q 021925           85 AQLFTFN-FDSPARSVDFAVGDKL--------------------AVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (305)
Q Consensus        85 ~~~~~~~-~~~~v~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (305)
                      +....+. +...+.++.++|+...                    +++++.     ++.+.+|+.      ..++.+..+.
T Consensus       176 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~i~~~~~------~~~~~~~~~~  244 (317)
T d1vyhc1         176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-----DKTIKMWDV------STGMCLMTLV  244 (317)
T ss_dssp             CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET-----TSEEEEEET------TTTEEEEEEE
T ss_pred             eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC-----CCEEEEEEC------CCCcEEEEEe
Confidence            9888776 6777888888876543                    222221     234455554      3456788899


Q ss_pred             ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925          144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (305)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  219 (305)
                      +|...|.+++++|++++|++|+.||.|++||+++++++..+.   +|...|++++|+|++++|++|+.||+|++||
T Consensus       245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE---CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999999999999999999999998887   7999999999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.5e-31  Score=208.55  Aligned_cols=217  Identities=19%  Similarity=0.251  Sum_probs=177.6

Q ss_pred             CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeee
Q 021925           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNS  120 (305)
Q Consensus        42 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  120 (305)
                      .+..+++++|.++|++++|+|++++|+||+.||+|+|||+.+++.+..+. +...|.+++|+|++.++++++....    
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~----  120 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI----  120 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCC----
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccce----
Confidence            35667899999999999999999999999999999999999999998887 7889999999999999988765321    


Q ss_pred             eEEEEEeeccc---------------------------------------CCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925          121 AIHVKRIARDP---------------------------------------ADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus       121 ~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                       +..+......                                       .............+...+....+.+.+.++
T Consensus       121 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         121 -CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             -EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             -eecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence             1111110000                                       011122334445566778888999999999


Q ss_pred             EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEE
Q 021925          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAV  238 (305)
Q Consensus       162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~  238 (305)
                      ++++.|+.|++||+++++++..+.   +|...|++++|+|++++|++|+.||.|++||++..+.+..+.   +..++.++
T Consensus       200 ~~~~~d~~v~i~d~~~~~~~~~~~---~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~  276 (340)
T d1tbga_         200 VSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV  276 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             EEeecCceEEEEECCCCcEEEEEe---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE
Confidence            999999999999999999998887   799999999999999999999999999999999998887775   56679999


Q ss_pred             EecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925          239 TMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL  271 (305)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
                      +|+|++++|++|+.++.     +++|+......
T Consensus       277 ~~s~~~~~l~~g~~dg~-----i~iwd~~~~~~  304 (340)
T d1tbga_         277 SFSKSGRLLLAGYDDFN-----CNVWDALKADR  304 (340)
T ss_dssp             EECSSSCEEEEEETTSC-----EEEEETTTCCE
T ss_pred             EECCCCCEEEEEECCCE-----EEEEECCCCcE
Confidence            99999999999999987     55666544333

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-31  Score=216.43  Aligned_cols=260  Identities=12%  Similarity=0.067  Sum_probs=184.1

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee------eEEecCCCcceEEEEE------cC-CCcEEEEEe
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER------LGTYRGHNGAVWCCDV------SR-DSMTLITGS   71 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~------~~~~~~~~~~v~~i~~------~~-~~~~l~s~~   71 (305)
                      ..++|.+.|.++++++  ++++|++.|++|+|||..+.+.      ......|...+..+..      .+ ++..+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            4689999999999864  6999999999999999765431      2233345544433322      22 335778999


Q ss_pred             CCCcEEEEecCCCCeeEEE---e--------eCCCceEEEEecCC-----ceEEEeCCcceeeeeeEEEEEeecccCC--
Q 021925           72 ADQTAKLWNVETGAQLFTF---N--------FDSPARSVDFAVGD-----KLAVITTDPFMELNSAIHVKRIARDPAD--  133 (305)
Q Consensus        72 ~dg~v~vwd~~~~~~~~~~---~--------~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  133 (305)
                      .||.|++|++.........   .        .+..+..+++.++.     ..++.++.     ++.+.+|++......  
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV-----KGTTYIWKFHPFADESN  161 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET-----TSCEEEEEEESSSSHHH
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcC-----CCcEEEEEeecCCcccc
Confidence            9999999997644321111   1        23345667776653     34444432     455666766432210  


Q ss_pred             ---CCCce-------EEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeecc---ccCCccceEEEEEc
Q 021925          134 ---QGGES-------VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK---ETGHKKTITSLAKA  200 (305)
Q Consensus       134 ---~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~~  200 (305)
                         .....       ......+...+.+++|+|++ +|++|+.||.|++||+++++++..+..   ..+|..+|++++|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence               00011       11112345568999999997 899999999999999999988776542   34688999999999


Q ss_pred             CCCCEEEEEeCCC---eEEEEEcCCceEEEEEe--------------eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925          201 ADGSHFLTGSLDK---SAKLWDARTLELIKTYV--------------TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL  263 (305)
Q Consensus       201 ~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (305)
                      |+|++|++|+.|+   .|++||+++++++..+.              |...|++++|+|++++|++|+.|+.     +++
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~-----v~v  315 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-----LRF  315 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-----EEE
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCE-----EEE
Confidence            9999999999987   49999999998887763              6778999999999999999999998     788


Q ss_pred             hhhhhhhhhhhccc
Q 021925          264 FVLFLDILFYNLYC  277 (305)
Q Consensus       264 ~~~~~~~~~~~~~~  277 (305)
                      |+.........+..
T Consensus       316 Wd~~~g~~~~~l~g  329 (393)
T d1sq9a_         316 WDVKTKERITTLNM  329 (393)
T ss_dssp             EETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEECC
Confidence            87766655555443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.8e-31  Score=206.21  Aligned_cols=219  Identities=15%  Similarity=0.150  Sum_probs=166.7

Q ss_pred             CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeee
Q 021925           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELN  119 (305)
Q Consensus        42 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~  119 (305)
                      |+..+.+.+|.++|++++|+|++++|++|+.||+|++||+++++....+.  +...|.+++|+|++.+++++.++.....
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence            56788999999999999999999999999999999999999999887775  6788999999999998888776433222


Q ss_pred             eeE----------------EEEEeecccCCC-----CCceEE-------EEeccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925          120 SAI----------------HVKRIARDPADQ-----GGESVL-------ILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (305)
Q Consensus       120 ~~~----------------~~~~~~~~~~~~-----~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  171 (305)
                      ...                ....+.......     ....+.       ........+.+++++|+++++++|+.||.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  161 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH  161 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            100                000000000000     000001       1112344678899999999999999999999


Q ss_pred             EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe----eCCCeeEEEecCCCCcE
Q 021925          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLDHV  247 (305)
Q Consensus       172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l  247 (305)
                      +||+++++......  ..|...|++++|+|++++|++++.|+.|++||+.++.......    |..+|++++|+|++++|
T Consensus       162 ~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  239 (299)
T d1nr0a2         162 VYKLSGASVSEVKT--IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL  239 (299)
T ss_dssp             EEEEETTEEEEEEE--EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence            99998776543322  1588899999999999999999999999999998876654432    67899999999999999


Q ss_pred             EEeeCCcEEEEEEeehhhhh
Q 021925          248 CIGEPQTIKFMLLVYLFVLF  267 (305)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~  267 (305)
                      ++|+.|+.     +++|++.
T Consensus       240 ~sgs~dg~-----i~iwd~~  254 (299)
T d1nr0a2         240 ATGSLDNS-----VIVWNMN  254 (299)
T ss_dssp             EEEETTSC-----EEEEETT
T ss_pred             EEEcCCCE-----EEEEECC
Confidence            99999987     5556543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6e-29  Score=198.87  Aligned_cols=230  Identities=18%  Similarity=0.284  Sum_probs=163.4

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCC--cceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN--GAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~   82 (305)
                      .+.+|.++|++++|+|+ .+|++|+.||.|++|+....+.......+.  .......+.++++.+++++.|+.|++||++
T Consensus        48 ~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~  126 (355)
T d1nexb2          48 QLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP  126 (355)
T ss_dssp             EEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECC
T ss_pred             EEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEcc
Confidence            57899999999999986 589999999999999999888766555433  344556667788888888888888888876


Q ss_pred             CCCeeEEE---------------------------------------------------------------e-eCCCceE
Q 021925           83 TGAQLFTF---------------------------------------------------------------N-FDSPARS   98 (305)
Q Consensus        83 ~~~~~~~~---------------------------------------------------------------~-~~~~v~~   98 (305)
                      +.......                                                               . ....+.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  206 (355)
T d1nexb2         127 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS  206 (355)
T ss_dssp             C-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccccc
Confidence            54322111                                                               1 1222334


Q ss_pred             EEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 021925           99 VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG  178 (305)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  178 (305)
                      +.+++++..++.+..     ++.+.+++.      .....+..+.+|...|.++++++  ++|++++.||.|++||+++.
T Consensus       207 ~~~~~~~~~~~~~~~-----d~~i~i~d~------~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         207 TIYDHERKRCISASM-----DTTIRIWDL------ENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             EEEETTTTEEEEEET-----TSCEEEEET------TTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTC
T ss_pred             ccccccceeeecccc-----cceEEeeec------ccccccccccccccccccccccc--ceeeeeeccccccccccccc
Confidence            444444444444332     233344443      34567788899999999999874  68999999999999999987


Q ss_pred             cEeeeeccccCCccceEEE-EEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE-e-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          179 KLLKESDKETGHKKTITSL-AKAADGSHFLTGSLDKSAKLWDARTLELIKTY-V-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ......     |...+.++ .++++++++++| .||.|++||+++++++... . |..+|.+++|+|+ ..+++++.|+.
T Consensus       274 ~~~~~~-----~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~  346 (355)
T d1nexb2         274 SRKFSY-----HHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQ  346 (355)
T ss_dssp             CEEEEE-----ECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSC
T ss_pred             ceeccc-----ccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCc
Confidence            655443     34444444 566777766665 5999999999999988643 3 7788999999987 46777777775

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.3e-30  Score=208.06  Aligned_cols=197  Identities=17%  Similarity=0.221  Sum_probs=159.6

Q ss_pred             ccccceEEEEEcCC-----CCEEEEeeCCCceEEEEcCCCe------------------eeEEecCCCcceEEEEEcCCC
Q 021925            8 GHERPLTYLKYNKD-----GDLLFSCAKDHTPTVWFADNGE------------------RLGTYRGHNGAVWCCDVSRDS   64 (305)
Q Consensus         8 ~h~~~v~~~~~~~~-----~~~l~s~~~dg~v~iw~~~~~~------------------~~~~~~~~~~~v~~i~~~~~~   64 (305)
                      .+...+..++|.++     +.++++++.||.+++|++....                  .......+...+.+++|+|++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  196 (393)
T d1sq9a_         117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG  196 (393)
T ss_dssp             GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred             cCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC
Confidence            35566778888775     4688999999999999975321                  111122455678999999998


Q ss_pred             cEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec
Q 021925           65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (305)
Q Consensus        65 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (305)
                       +|++|+.||+|++||+++++.+..+.                                              ....+.+
T Consensus       197 -~lasgs~Dg~i~iwd~~~~~~~~~~~----------------------------------------------~~~~l~~  229 (393)
T d1sq9a_         197 -LIATGFNNGTVQISELSTLRPLYNFE----------------------------------------------SQHSMIN  229 (393)
T ss_dssp             -EEEEECTTSEEEEEETTTTEEEEEEE----------------------------------------------CCC---C
T ss_pred             -EEEEEeCCCcEEEEeecccccccccc----------------------------------------------ccccccc
Confidence             89999999999999999887766543                                              1223467


Q ss_pred             cCCCeeEEEEcCCCCEEEEeeCCC---cEEEEeCCCCcEeeeecc----------ccCCccceEEEEEcCCCCEEEEEeC
Q 021925          145 PQGRINRAVWGPLNRTIISAGEDA---IVRIWDTETGKLLKESDK----------ETGHKKTITSLAKAADGSHFLTGSL  211 (305)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~  211 (305)
                      |...|.+++|+|++++|++|+.|+   .|++||+++++.+..+..          ..+|...|++++|+|++++|++++.
T Consensus       230 h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~  309 (393)
T d1sq9a_         230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW  309 (393)
T ss_dssp             CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             ccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC
Confidence            999999999999999999999887   499999999988877642          2379999999999999999999999


Q ss_pred             CCeEEEEEcCCceEEEEEe-eCCCee----EEEecCCCCcEEEee
Q 021925          212 DKSAKLWDARTLELIKTYV-TERPVN----AVTMSPLLDHVCIGE  251 (305)
Q Consensus       212 dg~i~iwd~~~~~~~~~~~-~~~~v~----~~~~~~~~~~l~~~~  251 (305)
                      |++|++||+++++++.++. |...|.    .++|+|++..+++++
T Consensus       310 D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         310 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            9999999999999999998 766664    588999999887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.7e-27  Score=191.15  Aligned_cols=246  Identities=10%  Similarity=0.078  Sum_probs=180.2

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCC--ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~   83 (305)
                      -.+|...|++++|+|||+.|++++.+.  .|++||.++++. ..+..|...|.+++|+|++++|++++.++.+++|++.+
T Consensus        38 ~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~  116 (360)
T d1k32a3          38 KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET  116 (360)
T ss_dssp             ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccccc
Confidence            347999999999999999998876553  799999987765 46677999999999999999999999999999999999


Q ss_pred             CCeeEEEe-eCCCceEEEEecCCceEEEeCCcce-----eeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFM-----ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (305)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (305)
                      ++....+. +...+.+++|+|+++.++.+.....     .....+.+++..       ......+..+...+..++|+|+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~-------~~~~~~~~~~~~~~~~~~~spd  189 (360)
T d1k32a3         117 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME-------GRKIFAATTENSHDYAPAFDAD  189 (360)
T ss_dssp             CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT-------TTEEEECSCSSSBEEEEEECTT
T ss_pred             cceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccc-------cCceeeecccccccccccccCC
Confidence            99887777 6678899999999999887543221     112223334332       2334455667778899999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcEe-------eeecc---------------------------------ccCCccceEEE
Q 021925          158 NRTIISAGEDAIVRIWDTETGKLL-------KESDK---------------------------------ETGHKKTITSL  197 (305)
Q Consensus       158 ~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~---------------------------------~~~~~~~v~~~  197 (305)
                      |++|++++.++.+.+||.......       ..+..                                 ..........+
T Consensus       190 g~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (360)
T d1k32a3         190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI  269 (360)
T ss_dssp             SCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEE
T ss_pred             CCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEe
Confidence            999999999999999997643221       10000                                 00011122333


Q ss_pred             EEcCCC-------------CEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehh
Q 021925          198 AKAADG-------------SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLF  264 (305)
Q Consensus       198 ~~~~~~-------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  264 (305)
                      ...+++             .++++++.++.+++||+.+++...   +...|.+++|+|||++|++++.|+.     +++|
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~v~~~~~SpDG~~l~~~~~Dg~-----i~v~  341 (360)
T d1k32a3         270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE---VKNNLTDLRLSADRKTVMVRKDDGK-----IYTF  341 (360)
T ss_dssp             EECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE---EEEEEEEEEECTTSCEEEEEETTSC-----EEEE
T ss_pred             eecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE---ecCCcCEEEECCCCCEEEEEECCCe-----EEEE
Confidence            333322             234556678899999999876533   3345899999999999999999997     5555


Q ss_pred             hhh
Q 021925          265 VLF  267 (305)
Q Consensus       265 ~~~  267 (305)
                      +..
T Consensus       342 d~~  344 (360)
T d1k32a3         342 PLE  344 (360)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.9e-25  Score=176.28  Aligned_cols=216  Identities=19%  Similarity=0.315  Sum_probs=154.5

Q ss_pred             EEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCC-c
Q 021925           37 WFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTD-P  114 (305)
Q Consensus        37 w~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~  114 (305)
                      |+..+.++.+.+++|.+.|.+ +++++|++|+||+.||+|+|||+++++++..+. +...|.+++++++  .+++++. .
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence            555667788899999999865 366678999999999999999999999998887 7889999999875  4444432 1


Q ss_pred             ceeee----------------------------------eeEEEEEeecccC----------------------------
Q 021925          115 FMELN----------------------------------SAIHVKRIARDPA----------------------------  132 (305)
Q Consensus       115 ~~~~~----------------------------------~~~~~~~~~~~~~----------------------------  132 (305)
                      .....                                  ..+..++......                            
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            11110                                  0111111100000                            


Q ss_pred             ------CCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEE
Q 021925          133 ------DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF  206 (305)
Q Consensus       133 ------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  206 (305)
                            .........+.+|...+.  .+++++.++++++.||.|++||++.++++..+.   +|...+.++++++  ++|
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~--~~l  230 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT---GHQSLTSGMELKD--NIL  230 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEETTSCEEEEETTTCCEEEEEC---CCCSCEEEEEEET--TEE
T ss_pred             eEEEeecccceeeEEEcCcccccc--cccCCCCEEEEEeCCCeEEEeecccceeeeEec---ccccceeEEecCC--CEE
Confidence                  011223344445554444  455578899999999999999999999988887   7888898887765  599


Q ss_pred             EEEeCCCeEEEEEcCCceEEEEEe----eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925          207 LTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLD  269 (305)
Q Consensus       207 ~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  269 (305)
                      ++++.||.|++||+...+....+.    +...+.++++  +++++++|+.|+.     +++|++...
T Consensus       231 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~-----i~iwd~~tg  290 (342)
T d2ovrb2         231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGT-----VKLWDLKTG  290 (342)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSE-----EEEEETTTC
T ss_pred             EEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCE-----EEEEECCCC
Confidence            999999999999999988887776    3445555555  4568999999987     666665543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=6.7e-26  Score=181.75  Aligned_cols=187  Identities=11%  Similarity=0.055  Sum_probs=157.3

Q ss_pred             EEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC--cEEEEecCCCCeeEEE
Q 021925           14 TYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTF   90 (305)
Q Consensus        14 ~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~   90 (305)
                      ..-.||| ||+++|+++ +|.|++||.++++.++ + +|...|.+++|+|||+.|++++.+.  .|++||.++++..   
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~---   79 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE---   79 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE---
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE---
Confidence            3467999 999999887 5799999998877654 3 5999999999999999998876653  7999999876532   


Q ss_pred             eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcE
Q 021925           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (305)
Q Consensus        91 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  170 (305)
                                                                        .+..|...+.+++|+|++++|++++.++.+
T Consensus        80 --------------------------------------------------~~~~~~~~v~~~~~spdg~~l~~~~~~~~~  109 (360)
T d1k32a3          80 --------------------------------------------------KFEENLGNVFAMGVDRNGKFAVVANDRFEI  109 (360)
T ss_dssp             --------------------------------------------------ECCCCCCSEEEEEECTTSSEEEEEETTSEE
T ss_pred             --------------------------------------------------EeeCCCceEEeeeecccccccceecccccc
Confidence                                                              234577889999999999999999999999


Q ss_pred             EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe----------CCCeEEEEEcCCceEEEEEeeCCCeeEEEe
Q 021925          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS----------LDKSAKLWDARTLELIKTYVTERPVNAVTM  240 (305)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~  240 (305)
                      ++|++.+++....+.   .+...+.+++|+|+|++|+.++          .++.+++||+.+++......+...+..++|
T Consensus       110 ~~~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~  186 (360)
T d1k32a3         110 MTVDLETGKPTVIER---SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF  186 (360)
T ss_dssp             EEEETTTCCEEEEEE---CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEE
T ss_pred             ccccccccceeeeee---cccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccc
Confidence            999999998887776   6788899999999999998654          355799999999988777778888999999


Q ss_pred             cCCCCcEEEeeCCcEEEEE
Q 021925          241 SPLLDHVCIGEPQTIKFML  259 (305)
Q Consensus       241 ~~~~~~l~~~~~~~~~~~~  259 (305)
                      +|+|+.|++++.++....+
T Consensus       187 spdg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         187 DADSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             CTTSCEEEEEESCCCCCEE
T ss_pred             cCCCCEEEEEeCCCceEcc
Confidence            9999999999888764333

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=3.6e-25  Score=181.89  Aligned_cols=235  Identities=11%  Similarity=0.057  Sum_probs=161.3

Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE--Eec---CCCcceEEEEEcCCCcEEEEE-eCCCcEEE
Q 021925            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG--TYR---GHNGAVWCCDVSRDSMTLITG-SADQTAKL   78 (305)
Q Consensus         5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~--~~~---~~~~~v~~i~~~~~~~~l~s~-~~dg~v~v   78 (305)
                      .+..| ..+..++|||||+++++++.|++|++||+.+++...  .+.   +|.+.+.+++|+|||++++++ ..++.+.+
T Consensus        57 ~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i  135 (426)
T d1hzua2          57 VIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI  135 (426)
T ss_dssp             EEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred             EEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEE
Confidence            35555 458999999999999999999999999999887433  332   456667788889999987554 57899999


Q ss_pred             EecCCCCeeEEEe-eCCCceEE-----------EEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC
Q 021925           79 WNVETGAQLFTFN-FDSPARSV-----------DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (305)
Q Consensus        79 wd~~~~~~~~~~~-~~~~v~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (305)
                      ||..+++...... +...+...           ..++++..+.....+.      ..+......   ..........++.
T Consensus       136 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~------~~i~~~~~~---~~~~~~~~~~~~~  206 (426)
T d1hzua2         136 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET------GKVLLVNYK---DIDNLTVTSIGAA  206 (426)
T ss_dssp             EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT------TEEEEEECS---SSSSCEEEEEECC
T ss_pred             EcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC------CeEEEEEec---cccceeeEEeccC
Confidence            9999998877765 23333333           4444444443332211      111111110   1112233344667


