Citrus Sinensis ID: 021931

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MESLLHSTSATYLVPKFPKLITYNQNSCLAFARNSVIVGAKRSNKKKNNNDNNKEDSHSFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKLYESLNIELESELNVERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLRAEMHGYDEEEDDIDYDDEEYDDEYDDGEGDEMDDNVDDDFEHGFSIVNVDDNEGEDSNDRSANISTIGRSNLRAEKVSR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEEEEEEccHHHHHHHHHHHcccccEEEEEEEEEccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
ccEHEcccccccccccccEEEEEEcccEEEEEcccEEEEEEEcccccccccccccccccccccccccccccHHHHHHHHccEccccccccccccHHHHHHHHHHHHHccccccHHHccEEEEEEEEccccHHHHHHHHHHHHHHHHHcccEEEEEcccccHHcccHHHHHHHHHHEEEEEcccHHHHHHHHHHccHcHHHHHHHEEEccccccccccccHHHHHHHHHcccccHHcccccccHHHcccccccccccHccccccccccccEEEEEcccccccccccHHHHHcccccccEEEEEccc
Coil and Loop (DISEMBL)
mesllhstsatylvpkfpklitYNQNSCLAFARNSVIVgakrsnkkknnndnnkedshsffskadednlffpeAVLLKEKKVQEdgralpefaddEEEKLYESLNIELESELNVERRRHYEVVYLIHEKyeedvgsvNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKrdkaitedcppppefhtlraemhgydeeeddidyddeeyddeyddgegdemddnvdddfeHGFSivnvddnegedsndrsanistigrsnlraekvsr
Flexible Loop (DISEMBL)
mesllhstsatylvpkfPKLITYNQNSCLAFARNSVIvgakrsnkkknnndnnkedSHSFFSKADEDNLFFPEAVLLKekkvqedgralpefaddeeeKLYESLNieleselnverRRHYEVVYLIHekyeedvgsvneKVQDflrekkgrvwrlndwglrRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVikrdkaitedcppppEFHTLRAEMHGYDEEEDDIDYDDEEYDDEYDDGEGDEMDDNVDDDFEHGFSIvnvddnegedsndrsanistigrsnlraekvsr
Low Complexity Region (SEG)
MESLLHSTSATYLVPKFPKLITYNQNSCLAFARNSVIVGAKRSnkkknnndnnkEDSHSFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKlyeslnieleselnVERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLRAEMHgydeeeddidyddeeyddeyddgegdemddnvdddfeHGFSIVNVDDNEGEDSNDRSANISTIGRSNLRAEKVSR
Disordered region (IsUnstruct)
*********ATYLVPKFPKLITYNQNSCLAFARNSVIVG*****************************LFFPEAVLL************************ESLNIELESELNVERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAIT********************************************************************************************
Disordered Region (DISOPRED)
**************PKFPKLITYNQNSCLAFA********************************DEDNLFFPEAVLLKEKKVQE*GRALPEFADDEEEKLYESLNIELESELNVERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKA***************************************************************************************R*E****
Disordered Region (DISEMBL)
MESLLHSTSATYLVPKFPKLITYNQNSCLAFARNSVIVGAKRSNKKKNNNDNNKEDSHSFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKLYESLNIELESELNVERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLRAEMHGYDEEEDDIDYDDEEYDDEYDDGEGDEMDDNVDDDFEHGFSIVNVDDNEGEDSNDRSANISTIGRSNLRAEKVSR
Disordered Region (DISPRO)
******STSATYLVPKFPKLITYNQNSCLAFARNSVIVGAKRS***************SFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKLYESLNIELESELNVERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK***************************************************VDDDFEHGFSIVNVDDN*********A*ISTIGRSNLR******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESLLHSTSATYLVPKFPKLITYNQNSCLAFARNSVIVGAKRSNKKKNNNDNNKEDSHSFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKLYESLNIELESELNVERRRHYEVVYLIxxxxxxxxxxxxxxxxxxxxxKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLRAEMHGYDEEEDDIDYDDEEYDDEYDDGEGDEMDDNVDDDFEHGFSIVNVDDNEGEDSNDRSANISTIGRSNLRAEKVSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
Q0VMF9	113	30S ribosomal protein S6	yes	no	0.327	0.884	0.43	3e-19
Q82XQ6	146	30S ribosomal protein S6	yes	no	0.327	0.684	0.38	9e-19
Q0ADI6	144	30S ribosomal protein S6	yes	no	0.465	0.986	0.304	2e-18
O07813	122	30S ribosomal protein S6	yes	no	0.327	0.819	0.41	2e-18
Q5F925	122	30S ribosomal protein S6	yes	no	0.327	0.819	0.41	2e-18
Q7NRY7	124	30S ribosomal protein S6	yes	no	0.327	0.806	0.41	2e-18
A1KUF0	122	30S ribosomal protein S6	yes	no	0.327	0.819	0.41	2e-18
Q9JU24	122	30S ribosomal protein S6	yes	no	0.327	0.819	0.41	2e-18
A9LZQ3	122	30S ribosomal protein S6	yes	no	0.327	0.819	0.41	2e-18
Q5P2M5	128	30S ribosomal protein S6	yes	no	0.327	0.781	0.39	3e-18

>sp|Q0VMF9|RS6_ALCBS 30S ribosomal protein S6 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsF PE=3 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 64/100 (64%)

Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYEVV+L+H    E V ++ E+    + + KG + R+ DWG R+LAY I K  KAHY++
Sbjct: 2   RHYEVVFLVHPDQSEQVSAMVERYSAIVTDGKGTIHRVEDWGRRQLAYPINKIHKAHYVM 61

Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
           +N E + + + + +     ++ VIRHLVI+RD AITE  P
Sbjct: 62  LNIECDGETLGELENTFRFNDAVIRHLVIRRDNAITEPSP 101

Binds together with S18 to 16S ribosomal RNA.
Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) (taxid: 393595)

>sp|Q82XQ6|RS6_NITEU 30S ribosomal protein S6 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=rpsF PE=3 SV=1

 Score = 94.4 bits (233), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 63/100 (63%)

Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+V+++H    E V ++ E+  + +  + G++ RL DWG R+L Y IQK  KAHY+L
Sbjct: 2   RHYEIVFIVHPDQSEQVSAMTERYSNIVTGRSGKIHRLEDWGRRQLTYPIQKLHKAHYVL 61

Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
           MN E + + +N+ +     ++ ++RHLVI+ +  IT   P
Sbjct: 62  MNIECDQESLNELEHSFKFNDAILRHLVIRMNGPITTPSP 101

Binds together with S18 to 16S ribosomal RNA.

Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) (taxid: 228410)

>sp|Q0ADI6|RS6_NITEC 30S ribosomal protein S6 OS=Nitrosomonas eutropha (strain C91) GN=rpsF PE=3 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 22/164 (13%)

Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+++++H    E V ++ E+  + + E+ G + RL DWG R+L Y IQK  KAHYIL
Sbjct: 2   RHYEIIFIVHPDQSEQVSAMIERYSNMITERSGGIHRLEDWGRRQLTYPIQKLHKAHYIL 61

Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLRAEMHGYDEEED 237
           MN E + + +N+ +     ++ ++RHLVI+ +  +T   P                    
Sbjct: 62  MNIECDQESLNELEHSFKFNDAILRHLVIRMNGPVTTPSP-------------------- 101

Query: 238 DIDYDDEEYDDEYDDGEGDEMDDNVDDDFEHGFSIVNVDDNEGE 281
            +  DD+   DE   G       NV DD   G  +V  ++N+ +
Sbjct: 102 -MMQDDKSKPDENSRGTAAP-TVNVADDSASGAQVVAAEENDTQ 143

Binds together with S18 to 16S ribosomal RNA.

Nitrosomonas eutropha (strain C91) (taxid: 335283)

>sp|O07813|RS6_NEIGO 30S ribosomal protein S6 OS=Neisseria gonorrhoeae GN=rpsF PE=3 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 62/100 (62%)

Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+V+++H    E V ++ E+ +  + E  G++ RL DWG R+LAY I K  KAHY+L
Sbjct: 2   RHYEIVFIVHPDQSEQVPAMVERYKTMITEANGKIHRLEDWGRRQLAYPINKIHKAHYVL 61

Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
           MN E   + + + +T    ++ V+RHL IK   A+TE  P
Sbjct: 62  MNIETTPEVVGELETAFRFNDAVLRHLTIKTKHAVTEASP 101

Binds together with S18 to 16S ribosomal RNA.

Neisseria gonorrhoeae (taxid: 485)

>sp|Q5F925|RS6_NEIG1 30S ribosomal protein S6 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rpsF PE=3 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 62/100 (62%)

Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+V+++H    E V ++ E+ +  + E  G++ RL DWG R+LAY I K  KAHY+L
Sbjct: 2   RHYEIVFIVHPDQSEQVPAMVERYKTMITEANGKIHRLEDWGRRQLAYPINKIHKAHYVL 61

Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
           MN E   + + + +T    ++ V+RHL IK   A+TE  P
Sbjct: 62  MNIETTPEVVGELETAFRFNDAVLRHLTIKTKHAVTEASP 101

Binds together with S18 to 16S ribosomal RNA.

Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) (taxid: 242231)

>sp|Q7NRY7|RS6_CHRVO 30S ribosomal protein S6 OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=rpsF PE=3 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 66/100 (66%)

Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+V+++H    E V ++ E+ +  +   +G++ RL DWG R+LAY IQK  KAHY+L
Sbjct: 2   RHYEIVFIVHPDQSEQVPAMIERYKGMVLAAEGKIHRLEDWGRRQLAYPIQKLHKAHYVL 61

Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
           MN E +A+ + + +     ++ V+RHL IK D+AI++  P
Sbjct: 62  MNVECQAETLAEIEHAFKFNDAVLRHLTIKMDRAISDASP 101

Binds together with S18 to 16S ribosomal RNA.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

>sp|A1KUF0|RS6_NEIMF 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rpsF PE=3 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 62/100 (62%)

Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+V+++H    E V ++ E+ +  + E  G++ RL DWG R+LAY I K  KAHY+L
Sbjct: 2   RHYEIVFIVHPDQSEQVPAMVERYKTMIAEANGKIHRLEDWGRRQLAYPINKIHKAHYVL 61

Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
           MN E   + + + +T    ++ V+RHL IK   A+TE  P
Sbjct: 62  MNIETTPEVVEELETAFRFNDAVLRHLTIKTKHAVTEASP 101

Binds together with S18 to 16S ribosomal RNA.

Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) (taxid: 272831)

>sp|Q9JU24|RS6_NEIMA 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=rpsF PE=3 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 62/100 (62%)

Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+V+++H    E V ++ E+ +  + E  G++ RL DWG R+LAY I K  KAHY+L
Sbjct: 2   RHYEIVFIVHPDQSEQVPAMVERYKTMIAEANGKIHRLEDWGRRQLAYPINKIHKAHYVL 61

Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
           MN E   + + + +T    ++ V+RHL IK   A+TE  P
Sbjct: 62  MNIETTPEVVEELETAFRFNDAVLRHLTIKTKHAVTEASP 101

Binds together with S18 to 16S ribosomal RNA.

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

>sp|A9LZQ3|RS6_NEIM0 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rpsF PE=3 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 62/100 (62%)

Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+V+++H    E V ++ E+ +  + E  G++ RL DWG R+LAY I K  KAHY+L
Sbjct: 2   RHYEIVFIVHPDQSEQVPAMVERYKTMIAEANGKIHRLEDWGRRQLAYPINKIHKAHYVL 61

Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
           MN E   + + + +T    ++ V+RHL IK   A+TE  P
Sbjct: 62  MNIETTPEVVEELETAFRFNDAVLRHLTIKTKHAVTEASP 101

Binds together with S18 to 16S ribosomal RNA.

Neisseria meningitidis serogroup C (strain 053442) (taxid: 374833)

>sp|Q5P2M5|RS6_AROAE 30S ribosomal protein S6 OS=Aromatoleum aromaticum (strain EbN1) GN=rpsF PE=3 SV=1

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 63/100 (63%)

Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYEVV+++H    E V ++ E+ +  +  + G++ RL DWG R++AY IQK  KAHY+L
Sbjct: 2   RHYEVVFIVHPDQSEQVPAMIERYKAIVTARNGQIHRLEDWGRRQMAYPIQKVHKAHYVL 61

Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
           MN E + + + + +     ++ V+RHLV+K   A+T   P
Sbjct: 62  MNIECDGEALGELEHAFKFNDAVLRHLVVKTKAAVTTPSP 101

Binds together with S18 to 16S ribosomal RNA.

Aromatoleum aromaticum (strain EbN1) (taxid: 76114)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
224099095	319	predicted protein [Populus trichocarpa]	0.875	0.836	0.630	4e-86
225432037	301	PREDICTED: uncharacterized protein LOC10	0.947	0.960	0.583	2e-81
449462132	318	PREDICTED: uncharacterized protein LOC10	0.760	0.729	0.609	4e-78
357161663	302	PREDICTED: uncharacterized protein LOC10	0.934	0.943	0.518	1e-74
326492696	303	predicted protein [Hordeum vulgare subsp	0.806	0.811	0.561	7e-74
356555979	323	PREDICTED: uncharacterized protein LOC10	0.714	0.674	0.571	2e-73
388521055	307	unknown [Lotus japonicus]	0.750	0.745	0.573	8e-73
356532493	333	PREDICTED: uncharacterized protein LOC10	0.704	0.645	0.572	1e-72
357448827	294	30S ribosomal protein S6 [Medicago trunc	0.704	0.731	0.557	3e-69
297834614	313	hypothetical protein ARALYDRAFT_318480 [	0.731	0.712	0.576	1e-68

>gi|224099095|ref|XP_002311372.1| predicted protein [Populus trichocarpa] gi|222851192|gb|EEE88739.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (829), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 186/295 (63%), Positives = 217/295 (73%), Gaps = 28/295 (9%)

Query: 1   MESLLHSTSATYLVPKFPKLITYNQN-------SCLAFA----------RNSVIVGAKRS 43
           ME+LLH T AT+  PK        QN        C +F+          R SVIV AK+S
Sbjct: 1   METLLHRT-ATFPTPKHRVFSHSIQNKSLFIASGCHSFSARPLFLSLGLRKSVIVEAKKS 59

Query: 44  NKKKNNNDNNKEDSHSFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKLYES 103
           NK  NN   NK+D+HSF +K DE    FPEA+LLKEKK QEDGR LPEFAD EEEKL+E 
Sbjct: 60  NKNNNNK-KNKQDTHSFVAKPDEAIGPFPEAILLKEKKAQEDGRVLPEFADAEEEKLFEF 118

Query: 104 LNIELESELNVERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRL 163
           LN+EL+SEL VER RHYEVVYLIHEK++E+VGS+NEKVQDF+REKKGR+WR NDWG+RRL
Sbjct: 119 LNLELQSELKVERLRHYEVVYLIHEKHDEEVGSLNEKVQDFVREKKGRIWRFNDWGMRRL 178

Query: 164 AYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFH 223
           AYKIQKAK AHYILMNFELEA+WINDFK MLDKDE+VIRHLVIKRD+AITEDCPPPPEFH
Sbjct: 179 AYKIQKAKNAHYILMNFELEARWINDFKNMLDKDERVIRHLVIKRDEAITEDCPPPPEFH 238

Query: 224 TLRAEMHGYDEEEDDIDYD--DEEYDDEYDD------GEGDEMDDNVDDDFEHGF 270
           TL+  M   D EED +DYD  DE YD++ +       G+GDE + +V     HG+
Sbjct: 239 TLQGGMDNND-EEDGLDYDDNDEAYDEDLEVEAEAVYGDGDEAEGSVSVISLHGY 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432037|ref|XP_002273724.1| PREDICTED: uncharacterized protein LOC100243195 [Vitis vinifera] gi|296083213|emb|CBI22849.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 185/317 (58%), Positives = 221/317 (69%), Gaps = 28/317 (8%)