Q ss_pred             CCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCCcEeeeec----------------------------------------
Q 021925          147 GRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESD----------------------------------------  185 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~----------------------------------------  185 (305)
                      ..+..+.++|++++++++.. +..+.++|..+++.+....                                        
T Consensus       207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~  286 (426)
T d1hzua2         207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK  286 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred             CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence            77888999999988777664 5567788877665443221                                        


Q ss_pred             -----------cccCCccceEEEEEcCCCCEEEE-------EeCCCeEEEEEcCCceEEEEEe----------eCCCeeE
Q 021925          186 -----------KETGHKKTITSLAKAADGSHFLT-------GSLDKSAKLWDARTLELIKTYV----------TERPVNA  237 (305)
Q Consensus       186 -----------~~~~~~~~v~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~----------~~~~v~~  237 (305)
                                 ...+|...+..++|+|++++|++       ++.|++|++||+++++...++.          +...+.+
T Consensus       287 ~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~  366 (426)
T d1hzua2         287 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ  366 (426)
T ss_dssp             TCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEE
T ss_pred             ccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEE
Confidence                       01256677899999999999994       5568899999999987765542          3556889


Q ss_pred             EEecCCCCcEEE
Q 021925          238 VTMSPLLDHVCI  249 (305)
Q Consensus       238 ~~~~~~~~~l~~  249 (305)
                      ++|||||+.+++
T Consensus       367 ~~fSpDGk~i~v  378 (426)
T d1hzua2         367 PEYNKRGDEVWF  378 (426)
T ss_dssp             EEECSSSSEEEE
T ss_pred             EEECCCCCEEEE
Confidence            999999997754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=5.3e-24  Score=168.94  Aligned_cols=230  Identities=12%  Similarity=0.033  Sum_probs=170.1

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecCC--CcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeEEEeeC------
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFD------   93 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~------   93 (305)
                      +++++++.|++|++||+++++.+.++..+  ...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+...      
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            58999999999999999999999988653  4567899999999987 56677999999999999998887733      


Q ss_pred             CCceEEEEecCCceEEEeCCcceeeee-------eEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925           94 SPARSVDFAVGDKLAVITTDPFMELNS-------AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (305)
Q Consensus        94 ~~v~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  166 (305)
                      ..+..++++|+++.++.+.........       ....++.      ...+....+. +...+..++++|+++++++++.
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~------~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~  154 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA------ETLSRRKAFE-APRQITMLAWARDGSKLYGLGR  154 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET------TTTEEEEEEE-CCSSCCCEEECTTSSCEEEESS
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccc------cCCeEEEecc-ccCCceEEEEcCCCCEEEEEcC
Confidence            345689999999998877543221111       1112221      2233333333 4456888999999999998874


Q ss_pred             CCcEEEEeCCCCcEeeeecc------------------------------------------------------------
Q 021925          167 DAIVRIWDTETGKLLKESDK------------------------------------------------------------  186 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~------------------------------------------------------------  186 (305)
                        .+.+||..+++....+..                                                            
T Consensus       155 --~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (337)
T d1pbyb_         155 --DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             --SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             --CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEE
Confidence              467899887765544321                                                            


Q ss_pred             ---ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925          187 ---ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL  263 (305)
Q Consensus       187 ---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (305)
                         ...+...+..+.++|++.+++.+  ++.|++||+++++.+..+.+...+.+++|+|||++|++++.++.     +.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~-----i~v  305 (337)
T d1pbyb_         233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD-----LAA  305 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSE-----EEE
T ss_pred             EEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCc-----EEE
Confidence               00123345566777777776655  58899999999999999998888999999999999999988886     556


Q ss_pred             hhhhh
Q 021925          264 FVLFL  268 (305)
Q Consensus       264 ~~~~~  268 (305)
                      |+...
T Consensus       306 ~D~~t  310 (337)
T d1pbyb_         306 YDAET  310 (337)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            65543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=1.3e-22  Score=158.41  Aligned_cols=241  Identities=11%  Similarity=0.067  Sum_probs=184.1

Q ss_pred             cceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCCCCeeE
Q 021925           11 RPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~   88 (305)
                      ..+..++|+|||++|+ +++.++.|++||+.+++.+.++..+.. +..+.|++++..++ ++..++.+.+|+..+++...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccceeee
Confidence            4578999999999875 666789999999999999999987654 68999999987655 55667899999999999999


Q ss_pred             EEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC-
Q 021925           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED-  167 (305)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  167 (305)
                      .+.......++.++|++..++......    .....++.      ........+ .+...+..+.++|+++.+++++.+ 
T Consensus       111 ~~~~~~~~~~~~~~~dg~~~~~~~~~~----~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  179 (301)
T d1l0qa2         111 TVKTGKSPLGLALSPDGKKLYVTNNGD----KTVSVINT------VTKAVINTV-SVGRSPKGIAVTPDGTKVYVANFDS  179 (301)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEETTT----TEEEEEET------TTTEEEEEE-ECCSSEEEEEECTTSSEEEEEETTT
T ss_pred             eccccccceEEEeecCCCeeeeeeccc----cceeeeec------cccceeeec-ccCCCceEEEeeccccceeeecccc
Confidence            999888899999999999887665321    12222222      122333333 344567889999999988877765 


Q ss_pred             CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC---CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCC
Q 021925          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTYVTERPVNAVTMSPLL  244 (305)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  244 (305)
                      +.+.+|+....+......    ....+..++++++++.++.++.   ++.|++||+.+++.+..+.....+.+++|+|||
T Consensus       180 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg  255 (301)
T d1l0qa2         180 MSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDG  255 (301)
T ss_dssp             TEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTS
T ss_pred             cccccccccceeeeeccc----ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCC
Confidence            677788887777766664    4566788999999998876543   468999999999999998877789999999999


Q ss_pred             CcEEE-eeCCcEEEEEEeehhhhhhhhhh
Q 021925          245 DHVCI-GEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       245 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      ++|++ ++.++.     +.+|+.......
T Consensus       256 ~~l~va~~~~~~-----i~v~D~~t~~~~  279 (301)
T d1l0qa2         256 KKVYVALSFCNT-----VSVIDTATNTIT  279 (301)
T ss_dssp             SEEEEEETTTTE-----EEEEETTTTEEE
T ss_pred             CEEEEEECCCCe-----EEEEECCCCeEE
Confidence            98754 455554     666666544333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=2e-22  Score=159.70  Aligned_cols=219  Identities=15%  Similarity=0.099  Sum_probs=166.4

Q ss_pred             ecccccceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCc-----ceEEEEEcCCCcEEEEEe--------
Q 021925            6 MKGHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNG-----AVWCCDVSRDSMTLITGS--------   71 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~l~s~~--------   71 (305)
                      +..+...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+..     .+..++|+|+++++++++        
T Consensus        29 ~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~  108 (337)
T d1pbyb_          29 IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT  108 (337)
T ss_dssp             CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred             CCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceee
Confidence            344556788999999999874 667899999999999999888876543     345789999999988775        


Q ss_pred             ----CCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeee--EEEEEeecccC-------------
Q 021925           72 ----ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA--IHVKRIARDPA-------------  132 (305)
Q Consensus        72 ----~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------------  132 (305)
                          .++.+.+||..+++....+.....+..++++|+++.++++......++..  ...........             
T Consensus       109 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (337)
T d1pbyb_         109 HFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV  188 (337)
T ss_dssp             CEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred             eccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCccee
Confidence                35789999999999999999888899999999999998876533221110  00000000000             


Q ss_pred             -------------------------------------CCCCc-eEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q 021925          133 -------------------------------------DQGGE-SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD  174 (305)
Q Consensus       133 -------------------------------------~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  174 (305)
                                                           ...+. .......+...+..+.++|++.+++.+  ++.|++||
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d  266 (337)
T d1pbyb_         189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFD  266 (337)
T ss_dssp             CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEE
T ss_pred             eccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEE
Confidence                                                 00011 112334455667778888988888766  48999999


Q ss_pred             CCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      +.+++.+..+.    +...+.+++|+|||++|++++.|++|++||.++++.+.++.
T Consensus       267 ~~~~~~~~~~~----~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         267 LEKNASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             TTTTEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             CCCCcEEEEEc----CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            99999998886    56678999999999999999999999999999999999887

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1.1e-22  Score=161.79  Aligned_cols=240  Identities=12%  Similarity=0.005  Sum_probs=160.4

Q ss_pred             EEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeEEEeeC
Q 021925           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFD   93 (305)
Q Consensus        16 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~   93 (305)
                      +++++++++|++++.+++|.+||+.+++.+.++. .|...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4789999999999999999999999999999887 456678999999999987 55567899999999999988877633


Q ss_pred             C-------CceEEEEecCCceEEEeCCcceee-------eeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925           94 S-------PARSVDFAVGDKLAVITTDPFMEL-------NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (305)
Q Consensus        94 ~-------~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (305)
                      .       .+..++++|+++.++++.......       ...+..++.......   ..+.. ......+..+.++++++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~  157 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA---KPVRT-FPMPRQVYLMRAADDGS  157 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB---CCSEE-EECCSSCCCEEECTTSC
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee---eEEEe-eeccCceEEEEecCCCE
Confidence            2       467899999999888765322111       111222222111100   00000 00111222233333333


Q ss_pred             EEEEe----------------------------------------------------------------eCCCcEEEEeC
Q 021925          160 TIISA----------------------------------------------------------------GEDAIVRIWDT  175 (305)
Q Consensus       160 ~l~~~----------------------------------------------------------------~~dg~i~iwd~  175 (305)
                      .++++                                                                ..++.+.+||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         158 LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             EEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence            22221                                                                12223444444


Q ss_pred             CCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      .++.......  ..+...+..+.+++++..++... ++.|++||..+++.+..+.....+.+++|+|||++|++++.++.
T Consensus       238 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~  314 (346)
T d1jmxb_         238 KTGKTHTQEF--ADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND  314 (346)
T ss_dssp             TTCCEEEEEE--EECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSE
T ss_pred             CCCceEEEEe--ecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCc
Confidence            4443332221  13555677788888888777765 46799999999999999988888999999999999999988876


Q ss_pred             EEEEEeehhhhh
Q 021925          256 KFMLLVYLFVLF  267 (305)
Q Consensus       256 ~~~~~~~~~~~~  267 (305)
                           +.+|+..
T Consensus       315 -----v~v~D~~  321 (346)
T d1jmxb_         315 -----LAVFNPD  321 (346)
T ss_dssp             -----EEEEETT
T ss_pred             -----EEEEECc
Confidence                 5566554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.4e-22  Score=156.10  Aligned_cols=197  Identities=15%  Similarity=0.191  Sum_probs=145.4

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe----------------------------------eeEEecCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----------------------------------RLGTYRGH   51 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~----------------------------------~~~~~~~~   51 (305)
                      .++|...|.++++++++ .+++++.|+++++|+....+                                  .+..+. +
T Consensus        42 ~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  119 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-L  119 (287)
T ss_dssp             ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred             CCCCCCCEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-c
Confidence            46899999999998765 57888999999999754211                                  111111 1


Q ss_pred             CcceEEEEEcCCCcEEEEEeCCC-cEEEEecCCCCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEee
Q 021925           52 NGAVWCCDVSRDSMTLITGSADQ-TAKLWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA  128 (305)
Q Consensus        52 ~~~v~~i~~~~~~~~l~s~~~dg-~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (305)
                      ...  ..++++++..+++++.|+ .+++|++...+......  +...+.+++|+|++.+++++..     ++.+.+|+..
T Consensus       120 ~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-----dg~i~i~d~~  192 (287)
T d1pgua2         120 NSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV-----MGKILLYDLQ  192 (287)
T ss_dssp             SSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT
T ss_pred             cce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc-----cccccceeec
Confidence            122  234566777888777764 79999987666555544  5678999999999999988865     4456666653


Q ss_pred             cccCCCCCceEEEEeccCCCeeEEEEcCC----------CCEEEEeeCCCcEEEEeCCCC-cEeeeeccccCCccceEEE
Q 021925          129 RDPADQGGESVLILKGPQGRINRAVWGPL----------NRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSL  197 (305)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~  197 (305)
                      ...     .....+..|...|.+++|+|.          +.++++|+.|+.|++||++++ +.+..+.   +|...|+++
T Consensus       193 ~~~-----~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~---~h~~~V~~v  264 (287)
T d1pgua2         193 SRE-----VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN---AHKDGVNNL  264 (287)
T ss_dssp             TTE-----EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT---SSTTCEEEE
T ss_pred             ccc-----cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeC---CCCCCeEEE
Confidence            211     112235688999999999875          468999999999999999774 4445444   799999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEc
Q 021925          198 AKAADGSHFLTGSLDKSAKLWDA  220 (305)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~iwd~  220 (305)
                      +|+|++ .|++++.||.|++||+
T Consensus       265 ~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         265 LWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEETT-EEEEEETTSCEEEEEE
T ss_pred             EECCCC-EEEEEECCCeEEEEEE
Confidence            999986 5889999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-21  Score=150.77  Aligned_cols=203  Identities=18%  Similarity=0.343  Sum_probs=150.0

Q ss_pred             eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925           44 RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (305)
Q Consensus        44 ~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (305)
                      .+.....|...|+|++|  |+++|+||+.||+|+|||+++++++..+. +...|.+++|  +++++++++.+     +.+
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D-----~~i   77 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSD-----STV   77 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETT-----SCE
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccc-----ccc
Confidence            34455678888998765  78899999999999999999999999988 7888988876  56677766542     222


Q ss_pred             EEEEeeccc-------------------------------------CCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925          123 HVKRIARDP-------------------------------------ADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (305)
Q Consensus       123 ~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  165 (305)
                      .+|++....                                     ..........+..|...+....+.  ...+++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s  155 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS  155 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             cccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--cccccccc
Confidence            222211100                                     011122334455667777766665  45688999


Q ss_pred             CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCC
Q 021925          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL  244 (305)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  244 (305)
                      .|+.|++||+++++.+..+.   ++...+..+.++  +..+++++.||.|++||+++.+.+.... +...+.  .+++++
T Consensus       156 ~d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~  228 (293)
T d1p22a2         156 GDRTIKVWNTSTCEFVRTLN---GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDN  228 (293)
T ss_dssp             TTSEEEEEETTTCCEEEEEE---CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEECCS
T ss_pred             CCCceeeecCCCCcEEEEEc---ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeee--eccccc
Confidence            99999999999999988887   677888887775  5689999999999999999999988877 455554  456778


Q ss_pred             CcEEEeeCCcEEEEEEeehhhhhhh
Q 021925          245 DHVCIGEPQTIKFMLLVYLFVLFLD  269 (305)
Q Consensus       245 ~~l~~~~~~~~~~~~~~~~~~~~~~  269 (305)
                      .+|++|+.++.     +++|++...
T Consensus       229 ~~l~sg~~dg~-----i~iwd~~~~  248 (293)
T d1p22a2         229 KRIVSGAYDGK-----IKVWDLVAA  248 (293)
T ss_dssp             SEEEEEETTSC-----EEEEEHHHH
T ss_pred             eEEEEEcCCCE-----EEEEECCCC
Confidence            89999999987     566665443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.6e-22  Score=160.00  Aligned_cols=212  Identities=12%  Similarity=0.085  Sum_probs=137.1

Q ss_pred             eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee----EEEeeCCCceEEEEecCC-ceEEEeCCccee
Q 021925           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL----FTFNFDSPARSVDFAVGD-KLAVITTDPFME  117 (305)
Q Consensus        43 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~----~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~  117 (305)
                      +.+...++|++.|++|+|+|++++|++|+.||+|+|||++++...    ....+..+|.+++|+|++ ..+++++.    
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~----   77 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV----   77 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET----
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccc----
Confidence            456677899999999999999999999999999999999766543    333488999999999875 45665543    


Q ss_pred             eeeeEEEEEeecccCCCCCceEEEEec-cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec---cccCCccc
Q 021925          118 LNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD---KETGHKKT  193 (305)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~  193 (305)
                       ++.+.+|+....      ........ +........+.++...+++++.++.+++||++.+.......   ........
T Consensus        78 -d~~v~~w~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (342)
T d1yfqa_          78 -QGEILKVDLIGS------PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK  150 (342)
T ss_dssp             -TSCEEEECSSSS------SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred             -ccceeeeecccc------cccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccce
Confidence             445555555322      22223333 33344556667788899999999999999986533221111   00011122


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE------------------------------------------------
Q 021925          194 ITSLAKAADGSHFLTGSLDKSAKLWDARTLEL------------------------------------------------  225 (305)
Q Consensus       194 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------------------------------------------  225 (305)
                      ...+.+.+++..+++++.|+.|++||++..+.                                                
T Consensus       151 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~  230 (342)
T d1yfqa_         151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY  230 (342)
T ss_dssp             CCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred             eeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCccee
Confidence            23344445555556666666666665532110                                                


Q ss_pred             -------EEEE-------eeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925          226 -------IKTY-------VTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDI  270 (305)
Q Consensus       226 -------~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  270 (305)
                             ....       .+...+++++|+|++++|++|+.|+.     +++|++....
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~-----v~vWD~~~~~  284 (342)
T d1yfqa_         231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-----ISCWNLQTRK  284 (342)
T ss_dssp             TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-----EEEEETTTTE
T ss_pred             eccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE-----EEEEECCCCc
Confidence                   0000       02235789999999999999999998     6666654433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=7.1e-22  Score=162.02  Aligned_cols=189  Identities=12%  Similarity=-0.039  Sum_probs=145.8

Q ss_pred             CCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEE
Q 021925           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV   99 (305)
Q Consensus        20 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~   99 (305)
                      ++.-++++.+.||+|.|||..+++.+.++..+. .+..++|+|||+++++++.||.+++||+.+++.......       
T Consensus        30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i-------  101 (432)
T d1qksa2          30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI-------  101 (432)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE-------
T ss_pred             CCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEE-------
Confidence            333346888999999999999999999998764 689999999999999999999999999988764332210       


Q ss_pred             EEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCC
Q 021925          100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETG  178 (305)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~  178 (305)
                                                              .....|.+.+.+..|+|||++| ++++.++.|++||..++
T Consensus       102 ----------------------------------------~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~  141 (432)
T d1qksa2         102 ----------------------------------------KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  141 (432)
T ss_dssp             ----------------------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             ----------------------------------------ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc
Confidence                                                    0012233344556788999986 67778999999999999


Q ss_pred             cEeeeeccc--------cCCccceEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceEEE--EEeeCCCeeEEEecCCCCcE
Q 021925          179 KLLKESDKE--------TGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIK--TYVTERPVNAVTMSPLLDHV  247 (305)
Q Consensus       179 ~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l  247 (305)
                      +++..+...        ..+......+.++|+|..+ ++...++.|.+||..+++...  .+..+..+..++|+|+|+++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~  221 (432)
T d1qksa2         142 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF  221 (432)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred             cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEE
Confidence            988766421        1244567788999999875 556678999999998876544  45567788999999999998


Q ss_pred             EEeeCCcEE
Q 021925          248 CIGEPQTIK  256 (305)
Q Consensus       248 ~~~~~~~~~  256 (305)
                      ++++.++..
T Consensus       222 ~va~~~~~~  230 (432)
T d1qksa2         222 ITAANARNK  230 (432)
T ss_dssp             EEEEGGGTE
T ss_pred             EEeccccce
Confidence            888766654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=6.3e-21  Score=156.33  Aligned_cols=168  Identities=10%  Similarity=-0.006  Sum_probs=116.8

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee--eEEec---CCCcceEEEEEcCCCcEE-EEEeCCCcEEEE
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYR---GHNGAVWCCDVSRDSMTL-ITGSADQTAKLW   79 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~---~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vw   79 (305)
                      +..| ..+..++|||||+++++++.||.|++||+.+++.  ...+.   .|.+.+.+..|+|||++| ++++.++.|++|
T Consensus        58 ~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~  136 (432)
T d1qksa2          58 LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM  136 (432)
T ss_dssp             EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred             EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEE
Confidence            4455 4699999999999999999999999999987663  33333   455667777888999976 677889999999


Q ss_pred             ecCCCCeeEEEe------------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccC
Q 021925           80 NVETGAQLFTFN------------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQ  146 (305)
Q Consensus        80 d~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  146 (305)
                      |..+++.+..+.            .......+.+++++..++++...    .+.+..++..      ..+..... -.+.
T Consensus       137 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~----~~~i~~~d~~------~~~~~~~~~i~~g  206 (432)
T d1qksa2         137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE----TGKILLVDYT------DLNNLKTTEISAE  206 (432)
T ss_dssp             ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEETT------CSSEEEEEEEECC
T ss_pred             eCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc----CCeEEEEEcc------CCCcceEEEEccc
Confidence            999999887765            22334456677777665554321    1122222221      11222222 2345


Q ss_pred             CCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCCcEeeee
Q 021925          147 GRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKES  184 (305)
Q Consensus       147 ~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~  184 (305)
                      ..+..++++|+|+++++++. ++.+.++|..+++.+..+
T Consensus       207 ~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         207 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             CccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence            56789999999998887765 568899999887766554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=7e-19  Score=136.93  Aligned_cols=211  Identities=14%  Similarity=0.142  Sum_probs=166.0

Q ss_pred             EEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecC
Q 021925           26 FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG  104 (305)
Q Consensus        26 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~  104 (305)
                      ++++.|++|.+||+++++.++++.. ...+..++|+|||++| ++++.++.|++||+.+++.+..+.....+..+.++++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~   84 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPD   84 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccc
Confidence            4567899999999999999999874 4557899999999987 5667789999999999999999988888899999999