Query: 1   MESLLHSTSATY-LVPKFPKL-----ITYNQNSCLAFARNSVIVGAKRSNK------KKN 48
           M++L+ +   T  L PK  +L     IT+NQ   L F++    + A R  K      KK 
Sbjct: 1   MDALVRTPHITTNLTPKLIRLVGNGGITWNQTPFLTFSKGYSSISANRLRKSVVAEAKKR 60

Query: 49  NNDNNKEDSHSFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKLYESLNIEL 108
             D+   D+H+F  K DE    FPEAVLLKEKK QEDG  LPEFAD EEE+LYE LN++L
Sbjct: 61  KKDS--VDAHNFVPKPDEATGVFPEAVLLKEKKAQEDGSFLPEFADAEEEELYEFLNLQL 118

Query: 109 ESELNVERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQ 168
           ES+LNVER RHYEVVYLIHEK++E+V +VN KVQDF+REKKG++WRLNDWGLRRLAYKIQ
Sbjct: 119 ESDLNVERMRHYEVVYLIHEKHDEEVENVNSKVQDFIREKKGKLWRLNDWGLRRLAYKIQ 178

Query: 169 KAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLRAE 228
           KAK AHYILMNFELEA+WINDFKTMLD+DE+VIRHLVIKRD+AITEDCPPPPEFHTLRA 
Sbjct: 179 KAKNAHYILMNFELEAQWINDFKTMLDQDERVIRHLVIKRDEAITEDCPPPPEFHTLRA- 237

Query: 229 MHGYDEEEDDIDYDDEEYDDEYDDGEGDEMDDNVDDDFEHGFSIVNVDDNEGEDSNDRSA 288
                 ++ D + DD +YDDE D     E+D N        +S   VD     +S+DR  
Sbjct: 238 ----GTDDYDDEEDDVDYDDEDDWDGEGEVDSN-------SYSDDVVDVIVPVNSDDRED 286

Query: 289 NISTIGRSNLRAEKVSR 305
               +GR NLRAEKV R
Sbjct: 287 --KNVGRRNLRAEKVGR 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462132|ref|XP_004148795.1| PREDICTED: uncharacterized protein LOC101219911 [Cucumis sativus] gi|449511877|ref|XP_004164078.1| PREDICTED: uncharacterized LOC101219911 [Cucumis sativus]

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 156/256 (60%), Positives = 188/256 (73%), Gaps = 24/256 (9%)

Query: 17  FPKLITYNQNSCLAFARNSVIVGAKRSNKKKNNNDNNKEDSHSFFSKADEDNLFFPEAVL 76
           FP L     N    F+R S+I+ AK+ N + N     K+D+H    K DE   FFPEAVL
Sbjct: 43  FPTL-----NLSTPFSRKSIILAAKKPNAQPN-----KDDAHRSLPKPDESIGFFPEAVL 92

Query: 77  LKEKKVQEDGRALPEFADDEEEKLYESLNIELESELNVERRRHYEVVYLIHEKYEEDVGS 136
           LKEKKV EDG+ LPEFAD EEEKLYE LN++LESE  VE+ RHYE+V+LIHEK  E+V S
Sbjct: 93  LKEKKVAEDGQFLPEFADAEEEKLYEYLNLQLESESKVEQMRHYEIVFLIHEKNAEEVES 152

Query: 137 VNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDK 196
           V EKVQ FLREKKG++WRL+DWG+RRLAYKI+KAK AHYILMNFELEAKWIN+FK+MLD 
Sbjct: 153 VIEKVQGFLREKKGKLWRLSDWGMRRLAYKIKKAKYAHYILMNFELEAKWINEFKSMLDM 212

Query: 197 DEKVIRHLVIKRDKAITEDCPPPPEFHTLRAEM----------HGYDEEEDDIDYDDEEY 246
           DE+VIRHLVIKRD AITEDCPPPPEFHTLRA +                +D++++DDE  
Sbjct: 213 DERVIRHLVIKRDTAITEDCPPPPEFHTLRAGIDDDDDNEEDDMDDYNSDDEMEWDDEAE 272

Query: 247 DDEYDDGEGDEMDDNV 262
            D+YD+G    +DD +
Sbjct: 273 LDDYDEG----LDDGI 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357161663|ref|XP_003579164.1| PREDICTED: uncharacterized protein LOC100824031 [Brachypodium distachyon]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 153/295 (51%), Positives = 199/295 (67%), Gaps = 10/295 (3%)

Query: 1   MESLLHSTSATYLVPKFPKLITYNQNSCLAFARNSVIVGAKRSNKKKNNNDNNKEDSHSF 60
           ME+   S+   +L+   P   +      L   R  ++    R  K +  + + + D+HSF
Sbjct: 1   MEATAASSRPLFLLAPSPPPAS-TVRFALGVGRRRLVAAGARKRKGQGQDGDERVDTHSF 59

Query: 61  FSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKLYESLNIELESELNVERRRHY 120
             K  E    FPEAVLL++KKV+EDG   PEFAD EEEKLYE LNIELES LN++R RHY
Sbjct: 60  APKDGEVTGPFPEAVLLRKKKVKEDGETSPEFADAEEEKLYEFLNIELESGLNLQRMRHY 119