Q ss_pred             CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE-eeCCCcEEEEeCCCCcEeee
Q 021925          105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-AGEDAIVRIWDTETGKLLKE  183 (305)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~  183 (305)
                      +..+++....    ...+..++.      ...+....+. +.....++.++|+++.++. +..++.+.+|+..+.+....
T Consensus        85 ~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          85 GKQVYVTNMA----SSTLSVIDT------TSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             SSEEEEEETT----TTEEEEEET------TTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccccccc----cceeeeccc------ccceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeee
Confidence            9877765432    122233332      1223344443 4456788999999987764 55688899999999998888


Q ss_pred             eccccCCccceEEEEEcCCCCEEEEEeCC-CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeC
Q 021925          184 SDKETGHKKTITSLAKAADGSHFLTGSLD-KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       184 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                      +.    +...+..++++|++..+++++.+ +.+.+|+....+..........+..++++++++.++++..
T Consensus       154 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~  219 (301)
T d1l0qa2         154 VS----VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV  219 (301)
T ss_dssp             EE----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE
T ss_pred             cc----cCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccc
Confidence            75    45668889999999988877765 6788888888888888887788899999999998877643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3.9e-19  Score=140.49  Aligned_cols=245  Identities=8%  Similarity=0.069  Sum_probs=161.6

Q ss_pred             cccccceEEEEEcCCCCEEEEee-CCCceEEEEcCCCeeeEEe---cCCCcceEEEEEcCCCcEEEEEeC-CCcEEEEec
Q 021925            7 KGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNV   81 (305)
Q Consensus         7 ~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~vwd~   81 (305)
                      ..|.+.+..++|+|||++|++++ .|+.|++|++.......++   ..+...+..++|+|||++|++++. ++.+.+|+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            36888999999999999986555 5899999999865433222   224456788999999999988875 778999998


Q ss_pred             CCCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           82 ETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        82 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      ..........   ....+.++.++|+++.++......    ..+..+..........................++|++++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~  188 (333)
T d1ri6a_         113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ----DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  188 (333)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG----TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             ccccceecccccCCCccceEEEeeecceeeecccccc----ceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc
Confidence            7766544443   566788999999999888765322    223333332211100001111122334556789999999


Q ss_pred             CEEEEee-CCCcEEEEeCCCCcE----eeee---ccccCCccceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCceEEEE-
Q 021925          159 RTIISAG-EDAIVRIWDTETGKL----LKES---DKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKT-  228 (305)
Q Consensus       159 ~~l~~~~-~dg~i~iwd~~~~~~----~~~~---~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~-  228 (305)
                      .+++... ..+...+++......    ....   ............+++++++++++. +..++.+.+|++........ 
T Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (333)
T d1ri6a_         189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK  268 (333)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred             eeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEE
Confidence            8877655 456778887654321    1111   111123456678899999987655 45678999998875433222 


Q ss_pred             ---EeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          229 ---YVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       229 ---~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                         ......+.+++|+|||++|++++.++.
T Consensus       269 ~~~~~~~~~p~~~a~spDGk~l~va~~~~~  298 (333)
T d1ri6a_         269 EGFQPTETQPRGFNVDHSGKYLIAAGQKSH  298 (333)
T ss_dssp             EEEEECSSSCCCEEECTTSSEEEEECTTTC
T ss_pred             EEEeCCCCCeeEEEEeCCCCEEEEEECCCC
Confidence               224556789999999999888865544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=2.7e-19  Score=141.99  Aligned_cols=219  Identities=11%  Similarity=0.025  Sum_probs=152.1

Q ss_pred             ccccceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCC------cceEEEEEcCCCcEEEEEe---------
Q 021925            8 GHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHN------GAVWCCDVSRDSMTLITGS---------   71 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~------~~v~~i~~~~~~~~l~s~~---------   71 (305)
                      .|...+.+++|+|||++++ +++.++.|++||+.+++.+.++....      ..+..++|+|||+++++++         
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~  116 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  116 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeee
Confidence            4566788999999999875 55678999999999999888776432      2356889999999887765         


Q ss_pred             ---CCCcEEEEecCCCCeeEEE---eeCCCceEEEEecCCceEEEeCCcceeee--------------------------
Q 021925           72 ---ADQTAKLWNVETGAQLFTF---NFDSPARSVDFAVGDKLAVITTDPFMELN--------------------------  119 (305)
Q Consensus        72 ---~dg~v~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------------------------  119 (305)
                         .++.+.+|+..+++....+   ..+..+..+.+++++..++...+......                          
T Consensus       117 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (346)
T d1jmxb_         117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  196 (346)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             eccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccE
Confidence               4677889988776544332   24445556666666655544322100000                          


Q ss_pred             --------eeEEEEE--------------------eecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925          120 --------SAIHVKR--------------------IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (305)
Q Consensus       120 --------~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  171 (305)
                              .......                    +.................+...+..+.+++++.+++.... +.|.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~  275 (346)
T d1jmxb_         197 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLA  275 (346)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEE
T ss_pred             EEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEE
Confidence                    0000000                    0000000111223344567777888999999888776654 6799


Q ss_pred             EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (305)
Q Consensus       172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  231 (305)
                      +||..+++.+..+.    +...+.+++|+|||++|++++.||.|++||.++++.+.++..
T Consensus       276 v~d~~~~~~~~~~~----~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         276 KYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             EEETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCcEEEEEc----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            99999999888875    455788999999999999999999999999999999999883

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=2.4e-18  Score=138.25  Aligned_cols=247  Identities=8%  Similarity=-0.099  Sum_probs=163.2

Q ss_pred             ecccccceEEEEEcCCCCEEEEe-----eCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe---------
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSC-----AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS---------   71 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~-----~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~---------   71 (305)
                      ...+.+++.+++++|||+.++..     +.++.|.+||..+++.+.++..+..+  .++|+|||++|++++         
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            35688999999999999998764     23467999999999999998866544  799999999998875         


Q ss_pred             -CCCcEEEEecCCCCeeEEEeeCC--------CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925           72 -ADQTAKLWNVETGAQLFTFNFDS--------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (305)
Q Consensus        72 -~dg~v~vwd~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (305)
                       .++.|.+||..+++.+..+..+.        ....+.++++++.+.+.....   ......++...          ...
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~---~~~~~~~~~~~----------~~~  160 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA---GPAVGLVVQGG----------SSD  160 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC---CCceEEeeccC----------CeE
Confidence             35789999999999888776332        234567788877665543110   01111111110          011


Q ss_pred             eccCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCcEeeeecc-----------------------------------
Q 021925          143 KGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDK-----------------------------------  186 (305)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~-----------------------------------  186 (305)
                      ..+.....++.++|+++.+ ++.+.|+.+.+||...++.......                                   
T Consensus       161 ~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  240 (373)
T d2madh_         161 DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQAD  240 (373)
T ss_pred             EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEE
Confidence            2233345567777877544 5667778888888765443322110                                   


Q ss_pred             -----------ccCC----------ccceEEEEEcCCCCEE----------EEEeCCCeEEEEEcCCceEEEEEeeCCCe
Q 021925          187 -----------ETGH----------KKTITSLAKAADGSHF----------LTGSLDKSAKLWDARTLELIKTYVTERPV  235 (305)
Q Consensus       187 -----------~~~~----------~~~v~~~~~~~~~~~l----------~~~~~dg~i~iwd~~~~~~~~~~~~~~~v  235 (305)
                                 ...+          ......+++++++..+          ++...++.+.+||..+++.+..+.+...+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~  320 (373)
T d2madh_         241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDV  320 (373)
T ss_pred             cCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCe
Confidence                       0000          0112234555555543          34555678999999999999999888889


Q ss_pred             eEEEecCCCCc--EEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925          236 NAVTMSPLLDH--VCIGEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       236 ~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      .+++|+|||+.  +++++.++.     +++|+.......
T Consensus       321 ~~~a~spDG~~~l~vt~~~d~~-----v~v~D~~tg~~~  354 (373)
T d2madh_         321 DAISVAQDGGPDLYALSAGTEV-----LHIYDAGAGDQD  354 (373)
T ss_pred             eEEEECCCCCEEEEEEeCCCCe-----EEEEECCCCCEE
Confidence            99999999985  345666665     677776555444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=5.5e-19  Score=144.71  Aligned_cols=192  Identities=9%  Similarity=-0.019  Sum_probs=140.8

Q ss_pred             EEcCCCC--EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC
Q 021925           17 KYNKDGD--LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS   94 (305)
Q Consensus        17 ~~~~~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~   94 (305)
                      .++.|.+  ++++.+.||+|++||+.+++.+.++..|. .+..++|+|||++|++++.|++|++||+.+++.......  
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i--  101 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI--  101 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE--
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE--
Confidence            3555433  56778889999999999999999999764 589999999999999999999999999998876543221  


Q ss_pred             CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe-eCCCcEEEE
Q 021925           95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIW  173 (305)
Q Consensus        95 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iw  173 (305)
                                                                   ....+|.+.+.+++|+|||++++++ ..++.+.+|
T Consensus       102 ---------------------------------------------~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~  136 (426)
T d1hzua2         102 ---------------------------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM  136 (426)
T ss_dssp             ---------------------------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE
T ss_pred             ---------------------------------------------eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEE
Confidence                                                         0112344445567789999987655 578999999


Q ss_pred             eCCCCcEeeeeccc--------cCCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceE--EEEEeeCCCeeEEEecC
Q 021925          174 DTETGKLLKESDKE--------TGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLEL--IKTYVTERPVNAVTMSP  242 (305)
Q Consensus       174 d~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~  242 (305)
                      |..++++.......        ..+......+..++++..++.... .+.+.+++..+...  +....+...+..++++|
T Consensus       137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (426)
T d1hzua2         137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS  216 (426)
T ss_dssp             ETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT
T ss_pred             cCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC
Confidence            99998877665421        013344566777777777665443 46677777766543  33445777899999999


Q ss_pred             CCCcEEEeeCCcEE
Q 021925          243 LLDHVCIGEPQTIK  256 (305)
Q Consensus       243 ~~~~l~~~~~~~~~  256 (305)
                      ++++++++..+...
T Consensus       217 ~g~~~~~a~~~~~~  230 (426)
T d1hzua2         217 SHRYFMTAANNSNK  230 (426)
T ss_dssp             TSCEEEEEETTCSE
T ss_pred             CCcEEEeeeecccc
Confidence            99998888655543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=5.7e-19  Score=140.89  Aligned_cols=253  Identities=9%  Similarity=0.018  Sum_probs=163.9

Q ss_pred             ceEEEEEcCCCCEEEEee-----CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe----------CCCcE
Q 021925           12 PLTYLKYNKDGDLLFSCA-----KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTA   76 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~-----~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~dg~v   76 (305)
                      ++.-.+.+|||+.++...     .++.|.+||..+++.+.++..+..+  .++|+|||++|++++          .|+.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            344446689999987653     3567999999999999988765544  799999999887653          47899


Q ss_pred             EEEecCCCCeeEEEee--------CCCceEEEEecCCceEEEeCCcc---eeeee--e-EEEEEeeccc-----------
Q 021925           77 KLWNVETGAQLFTFNF--------DSPARSVDFAVGDKLAVITTDPF---MELNS--A-IHVKRIARDP-----------  131 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~---~~~~~--~-~~~~~~~~~~-----------  131 (305)
                      ++||..+++.+..+..        ......++|+++++.+++.....   .....  . .....+....           
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence            9999999998887762        22356789999998877653210   10000  0 0000000000           


Q ss_pred             ---CCCCCceE----------EEE------eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccC---
Q 021925          132 ---ADQGGESV----------LIL------KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG---  189 (305)
Q Consensus       132 ---~~~~~~~~----------~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---  189 (305)
                         ....++..          ...      ..+...+....+.+++..++.++.++.+++|++..++....-. ...   
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~  239 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA-VEALTE  239 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCC-EESSCH
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEec-cCCccc
Confidence               00000000          000      1122234556777888889999999999999998765422111 001   


Q ss_pred             -------CccceEEEEEcCCCCEEEEEeCC----------CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCc-E-EEe
Q 021925          190 -------HKKTITSLAKAADGSHFLTGSLD----------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH-V-CIG  250 (305)
Q Consensus       190 -------~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-l-~~~  250 (305)
                             .......+++++++..++....+          ..|.+||..+++.+..+..+..+.+++|+|||+. + +++
T Consensus       240 ~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~  319 (355)
T d2bbkh_         240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS  319 (355)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred             ceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEE
Confidence                   11223457889999988766543          3699999999999999887778999999999984 3 444


Q ss_pred             eCCcEEEEEEeehhhhhhhhhh
Q 021925          251 EPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      +.++.     +.+|+.......
T Consensus       320 ~~d~~-----i~v~D~~tg~~~  336 (355)
T d2bbkh_         320 TGDKT-----LYIHDAESGEEL  336 (355)
T ss_dssp             TTTTE-----EEEEETTTCCEE
T ss_pred             CCCCE-----EEEEECCCCCEE
Confidence            55665     666666444333

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=4.7e-17  Score=130.59  Aligned_cols=223  Identities=7%  Similarity=-0.061  Sum_probs=131.6

Q ss_pred             EEEEcCCCCEEEEee----------CCCceEEEEcCCCeeeEEecCCCc-------------------------------
Q 021925           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHNG-------------------------------   53 (305)
Q Consensus        15 ~~~~~~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~-------------------------------   53 (305)
                      .++|+|||++|++++          .++.|.+||..+++.+..+..+..                               
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence            789999999999875          357899999998877655432221                               


Q ss_pred             ----------------ceEEEEEcCCCcE-EEEEeCCCcEEEEecCCCCeeEEEeeC-------CCceEEEEecCCceEE
Q 021925           54 ----------------AVWCCDVSRDSMT-LITGSADQTAKLWNVETGAQLFTFNFD-------SPARSVDFAVGDKLAV  109 (305)
Q Consensus        54 ----------------~v~~i~~~~~~~~-l~s~~~dg~v~vwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~  109 (305)
                                      ...++.++|+++. +++.+.|+.+.+|+...++........       .......+.+++..+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (373)
T d2madh_         150 VGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW  229 (373)
T ss_pred             eEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEE
Confidence                            1234445555543 345556666666666655544433210       1112223333443443


Q ss_pred             EeCCcceeeeeeE--EEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE----------EEEeeCCCcEEEEeCCC
Q 021925          110 ITTDPFMELNSAI--HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT----------IISAGEDAIVRIWDTET  177 (305)
Q Consensus       110 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------l~~~~~dg~i~iwd~~~  177 (305)
                      ...+.........  .........  ..................++++|++..          ++....++.+.+||..+
T Consensus       230 ~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t  307 (373)
T d2madh_         230 PVYSGKILQADISAAGATNKAPID--ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV  307 (373)
T ss_pred             ecCCceEEEEEcCCCeEEEEEeec--cccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC
Confidence            3332211111000  000000000  000001111111223344555555544          44556677899999999


Q ss_pred             CcEeeeeccccCCccceEEEEEcCCCCE--EEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCC
Q 021925          178 GKLLKESDKETGHKKTITSLAKAADGSH--FLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPL  243 (305)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~  243 (305)
                      ++.+..+.    +...+..++|+|||+.  +++++.|+.|++||+.+++.++++. ++...+.+++.++
T Consensus       308 ~~~~~~~~----~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         308 GQTSSQIS----LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CcEEEEec----CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            99998885    6678899999999984  4678899999999999999999997 6777788877654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=8.4e-18  Score=134.01  Aligned_cols=224  Identities=14%  Similarity=0.122  Sum_probs=150.1

Q ss_pred             eEEEEEcCCCCEEEEee----------CCCceEEEEcCCCeeeEEecCCCc-------ceEEEEEcCCCcEEEEEe--CC
Q 021925           13 LTYLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHNG-------AVWCCDVSRDSMTLITGS--AD   73 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~-------~v~~i~~~~~~~~l~s~~--~d   73 (305)
                      ...++|||||++|++++          .|+.|++||..+++.+..+..+..       ....++|+|++++++.++  .+
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence            34789999999887643          478999999999998887753322       235678999999887764  46


Q ss_pred             CcEEEEecCCCCeeEEEeeC--------CCceEEEEecCCceEEEeCCcceee---------------------------
Q 021925           74 QTAKLWNVETGAQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMEL---------------------------  118 (305)
Q Consensus        74 g~v~vwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~---------------------------  118 (305)
                      ..+.+|+..+++.+..+...        .....+.+++++..+..........                           
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (355)
T d2bbkh_         129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR  208 (355)
T ss_dssp             CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCe
Confidence            78999999999887776532        2344567788877766643211100                           


Q ss_pred             ------eeeEEEEEeecccCCCCCceEEEEecc----------CCCeeEEEEcCCCCEEEEeeCC----------CcEEE
Q 021925          119 ------NSAIHVKRIARDPADQGGESVLILKGP----------QGRINRAVWGPLNRTIISAGED----------AIVRI  172 (305)
Q Consensus       119 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~d----------g~i~i  172 (305)
                            .+.+.+++....    ....+.....+          ......++++|++..++....+          ..|.+
T Consensus       209 ~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v  284 (355)
T d2bbkh_         209 LVWPTYTGKIHQIDLSSG----DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  284 (355)
T ss_dssp             EEEEBTTSEEEEEECTTS----SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             EEEecCCCeEEEEecCCC----cEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence                  001111111100    00000001111          1223457888999887765543          36999


Q ss_pred             EeCCCCcEeeeeccccCCccceEEEEEcCCCC--EEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCC
Q 021925          173 WDTETGKLLKESDKETGHKKTITSLAKAADGS--HFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL  244 (305)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  244 (305)
                      ||..+++.+..+.    +...+.+++|+|||+  ++++++.|+.|++||+++++.++++. .+.....+.+.++|
T Consensus       285 ~d~~t~~~~~~~~----~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         285 LDAKTGERLAKFE----MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EETTTCCEEEEEE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             EeCCCCcEEEEec----CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            9999999888875    456788999999997  35667789999999999999999987 55555666665543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=4e-15  Score=117.07  Aligned_cols=222  Identities=13%  Similarity=0.123  Sum_probs=147.2

Q ss_pred             EEEEeeCCCceEEEEcCCCeeeEEe--cCCCcceEEEEEcCCCcEEEEEe-CCCcEEEEecCCCCeeE----EEeeCCCc
Q 021925           24 LLFSCAKDHTPTVWFADNGERLGTY--RGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLF----TFNFDSPA   96 (305)
Q Consensus        24 ~l~s~~~dg~v~iw~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~----~~~~~~~v   96 (305)
                      .+++++.|++|++|++.+...+..+  ..|.+.+..++|+|||++|++++ .|+.|++|++.......    .......+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4577788999999999765433322  25888999999999999886554 58999999998664332    23356678


Q ss_pred             eEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeC
Q 021925           97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDT  175 (305)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~  175 (305)
                      ..++++|+++.++++....    ..+..+.....    ..........+...+.++.++|++++++.++. +..|.+|+.
T Consensus        86 ~~l~~spDg~~l~v~~~~~----~~v~~~~~~~~----~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNA----GNVSVTRLEDG----LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             SEEEECTTSSEEEEEETTT----TEEEEEEEETT----EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             eEEEEcCCCCEEeecccCC----Cceeeeccccc----cceecccccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence            8899999999988875321    22223332211    11222334456677888999999998887775 567999998


Q ss_pred             CCCcEeeeec---cccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCce----EEEEEe-------eCCCeeEEEe
Q 021925          176 ETGKLLKESD---KETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE----LIKTYV-------TERPVNAVTM  240 (305)
Q Consensus       176 ~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~-------~~~~v~~~~~  240 (305)
                      ..........   ...........++|++++..++... ..+...+++.....    ......       .......+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence            7654322211   1113445678899999998876554 56678888765321    222221       2234567889


Q ss_pred             cCCCCcEEEeeCC
Q 021925          241 SPLLDHVCIGEPQ  253 (305)
Q Consensus       241 ~~~~~~l~~~~~~  253 (305)
                      ++++++++++...
T Consensus       238 s~d~~~~~~~~~~  250 (333)
T d1ri6a_         238 TPDGRHLYACDRT  250 (333)
T ss_dssp             CTTSSEEEEEETT
T ss_pred             ecccCceeeeccc
Confidence            9999987776443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.2e-16  Score=128.20  Aligned_cols=221  Identities=10%  Similarity=0.005  Sum_probs=146.9

Q ss_pred             EEEEEcCCCCEEEEee----------CCCceEEEEcCCCeeeEEecCCCc-------ceEEEEEcCCCcEEEEEe-CCCc
Q 021925           14 TYLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHNG-------AVWCCDVSRDSMTLITGS-ADQT   75 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~-------~v~~i~~~~~~~~l~s~~-~dg~   75 (305)
                      ..++|+|||+.|++++          .|+.|++||..+++.+..+..+..       ....++|+|||++|+++. .++.
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~  147 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe
Confidence            3588999999888754          367899999999998887764332       234689999999998776 5799


Q ss_pred             EEEEecCCCCeeEEEeeCC--------CceEEEEecCCceEEEeCCcceeee----------------------------
Q 021925           76 AKLWNVETGAQLFTFNFDS--------PARSVDFAVGDKLAVITTDPFMELN----------------------------  119 (305)
Q Consensus        76 v~vwd~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~~----------------------------  119 (305)
                      +.+||+.+++....+..+.        ....+.+++++..+...........                            
T Consensus       148 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  227 (368)
T d1mdah_         148 AAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW  227 (368)
T ss_dssp             EEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred             EEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE
Confidence            9999999998888776332        2344556667776666532111000                            


Q ss_pred             ---eeEEEEEeecccCCCCCceEEEEec----------cCCCeeEEEEcCCCCEEEEeeCC---------CcEEEEeCCC
Q 021925          120 ---SAIHVKRIARDPADQGGESVLILKG----------PQGRINRAVWGPLNRTIISAGED---------AIVRIWDTET  177 (305)
Q Consensus       120 ---~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~  177 (305)
                         ..+...+...    ...........          .......++++|++..++....+         ..|.+||..+
T Consensus       228 ~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t  303 (368)
T d1mdah_         228 AVASSILQGDIPA----AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV  303 (368)
T ss_dssp             CBSSCCEEEECCS----SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred             ecCCCEEEEeecC----CceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC
Confidence               0000000000    00000000000          01123457888888876654322         3599999999


Q ss_pred             CcEeeeeccccCCccceEEEEEcCCCCE--EEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecC
Q 021925          178 GKLLKESDKETGHKKTITSLAKAADGSH--FLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (305)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~  242 (305)
                      ++.+..+.    +...+..++|+|||+.  ++++..|+.|++||..+++.+.++......+.+++-+
T Consensus       304 ~~~~~~~~----~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~~  366 (368)
T d1mdah_         304 GQTSGPIS----NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             CCEEECCE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred             CcEeEEec----CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEEec
Confidence            99888875    4567889999999973  4567779999999999999999998666566766643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.60  E-value=5e-14  Score=112.80  Aligned_cols=243  Identities=11%  Similarity=-0.006  Sum_probs=160.2

Q ss_pred             cccceEEEEEcCCCCEEEEe-eCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcCCCcE--EEEEeCCC----------
Q 021925            9 HERPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMT--LITGSADQ----------   74 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~--l~s~~~dg----------   74 (305)
                      |.-.......+|||++|++. ..++.|.++|+++++....+. .+...+..++|+|+++.  ++..+.+.          
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            44556666678999998665 467899999999999887765 35678999999999984  44333321          


Q ss_pred             -------cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee----------eeeEEEEEee---------
Q 021925           75 -------TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL----------NSAIHVKRIA---------  128 (305)
Q Consensus        75 -------~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~---------  128 (305)
                             .+..+|..+.+....+........+.++|++++++++..+....          ...+...+..         
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dG  229 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAG  229 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTT
T ss_pred             ccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCC
Confidence                   23568999999998888888999999999999988775421100          0011111100         


Q ss_pred             -----------cccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE-eeCCCcEEEEeCCCCcEe--------eeecccc
Q 021925          129 -----------RDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-AGEDAIVRIWDTETGKLL--------KESDKET  188 (305)
Q Consensus       129 -----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~--------~~~~~~~  188 (305)
                                 ........+.+..+.... ....+.++|||+++++ +..+++|.+||+.+.+..        ..+....
T Consensus       230 k~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~  308 (441)
T d1qnia2         230 NFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP  308 (441)
T ss_dssp             CCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC
T ss_pred             CEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec
Confidence                       000011223344444433 3577999999998765 567999999998752210        0111000


Q ss_pred             CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----------eEEEEE------eeCCCeeEEEecCCCCcEEEeeC
Q 021925          189 GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----------ELIKTY------VTERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       189 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                      ...-.....+|+++|..+.+...|..|..|++...          ..+..+      .|...+.+.+++|||++|++++.
T Consensus       309 ~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         309 ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             ccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence            11223455689999988889999999999997421          122222      25556777889999999999943

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=2.2e-11  Score=92.53  Aligned_cols=227  Identities=13%  Similarity=0.074  Sum_probs=140.0

Q ss_pred             CceEecccccceEEEEEcCCCCEEEEeeCCC---ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CCcEE
Q 021925            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDH---TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAK   77 (305)
Q Consensus         2 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg---~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~   77 (305)
                      ++..+..+.+.+...+|||||+.||....+.   .+.+.+...+.. ..+..+.+......|+|+|+.++.... ++...
T Consensus        30 ~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~  108 (269)
T d2hqsa1          30 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN  108 (269)
T ss_dssp             SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccc
Confidence            3455666778888999999999998765433   355556555554 445557788899999999998876554 33333


Q ss_pred             EE--ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925           78 LW--NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (305)
Q Consensus        78 vw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (305)
                      ++  .....................+++++..........    +...++.....     ......+...........|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~s  179 (269)
T d2hqsa1         109 LYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA----GRPQVYKVNIN-----GGAPQRITWEGSQNQDADVS  179 (269)
T ss_dssp             EEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETT-----SSCCEECCCSSSEEEEEEEC
T ss_pred             eeecccccccceeeeeccccccccccccccccceeccccc----CCceEeeeecc-----cccceeeecccccccccccc
Confidence            33  333333333333444445556677666555543211    11122222211     12223334455667778999


Q ss_pred             CCCCEEEEeeCC-C--cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC---CCeEEEEEcCCceEEEEE
Q 021925          156 PLNRTIISAGED-A--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTY  229 (305)
Q Consensus       156 ~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~  229 (305)
                      |+++.++..+.+ +  .+.+.|...+.. ...    ..........|+|||+.|+..+.   ...++++++..+......
T Consensus       180 pdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~----~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt  254 (269)
T d2hqsa1         180 SDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL----SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  254 (269)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTCCE-EEC----CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred             cccceeEEEeecCCceeeeEeecccccc-eEe----ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEe
Confidence            999988876654 3  445555554443 222    24455677899999999875554   346899999877665544


Q ss_pred             eeCCCeeEEEecCC
Q 021925          230 VTERPVNAVTMSPL  243 (305)
Q Consensus       230 ~~~~~v~~~~~~~~  243 (305)
                      .....+...+|+|-
T Consensus       255 ~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         255 ATDGQVKFPAWSPY  268 (269)
T ss_dssp             CSSSEEEEEEECCC
T ss_pred             CCCCcEEeEEeCCC
Confidence            46667888899984

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.53  E-value=1.1e-13  Score=114.16  Aligned_cols=105  Identities=6%  Similarity=-0.100  Sum_probs=83.8

Q ss_pred             ecccccceEEEEEcCCCCEEEEeeC---------CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcE
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSCAK---------DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTA   76 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~~~---------dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v   76 (305)
                      +.+|...|.++.|||||++|+.++.         ++.+.+||+.+++. ..+..|.+.+..+.|+|||+.+|.. .++.+
T Consensus        57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l  134 (470)
T d2bgra1          57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDI  134 (470)
T ss_dssp             TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEE
T ss_pred             hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccc
Confidence            4566788999999999999998753         56789999998874 5677889999999999999999986 45789


Q ss_pred             EEEecCCCCeeEEEee-------------------CCCceEEEEecCCceEEEeC
Q 021925           77 KLWNVETGAQLFTFNF-------------------DSPARSVDFAVGDKLAVITT  112 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~~~~~~  112 (305)
                      .+|+..+++.......                   .+....+.|+|+|+.++...
T Consensus       135 ~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             eEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence            9999998876554321                   12345678999999888763

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=2.4e-12  Score=102.98  Aligned_cols=231  Identities=9%  Similarity=-0.027  Sum_probs=146.4

Q ss_pred             EEEeeCCCceEEEEcCCCeeeEEecC------------------------------CCcceEEEEEcCCCcEEEEEe-CC
Q 021925           25 LFSCAKDHTPTVWFADNGERLGTYRG------------------------------HNGAVWCCDVSRDSMTLITGS-AD   73 (305)
Q Consensus        25 l~s~~~dg~v~iw~~~~~~~~~~~~~------------------------------~~~~v~~i~~~~~~~~l~s~~-~d   73 (305)
                      +++++.+|.|++|++.+++.++++.-                              |.-........|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56788899999999999998887631                              223345555678999886654 58


Q ss_pred             CcEEEEecCCCCeeEEEe--eCCCceEEEEecCCceEEE--eCCcceeeee-------eEEEEEeecccCCCCCceEEEE
Q 021925           74 QTAKLWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVI--TTDPFMELNS-------AIHVKRIARDPADQGGESVLIL  142 (305)
Q Consensus        74 g~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  142 (305)
                      ++|.++|+++++....+.  ....+..++++|+++...+  .......+..       ......+. .......+....+
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~-~iD~~t~~v~~qI  172 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFT-AIDAETMDVAWQV  172 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEE-EEETTTCSEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEE-eecCccceeeEEE
Confidence            899999999999887766  4677889999999885433  3322221100       00000000 0111223333333


Q ss_pred             eccCCCeeEEEEcCCCCEEEEeeCC-----------------------------------------CcEEEEeCCCCcEe
Q 021925          143 KGPQGRINRAVWGPLNRTIISAGED-----------------------------------------AIVRIWDTETGKLL  181 (305)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~l~~~~~d-----------------------------------------g~i~iwd~~~~~~~  181 (305)
                      .. .+....+.++|+|+++++.+.+                                         +.+.+++....+.+
T Consensus       173 ~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         173 IV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             EE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             ec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            32 2456789999999988877643                                         23444444444455


Q ss_pred             eeeccccCCccceEEEEEcCCCCEEE-EEeCCCeEEEEEcCCceEE------------EEEeeCCCeeEEEecCCCCcEE
Q 021925          182 KESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDARTLELI------------KTYVTERPVNAVTMSPLLDHVC  248 (305)
Q Consensus       182 ~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~  248 (305)
                      ..+.    -......+.++|||++++ ++..+++|.+||+++.+..            .+....-.....+|+++|....
T Consensus       252 ~~IP----vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yt  327 (441)
T d1qnia2         252 RYIP----VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYT  327 (441)
T ss_dssp             EEEC----CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEE
T ss_pred             EEEe----CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEE
Confidence            5554    223356789999999865 5677999999998764321            1111222345668999998887


Q ss_pred             EeeCCcEEEEEEe
Q 021925          249 IGEPQTIKFMLLV  261 (305)
Q Consensus       249 ~~~~~~~~~~~~~  261 (305)
                      +..-++....|.+
T Consensus       328 s~~~ds~v~kw~~  340 (441)
T d1qnia2         328 TLFIDSQVCKWNI  340 (441)
T ss_dssp             EETTTTEEEEEEH
T ss_pred             cccccceEEEecc
Confidence            7777877544443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=2.5e-13  Score=108.45  Aligned_cols=252  Identities=7%  Similarity=-0.082  Sum_probs=151.8

Q ss_pred             ccccceEEEEEcCCCCEE--E-EeeCCCc--eEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe----------C
Q 021925            8 GHERPLTYLKYNKDGDLL--F-SCAKDHT--PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------A   72 (305)
Q Consensus         8 ~h~~~v~~~~~~~~~~~l--~-s~~~dg~--v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~   72 (305)
                      .+.++...++..++++..  + +...+|.  |.+||..+++.+.++..+..+  .++|+|||+.|++++          .
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~   94 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR   94 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence            345556666777888753  2 2344554  666799999999888876654  589999999888754          3


Q ss_pred             CCcEEEEecCCCCeeEEEeeC--------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC------------
Q 021925           73 DQTAKLWNVETGAQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA------------  132 (305)
Q Consensus        73 dg~v~vwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  132 (305)
                      |+.|.+||..+++.+..+..+        .....++|+|+++.++++...    .+.+.++++.....            
T Consensus        95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~  170 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG----SSAAAGLSVPGASDDQLTKSASCFHI  170 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS----SSCEEEEEETTTEEEEEEECSSCCCC
T ss_pred             CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC----CCeEEEEECCCCcEeEEeeccCcceE
Confidence            678999999999998887632        234579999999998876421    12222222211000            


Q ss_pred             -----------CCCCceEEE----------------EeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec
Q 021925          133 -----------DQGGESVLI----------------LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD  185 (305)
Q Consensus       133 -----------~~~~~~~~~----------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  185 (305)
                                 ...+.....                ...+...+....+.+++..+.+.  .+.+++++...+.......
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~  248 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAA  248 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECC
T ss_pred             ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEee
Confidence                       000000000                01112223344555555444333  3556666665544332211


Q ss_pred             ccc---------CCccceEEEEEcCCCCEEEEEeCC---------CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCc-
Q 021925          186 KET---------GHKKTITSLAKAADGSHFLTGSLD---------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH-  246 (305)
Q Consensus       186 ~~~---------~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-  246 (305)
                      ...         ........+++++++..++....+         ..|.+||..+++.+..+.....+.+++|+|||+. 
T Consensus       249 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~  328 (368)
T d1mdah_         249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASD  328 (368)
T ss_dssp             CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCE
T ss_pred             cccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEE
Confidence            000         011122347788988877655332         3599999999999998887778999999999974 


Q ss_pred             EEE-eeCCcEEEEEEeehhhhhhhhhh
Q 021925          247 VCI-GEPQTIKFMLLVYLFVLFLDILF  272 (305)
Q Consensus       247 l~~-~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
                      +++ +..++.     +.+|+.......
T Consensus       329 ly~s~~~~~~-----v~v~D~~tgk~~  350 (368)
T d1mdah_         329 NYANSAGTEV-----LDIYDAASDQDQ  350 (368)
T ss_dssp             EEEEETTTTE-----EEEEESSSCEEE
T ss_pred             EEEEeCCCCe-----EEEEECCCCCEE
Confidence            444 444554     666665444433

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.48  E-value=5.3e-10  Score=86.89  Aligned_cols=235  Identities=8%  Similarity=-0.038  Sum_probs=153.7

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC----CCcEEEEecCCCC
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA----DQTAKLWNVETGA   85 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~----dg~v~vwd~~~~~   85 (305)
                      ...+..++|.++|++.++-..++.|..|+.++++....+.........+++.++|+++++...    .+.+...+..+..
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            344578999999997777778899999988777666655556667899999999987776543    2335555555554


Q ss_pred             eeEEEee---CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           86 QLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        86 ~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      .......   ......+++.++|.+.+...... .......++.+..     .+..+..+...-...+.++|+|+++.|+
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~-~~~~~g~v~~~~~-----dg~~~~~~~~~~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY-STNPLGGVYYVSP-----DFRTVTPIIQNISVANGIALSTDEKVLW  192 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCB-TTBCCEEEEEECT-----TSCCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccc-cccCcceeEEEec-----ccceeEEEeeccceeeeeeeccccceEE
Confidence            4443332   23466788999998766644321 1111222222221     1223333333445567899999998665


Q ss_pred             Ee-eCCCcEEEEeCCCC-cEeee----eccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC----
Q 021925          163 SA-GEDAIVRIWDTETG-KLLKE----SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE----  232 (305)
Q Consensus       163 ~~-~~dg~i~iwd~~~~-~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----  232 (305)
                      .+ +..+.|..||+... .....    .............+++.++|++.++....+.|.++|. +++.+..+..+    
T Consensus       193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~  271 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE  271 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG
T ss_pred             EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCC
Confidence            44 56789999998642 11111    1111112234668999999998888888999999995 68888888733    


Q ss_pred             ---CCeeEEEecCCCCcEEEee
Q 021925          233 ---RPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       233 ---~~v~~~~~~~~~~~l~~~~  251 (305)
                         ..+++++|.|.+..+++..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         272 GHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             TCSCBCCEEEECTTSCEEEEEE
T ss_pred             CcCceeeeEEEeCCCCEEEEEc
Confidence               2468999999887776654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.47  E-value=1.2e-12  Score=107.86  Aligned_cols=99  Identities=9%  Similarity=0.119  Sum_probs=80.5

Q ss_pred             EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-----CCCcceEEEEEcCCCcEEEEEeC---------CCcEEEE
Q 021925           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-----GHNGAVWCCDVSRDSMTLITGSA---------DQTAKLW   79 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~l~s~~~---------dg~v~vw   79 (305)
                      ..+.|.++++++..  .|+.+.+||+.+++....+.     .|...|.++.|+|||++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35789999987764  47889999999998766554     34578999999999999998753         5678999


Q ss_pred             ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCc
Q 021925           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP  114 (305)
Q Consensus        80 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  114 (305)
                      |+++++......++..+..+.|+|+|+.++...+.
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~  132 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNN  132 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETT
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEeecc
Confidence            99988765555578889999999999999987653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.47  E-value=4.6e-11  Score=90.27  Aligned_cols=228  Identities=7%  Similarity=-0.021  Sum_probs=141.6

Q ss_pred             cceEEEEEcCCCCEEEEe-eCCCceEEEEcCCCeee-EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925           11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~   88 (305)
                      -...+++++++|+..++. +..+.+..++....... ....+ ......++++++++.+++....+.+++++-.+...+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            446899999999966654 45566776654433222 22222 2345788999999887777777777777655555443


Q ss_pred             EEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC
Q 021925           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (305)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  168 (305)
                      .......+..+++.+++++.+......       ........    .................++++|+++.+++...++
T Consensus        93 ~~~~~~~p~~iavd~~g~i~v~d~~~~-------~~~~~~~~----~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          93 PFDGLNYPEGLAVDTQGAVYVADRGNN-------RVVKLAAG----SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             CCCSCCSEEEEEECTTCCEEEEEGGGT-------EEEEECTT----CSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGT
T ss_pred             eeeeeeecccccccccceeEeeccccc-------cccccccc----cceeeeeeecccCCcceeeecCCCCEeeeccccc
Confidence            333445678899999888766543211       11111110    0011111112234567899999999888888889


Q ss_pred             cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCc
Q 021925          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDH  246 (305)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~  246 (305)
                      .|..+|...........   ........++++++|+++++....+.|..++...... ..+.  .-.....++++++|.+
T Consensus       162 ~i~~~d~~~~~~~~~~~---~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l  237 (260)
T d1rwia_         162 RVVKLEAESNNQVVLPF---TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTV  237 (260)
T ss_dssp             EEEEECTTTCCEEECCC---SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCE
T ss_pred             cccccccccceeeeeec---cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCE
Confidence            99999987554333222   3445678899999999888888888899888654432 2222  2245689999999976


Q ss_pred             EEEeeCCc
Q 021925          247 VCIGEPQT  254 (305)
Q Consensus       247 l~~~~~~~  254 (305)
                      +++-..++
T Consensus       238 ~vad~~~~  245 (260)
T d1rwia_         238 YVADRGND  245 (260)
T ss_dssp             EEEEGGGT
T ss_pred             EEEECCCC
Confidence            65544433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.44  E-value=5e-10  Score=86.75  Aligned_cols=238  Identities=8%  Similarity=0.050  Sum_probs=149.8

Q ss_pred             cceEEEEEcCCCCEEEEeeC-------CCceEEEEcCCCeeeEEecC----CCcceEEEEEcCCCcEEEEEeCCCcEEEE
Q 021925           11 RPLTYLKYNKDGDLLFSCAK-------DHTPTVWFADNGERLGTYRG----HNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~-------dg~v~iw~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~s~~~dg~v~vw   79 (305)
                      .....++|.|+|+++++...       +|.|..||..+++.......    ..+.-..++|.++++.++++...+.+...
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34677899999997776432       46788888887765433221    12235789999999888888777778888


Q ss_pred             ecCCCCeeEEEe-eC----CCceEEEEecCCceEEEeCCccee--------eeeeEEEEEeecccCCCCCceEEEEeccC
Q 021925           80 NVETGAQLFTFN-FD----SPARSVDFAVGDKLAVITTDPFME--------LNSAIHVKRIARDPADQGGESVLILKGPQ  146 (305)
Q Consensus        80 d~~~~~~~~~~~-~~----~~v~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (305)
                      +.+......... ..    .....+++.++|.+.++.......        ......++.+..     .++. ..+....
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-----dg~~-~~~~~~~  171 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-----DGQM-IQVDTAF  171 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----TSCE-EEEEEEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-----cCce-eEeeCCc
Confidence            876543221111 11    135778999999887765332110        011122333221     1122 2222333


Q ss_pred             CCeeEEEEcCCCC-----EEEEeeCCCcEEEEeCCCCcEeee---eccc-cCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925          147 GRINRAVWGPLNR-----TIISAGEDAIVRIWDTETGKLLKE---SDKE-TGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (305)
Q Consensus       147 ~~i~~~~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  217 (305)
                      ...+.++|+|+++     +.++-+..+.|..||+.....+..   +... .........+++.++|++.++....+.|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            4456789998764     444556678999998764433221   1111 112334568999999998888888899999


Q ss_pred             EEcCCceEEEEEee-CCCeeEEEecCCCCcEEEeeCCc
Q 021925          218 WDARTLELIKTYVT-ERPVNAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       218 wd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~  254 (305)
                      ||.+.++.+..+.. ...+++++|.|+++.|.+....+
T Consensus       252 ~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~  289 (314)
T d1pjxa_         252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN  289 (314)
T ss_dssp             ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT
T ss_pred             EeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC
Confidence            99988887777763 46688999999998666654443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=5.2e-09  Score=79.04  Aligned_cols=206  Identities=11%  Similarity=0.029  Sum_probs=129.9

Q ss_pred             ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEE
Q 021925           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV  109 (305)
Q Consensus        33 ~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  109 (305)
                      .|.|-|.. |.....+..+...+...+|||||+.||.....   ..+.+.+...+................|+|++..++
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            46676765 44444444467778999999999999876543   247777877777776677888889999999999888


Q ss_pred             EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCC--cEEEEeCCCCcEeeeecc
Q 021925          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDA--IVRIWDTETGKLLKESDK  186 (305)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~  186 (305)
                      .........    .......     ...................++++++.++..+ .+|  .|...++..+......  
T Consensus        99 ~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~--  167 (269)
T d2hqsa1          99 FALSKTGSL----NLYVMDL-----ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT--  167 (269)
T ss_dssp             EEECTTSSC----EEEEEET-----TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC--
T ss_pred             EeeecCCcc----ceeeccc-----ccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeee--
Confidence            765422111    1111111     1112222233344445566777776555443 444  4666666655433332  