Query: 121 EVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNF 180
           EVVYLIHE   E+V  V  KVQDF+REKKGR+WR+N+WGLRRLAYKI+KA  A+Y+LMNF
Sbjct: 120 EVVYLIHEDRVEEVEDVMSKVQDFIREKKGRIWRVNNWGLRRLAYKIKKATHANYVLMNF 179

Query: 181 ELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLRAEMHGYDEEEDDID 240
           E++AK+INDFKT+LDKDE++IRHLV+K+D+AITEDCPPPPEFH +R E +  DE    +D
Sbjct: 180 EIQAKYINDFKTLLDKDERIIRHLVMKQDEAITEDCPPPPEFHAMRTEQYMDDEY---VD 236

Query: 241 YDDEEYDDEYDDGEGDEMDDNVDDDFEHG-----FSIVNVDDNEGEDSNDRSANI 290
            + E+ +D YD+ E  E   NVD+ FE G       +  VDD+  ED   R+  +
Sbjct: 237 EEVEKVEDGYDEDEL-ESSGNVDNAFEDGDEPEMILVDEVDDDNAEDLRRRNRKV 290

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326492696|dbj|BAJ90204.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 147/262 (56%), Positives = 187/262 (71%), Gaps = 16/262 (6%)

Query: 1   MESLLHSTSATYLVPKFPKLITYNQNSCLAFARNSVIVGAKRSNKKKNNNDNNKE--DSH 58
           ME+   ST   +L+   P L++  + S L   R  ++    R  + + + D  +E  D+H
Sbjct: 1   MEATAASTRPLFLLAPSPPLVSTVRLS-LRVGRRRLVAAGARKKRGRQDGDAGEERVDAH 59

Query: 59  SFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKLYESLNIELESELNVERRR 118
           SF  K  E    FPEAVLL++KKV+EDG ALPEFAD EEEKLYE LNI+LES LN++R R
Sbjct: 60  SFNPKDGEVTGPFPEAVLLRKKKVKEDGEALPEFADAEEEKLYELLNIQLESGLNLQRMR 119

Query: 119 HYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILM 178
           HYEVVYLIHE   E+V  V  KVQDF+REKKGR+WR+N+WGLRRLAYKI+KA  A+YILM
Sbjct: 120 HYEVVYLIHEDRVEEVEDVVSKVQDFIREKKGRIWRVNNWGLRRLAYKIKKATHANYILM 179

Query: 179 NFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLRAEMHGYDEEEDD 238
           NFE++A+ INDFKT+LDKDE++IRHLV+KRD+AITEDCPPPPEFH +R++          
Sbjct: 180 NFEIQAQSINDFKTLLDKDERIIRHLVMKRDEAITEDCPPPPEFHAMRSQQ--------- 230

Query: 239 IDYDDEEYDDEYDDGEGDEMDD 260
              DDE  D+EY  G+ D+ DD
Sbjct: 231 --LDDEYIDEEY--GKADDADD 248

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555979|ref|XP_003546305.1| PREDICTED: uncharacterized protein LOC100790128 [Glycine max]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 147/257 (57%), Positives = 186/257 (72%), Gaps = 39/257 (15%)

Query: 2   ESLLHSTS--ATYLVPKFPK--LITYN--------QNSCLAFARN--------------- 34
           +SLL  +S   +Y +PK  K  ++T N         N CL FA                 
Sbjct: 4   KSLLQGSSLKPSYPLPKLSKTTMMTANCVRFSFNYNNPCLLFANGYPSSSSLPLSLQNKP 63

Query: 35  ----SVIVGAKRSNKKKNNNDNNKEDSHSFFSKADEDNLFFPEAVLLKEKKVQEDGRALP 90
               SVIV A++ +KK        ED+HS   K DE   FFPEAVLLK++ V+E+G+ LP
Sbjct: 64  RKSASVIVSARKKDKK--------EDTHSSVPKPDEVTGFFPEAVLLKKRTVEEEGKLLP 115

Query: 91  EFADDEEEKLYESLNIELESELNVERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKG 150
           EF D EE +L+E+L +EL+S+++VE  RHYEV+YLIHEK+EE+V +VNEK+QDFLREKKG
Sbjct: 116 EFEDAEERQLFEALMLELDSDMDVEILRHYEVMYLIHEKHEEEVAAVNEKIQDFLREKKG 175

Query: 151 RVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
           +VWRLNDWG+RRLAYKI+KA  AHY+L+NFEL+AK+INDFKT+LD+DE+VIRHLVIKRD+
Sbjct: 176 QVWRLNDWGMRRLAYKIKKANNAHYMLINFELDAKYINDFKTLLDQDERVIRHLVIKRDE 235

Query: 211 AITEDCPPPPEFHTLRA 227
           AITEDCPPPPEFHTLRA
Sbjct: 236 AITEDCPPPPEFHTLRA 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521055|gb|AFK48589.1| unknown [Lotus japonicus]

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 141/246 (57%), Positives = 177/246 (71%), Gaps = 17/246 (6%)

Query: 1   MESLLHST--SATYLVPKFPKLITY---------NQNSCLAFARNSVIVGAKRSNKKK-- 47
           ME+L   +  + +Y + + PK  T          + N C  FA +S    A+   +K   
Sbjct: 1   MEALFQGSCLAPSYPLLELPKSTTMLTNCVKFNLSHNPCFIFANSSRPFSAQSKPRKPFS 60

Query: 48  ----NNNDNNKEDSHSFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKLYES 103
                   + KED HSF SK DE    FPEAVLLK+K V+EDG  LPEF D EE KL+ES
Sbjct: 61  VIVNAQKKDKKEDHHSFVSKPDESAGLFPEAVLLKKKIVEEDGEFLPEFEDAEERKLFES 120

Query: 104 LNIELESELNVERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRL 163
           L +E++S+LNVE  RHYE+VYLIHEK+EE+V +VNEK+QDFLREKKG VWR +DWG+R L
Sbjct: 121 LMLEMDSDLNVELLRHYEIVYLIHEKHEEEVAAVNEKIQDFLREKKGTVWRFSDWGMRTL 180

Query: 164 AYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFH 223
           AYKI+KA KAHYILMN E++AK+IN+FKT+LD+DE+VIRHLV+KRD+AITEDCPPPPEFH
Sbjct: 181 AYKIKKANKAHYILMNIEMDAKYINEFKTLLDQDERVIRHLVVKRDEAITEDCPPPPEFH 240

Query: 224 TLRAEM 229
           TL A +
Sbjct: 241 TLGASV 246

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532493|ref|XP_003534806.1| PREDICTED: uncharacterized protein LOC100812111 [Glycine max]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 138/241 (57%), Positives = 179/241 (74%), Gaps = 26/241 (10%)

Query: 5   LHSTSATYLVPKFPKLITYNQNSCLAFARN------------------SVIVGAKRSNKK 46
           +H  S T ++       ++N NSCL FA                    SV+V A+R +KK
Sbjct: 18  IHKLSKTTMMTPNCVRFSFNYNSCLIFANGYPSSSLPLSLQNKPRKSASVVVSARRKDKK 77

Query: 47  KNNNDNNKEDSHSFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKLYESLNI 106
                   ED+HS   K DE   FFPEAVLLK++ V+E+G+ LPEF D +E +L+E+L +
Sbjct: 78  --------EDTHSSVPKPDEVTGFFPEAVLLKKRTVEEEGKLLPEFEDADERELFEALML 129

Query: 107 ELESELNVERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYK 166
           EL+S+++V+  RHYEV+YLIHEK+EE+V +VNEK+QDFLREKKG+VWRLNDWG+RRLAYK
Sbjct: 130 ELDSDMDVDILRHYEVMYLIHEKHEEEVVAVNEKIQDFLREKKGQVWRLNDWGMRRLAYK 189

Query: 167 IQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLR 226
           I+KA  AHY+L+NFEL+AK+INDFKT+LD+DE+VIRHLVIKRD+AITEDCPPPP+FHTLR
Sbjct: 190 IKKANNAHYMLINFELDAKYINDFKTLLDQDERVIRHLVIKRDEAITEDCPPPPDFHTLR 249

Query: 227 A 227
            
Sbjct: 250 G 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448827|ref|XP_003594689.1| 30S ribosomal protein S6 [Medicago truncatula] gi|124361112|gb|ABN09084.1| Ribosomal protein S6 [Medicago truncatula] gi|355483737|gb|AES64940.1| 30S ribosomal protein S6 [Medicago truncatula]

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 140/251 (55%), Positives = 180/251 (71%), Gaps = 36/251 (14%)

Query: 1   MESLLHSTSATYLVP--KFPKLITYNQNSCLAF------------------------ARN 34
           ME+L   +S  YL+P  K PK IT   ++ L F                           
Sbjct: 1   MEALFKGSS--YLLPSSKPPKTITMLASNPLRFNFPNHHLSSSSSFSRQFSLQNNPRKSF 58

Query: 35  SVIVGAKRSNKKKNNNDNNKEDSHSFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFAD 94
           S+I+ A++ +KK        ED+HSF  K+ E   FFPE+VLLK+K V+EDG+ LPEF D
Sbjct: 59  SLIMNARKKDKK--------EDTHSFVPKSYEATGFFPESVLLKKKTVEEDGKLLPEFED 110

Query: 95  DEEEKLYESLNIELESELNVERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWR 154
           D+E KLYESL +++E++++VE  RHYE+VYLIHEK+ E+V +VNEKVQDFLREKKGRVWR
Sbjct: 111 DDERKLYESLKLDVETDMDVELLRHYEIVYLIHEKHAEEVVAVNEKVQDFLREKKGRVWR 170

Query: 155 LNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITE 214
            +DWG+R+LAYKIQKA  AHYILMNFE++AK+IN+ KT+LD+DE+VIRHLVIKRD+AITE
Sbjct: 171 FSDWGMRKLAYKIQKANNAHYILMNFEMDAKYINELKTLLDRDERVIRHLVIKRDEAITE 230

Query: 215 DCPPPPEFHTL 225
           DCPPPPEF+T 
Sbjct: 231 DCPPPPEFNTF 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834614|ref|XP_002885189.1| hypothetical protein ARALYDRAFT_318480 [Arabidopsis lyrata subsp. lyrata] gi|297331029|gb|EFH61448.1| hypothetical protein ARALYDRAFT_318480 [Arabidopsis lyrata subsp. lyrata]

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 135/234 (57%), Positives = 180/234 (76%), Gaps = 11/234 (4%)

Query: 1   MESLLHSTSATYLVPKFPKLITYNQNSCLAFARNSVIVGAKRSNKKK-------NNNDNN 53
           MESLLH++S+  LV   P++    ++S +  +R  +     R   K            + 
Sbjct: 1   MESLLHASSS--LVSLRPRI--DGRDSFINPSRVCLNPSLGRRGSKPLPLVAAAKKKKSK 56

Query: 54  KEDSHSFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKLYESLNIELESELN 113
           K+D+HSF ++ DE    FPE++LLKEKK+ E+G  LPEFAD EE++LYE L+++L+S+LN
Sbjct: 57  KDDNHSFSARPDEATGPFPESILLKEKKIDEEGDLLPEFADAEEKELYEFLDLQLQSDLN 116

Query: 114 VERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKA 173
            ER RHYEVVYLIHEK+ E+V S+N+KVQDFL+EKKG+VWR +DWG+RRLAYKIQKA+ A
Sbjct: 117 EERMRHYEVVYLIHEKHAEEVESINQKVQDFLKEKKGKVWRFSDWGMRRLAYKIQKAENA 176

Query: 174 HYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLRA 227
           HYILMNFE+EAK++N+FK +LD DE+VIRHLV+KRD+AITEDCPPPPEFH++RA
Sbjct: 177 HYILMNFEIEAKYLNEFKGLLDSDERVIRHLVMKRDEAITEDCPPPPEFHSVRA 230

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2086112	314	RFC3 "REGULATOR OF FATTY-ACID	0.744	0.722	0.534	3.7e-62
TIGR_CMR|CBU_0864	127	CBU_0864 "ribosomal protein S6	0.318	0.763	0.453	1.9e-19
TIGR_CMR|SO_3930	131	SO_3930 "ribosomal protein S6"	0.327	0.763	0.41	9.5e-18
TIGR_CMR|CPS_0415	143	CPS_0415 "ribosomal protein S6	0.327	0.699	0.38	1.2e-17
UNIPROTKB|Q9KUZ2	122	rpsF "30S ribosomal protein S6	0.318	0.795	0.381	6.7e-17
TIGR_CMR|VC_0366	122	VC_0366 "ribosomal protein S6"	0.318	0.795	0.381	6.7e-17
UNIPROTKB|P02358	135	rpsF [Escherichia coli K-12 (t	0.327	0.740	0.39	1.4e-16
TIGR_CMR|CHY_0035	96	CHY_0035 "ribosomal protein S6	0.304	0.968	0.340	1.4e-14
TIGR_CMR|GSU_0665	117	GSU_0665 "ribosomal protein S6	0.327	0.854	0.306	3.6e-11
TIGR_CMR|BA_5723	96	BA_5723 "ribosomal protein S6"	0.304	0.968	0.297	1.1e-10

TAIR|locus:2086112 RFC3 "REGULATOR OF FATTY-ACID COMPOSITION 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
 Identities = 123/230 (53%), Positives = 161/230 (70%)

Query:     1 MESLLH-STSATYLVPKFPKLITYNQNSCLAFARNSVIVGAKRS--XXXXXXXXXXXEDS 57
             MESLLH S+S   L P+     ++   S +    +    G+K               +D+
Sbjct:     1 MESLLHASSSLVSLRPRIDGRDSFINPSRVCLNPSLGRRGSKPLPLVAAAKKKKSKKDDN 60

Query:    58 HSFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKXXXXXXXXXXXXXXVERR 117
             H+F ++ DE    FPE++LLKEKK+ E+G  LPEFAD EE++               ER 
Sbjct:    61 HNFSARPDEATGPFPESILLKEKKIDEEGDLLPEFADAEEKELYQFLDLQLQSDLNEERM 120

Query:   118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
             RHYEVVYLIHEK+ E+V S+N+KVQD+L+EKKG+VWR +DWG+RRLAYKIQKA+ AHYIL
Sbjct:   121 RHYEVVYLIHEKHAEEVESINQKVQDYLKEKKGKVWRFSDWGMRRLAYKIQKAENAHYIL 180

Query:   178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLRA 227
             MNFE+EAK++N+FK +LD DE+VIRHLV+KRD+AITEDCPPPPEFH++RA
Sbjct:   181 MNFEIEAKYLNEFKGLLDSDERVIRHLVMKRDEAITEDCPPPPEFHSVRA 230

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0019843 "rRNA binding" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TIGR_CMR|CBU_0864 CBU_0864 "ribosomal protein S6" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 44/97 (45%), Positives = 63/97 (64%)

Query:   118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
             RHYE+V L+H      V ++ E+ Q  ++EK G+V RL DWG R+LAY I K  KAHY+L
Sbjct:     2 RHYEIVILVHPDQSSQVPAMVERYQSMIKEKDGKVHRLEDWGRRQLAYSIDKVHKAHYLL 61

Query:   178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITE 214
             MN E +   I++ +     ++ VIR L++KRD AIT+
Sbjct:    62 MNIESDQGVISELENAFRYNDAVIRSLILKRDHAITK 98

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|SO_3930 SO_3930 "ribosomal protein S6" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 41/100 (41%), Positives = 62/100 (62%)

Query:   118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
             RHYE+V+++H    E V  + E+    + E  G++ RL DWG R+LAY IQ   KAHY+L
Sbjct:     2 RHYEIVFMVHPDQSEQVPGMIERYTGAITEANGKIHRLEDWGRRQLAYPIQDLHKAHYVL 61