Q ss_pred             ccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCC
Q 021925          187 ETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  253 (305)
                        ..........|+|+++.++..+.++   .+.+.+...+.. .............|+|||+.|+..+..
T Consensus       168 --~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~  234 (269)
T d2hqsa1         168 --WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQ  234 (269)
T ss_dssp             --CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEE
T ss_pred             --cccccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcC
Confidence              3556677889999999988776554   455556555443 333455566788999999998766543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.35  E-value=2.1e-10  Score=88.57  Aligned_cols=232  Identities=10%  Similarity=-0.069  Sum_probs=144.4

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe-eEEE
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ-LFTF   90 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~   90 (305)
                      .+..++++|||+++++...+++|..|+.. ++ ...+......+.+++|.++|+++++...++.+..++...... ...+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            47889999999999998889998888854 43 334444667899999999999988888888888887654432 2222


Q ss_pred             -e--eCCCceEEEEecCCceEEEeCCcceeeee-----eEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           91 -N--FDSPARSVDFAVGDKLAVITTDPFMELNS-----AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        91 -~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                       .  .......+.+.+++.+++...........     ....+.........      ...........+.++. +..++
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ngi~~~~-~~l~~  179 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS------NSESVFPAANGLKRFG-NFLYV  179 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS------STTCCSCSEEEEEEET-TEEEE
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcccee------eccCcccccccccccC-Cceee
Confidence             2  34456788899999887765432211100     01111110000000      0011122344555553 23445


Q ss_pred             EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEEE
Q 021925          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVT  239 (305)
Q Consensus       163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~  239 (305)
                      +.+..+.|..++............. ........++++++|+++++...+++|..++.. ++......   .-...++++
T Consensus       180 ~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~va  257 (302)
T d2p4oa1         180 SNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA  257 (302)
T ss_dssp             EETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred             ecCCCCeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEE
Confidence            5567888999988764433222111 123345679999999988888889999999865 44333322   234578999


Q ss_pred             e---cCCCCcEEEeeCCc
Q 021925          240 M---SPLLDHVCIGEPQT  254 (305)
Q Consensus       240 ~---~~~~~~l~~~~~~~  254 (305)
                      |   ++|++.|.+++..+
T Consensus       258 fg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         258 FGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             ECCSTTTTTEEEEEECTT
T ss_pred             EcCCCCCCCEEEEECCCC
Confidence            9   67888888765543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=1.4e-08  Score=77.10  Aligned_cols=225  Identities=13%  Similarity=0.151  Sum_probs=149.7

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC------CCcceEEEEEcCC-CcEEEEE-eCCCcEEEEecCC
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG------HNGAVWCCDVSRD-SMTLITG-SADQTAKLWNVET   83 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~------~~~~v~~i~~~~~-~~~l~s~-~~dg~v~vwd~~~   83 (305)
                      ....++++++|+.+++-..+..|++||.+ ++.+..+..      .......+++.++ +..+++. +.++.|..++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            46899999999988887778899999954 776666632      1123455666554 3444433 34567777775 4


Q ss_pred             CCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE--eccCCCeeEEEEcCCCC
Q 021925           84 GAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL--KGPQGRINRAVWGPLNR  159 (305)
Q Consensus        84 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~  159 (305)
                      ++....+.  .......+++.+++.+.+.......     +  ....     ..++.+..+  ..+......+++.++++
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~-----~--~~~~-----~~g~~~~~~g~~~~~~~~~~i~~d~~g~  169 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMR-----V--IIFD-----QNGNVLHKFGCSKHLEFPNGVVVNDKQE  169 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTE-----E--EEEC-----TTSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccce-----e--eEec-----cCCceeecccccccccccceeeecccee
Confidence            66666654  2345678888888887776553211     1  1111     122333333  23456678899999998


Q ss_pred             EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceEEEEEee---CCCe
Q 021925          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTYVT---ERPV  235 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~---~~~v  235 (305)
                      .+++....+.|++||.. ++.+..+.. .+.......++++++|+++++-+. ++.|.+++ .+|+.+.++..   ....
T Consensus       170 i~v~d~~~~~V~~~d~~-G~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p  246 (279)
T d1q7fa_         170 IFISDNRAHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQC  246 (279)
T ss_dssp             EEEEEGGGTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCE
T ss_pred             EEeeeccccceeeeecC-Cceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCE
Confidence            88888888999999975 666666632 234556789999999997776544 45799998 56888777762   2357


Q ss_pred             eEEEecCCCCcEEEeeCCc
Q 021925          236 NAVTMSPLLDHVCIGEPQT  254 (305)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~  254 (305)
                      ..+++.|+|.++++ +.+.
T Consensus       247 ~~vav~~dG~l~V~-~~n~  264 (279)
T d1q7fa_         247 FDVALMDDGSVVLA-SKDY  264 (279)
T ss_dssp             EEEEEETTTEEEEE-ETTT
T ss_pred             eEEEEeCCCcEEEE-eCCC
Confidence            89999999975554 4444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.31  E-value=2e-09  Score=85.27  Aligned_cols=240  Identities=10%  Similarity=0.063  Sum_probs=138.6

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-CeeeEEe-cCCCcceEEEEEcCCCcEE--EEEeC-CCcEEEEecCC
Q 021925            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTY-RGHNGAVWCCDVSRDSMTL--ITGSA-DQTAKLWNVET   83 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~-~~~~~~v~~i~~~~~~~~l--~s~~~-dg~v~vwd~~~   83 (305)
                      ....+.-|+++|+++.|+++.. +.+..|.+.. +...... .........+.++++++.+  +++.. .+++..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            3445678999999999988764 5677776653 3322221 1123345677888888743  33322 45555554321


Q ss_pred             C-------------Ce---eEEE--eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe--
Q 021925           84 G-------------AQ---LFTF--NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--  143 (305)
Q Consensus        84 ~-------------~~---~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  143 (305)
                      .             +.   ....  .....+.++.|+|++++++++..+.    ..+..+.....   ..........  
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~----d~v~~~~~~~~---g~~~~~~~~~~~  189 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA----NKLWTHRKLAS---GEVELVGSVDAP  189 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT----TEEEEEEECTT---SCEEEEEEEECS
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCC----CEEEEEEccCC---Cceeeccceeec
Confidence            1             11   1111  1233567999999999888875422    12222222211   1111111111  


Q ss_pred             ccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCCcEe--eeecc--------------ccCCccceEEEEEcCCCCEE
Q 021925          144 GPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLL--KESDK--------------ETGHKKTITSLAKAADGSHF  206 (305)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~--~~~~~--------------~~~~~~~v~~~~~~~~~~~l  206 (305)
                      ........++|+|+++++++..+ +++|.+|++..++..  .....              ..........+.++|+|++|
T Consensus       190 ~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l  269 (365)
T d1jofa_         190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEE
Confidence            23456788999999998876664 789999998765422  11110              01122346678999999998


Q ss_pred             EEEeC------CCeEEEEEcCCceEEE---EEe----eCCCeeEEEecC-CCCcEEEeeCCcEE
Q 021925          207 LTGSL------DKSAKLWDARTLELIK---TYV----TERPVNAVTMSP-LLDHVCIGEPQTIK  256 (305)
Q Consensus       207 ~~~~~------dg~i~iwd~~~~~~~~---~~~----~~~~v~~~~~~~-~~~~l~~~~~~~~~  256 (305)
                      +++..      .+.|..|++.....+.   .+.    .......++++| +|++|+++..++..
T Consensus       270 yvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~  333 (365)
T d1jofa_         270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             EEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCe
Confidence            87643      2347777765432221   111    344568899998 89988888655443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.6e-09  Score=87.25  Aligned_cols=227  Identities=12%  Similarity=0.032  Sum_probs=132.7

Q ss_pred             EEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCC---CcceEEEEEcCCCcEEEEEe---------CCCcEEEEecCC
Q 021925           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH---NGAVWCCDVSRDSMTLITGS---------ADQTAKLWNVET   83 (305)
Q Consensus        16 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~s~~---------~dg~v~vwd~~~   83 (305)
                      ..|.+++.++.. ..+|.|.+||+.+++....+...   ...+....|+||+++++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            468888876654 56789999999988764444432   23567888999999887753         357789999998


Q ss_pred             CCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeE--EEEEeecccCCCCCceEEEEeccC---------CCe
Q 021925           84 GAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAI--HVKRIARDPADQGGESVLILKGPQ---------GRI  149 (305)
Q Consensus        84 ~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---------~~i  149 (305)
                      ++......   ....+....|+|+|+.++...+..+.+....  ....+...   .....  .+.+..         +.-
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~---g~~~~--i~nG~~d~vyeee~~~~~  175 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVST---GKEGV--IYNGLSDWLYEEEILKTH  175 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECC---CBTTT--EEEEECCHHHHHTTSSSS
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecc---cCcce--eeccccchhhhhhhcccc
Confidence            87544332   2345567899999999887765332211110  00000000   00000  111111         112


Q ss_pred             eEEEEcCCCCEEEEeeC-CCc---------------------------------EEEEeCCCCcEeeeecc---ccCCcc
Q 021925          150 NRAVWGPLNRTIISAGE-DAI---------------------------------VRIWDTETGKLLKESDK---ETGHKK  192 (305)
Q Consensus       150 ~~~~~~~~~~~l~~~~~-dg~---------------------------------i~iwd~~~~~~~~~~~~---~~~~~~  192 (305)
                      ..+.|||||++||.... +..                                 +.++|+.++........   ......
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~  255 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccc
Confidence            46789999999997643 233                                 33444433221111110   011223


Q ss_pred             ceEEEEEcCCCCEEEEEeC-C---CeEEEEEcCCceEEEEEe--eCCC----eeEEEecCCCCcEE
Q 021925          193 TITSLAKAADGSHFLTGSL-D---KSAKLWDARTLELIKTYV--TERP----VNAVTMSPLLDHVC  248 (305)
Q Consensus       193 ~v~~~~~~~~~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~--~~~~----v~~~~~~~~~~~l~  248 (305)
                      .+..+.|+|++++++.... +   ..+.++|..+++....+.  .+..    -....|+|+|+.++
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~  321 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF  321 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeE
Confidence            4778899999986665432 2   258889999998766554  2222    24568999998654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.17  E-value=1e-08  Score=81.04  Aligned_cols=224  Identities=7%  Similarity=-0.021  Sum_probs=127.6

Q ss_pred             EEEEeeC--CCceEEE--EcCCCee--eEEe-cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE---eeC
Q 021925           24 LLFSCAK--DHTPTVW--FADNGER--LGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF---NFD   93 (305)
Q Consensus        24 ~l~s~~~--dg~v~iw--~~~~~~~--~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~---~~~   93 (305)
                      .|+.|+.  .+.|..+  |.++++.  +... ......+..|+|+|++++|+++.. +.+..|.+.....+...   ...
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~   82 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence            3555643  4566555  4444443  2222 224455677999999999988765 56888877643322222   244


Q ss_pred             CCceEEEEecCCceEEEeCC--cceeee--------eeEEEEEeecccCCCCCceEEE-EeccCCCeeEEEEcCCCCEEE
Q 021925           94 SPARSVDFAVGDKLAVITTD--PFMELN--------SAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        94 ~~v~~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      .....+.++++++.+++...  ......        .......+....  ........ .......+.++.|+|+|++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~  160 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETG--KLEKNVQNYEYQENTGIHGMVFDPTETYLY  160 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTC--CEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecc--eecCcccCcccCCCCcceEEEECCCCCEEE
Confidence            56777888888885443321  111110        011111111100  00011111 112233478999999999888


Q ss_pred             EeeC-CCcEEEEeCCCCcEee---eeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEE--EE---Eee-
Q 021925          163 SAGE-DAIVRIWDTETGKLLK---ESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELI--KT---YVT-  231 (305)
Q Consensus       163 ~~~~-dg~i~iwd~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~--~~---~~~-  231 (305)
                      +++. ...|.+|+......+.   .... .........++|+|+++++.+.. .+++|.+|++...+..  ..   ... 
T Consensus       161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~-~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~  239 (365)
T d1jofa_         161 SADLTANKLWTHRKLASGEVELVGSVDA-PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI  239 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEEC-SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             EeeCCCCEEEEEEccCCCceeeccceee-cCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccc
Confidence            8765 4578888765432221   1111 12346789999999999886555 5889999998765322  21   110 


Q ss_pred             --------------CCCeeEEEecCCCCcEEEee
Q 021925          232 --------------ERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       232 --------------~~~v~~~~~~~~~~~l~~~~  251 (305)
                                    ......+.++|+|++|+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccCCccceEECCCCCEEEEEc
Confidence                          01245789999999998874

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.07  E-value=1e-07  Score=73.56  Aligned_cols=201  Identities=10%  Similarity=0.072  Sum_probs=120.1

Q ss_pred             eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc----ceEEEEEcCCCcEEEEEeC---------------C
Q 021925           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----AVWCCDVSRDSMTLITGSA---------------D   73 (305)
Q Consensus        13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~~i~~~~~~~~l~s~~~---------------d   73 (305)
                      -..++|.++|+.++++...+.|...+.+.+..........+    ..+.+++.++|+..++-..               +
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            45799999999888887777788888765443221121111    3578999999987776432               2


Q ss_pred             CcEEEEecCCCCeeEEEeeCCCceEEEEecCCc----eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec-cCCC
Q 021925           74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGR  148 (305)
Q Consensus        74 g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  148 (305)
                      |.|..++.. ++.......-.....++|++++.    .++++...    ...+...++.........+....+.. ....
T Consensus       153 G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~  227 (314)
T d1pjxa_         153 GSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGG  227 (314)
T ss_dssp             EEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT----TTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred             ceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeec----ccceEEeeccCccccceeeEEEEcccccccc
Confidence            334444432 34333333334456788988764    34443221    11222222211100000011111111 1223


Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCE-EEEEeCCCeEEEEEcC
Q 021925          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDAR  221 (305)
Q Consensus       149 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~  221 (305)
                      ...+++.++|+..++....+.|.+||.+.++....+.   ......++++|.|+++. +++.+.+|+|...++.
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~---~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE---CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            5679999999988887788999999998777666555   34467889999999875 4666678888888865

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.07  E-value=9.2e-07  Score=67.37  Aligned_cols=225  Identities=13%  Similarity=0.040  Sum_probs=144.8

Q ss_pred             EEEEEcCC-CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEee
Q 021925           14 TYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (305)
Q Consensus        14 ~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~   92 (305)
                      .+..|++. +++..+=-..+.|..||..+++.. .+. ....+.++++.+++.++++ +.+ .+.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            45678874 445555446788999998887653 333 3567889999999876664 454 599999998876544332


Q ss_pred             C-----CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE-EeeC
Q 021925           93 D-----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGE  166 (305)
Q Consensus        93 ~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~  166 (305)
                      .     ..+..+.+.++|.+.+....... ......++...      .++ ...+.......+.++|+++++.++ +-+.
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~-~~~~g~l~~~~------~g~-~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~  168 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKA-ETGAGSIYHVA------KGK-VTKLFADISIPNSICFSPDGTTGYFVDTK  168 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTC-CTTCEEEEEEE------TTE-EEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccc-cccceeEeeec------CCc-EEEEeeccCCcceeeecCCCceEEEeecc
Confidence            1     23567888899987766532111 11122222221      112 222233344567899999998665 4456


Q ss_pred             CCcEEEEeCCCCcE-----eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-CCeeEEEe
Q 021925          167 DAIVRIWDTETGKL-----LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTM  240 (305)
Q Consensus       167 dg~i~iwd~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~  240 (305)
                      .+.|..+++.....     ...+....+.......+++..+|++.++.-..+.|..||. +++.+..+..+ ..+++++|
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF  247 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred             cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEE
Confidence            78899998753211     1111111234556788999999998877777889999994 68888888844 56899999


Q ss_pred             c-CCCCcEEEee
Q 021925          241 S-PLLDHVCIGE  251 (305)
Q Consensus       241 ~-~~~~~l~~~~  251 (305)
                      - |+.+.|++.+
T Consensus       248 GG~d~~~LyvTt  259 (295)
T d2ghsa1         248 IGPDASRLLVTS  259 (295)
T ss_dssp             ESTTSCEEEEEE
T ss_pred             eCCCCCEEEEEE
Confidence            6 6777666543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.00  E-value=4.2e-07  Score=69.61  Aligned_cols=201  Identities=7%  Similarity=-0.014  Sum_probs=129.9

Q ss_pred             eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (305)
Q Consensus        43 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (305)
                      +.+..+.. ...+..+++.|||+++++...+++|..|+.. ++..........+.++++.++++++++.....     .+
T Consensus        19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~-----~~   91 (302)
T d2p4oa1          19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNAD-----SI   91 (302)
T ss_dssp             EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTT-----SC
T ss_pred             cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCc-----eE
Confidence            44445542 2358899999999999998889999888855 55555556788899999999999877764321     11


Q ss_pred             EEEEeecccCCCCCceEE-EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeecc-------ccCCccce
Q 021925          123 HVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-------ETGHKKTI  194 (305)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~v  194 (305)
                      ........    ...... ...........+++.++++++++.+.++.+..+|...+........       ........
T Consensus        92 ~~~~~~~~----~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1          92 PVVSLVKS----DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  167 (302)
T ss_dssp             EEEEEECT----TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             EEEEeccc----ccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccc
Confidence            12221111    111111 1123345678899999999988888889999999887653322211       01122345


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE---EEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          195 TSLAKAADGSHFLTGSLDKSAKLWDARTLELI---KTYVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       195 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      ..+.++. +.++++.+..+.|+.++.......   ..+........++++++|++.++...++.
T Consensus       168 ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~  230 (302)
T d2p4oa1         168 NGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNS  230 (302)
T ss_dssp             EEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCC
T ss_pred             ccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCc
Confidence            6666654 345666777899999987754332   22234556788999999987666655554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=1.9e-07  Score=69.98  Aligned_cols=195  Identities=9%  Similarity=-0.014  Sum_probs=122.6

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE-
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-   90 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-   90 (305)
                      ....++++++|+++++....+.+++++..+...+..... .....++++.++++.+++-..+..+..++.......... 
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~  136 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF  136 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeeee
Confidence            457789999998887777666777665444444433332 345789999999988777666777777776544322211 


Q ss_pred             eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcE
Q 021925           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (305)
Q Consensus        91 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  170 (305)
                      ........+++.+++.++++.....       .+......    .................+++.++++++++....+.|
T Consensus       137 ~~~~~p~~i~~~~~g~~~v~~~~~~-------~i~~~d~~----~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i  205 (260)
T d1rwia_         137 TGLNDPDGVAVDNSGNVYVTDTDNN-------RVVKLEAE----SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQV  205 (260)
T ss_dssp             CSCCSCCEEEECTTCCEEEEEGGGT-------EEEEECTT----TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEE
T ss_pred             cccCCcceeeecCCCCEeeeccccc-------cccccccc----cceeeeeeccccCCCccceeeeeeeeeeeecCCCEE
Confidence            1234567889999888766554321       11111110    111111112344567889999999988888778889


Q ss_pred             EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (305)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  221 (305)
                      ..++..... ...+..  ..-.....|+++++|+++++-..+++|+.++..
T Consensus       206 ~~~~~~~~~-~~~~~~--~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         206 VKLLAGSTT-STVLPF--TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEECTTCSC-CEECCC--CSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EEEeCCCCe-EEEEcc--CCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            988875443 222211  233467899999999887776777777766544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.86  E-value=1.8e-06  Score=65.00  Aligned_cols=95  Identities=14%  Similarity=0.039  Sum_probs=67.9

Q ss_pred             EEcCC--CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-C-----CcEEEEecCCCCeeE
Q 021925           17 KYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-D-----QTAKLWNVETGAQLF   88 (305)
Q Consensus        17 ~~~~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d-----g~v~vwd~~~~~~~~   88 (305)
                      ..+||  |+.+|-.+ +|.|.+.|+.+++.. .+..+.+.+...+|||||+.||.... +     ..|.+.+..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45788  99888765 567888899887754 56667788899999999999886532 2     237777777776543


Q ss_pred             EEe-------eCCCceEEEEecCCceEEEeCC
Q 021925           89 TFN-------FDSPARSVDFAVGDKLAVITTD  113 (305)
Q Consensus        89 ~~~-------~~~~v~~~~~~~~~~~~~~~~~  113 (305)
                      ...       .........|+|+++.++....
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            322       1234567889999998887654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.83  E-value=6.5e-06  Score=63.31  Aligned_cols=197  Identities=10%  Similarity=-0.034  Sum_probs=118.5

Q ss_pred             cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEe
Q 021925           49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI  127 (305)
Q Consensus        49 ~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (305)
                      ......+..++|.++|++.++-...+.|..|+.++++...... .......+++.++++++++......   ....+...
T Consensus        36 ~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~---~~~~i~~~  112 (319)
T d2dg1a1          36 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFK---STGGIFAA  112 (319)
T ss_dssp             ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSS---SCCEEEEE
T ss_pred             ccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCc---cceeEEEE
Confidence            3334456789999999877777778999999988776555443 5567789999999988776543211   11111111


Q ss_pred             ecccCCCCCceEEEEe--ccCCCeeEEEEcCCCCEEEEeeC------CCcEEEEeCCCCcEeeeeccccCCccceEEEEE
Q 021925          128 ARDPADQGGESVLILK--GPQGRINRAVWGPLNRTIISAGE------DAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (305)
Q Consensus       128 ~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  199 (305)
                      ...    .........  ........+++.|+|++.++...      .+.+..++...+. +..+.   ..-...+.++|
T Consensus       113 ~~~----~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~---~~~~~pnGia~  184 (319)
T d2dg1a1         113 TEN----GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPII---QNISVANGIAL  184 (319)
T ss_dssp             CTT----SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEE---EEESSEEEEEE
T ss_pred             cCC----CceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEe---eccceeeeeee
Confidence            111    111111111  11234678999999986665432      2346666654333 23222   12345678999


Q ss_pred             cCCCCEE-EEEeCCCeEEEEEcCCc-e---EEE-EEe----eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          200 AADGSHF-LTGSLDKSAKLWDARTL-E---LIK-TYV----TERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       200 ~~~~~~l-~~~~~dg~i~iwd~~~~-~---~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      +|+++.| ++-+..++|+.||+... .   ... ...    .......+++.++|++.++....+.+
T Consensus       185 s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V  251 (319)
T d2dg1a1         185 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV  251 (319)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             ccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEE
Confidence            9999866 45566889999997632 1   111 111    12235679999999877766666653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.78  E-value=5.3e-06  Score=62.50  Aligned_cols=179  Identities=12%  Similarity=0.115  Sum_probs=116.4

Q ss_pred             CCCceEEEEcCCCeeeEEec-CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe---eCCCceEEEEecCC
Q 021925           30 KDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN---FDSPARSVDFAVGD  105 (305)
Q Consensus        30 ~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~  105 (305)
                      .++.|..++. +++....+. ........+++.+++..+++....+.+.+++. .++.+..+.   .......+++.+++
T Consensus        91 ~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g  168 (279)
T d1q7fa_          91 PTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQ  168 (279)
T ss_dssp             GGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSS
T ss_pred             Cccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccce
Confidence            3445555553 455555553 23456788999999988888777788888885 466666664   33456678888888


Q ss_pred             ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe--ccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCCcEee
Q 021925          106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLK  182 (305)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~  182 (305)
                      .++++....     ..+...+.       .++.+..+.  +.......+++.|+|+.+++-.. ++.|.+++. +++.+.
T Consensus       169 ~i~v~d~~~-----~~V~~~d~-------~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~  235 (279)
T d1q7fa_         169 EIFISDNRA-----HCVKVFNY-------EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS  235 (279)
T ss_dssp             EEEEEEGGG-----TEEEEEET-------TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred             eEEeeeccc-----cceeeeec-------CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEE
Confidence            776665432     22222221       223333332  34455788999999997776543 457999984 577776


Q ss_pred             eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE
Q 021925          183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (305)
Q Consensus       183 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  225 (305)
                      .+... ........+++.|+|.++ +++.+++|++|......+
T Consensus       236 ~~~~~-~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         236 ALESK-VKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEEES-SCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCCCC
T ss_pred             EEeCC-CCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeeecC
Confidence            66421 223457889999999754 456789999999876543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.77  E-value=3.4e-07  Score=69.03  Aligned_cols=208  Identities=10%  Similarity=-0.046  Sum_probs=110.6

Q ss_pred             ceEecccccceEEEEEcCCCCEEEEeeC-C-----CceEEEEcCCCeeeEEec------CCCcceEEEEEcCCCcEEEEE
Q 021925            3 PILMKGHERPLTYLKYNKDGDLLFSCAK-D-----HTPTVWFADNGERLGTYR------GHNGAVWCCDVSRDSMTLITG   70 (305)
Q Consensus         3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~-d-----g~v~iw~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~l~s~   70 (305)
                      +..|..+.+.+...+|||||+.||.... +     ..|.+.+..+++......      ..........|+|+|+.|+..
T Consensus        33 ~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          33 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            4557777788999999999999986532 2     246777777776543221      112345778899999988875


Q ss_pred             eCC------CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee-------eeeEEEEEeecccCCCCCc
Q 021925           71 SAD------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-------NSAIHVKRIARDPADQGGE  137 (305)
Q Consensus        71 ~~d------g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  137 (305)
                      ...      ..+...+...+...  ......... .+.+++...+.........       ..........       ..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  182 (281)
T d1k32a2         113 DAMQPFSSMTCLYRVENDGINFV--PLNLGPATH-ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVN-------SG  182 (281)
T ss_dssp             CTTSSSTTCCEEEEEEGGGTEEE--ECCSCSCSE-EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEE-------TT
T ss_pred             EccCCCccceeeeeecCCCceeE--EecCCccce-eeecCCCeEEEeeccccceeeeeccCCcceeeeecc-------cc
Confidence            332      22444555444322  122222233 3444444444332211000       0000000000       11


Q ss_pred             eEEEEeccCCCeeEEEEcCCCCEEEEeeC--CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeE
Q 021925          138 SVLILKGPQGRINRAVWGPLNRTIISAGE--DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA  215 (305)
Q Consensus       138 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  215 (305)
                      ................++++.. +.....  ...|.++|+.+++.. .+..  .....+  ..|+|||+.|+.. .++.|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~-~lt~--~~~~~~--~~~SpDG~~I~f~-~~~~l  255 (281)
T d1k32a2         183 AFKKIVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLR-KHTS--FTDYYP--RHLNTDGRRILFS-KGGSI  255 (281)
T ss_dssp             EEEEEECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCE-ECCC--CCSSCE--EEEEESSSCEEEE-ETTEE
T ss_pred             ceeeccCCccccceeeeecccc-ceecccccccceEEEeCCCCceE-Eeec--CCCccc--ccCcCCCCEEEEE-eCCEE
Confidence            1222233334444555665432 222222  346888898766543 3321  122233  4689999988764 47889


Q ss_pred             EEEEcCCceEEE
Q 021925          216 KLWDARTLELIK  227 (305)
Q Consensus       216 ~iwd~~~~~~~~  227 (305)
                      +++|+.+++...
T Consensus       256 ~~~d~~~g~~~~  267 (281)
T d1k32a2         256 YIFNPDTEKIEK  267 (281)
T ss_dssp             EEECTTTCCEEE
T ss_pred             EEEECCCCCEEE
Confidence            999998887654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.68  E-value=2.7e-05  Score=59.03  Aligned_cols=189  Identities=14%  Similarity=0.057  Sum_probs=122.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC----CCcceEEEEEcCCCcEEEEEeC----CCcEEEEec
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG----HNGAVWCCDVSRDSMTLITGSA----DQTAKLWNV   81 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~s~~~----dg~v~vwd~   81 (305)
                      ...+.++++.++|.++++ +.+ .+.++|..+++.......    ....+..+.+.|+|++.++...    .+.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            456888999999877765 444 588899988875433221    1236889999999987665432    234567777


Q ss_pred             CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCc--eEEEEeccCCCeeEEEEcCCCC
Q 021925           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE--SVLILKGPQGRINRAVWGPLNR  159 (305)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~  159 (305)
                      ..++.......-.....++++++++.+..+....    ..+...++.........+  ......+..+....+++..+|+
T Consensus       136 ~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~----~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn  211 (295)
T d2ghsa1         136 AKGKVTKLFADISIPNSICFSPDGTTGYFVDTKV----NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH  211 (295)
T ss_dssp             ETTEEEEEEEEESSEEEEEECTTSCEEEEEETTT----CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred             cCCcEEEEeeccCCcceeeecCCCceEEEeeccc----ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC
Confidence            7776555555555667899999998776654321    222223332211111111  1222334455678899999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc-CCCCEEEE
Q 021925          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA-ADGSHFLT  208 (305)
Q Consensus       160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~  208 (305)
                      +.++.-..+.|..||. .++.+..+..   ....+++++|- ++.+.|+.
T Consensus       212 lWva~~~~g~V~~~dp-~G~~~~~i~l---P~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         212 IWNARWGEGAVDRYDT-DGNHIARYEV---PGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             EEEEEETTTEEEEECT-TCCEEEEEEC---SCSBEEEEEEESTTSCEEEE
T ss_pred             EEeeeeCCCceEEecC-CCcEeeEecC---CCCceEEEEEeCCCCCEEEE
Confidence            8877777889999995 5888888863   33568999996 56665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.5e-05  Score=63.26  Aligned_cols=178  Identities=8%  Similarity=-0.025  Sum_probs=97.6

Q ss_pred             ceEEEEEcCCCcEEEEEeC-C---CcEEEEecCCCCeeEEEee--CC----CceEEEEecCCceEEEeCCcceeeeeeEE
Q 021925           54 AVWCCDVSRDSMTLITGSA-D---QTAKLWNVETGAQLFTFNF--DS----PARSVDFAVGDKLAVITTDPFMELNSAIH  123 (305)
Q Consensus        54 ~v~~i~~~~~~~~l~s~~~-d---g~v~vwd~~~~~~~~~~~~--~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (305)
                      .+..+.|+|+++.++.... +   ..+.++|..+++.......  +.    .-....|++++..++........-.....
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly  335 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY  335 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceE
Confidence            4678899999876655322 2   3588889999987665542  22    22456788888754332100000011111


Q ss_pred             EEEeecccCCCCCceEEEEeccCCCeeEE-EEcCCCCEEE-EeeCCC----cEEEEeCCCCcEeeeeccccCCccceEEE
Q 021925          124 VKRIARDPADQGGESVLILKGPQGRINRA-VWGPLNRTII-SAGEDA----IVRIWDTETGKLLKESDKETGHKKTITSL  197 (305)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~-~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  197 (305)
                      ...+........+.....+....-.|..+ .|+++++.+. ++..++    .++-.++..+.....+...........++
T Consensus       336 ~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~  415 (465)
T d1xfda1         336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSA  415 (465)
T ss_dssp             EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEE
T ss_pred             EEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEE
Confidence            11111111111222233333444455554 6888877665 444332    24444554443333333222345567789


Q ss_pred             EEcCCCCEEEEEeCC---CeEEEEEcCCceEEEEEee
Q 021925          198 AKAADGSHFLTGSLD---KSAKLWDARTLELIKTYVT  231 (305)
Q Consensus       198 ~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~  231 (305)
                      .|||++++++..+..   -.+.+++..+++.+..+..
T Consensus       416 ~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~  452 (465)
T d1xfda1         416 SFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLET  452 (465)
T ss_dssp             EECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEEC
T ss_pred             EECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEcC
Confidence            999999998754432   4688999888988888763

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.48  E-value=0.00013  Score=56.87  Aligned_cols=233  Identities=11%  Similarity=0.045  Sum_probs=144.2

Q ss_pred             EEEEcC---CCCEEEEee-CCCceEEEEcCCCeeeEEecC-CCcceEEEEEcC--CCcEEEEEeCC--------------
Q 021925           15 YLKYNK---DGDLLFSCA-KDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSR--DSMTLITGSAD--------------   73 (305)
Q Consensus        15 ~~~~~~---~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~--~~~~l~s~~~d--------------   73 (305)
                      .+++..   ||++|+... .++.|.+-|+.+.+..+.+.- ....+..+...+  +..+++..+.+              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            555654   889888765 578999999999987664432 344567776654  55677776653              


Q ss_pred             ----CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcce---------------------------------
Q 021925           74 ----QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM---------------------------------  116 (305)
Q Consensus        74 ----g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------------------------  116 (305)
                          +.+.+.|.++.+....+..+.....+.++++|+++++.+-+.-                                 
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                2367889999999998888888999999999999988753110                                 


Q ss_pred             eeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCCcEe--------eeeccc
Q 021925          117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLL--------KESDKE  187 (305)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~--------~~~~~~  187 (305)
                      ...+.+.+-+...   .........+.. ......+..+|||+++++++. +.++.++|++.-...        ..+...
T Consensus       249 ~eingV~VVD~~~---~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e  324 (459)
T d1fwxa2         249 QELNGVKVVDGRK---EASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  324 (459)
T ss_dssp             EEETTEEEEECSG---G--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred             EEeCCceeecccc---cCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence            0001111111110   011112222222 233567899999999887764 899999999642111        111101


Q ss_pred             cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----------eEEEEEeeCCCeeEE------EecCCCCcEEEee
Q 021925          188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----------ELIKTYVTERPVNAV------TMSPLLDHVCIGE  251 (305)
Q Consensus       188 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~v~~~------~~~~~~~~l~~~~  251 (305)
                      ....-....-+|+..|.-..+---|..|.-|++...          ..+..+...-.+-.+      ...|+|++|++..
T Consensus       325 ~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         325 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             cccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            112334556788888866666668999999998532          333444322222222      3478999998875

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.21  E-value=0.00044  Score=51.03  Aligned_cols=232  Identities=8%  Similarity=-0.022  Sum_probs=147.9

Q ss_pred             EEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-CeeEEEe--
Q 021925           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFN--   91 (305)
Q Consensus        15 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~--   91 (305)
                      +.-.+|..+.||--+ ..++.++|+++.+.++.+. ..++|.--.|..+. .|+-.+. ..|.-|+++.. ++.+.+.  
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~~-~L~lVT~-taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSSS-EEEEECS-SEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecCCC-EEEEEcC-CceEEEcccCCCCchhhhhhc
Confidence            344688888888766 5589999999999998887 45678777887554 4554444 57999999543 3555554  


Q ss_pred             ---eCCCceEEEEecCCceEEEeCC--cceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC---CEEEE
Q 021925           92 ---FDSPARSVDFAVGDKLAVITTD--PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN---RTIIS  163 (305)
Q Consensus        92 ---~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~  163 (305)
                         .+..+..-..+++.++++..+=  ......+.+.++...       .+..+.+++|......+....+.   +.++.
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f  215 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-------RKVSQPIEGHAASFAQFKMEGNAEESTLFCF  215 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-------TTEEEEECCSEEEEEEECCTTCSSCEEEEEE
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec-------cCcCccccceeeeeEEEEcCCCCCCceEEEE
Confidence               2345666677778887765431  112234555555443       24567778887666555544222   23333


Q ss_pred             ee---CCCcEEEEeCCCCc---E------eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-
Q 021925          164 AG---EDAIVRIWDTETGK---L------LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-  230 (305)
Q Consensus       164 ~~---~dg~i~iwd~~~~~---~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-  230 (305)
                      +.   ..++++|.++....   +      +..+........-.-++..++.-..+..-+.-|.+.++|++++.++..-+ 
T Consensus       216 a~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRI  295 (327)
T d1utca2         216 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI  295 (327)
T ss_dssp             EEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeec
Confidence            22   23689999986521   1      11111122334556788889888899999999999999999999998877 


Q ss_pred             eCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925          231 TERPVNAVTMSPLLDHVCIGEPQTIKF  257 (305)
Q Consensus       231 ~~~~v~~~~~~~~~~~l~~~~~~~~~~  257 (305)
                      ...+|-..+-+.+..-+++-...|...
T Consensus       296 s~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         296 SGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             CCCceEEeccCCCCceEEEECCCCeEE
Confidence            566665445444433444444566543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.20  E-value=0.00032  Score=58.14  Aligned_cols=81  Identities=15%  Similarity=-0.018  Sum_probs=56.2

Q ss_pred             CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE--EEecCCCC
Q 021925          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPLLD  245 (305)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~  245 (305)
                      |.|.-+|+.+++.+.+........+.+    ..-.+.++++|+.||.++.+|.++|+.+.++.....+.+  +.+..+|+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~----l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGT----LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBC----EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcce----eEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence            678899999999887765221111111    122355788899999999999999999999986555543  66667886


Q ss_pred             -cEEEeeC
Q 021925          246 -HVCIGEP  252 (305)
Q Consensus       246 -~l~~~~~  252 (305)
                       ||++..+
T Consensus       520 qYi~v~~g  527 (571)
T d2ad6a1         520 QYIGSMYG  527 (571)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence             5655443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=0.0011  Score=48.80  Aligned_cols=224  Identities=9%  Similarity=0.018  Sum_probs=136.2

Q ss_pred             ecccccceEEEEEcCCCCEEEEe-eCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCC
Q 021925            6 MKGHERPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVET   83 (305)
Q Consensus         6 l~~h~~~v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~   83 (305)
                      +..+...+.+++|++..+.|+-+ ..++.|+..++........+......+.++++..-+..|+ +-...+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            33445567789999877766655 4567788888776555444444445688999987555555 445578899999876


Q ss_pred             CCeeEEEee-CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925           84 GAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (305)
Q Consensus        84 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (305)
                      ......... ...+..+++.|...+++....+.    ....++.....   . ..........-.....+++++.++.|.
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~----~~~~I~r~~~d---G-~~~~~i~~~~~~~P~glaiD~~~~~lY  182 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMD---G-TNRRILAQDNLGLPNGLTFDAFSSQLC  182 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCS----SSCEEEEEETT---S-CCCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCC----CCcEEEEecCC---C-CCceeeeeecccccceEEEeecCcEEE
Confidence            654433332 35678999999777776553211    11122222211   1 112222333345668899998888776


Q ss_pred             Ee-eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEE
Q 021925          163 SA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVT  239 (305)
Q Consensus       163 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~  239 (305)
                      .+ ...+.|...|+........+.   +. .....+++. ++.+..+-...+.|...|..+++.+..+.  .......++
T Consensus       183 w~d~~~~~I~~~~~~g~~~~~v~~---~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~  257 (263)
T d1npea_         183 WVDAGTHRAECLNPAQPGRRKVLE---GL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGIT  257 (263)
T ss_dssp             EEETTTTEEEEEETTEEEEEEEEE---CC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEE
T ss_pred             EEeCCCCEEEEEECCCCCeEEEEC---CC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEE
Confidence            55 456889999987544332232   22 234567775 34444455567889999999998877664  333444555


Q ss_pred             ecC
Q 021925          240 MSP  242 (305)
Q Consensus       240 ~~~  242 (305)
                      ..+
T Consensus       258 v~~  260 (263)
T d1npea_         258 IAL  260 (263)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.95  E-value=0.00015  Score=60.24  Aligned_cols=82  Identities=18%  Similarity=0.084  Sum_probs=56.5

Q ss_pred             CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE--EEecCCCC
Q 021925          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPLLD  245 (305)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~  245 (305)
                      |.+.-||+.+++.+.+.+......+..  +  +-.+.++++|+.||.++.+|.++|+.+.++.....+..  +.+..+|+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~--l--stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGT--L--TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCE--E--EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCce--E--EEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            568889999998887775321111111  2  23567888899999999999999999999985554433  55666776


Q ss_pred             -cEEEeeCC
Q 021925          246 -HVCIGEPQ  253 (305)
Q Consensus       246 -~l~~~~~~  253 (305)
                       +|++.++.
T Consensus       533 QYv~v~~G~  541 (573)
T d1kb0a2         533 QYVSVAVGW  541 (573)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEeCC
Confidence             55555443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.95  E-value=0.00063  Score=56.18  Aligned_cols=83  Identities=14%  Similarity=0.104  Sum_probs=57.3

Q ss_pred             CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE--EEecCCCC
Q 021925          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPLLD  245 (305)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~  245 (305)
                      |.+.-+|+.+++.+.+........+.    ...-.+.+++.|+.||.++.+|.++|+.+.+++....+..  +.+..+|+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg----~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGk  513 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGG----TLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR  513 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCC----EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCc----eeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            67888999999988877532111111    1223456888899999999999999999999985554432  55667785


Q ss_pred             -cEEEeeCCc
Q 021925          246 -HVCIGEPQT  254 (305)
Q Consensus       246 -~l~~~~~~~  254 (305)
                       +|++..+.+
T Consensus       514 qyv~v~aG~g  523 (560)
T d1kv9a2         514 QYVAIMAGWG  523 (560)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEeCCC
Confidence             566554433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.82  E-value=0.003  Score=52.31  Aligned_cols=81  Identities=19%  Similarity=0.166  Sum_probs=57.4

Q ss_pred             CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCee--EEEecCCC
Q 021925          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN--AVTMSPLL  244 (305)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~  244 (305)
                      .|.|.-+|+.+++.+.+....    .++..-..+..+.++++|+.||.++.+|.++|+.+.+++.+..+.  -+.+..+|
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~----~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G  540 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG  540 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             CCeEEEEcCCCCcEEeecCCC----CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            367888999999988877632    222211123356688889999999999999999999998554443  26777888


Q ss_pred             C-cEEEee
Q 021925          245 D-HVCIGE  251 (305)
Q Consensus       245 ~-~l~~~~  251 (305)
                      + ++++..
T Consensus       541 ~qYv~i~a  548 (582)
T d1flga_         541 EQYLGVTV  548 (582)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            5 565544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.79  E-value=0.0044  Score=48.20  Aligned_cols=232  Identities=8%  Similarity=-0.030  Sum_probs=129.7

Q ss_pred             EEEeeCCCceEEEEcCCCeeeEEecCC---------------------------------------Ccce--EEEEEcC-
Q 021925           25 LFSCAKDHTPTVWFADNGERLGTYRGH---------------------------------------NGAV--WCCDVSR-   62 (305)
Q Consensus        25 l~s~~~dg~v~iw~~~~~~~~~~~~~~---------------------------------------~~~v--~~i~~~~-   62 (305)
                      +.+|+..|.|+|+-+.+++.++.+.-.                                       .+..  -.+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            567889999999999988877765200                                       0111  1344433 


Q ss_pred             --CCcEEEEEe-CCCcEEEEecCCCCeeEEEe--eCCCceEEEEec--CCceEEEeCCcceeeee-------eEEEEEee
Q 021925           63 --DSMTLITGS-ADQTAKLWNVETGAQLFTFN--FDSPARSVDFAV--GDKLAVITTDPFMELNS-------AIHVKRIA  128 (305)
Q Consensus        63 --~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~  128 (305)
                        ||++|.+.. .+.+|.+-|+++.++...+.  ....+..+...+  ...+++..+....-+..       ........
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              678877665 48899999999999877555  445566666544  44555554432211110       00011111


Q ss_pred             cccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC--------------------------------------cE
Q 021925          129 RDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA--------------------------------------IV  170 (305)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------------------------------~i  170 (305)
                      ........+...... -.+....+.++|+|+++++.+.+.                                      .+
T Consensus       176 t~ID~~tm~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         176 TAVDADKWEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEETTTTEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEecCCceEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            001112222222222 133566789999999988876432                                      12


Q ss_pred             EEEeCCCC---cEeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCce------------EEEEEeeCCC
Q 021925          171 RIWDTETG---KLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE------------LIKTYVTERP  234 (305)
Q Consensus       171 ~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~~~~~~~  234 (305)
                      .+-|.+..   ..++.+.    -......+..+|||+++++++ .+.++.++|+++.+            ...+...+-.
T Consensus       255 ~VVD~~~~~~~~v~~yIP----VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg  330 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  330 (459)
T ss_dssp             EEEECSGG--CSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC
T ss_pred             eeecccccCCcceeEEEe----cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC
Confidence            33343321   1111121    123345678999999977655 58999999997432            1222223444


Q ss_pred             eeEEEecCCCCcEEEeeCCcEEEEEEe
Q 021925          235 VNAVTMSPLLDHVCIGEPQTIKFMLLV  261 (305)
Q Consensus       235 v~~~~~~~~~~~l~~~~~~~~~~~~~~  261 (305)
                      ...-+|+..|....+---++....|.+
T Consensus       331 PLht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         331 PLHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             ccccccCCCceEEEEeeccceEEEEec
Confidence            566788888854444456666544444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.79  E-value=0.003  Score=49.16  Aligned_cols=102  Identities=12%  Similarity=0.129  Sum_probs=65.2

Q ss_pred             ceEEEEEcCCCCEEEEeeCCC-----------ceEEEEcCCCeeeE--Ee-cCCCcceEEEEEcCCCcEEEEEeCC-CcE
Q 021925           12 PLTYLKYNKDGDLLFSCAKDH-----------TPTVWFADNGERLG--TY-RGHNGAVWCCDVSRDSMTLITGSAD-QTA   76 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg-----------~v~iw~~~~~~~~~--~~-~~~~~~v~~i~~~~~~~~l~s~~~d-g~v   76 (305)
                      ++.......+|+.++.|+.+.           .+.+||..+++...  .. ..+.......++.++++.++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            334444556888888887531           36789998875322  12 2233334556788999988888764 589


Q ss_pred             EEEecCCCCeeEEEe--eCCCceEEEEecCCceEEEeCC
Q 021925           77 KLWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTD  113 (305)
Q Consensus        77 ~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~  113 (305)
                      .+||..+..-...-.  ....-...+..+++++++.+..
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~  139 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGS  139 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCC
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccc
Confidence            999988765432221  2233456777788888887764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.61  E-value=0.0099  Score=47.09  Aligned_cols=216  Identities=11%  Similarity=0.054  Sum_probs=107.8

Q ss_pred             cccceEEEEEcCCCCEEEEee-C----CCceEEEEcCCCeeeE-EecCCCcceEEEEEcCCCcEEEEEeCC---------
Q 021925            9 HERPLTYLKYNKDGDLLFSCA-K----DHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSAD---------   73 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~-~----dg~v~iw~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~d---------   73 (305)
                      +.-.+...++||+++++|.+- .    ...+++.|+.+++.+. .+.  ......++|.+|++.|+-...+         
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCCCEEEEEEeccccCccccc
Confidence            333456778899999988542 2    2479999999998764 222  1122568899999877644322         


Q ss_pred             -------CcEEEEecCCCCee--EEEee---CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC--CCCceE
Q 021925           74 -------QTAKLWNVETGAQL--FTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD--QGGESV  139 (305)
Q Consensus        74 -------g~v~vwd~~~~~~~--~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  139 (305)
                             ..|..+.+.+....  ..+..   ......+..+++++++++...............+.......  ......
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  280 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence                   25777777665432  33332   22345566788888877654221111111222222211111  011112


Q ss_pred             EEEeccCCCeeEEEEcCCCCEEEEee---CCCcEEEEeCCCCcEe--eeeccccCCccceEEEEEcCCCCEEEEE-eCCC
Q 021925          140 LILKGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLL--KESDKETGHKKTITSLAKAADGSHFLTG-SLDK  213 (305)
Q Consensus       140 ~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg  213 (305)
                      ...........-+. +.++.+++...   .++.|...++......  ..+-  ..+...+..-.+...+.+|+.. -.++
T Consensus       281 ~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi--~~~~~~~~~~~~~~~~~~lvl~~~~~~  357 (430)
T d1qfma1         281 KLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--PEHEKDVLEWVACVRSNFLVLCYLHDV  357 (430)
T ss_dssp             EEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEE--CCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             EeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEe--cccCcceeeeEEEEECCEEEEEEEcCC
Confidence            22222222332222 22233333332   2466777777653221  1121  1233444433333334455544 4554


Q ss_pred             --eEEEEEcCCceEEEEE
Q 021925          214 --SAKLWDARTLELIKTY  229 (305)
Q Consensus       214 --~i~iwd~~~~~~~~~~  229 (305)
                        .|++++..+++.....
T Consensus       358 ~~~l~v~~~~~~~~~~~~  375 (430)
T d1qfma1         358 KNTLQLHDLATGALLKIF  375 (430)
T ss_dssp             EEEEEEEETTTCCEEEEE
T ss_pred             EeEEEEEECCCCcEEEec
Confidence              4888998877665443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.34  E-value=0.018  Score=43.85  Aligned_cols=186  Identities=8%  Similarity=0.119  Sum_probs=96.2

Q ss_pred             eEEEEEcCCCcEEEEEeC------------CCcEEEEecCCCCee-EEEe-eCC-------CceEEEE--ecCCce-EEE
Q 021925           55 VWCCDVSRDSMTLITGSA------------DQTAKLWNVETGAQL-FTFN-FDS-------PARSVDF--AVGDKL-AVI  110 (305)
Q Consensus        55 v~~i~~~~~~~~l~s~~~------------dg~v~vwd~~~~~~~-~~~~-~~~-------~v~~~~~--~~~~~~-~~~  110 (305)
                      .-+|+..|+|..+++++.            .|.+.++|+++.+.. ..+. ...       ....+.+  .+++.. +++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            456778888877766542            488999998765432 2222 111       2233333  223332 222


Q ss_pred             eCCcceeeeeeEEEEEeecccCCCCCceEEEEe-ccCCCeeEEEEcCCCCEEEEee-----------------CCCcEEE
Q 021925          111 TTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAG-----------------EDAIVRI  172 (305)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~i  172 (305)
                      ....  .....+.+..+....  .....+..+. ......++++...++..++|-.                 ..+.+.-
T Consensus       117 vnH~--~~~~~ieif~~~~~~--~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~  192 (340)
T d1v04a_         117 VNHP--GSSSTVEVFKFQEEE--KSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  192 (340)
T ss_dssp             EECS--TTCCEEEEEEEETTT--TEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred             Eecc--CCCceeEEEEEeCCC--CeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence            2110  012233444443211  0111112222 2234578888888888777721                 1123444


Q ss_pred             EeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCce---EEEEEeeCCCeeEEEecCCCCcEE
Q 021925          173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLE---LIKTYVTERPVNAVTMSPLLDHVC  248 (305)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~  248 (305)
                      ||.  ++.....    ..-...+.++++||+++|+. -+..++|+.|++....   ..........+-.+.+.+.+..+.
T Consensus       193 ~~~--~~~~~~~----~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lw  266 (340)
T d1v04a_         193 YSP--NDVRVVA----EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLW  266 (340)
T ss_dssp             ECS--SCEEEEE----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEE
T ss_pred             EcC--CceEEEc----CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEE
Confidence            443  3322222    23456789999999987654 4567889999987443   222333555667788876444444


Q ss_pred             Ee
Q 021925          249 IG  250 (305)
Q Consensus       249 ~~  250 (305)
                      ++
T Consensus       267 va  268 (340)
T d1v04a_         267 VG  268 (340)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.32  E-value=0.031  Score=46.19  Aligned_cols=81  Identities=19%  Similarity=0.127  Sum_probs=55.2

Q ss_pred             CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCee--EEEecCCCC
Q 021925          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN--AVTMSPLLD  245 (305)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~  245 (305)
                      |.|.-||+.+++.+.+....    .+...-..+..+.+++.|+.||.++.+|.++|+.+.++.....+.  -+.+..+|+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~----~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER----FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ceEEEEeCCCCceecccCCC----CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCE
Confidence            67899999999987765421    111111122346688889999999999999999999998544332  245566776


Q ss_pred             -cEEEeeC
Q 021925          246 -HVCIGEP  252 (305)
Q Consensus       246 -~l~~~~~  252 (305)
                       ||++..+
T Consensus       529 QYvav~~G  536 (596)
T d1w6sa_         529 QYVAIYYG  536 (596)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence             5655433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.017  Score=42.32  Aligned_cols=211  Identities=11%  Similarity=-0.032  Sum_probs=120.0

Q ss_pred             cccceEEEEEcCCCCEEEEee-CCCceEEEEcCCC----eeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecC
Q 021925            9 HERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVE   82 (305)
Q Consensus         9 h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~   82 (305)
                      ....+.+++|++..+.|+-+. .++.|.--++...    .....+......+.++++.+.+..|. +-...++|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            344567888888776666543 3455655554321    11122232334567788877555554 44556789999988


Q ss_pred             CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (305)
Q Consensus        83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (305)
                      ......... .......+++.|....++....+.     ...+......    ...........-.....+++.+.++.|
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~-----~~~I~r~~~d----Gs~~~~l~~~~~~~p~gl~iD~~~~~l  178 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PAKIKKGGLN----GVDIYSLVTENIQWPNGITLDLLSGRL  178 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----SCEEEEEETT----SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCC-----CcceeEeccC----CCceecccccccceeeEEEeeccccEE
Confidence            666544444 345678899998666655543211     1112222111    112222223334567889999988777


Q ss_pred             EEe-eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925          162 ISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (305)
Q Consensus       162 ~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  230 (305)
                      ..+ ...+.|...|+........... .........+++. ++.+..+-..++.|+..+..+++....+.
T Consensus       179 Yw~d~~~~~I~~~~~dG~~~~~~~~~-~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         179 YWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEecCCcCEEEEEECCCCCEEEEEeC-CCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            765 4568899999865433222221 1223345667776 33444454567888888888877665554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.07  E-value=0.055  Score=44.29  Aligned_cols=228  Identities=13%  Similarity=0.082  Sum_probs=128.1

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecCCCc-ceEEEEEcC---CCcEEEEEeC------CCcEEEEecCCCCeeEEEee
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNG-AVWCCDVSR---DSMTLITGSA------DQTAKLWNVETGAQLFTFNF   92 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~v~~i~~~~---~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~   92 (305)
                      ..++.+..|+.|.-.|..+|+.+........ .-..+.-.|   ++ .++.+..      .|.|.-+|.++++.+.++..
T Consensus       118 ~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeeee
Confidence            4577788899999999999998877653221 101111111   33 3444332      36799999999999998862


Q ss_pred             CC-------------------------------C-ceEEEEecCCceEEEeCCcceeeee------------eEEEEEee
Q 021925           93 DS-------------------------------P-ARSVDFAVGDKLAVITTDPFMELNS------------AIHVKRIA  128 (305)
Q Consensus        93 ~~-------------------------------~-v~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~  128 (305)
                      ..                               . =..+++.+...+++...........            ...+..+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            11                               1 1235667777777666543221110            00111111


Q ss_pred             cccCCCCCceEEEEeccCCCee---------EEEEcCCC---CEEEEeeCCCcEEEEeCCCCcEeeeeccccC-------
Q 021925          129 RDPADQGGESVLILKGPQGRIN---------RAVWGPLN---RTIISAGEDAIVRIWDTETGKLLKESDKETG-------  189 (305)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~i~---------~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------  189 (305)
                          ...++..-.++.....+.         -+....++   +.++.+..+|.++++|..+++++...+....       
T Consensus       277 ----~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d  352 (560)
T d1kv9a2         277 ----PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD  352 (560)
T ss_dssp             ----TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred             ----CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccC
Confidence                122333333332221111         11122233   3566788899999999999988754431100       


Q ss_pred             ------------------------Cc--cceEEEEEcCCCCEEEEEeC--------------------------------
Q 021925          190 ------------------------HK--KTITSLAKAADGSHFLTGSL--------------------------------  211 (305)
Q Consensus       190 ------------------------~~--~~v~~~~~~~~~~~l~~~~~--------------------------------  211 (305)
                                              ..  ..-...+++|+...++....                                
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  432 (560)
T d1kv9a2         353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP  432 (560)
T ss_dssp             TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred             hhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCC
Confidence                                    00  00013456666666554332                                


Q ss_pred             ----CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          212 ----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       212 ----dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                          .|.+.-+|+.+++.+.+.....+...-.++-.+.++++|+.++.
T Consensus       433 ~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~  480 (560)
T d1kv9a2         433 AAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQ  480 (560)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE
T ss_pred             CcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCc
Confidence                25788999999999999887666655455556677777777776

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.79  E-value=0.02  Score=44.27  Aligned_cols=105  Identities=18%  Similarity=0.202  Sum_probs=67.1

Q ss_pred             CeeEEEEcCCCCEEEEeeCCC-----------cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-CeE
Q 021925          148 RINRAVWGPLNRTIISAGEDA-----------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KSA  215 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i  215 (305)
                      .+.......+++.++.|+.+.           .+.+||..+++-.........+.......++.+++++++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            333444556788888777421           37799999876433221111233333456788999999988765 579


Q ss_pred             EEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeC
Q 021925          216 KLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEP  252 (305)
Q Consensus       216 ~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~  252 (305)
                      .+||..+..-...-.  ....-.+++..+||++++.|+.
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~  139 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGS  139 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCC
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccc
Confidence            999998776543222  2333457788889999998874

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.069  Score=38.93  Aligned_cols=178  Identities=8%  Similarity=-0.043  Sum_probs=103.5

Q ss_pred             EEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925           66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (305)
Q Consensus        66 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (305)
                      +|+.+.. ..|+-.++.+.+..........+..++|.+....+..+.....    .+....+..  ..............
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~----~I~~~~l~~--~~~~~~~~~~~~~~   75 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR----MICSTQLDR--AHGVSSYDTVISRD   75 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTT----EEEEEEC----------CEEEECSS
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCC----EEEEEEecC--CCCCcceEEEEeCC
Confidence            3444443 3588888887766555555566778889887776666532211    111111111  01111222333344


Q ss_pred             CCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe--CCCeEEEEEcCC
Q 021925          146 QGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDART  222 (305)
Q Consensus       146 ~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~  222 (305)
                      ...+..+++.+.++.|..+. ..+.|.+.++........+.   ........++++|...+|....  ..+.|.-.++..
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~---~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG  152 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEc---CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC
Confidence            45677899988777666554 56789999998665444343   3445678899998665655443  345677777654


Q ss_pred             ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCC
Q 021925          223 LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQ  253 (305)
Q Consensus       223 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~  253 (305)
                      ........ .-...+.+++++.++.|..+...
T Consensus       153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~  184 (266)
T d1ijqa1         153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  184 (266)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CceecccccccceeeEEEeeccccEEEEecCC
Confidence            43333332 23456889999888877776443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.30  E-value=0.21  Score=40.77  Aligned_cols=229  Identities=8%  Similarity=-0.032  Sum_probs=124.8

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecCCC----cceEEEEEcCCCcEEEEEe------CCCcEEEEecCCCCeeEEEee
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHN----GAVWCCDVSRDSMTLITGS------ADQTAKLWNVETGAQLFTFNF   92 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~----~~v~~i~~~~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~   92 (305)
                      ..|+.++.||.+.--|.++|+.+.......    ..++.--...++ .++.+.      .+|.|.-+|+++|+.+..+..
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            356677889999888999999876654221    111111111134 344444      368899999999999998763


Q ss_pred             CCC--------------------------------------c-eEEEEecCCceEEEeCCcceeeeee---------EEE
Q 021925           93 DSP--------------------------------------A-RSVDFAVGDKLAVITTDPFMELNSA---------IHV  124 (305)
Q Consensus        93 ~~~--------------------------------------v-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  124 (305)
                      ...                                      + ...++.+....+.............         ..+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence            211                                      1 2346666666666555422111100         001


Q ss_pred             EEeecccCCCCCceEEEEeccCCCe---------eEEEEcCCCC---EEEEeeCCCcEEEEeCCCCcEeeeecccc----
Q 021925          125 KRIARDPADQGGESVLILKGPQGRI---------NRAVWGPLNR---TIISAGEDAIVRIWDTETGKLLKESDKET----  188 (305)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i---------~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----  188 (305)
                      .-+.    ...++.+-.++.....+         .......+++   .++.++.+|.++++|..+++.+.......    
T Consensus       275 vAld----~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~  350 (571)
T d2ad6a1         275 WGRD----LDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV  350 (571)
T ss_dssp             EEEE----TTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             eeee----ccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccc
Confidence            1111    12333333333221111         1111222332   46678889999999999998774321100    


Q ss_pred             ------------------------------CCcc--ceEEEEEcCCCCEEEEEeCC------------------------
Q 021925          189 ------------------------------GHKK--TITSLAKAADGSHFLTGSLD------------------------  212 (305)
Q Consensus       189 ------------------------------~~~~--~v~~~~~~~~~~~l~~~~~d------------------------  212 (305)
                                                    +..+  .-...+++|+...++....+                        
T Consensus       351 ~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (571)
T d2ad6a1         351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccccccee
Confidence                                          0000  00124566666655543322                        


Q ss_pred             -------------CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          213 -------------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       213 -------------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                                   |.+.-+|+++++.+.+.....+..+-.++..+.++++|+.|+..
T Consensus       431 ~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l  487 (571)
T d2ad6a1         431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYL  487 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEE
T ss_pred             eccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeE
Confidence                         56888999999999888766555444444456677777777763

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.12  Score=37.58  Aligned_cols=212  Identities=8%  Similarity=-0.068  Sum_probs=118.5

Q ss_pred             EEEEeeCCCceEEEEcCCCe-----eeEEecCCCcceEEEEEcCCCcEEEEE-eCCCcEEEEecCCCCeeEEEee-CCCc
Q 021925           24 LLFSCAKDHTPTVWFADNGE-----RLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVETGAQLFTFNF-DSPA   96 (305)
Q Consensus        24 ~l~s~~~dg~v~iw~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~-~~~v   96 (305)
                      +|+-+. .+.|+-.+++...     ....+..+...+.+++|.+..+.|.-+ ..++.|+..++........... -..+
T Consensus         3 fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p   81 (263)
T d1npea_           3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (263)
T ss_dssp             EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             EEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence            444333 3456666655332     112233344567889998866666554 4567788888876655444432 2567


Q ss_pred             eEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC---CCcEEEE
Q 021925           97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIW  173 (305)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iw  173 (305)
                      ..+++..-+..+..+...    ...+...++.      ..............+..++.+|...+++....   .+.|.--
T Consensus        82 ~~iAvD~~~~~lY~~d~~----~~~I~~~~~d------g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~  151 (263)
T d1npea_          82 EGIALDHLGRTIFWTDSQ----LDRIEVAKMD------GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (263)
T ss_dssp             EEEEEETTTTEEEEEETT----TTEEEEEETT------SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             cEEEEeccCCeEEEeccC----CCEEEEEecC------CceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEe
Confidence            889998766555544321    1122222221      11112223333466889999998877765432   2345555


Q ss_pred             eCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925          174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGE  251 (305)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  251 (305)
                      ++..........   ..-.....+++++.++.|..+ ...+.|...|+........+.......++++.  +..|..+.
T Consensus       152 ~~dG~~~~~i~~---~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd  225 (263)
T d1npea_         152 HMDGTNRRILAQ---DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTD  225 (263)
T ss_dssp             ETTSCCCEEEEC---TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEE
T ss_pred             cCCCCCceeeee---ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEE
Confidence            665433222222   233566889999877777555 46788999998765544444433334567765  44555554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.21  E-value=0.16  Score=38.43  Aligned_cols=191  Identities=8%  Similarity=0.045  Sum_probs=103.8

Q ss_pred             ceEEEEEcCCCCEEEEeeC------------CCceEEEEcCCCeee-EEe--cCC-----CcceEEEEE--cCCCc-EEE
Q 021925           12 PLTYLKYNKDGDLLFSCAK------------DHTPTVWFADNGERL-GTY--RGH-----NGAVWCCDV--SRDSM-TLI   68 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~------------dg~v~iw~~~~~~~~-~~~--~~~-----~~~v~~i~~--~~~~~-~l~   68 (305)
                      ..-+|...|+|..+++++.            .|.|.++|+.+.+.. ..+  .+.     .-....+..  .++++ +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            4557888999987776542            388999998764321 111  111     012344444  34554 444


Q ss_pred             EEe---CCCcEEEEecCCCCeeEE----Ee--eCCCceEEEEecCCceEEEeCCcceee----------eeeEEEEEeec
Q 021925           69 TGS---ADQTAKLWNVETGAQLFT----FN--FDSPARSVDFAVGDKLAVITTDPFMEL----------NSAIHVKRIAR  129 (305)
Q Consensus        69 s~~---~dg~v~vwd~~~~~~~~~----~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~  129 (305)
                      +..   ...+|-+|++........    +.  ......++....++.+.++-.......          .....++... 
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~-  194 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-  194 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC-
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc-
Confidence            442   456788888754432211    11  223467888888888777743211100          0111222221 


Q ss_pred             ccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEE
Q 021925          130 DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT  208 (305)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  208 (305)
                            .+........-...+.++++|++++|+.+. ..++|+.|++.....+...... .-....-.+.+.+++..+.+
T Consensus       195 ------~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~~~g~lwv  267 (340)
T d1v04a_         195 ------PNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWV  267 (340)
T ss_dssp             ------SSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEE
T ss_pred             ------CCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEecCCCEEEE
Confidence                  122333334456688999999998776554 5789999999754433222111 23445667777764333444


Q ss_pred             Ee
Q 021925          209 GS  210 (305)
Q Consensus       209 ~~  210 (305)
                      ++
T Consensus       268 a~  269 (340)
T d1v04a_         268 GC  269 (340)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.31  Score=37.28  Aligned_cols=101  Identities=9%  Similarity=0.010  Sum_probs=69.8

Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  227 (305)
                      .|..++|+.+  .++.. .++.+..++...-.......   ....++..+.+.|.  .++....+|.+.++++..++...
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~---~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~  159 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVT---SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ  159 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEE---ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccc---cccccccceecCCc--eeEEEecCCCEEEEEeccCcccc
Confidence            6888999754  45544 45668888877644433332   23456788888775  56777789999999998875433


Q ss_pred             E------EeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925          228 T------YVTERPVNAVTMSPLLDHVCIGEPQTIK  256 (305)
Q Consensus       228 ~------~~~~~~v~~~~~~~~~~~l~~~~~~~~~  256 (305)
                      .      +.-...+.+++|++.|..++++.++...
T Consensus       160 ~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q  194 (381)
T d1xipa_         160 LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEME  194 (381)
T ss_dssp             EEESEEEEEECSSEEEEEETTSCEEEEEEETTEEE
T ss_pred             ccCCcceEEecCCceEEEEeCCcEEEEEeCCCcee
Confidence            2      2245678999999999999888665543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.39  Score=36.77  Aligned_cols=181  Identities=8%  Similarity=0.001  Sum_probs=92.3

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCceEEEEcCC-----------CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEE
Q 021925           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-----------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (305)
Q Consensus        11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-----------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vw   79 (305)
                      ...+-++.++...++++|+.++ ++|-...+           ........  -..|..++|+.+  .|+.. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence            4566788888777888888775 56665321           11111111  125889999755  45444 44668888


Q ss_pred             ecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925           80 NVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (305)
Q Consensus        80 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (305)
                      +..+-....... ...++..+.+.|....++...+       ......+.......-...+..+. -.+.+.+++|++.+
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~-------~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~v~ws~kg  182 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVN-------DLSALDLRTKSTKQLAQNVTSFD-VTNSQLAVLLKDRS  182 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTS-------EEEEEETTTCCEEEEEESEEEEE-ECSSEEEEEETTSC
T ss_pred             EeeccccccccccccccccceecCCceeEEEecCC-------CEEEEEeccCccccccCCcceEE-ecCCceEEEEeCCc
Confidence            876654443333 5566777777765433332221       11111111100000000001111 13567888888888


Q ss_pred             CEEEEeeCCCcEEE-EeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE
Q 021925          159 RTIISAGEDAIVRI-WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG  209 (305)
Q Consensus       159 ~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  209 (305)
                      +.++++..++ ..+ -++....   .+.........|.++.|-.+..++++-
T Consensus       183 kq~v~~~g~~-~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         183 FQSFAWRNGE-MEKQFEFSLPS---ELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEEEETTE-EEEEEEECCCH---HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEEEeCCCc-eeeccCCCCcc---ccCCCcCCCcceeEEEEecCceEEEEE
Confidence            8887764322 111 1211111   111111234578899998777776654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.12  E-value=0.037  Score=45.56  Aligned_cols=75  Identities=16%  Similarity=0.254  Sum_probs=53.8

Q ss_pred             CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceE--EEEecCCce
Q 021925           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARS--VDFAVGDKL  107 (305)
Q Consensus        32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~  107 (305)
                      |.+.-+|+.+++.+-+...+ .++..-..+..+.++++|+.||.++-+|.++|+.+.+++.+..+..  +.|..+|+.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            56777888888887766532 2222212233566888899999999999999999999996655443  677778764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.80  E-value=0.06  Score=44.22  Aligned_cols=75  Identities=11%  Similarity=0.107  Sum_probs=54.0

Q ss_pred             CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceE--EEEecCCce
Q 021925           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARS--VDFAVGDKL  107 (305)
Q Consensus        32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~  107 (305)
                      |.+.-||+.+++.+-+.+... +...=..+-.+.++++++.||.++.+|.++|+.+.+++.+..+..  +.|..+|+.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            468889999999887775322 211111223566888899999999999999999999996665544  666667763

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.31  E-value=0.65  Score=34.03  Aligned_cols=196  Identities=11%  Similarity=0.131  Sum_probs=106.5

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCC-CeeeEEecCCC----cceEEEEEcCCCcEEEEEe-------CCCcEEEE
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHN----GAVWCCDVSRDSMTLITGS-------ADQTAKLW   79 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~----~~v~~i~~~~~~~~l~s~~-------~dg~v~vw   79 (305)
                      +|.-=.|-.+ +.|+-.+ +..|+-|+++. .++.+.+..|.    ..|..-..++++++++..+       -.|.+.+|
T Consensus       104 ~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLY  181 (327)
T d1utca2         104 DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY  181 (327)
T ss_dssp             CCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEE
Confidence            4444455433 4555554 45899999854 34666666554    3577777788888776432       14778899


Q ss_pred             ecCCCCeeEEEeeCCCceEEEEe-----cCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCC--ce-EEEEecc---CC
Q 021925           80 NVETGAQLFTFNFDSPARSVDFA-----VGD-KLAVITTDPFMELNSAIHVKRIARDPADQGG--ES-VLILKGP---QG  147 (305)
Q Consensus        80 d~~~~~~~~~~~~~~~v~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~---~~  147 (305)
                      ..+.+... .+  ++...+++-.     +.. .+++.+...  .....+++.++.........  +. +..+-..   .+
T Consensus       182 S~er~~sQ-~i--eGhaa~F~~~~~~g~~~~~~lf~fa~r~--~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~D  256 (327)
T d1utca2         182 SVDRKVSQ-PI--EGHAASFAQFKMEGNAEESTLFCFAVRG--QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND  256 (327)
T ss_dssp             ETTTTEEE-EE--CCSEEEEEEECCTTCSSCEEEEEEEEEE--TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTC
T ss_pred             EeccCcCc-cc--cceeeeeEEEEcCCCCCCceEEEEEECC--CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCC
Confidence            88754321 11  1111111111     111 122222211  11234444444432221111  11 1111112   34


Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (305)
Q Consensus       148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  217 (305)
                      -.-++..++....+..-+.-|.|++||+.++.++..-+   -....|...+-+.+..-+++...+|.|.-
T Consensus       257 FPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR---Is~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         257 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR---ISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             cEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee---cCCCceEEeccCCCCceEEEECCCCeEEE
Confidence            45678889888889999999999999999999887665   23455554444444444555556666543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.62  Score=33.65  Aligned_cols=95  Identities=11%  Similarity=0.014  Sum_probs=45.2

Q ss_pred             CCEEEEeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCceEEE
Q 021925          158 NRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLELIK  227 (305)
Q Consensus       158 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~  227 (305)
                      +..++.|+.+     ..+..||..+.+....-...  ....-.+.... ++++++.|+.+     .....+|..+.+...
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~  225 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN--TIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTF  225 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccc--cccccccccce-eeeEEEecCccccccccceeeeeecceeeec
Confidence            4445555443     45788888766543222111  11111122222 35566666554     346777877665443


Q ss_pred             EEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925          228 TYV-TERPVNAVTMSPLLDHVCIGEPQTI  255 (305)
Q Consensus       228 ~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  255 (305)
                      .-. ........+...++++++.|+.++.
T Consensus       226 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~  254 (288)
T d1zgka1         226 VAPMKHRRSALGITVHQGRIYVLGGYDGH  254 (288)
T ss_dssp             CCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             ccCccCcccceEEEEECCEEEEEecCCCC
Confidence            222 1112222222346777777765543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.24  E-value=0.93  Score=35.57  Aligned_cols=104  Identities=8%  Similarity=0.036  Sum_probs=61.1

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE--Eec------CCCcceEEEEEcCC---CcEEEEE-e------
Q 021925           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG--TYR------GHNGAVWCCDVSRD---SMTLITG-S------   71 (305)
Q Consensus        10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~--~~~------~~~~~v~~i~~~~~---~~~l~s~-~------   71 (305)
                      -...++|+|.|||+++++--..|.|++++..+++...  .+.      .-.+....|+|+|+   ..++... +      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            4567799999999988876557999999877765432  221      12356889999984   2344332 1      


Q ss_pred             CC----Cc--EEEEecCCCCee-----EEEe-----eCCCceEEEEecCCceEEEeCC
Q 021925           72 AD----QT--AKLWNVETGAQL-----FTFN-----FDSPARSVDFAVGDKLAVITTD  113 (305)
Q Consensus        72 ~d----g~--v~vwd~~~~~~~-----~~~~-----~~~~v~~~~~~~~~~~~~~~~~  113 (305)
                      .+    +.  +..+........     ..+.     .......+.|.|++.+.++.++
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            01    11  223333222111     0111     2234568999999987777665

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.08  E-value=1.8  Score=35.24  Aligned_cols=69  Identities=19%  Similarity=0.217  Sum_probs=46.3

Q ss_pred             CEEEEeeCCCceEEEEcCCCeeeEEecCCCcce-EEEEEcC--CCcEEEEEeC------CCcEEEEecCCCCeeEEEe
Q 021925           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-WCCDVSR--DSMTLITGSA------DQTAKLWNVETGAQLFTFN   91 (305)
Q Consensus        23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v-~~i~~~~--~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~   91 (305)
                      ..++.++.|+.|.-.|.++|+.+..+....... ..+.-.|  -+..++.+..      .|.|+-+|.++|+.+.++.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            468888899999999999999888775321100 0111112  1234555543      4889999999999999876

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.84  E-value=1.9  Score=32.43  Aligned_cols=202  Identities=14%  Similarity=0.215  Sum_probs=112.4

Q ss_pred             CCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC------CCcEEEEEeC--C--CcEEEEecCC-CCeeE
Q 021925           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR------DSMTLITGSA--D--QTAKLWNVET-GAQLF   88 (305)
Q Consensus        20 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~------~~~~l~s~~~--d--g~v~vwd~~~-~~~~~   88 (305)
                      |+..+++...+++-|++||++ |+.+..+.  .+.+..+..-.      +..-++.++.  +  .+|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            355678877777789999985 88777765  35566655432      2223455542  2  2577887752 22333


Q ss_pred             EEee--------CCCceEEEE--ecC-CceEEEeCCcceeeeeeEEEEEeecccCC-CCCceEEEEeccCCCeeEEEEcC
Q 021925           89 TFNF--------DSPARSVDF--AVG-DKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGP  156 (305)
Q Consensus        89 ~~~~--------~~~v~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~  156 (305)
                      .+..        ...+..+++  ++. +...+...+.    .+.+..|.+...... ...+.++.+. -...+..+.+.+
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k----~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDd  189 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGK----EGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADD  189 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEET
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcC----CceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeC
Confidence            3321        123556665  554 4333333321    233444444322211 1122333333 345788999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCC-----CcEeeeeccccCCccceEEEEEcC--C--CCEEEEEeCCCeEEEEEcCC-ceEE
Q 021925          157 LNRTIISAGEDAIVRIWDTET-----GKLLKESDKETGHKKTITSLAKAA--D--GSHFLTGSLDKSAKLWDART-LELI  226 (305)
Q Consensus       157 ~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~--~--~~~l~~~~~dg~i~iwd~~~-~~~~  226 (305)
                      ..+.|+.+-++..|..++...     +..+.... .......+-.++.-.  +  |-+|++.-.+++..+||... .+.+
T Consensus       190 e~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~-g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~  268 (353)
T d1h6la_         190 EYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYV  268 (353)
T ss_dssp             TTTEEEEEETTTEEEEEESSTTSCSCCEEEEECS-SSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred             CCCcEEEecCccceEEEEeccCCCccceeeeccc-CccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcccc
Confidence            999999998887777776642     12221111 112345666666543  2  33455555688999999876 4677


Q ss_pred             EEEe
Q 021925          227 KTYV  230 (305)
Q Consensus       227 ~~~~  230 (305)
                      ..|.
T Consensus       269 g~F~  272 (353)
T d1h6la_         269 ADFQ  272 (353)
T ss_dssp             EEEE
T ss_pred             ceEE
Confidence            6765

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.26  E-value=2.6  Score=32.91  Aligned_cols=52  Identities=15%  Similarity=0.050  Sum_probs=37.4

Q ss_pred             cceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeC---------CCceEEEEecC
Q 021925           53 GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD---------SPARSVDFAVG  104 (305)
Q Consensus        53 ~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---------~~v~~~~~~~~  104 (305)
                      ...++|+|.||+++|++--..|.|++++..+++........         .....++++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45689999999988877655799999998877654433321         23457888884

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.72  E-value=2.8  Score=32.37  Aligned_cols=204  Identities=11%  Similarity=0.062  Sum_probs=101.1

Q ss_pred             EEEEEcCCCCEEEEeeCC----------------CceEEEEcCCCee--eEEecCC--CcceEEEEEcCCCcEEEEEe--
Q 021925           14 TYLKYNKDGDLLFSCAKD----------------HTPTVWFADNGER--LGTYRGH--NGAVWCCDVSRDSMTLITGS--   71 (305)
Q Consensus        14 ~~~~~~~~~~~l~s~~~d----------------g~v~iw~~~~~~~--~~~~~~~--~~~v~~i~~~~~~~~l~s~~--   71 (305)
                      ..++|++|++.|+....+                ..|..+.+.+...  ...+...  ...+..+..++++++++...  
T Consensus       174 ~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~  253 (430)
T d1qfma1         174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE  253 (430)
T ss_dssp             CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred             cceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeec
Confidence            568899999987754432                2467777766432  2333333  33467788899998876432  


Q ss_pred             -CCCcEEEE--ecCCCC--------eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE
Q 021925           72 -ADQTAKLW--NVETGA--------QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL  140 (305)
Q Consensus        72 -~dg~v~vw--d~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (305)
                       .+....+|  |+....        ...............-..++.+++......  .+..+....+..  . .......
T Consensus       254 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a--~~~~L~~~~~~~--~-~~~~w~~  328 (430)
T d1qfma1         254 GCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHS--PNYRLINIDFTD--P-EESKWKV  328 (430)
T ss_dssp             SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTC--TTCEEEEEETTB--C-CGGGCEE
T ss_pred             cCCccEEEEEeeCCCcccccccccceeEeecccccceEEEecCCceeecccCccc--ccceeEEecCCC--C-ccccceE
Confidence             23344444  443221        111122122222222233344443333211  111111111111  0 1111122


Q ss_pred             EEeccCCCeeEEEEcCCCCEEEEee-CCC--cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE-e---CCC
Q 021925          141 ILKGPQGRINRAVWGPLNRTIISAG-EDA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-S---LDK  213 (305)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg  213 (305)
                      .+..+...+..-.+...+.+|+... .++  .|+++++.++.......   ...+.+..+...++...+... +   .-.
T Consensus       329 vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~---~~~~sv~~~~~~~~~~~~~~~~ss~~tP~  405 (430)
T d1qfma1         329 LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP---LEVGSVVGYSGQKKDTEIFYQFTSFLSPG  405 (430)
T ss_dssp             EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC---CCSSEEEEEECCTTCSEEEEEEECSSCCC
T ss_pred             EecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecC---CCCceEeeccCCCCCCEEEEEEcCCCCCC
Confidence            3334444454444444456666554 444  68899998877655443   234556666655655544322 2   247


Q ss_pred             eEEEEEcCCceE
Q 021925          214 SAKLWDARTLEL  225 (305)
Q Consensus       214 ~i~iwd~~~~~~  225 (305)
                      +++-+|+.+++.
T Consensus       406 ~~y~~Dl~t~~~  417 (430)
T d1qfma1         406 IIYHCDLTKEEL  417 (430)
T ss_dssp             EEEEEETTSSSC
T ss_pred             eEEEEECCCCCc
Confidence            799999988754

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.87  E-value=3.6  Score=30.86  Aligned_cols=180  Identities=10%  Similarity=0.131  Sum_probs=97.0

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEec----C--CceEEEeCCcceeeeeeEEEEEeecccCCCCC
Q 021925           63 DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV----G--DKLAVITTDPFMELNSAIHVKRIARDPADQGG  136 (305)
Q Consensus        63 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (305)
                      +..+++...+.+-|.+||++ |+.+..+. .+.+..+....    +  ...++++++.... ...+.++.+....     
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~-~~~l~~~~id~~~-----  110 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEG-KNTIEIYAIDGKN-----  110 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTT-TCEEEEEEEETTT-----
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCc-ceeEEEEEecCcc-----
Confidence            45577777777779999985 77776654 34555555442    1  2233444322100 1123333332111     


Q ss_pred             ceEEEEe-------ccCCCeeEEEE--cCC-CC-EEEEeeCCCcEEEEeCC---CC----cEeeeeccccCCccceEEEE
Q 021925          137 ESVLILK-------GPQGRINRAVW--GPL-NR-TIISAGEDAIVRIWDTE---TG----KLLKESDKETGHKKTITSLA  198 (305)
Q Consensus       137 ~~~~~~~-------~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~~~v~~~~  198 (305)
                      ..+..+.       .....+..+|+  +|. +. +++....+|.+..|.+.   .+    +.++.+.    ....+..|.
T Consensus       111 ~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~----~~~q~EGCV  186 (353)
T d1h6la_         111 GTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK----MNSQTEGMA  186 (353)
T ss_dssp             TEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE----CSSCEEEEE
T ss_pred             cccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC----CCCccceEE
Confidence            1111111       11234666666  664 44 45566778998888763   23    2344443    456788999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCC-----ceEEEEEe---eCCCeeEEEec--CCCC-cEEEeeCCc
Q 021925          199 KAADGSHFLTGSLDKSAKLWDART-----LELIKTYV---TERPVNAVTMS--PLLD-HVCIGEPQT  254 (305)
Q Consensus       199 ~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~---~~~~v~~~~~~--~~~~-~l~~~~~~~  254 (305)
                      +.+....|+.+-++.-|+.+++..     +..+....   ....+..++.-  ++++ +|++++...
T Consensus       187 vDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~  253 (353)
T d1h6la_         187 ADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN  253 (353)
T ss_dssp             EETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             EeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence            999989999998887777666541     22222221   23456666643  3433 666554333

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.83  E-value=3.5  Score=28.44  Aligned_cols=150  Identities=14%  Similarity=0.131  Sum_probs=78.2

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE--EecCC-------CcceEEEEEcC-CCcEEEEEeC-CCcEEEEe
Q 021925           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG--TYRGH-------NGAVWCCDVSR-DSMTLITGSA-DQTAKLWN   80 (305)
Q Consensus        12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~--~~~~~-------~~~v~~i~~~~-~~~~l~s~~~-dg~v~vwd   80 (305)
                      .|.++++. +.+.+.+|+......+|-++.|+..+  .+.+.       .+.|..+.+.. +..-+.++.. .|.+++++
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            34455543 34577788888888999888776433  33221       23455555533 3334555555 78888888


Q ss_pred             cCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc--------CCCeeEE
Q 021925           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--------QGRINRA  152 (305)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~~  152 (305)
                      ...|......          ..++.+. +....    ..+. ..|-.. ..   .......+.-.        .-.|+-+
T Consensus       184 pkeGS~~~ay----------~~~gnKV-~sdyE----t~gE-sywit~-D~---~s~~yerve~P~kd~~sy~p~~I~~~  243 (313)
T d2hu7a1         184 SGEGSFSSAS----------ISPGMKV-TAGLE----TARE-ARLVTV-DP---RDGSVEDLELPSKDFSSYRPTAITWL  243 (313)
T ss_dssp             CSSEEEEEEE----------ECTTSCE-EEEEE----ESSC-EEEEEE-CT---TTCCEEECCCSSCHHHHHCCSEEEEE
T ss_pred             CCCCccccee----------EccCcee-eeccC----CCCc-eEEEEE-ec---ccCceeeeecCcccceeecceEEEee
Confidence            7665443332          3333333 11100    0000 001000 00   00111111111        2234455


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCCcEeeee
Q 021925          153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKES  184 (305)
Q Consensus       153 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  184 (305)
                      -+.|++++++.+-.||.-++++  +++.+..-
T Consensus       244 ~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p  273 (313)
T d2hu7a1         244 GYLPDGRLAVVARREGRSAVFI--DGERVEAP  273 (313)
T ss_dssp             EECTTSCEEEEEEETTEEEEEE--TTEEECCC
T ss_pred             eeCCCCcEEEEEecCCchheee--cceEecCC
Confidence            6899999989999999999987  56665543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.73  E-value=4.5  Score=28.71  Aligned_cols=64  Identities=20%  Similarity=0.272  Sum_probs=34.2

Q ss_pred             CCEEEEeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCce
Q 021925          158 NRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLE  224 (305)
Q Consensus       158 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~  224 (305)
                      ++.++.|+.+     .....+|..+.+....-... ....... ++. .++++++.|+.++     .+.+||+.+.+
T Consensus       196 ~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~r~~~~-~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         196 NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK-HRRSALG-ITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS-SCCBSCE-EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             eeEEEecCccccccccceeeeeecceeeecccCcc-CcccceE-EEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            4455555443     35678888766543322111 1111122 222 2677888877654     37889988654