Query:   178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
             MN E  A+ I + +T    ++ V+R++V++   AITE  P
Sbjct:    62 MNVEAPAETIEELETAFRFNDAVLRNMVMRTKGAITEASP 101

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CPS_0415 CPS_0415 "ribosomal protein S6" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 38/100 (38%), Positives = 62/100 (62%)

Query:   118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
             RHYE+V+++H    E V  + ++  D +   +G++ RL DWG R+LAY I K  KAHY+L
Sbjct:     2 RHYEIVFMVHPDQSEQVSGMIQRYTDLINAAEGKIHRLEDWGRRQLAYPINKLHKAHYVL 61

Query:   178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
             MN E     I++ +T    ++ VIR+++++   A+TE  P
Sbjct:    62 MNIEAPQVVIDELETAFRYNDVVIRNMIMRTKDAVTEASP 101

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

UNIPROTKB|Q9KUZ2 rpsF "30S ribosomal protein S6" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 37/97 (38%), Positives = 61/97 (62%)

Query:   118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
             RHYE+V+++H    E V  + E+    + E  G++ RL DWG R+LAY I K  KAHY+L
Sbjct:     2 RHYEIVFMVHPDQSEQVAGMIERYTGSITEAGGKIHRLEDWGRRQLAYPINKLHKAHYVL 61

Query:   178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITE 214
             MN E +   +++ +T    ++ V+R+++++   AITE
Sbjct:    62 MNVEADQAVVDELETAFRFNDAVLRNMIMRTKAAITE 98

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_0366 VC_0366 "ribosomal protein S6" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 37/97 (38%), Positives = 61/97 (62%)

Query:   118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
             RHYE+V+++H    E V  + E+    + E  G++ RL DWG R+LAY I K  KAHY+L
Sbjct:     2 RHYEIVFMVHPDQSEQVAGMIERYTGSITEAGGKIHRLEDWGRRQLAYPINKLHKAHYVL 61

Query:   178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITE 214
             MN E +   +++ +T    ++ V+R+++++   AITE
Sbjct:    62 MNVEADQAVVDELETAFRFNDAVLRNMIMRTKAAITE 98

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P02358 rpsF [Escherichia coli K-12 (taxid:83333)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 39/100 (39%), Positives = 61/100 (61%)

Query:   118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
             RHYE+V+++H    E V  + E+    +   +G++ RL DWG R+LAY I K  KAHY+L
Sbjct:     2 RHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVL 61

Query:   178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
             MN E   + I++ +T    ++ VIR +V++   A+TE  P
Sbjct:    62 MNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASP 101

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

TIGR_CMR|CHY_0035 CHY_0035 "ribosomal protein S6" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 32/94 (34%), Positives = 62/94 (65%)

Query:   118 RHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
             R YEV+Y++H + + E   S+ E+ +  + ++ G V +++ WG RR AY+I+K ++ +Y+
Sbjct:     3 RQYEVMYILHPELDAEKTESIIERFKGMIEQEGGEVTKIDRWGKRRFAYEIKKLREGYYV 62

Query:   177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
             +MNF+ +A+   +   +L   + V+RH+VI+ DK
Sbjct:    63 VMNFKAKAETAQELDRLLRISDDVVRHIVIREDK 96

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_0665 GSU_0665 "ribosomal protein S6" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 154 (59.3 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 31/101 (30%), Positives = 57/101 (56%)

Query:   118 RHYEVVYLIH-EKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
             R YE + ++  E  ++++  +  KV D +   KG + RL DWG+R+LAY ++K+ +  Y 
Sbjct:     3 RMYETIVIVQPELGDDELKGLTAKVTDIIGSFKGVLHRLEDWGVRKLAYPVKKSVRGRYY 62

Query:   177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
              + F+ +A  I + +  L  D+KV+R+  +K +K      P
Sbjct:    63 YVRFDGDAPLIAELERRLRLDDKVLRYQSVKLEKEAAAPAP 103

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|BA_5723 BA_5723 "ribosomal protein S6" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 150 (57.9 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 28/94 (29%), Positives = 53/94 (56%)

Query:   118 RHYEVVYLIHEKYEEDVG-SVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
             R YE++Y+I    EE+   ++ E+    L      +    +WG RRLAY+I   ++  Y+
Sbjct:     2 RKYEIMYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLREGFYM 61

Query:   177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
             ++N    A+ IN+F  +   +E ++RH+V+K ++
Sbjct:    62 ILNVNANAEAINEFDRLAKINEDILRHIVVKEEE 95

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00080953	hypothetical protein (319 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.163.69.1	SubName- Full=Putative uncharacterized protein; (192 aa)	•			•	•		•		0.694
	gw1.X.4521.1	SubName- Full=Putative uncharacterized protein; (118 aa)				•			•		0.455
	gw1.IV.3048.1	SubName- Full=Putative uncharacterized protein; (227 aa)				•	•		•		0.438
	gw1.16155.2.1	Predicted protein (206 aa)				•	•		•		0.434

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	305
PRK00453	108	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	6e-27
pfam01250	92	pfam01250, Ribosomal_S6, Ribosomal protein S6	1e-25
COG0360	112	COG0360, RpsF, Ribosomal protein S6 [Translation,	2e-24
TIGR00166	93	TIGR00166, S6, ribosomal protein S6	2e-21
CHL00123	97	CHL00123, rps6, ribosomal protein S6; Validated	2e-11
PRK14074	257	PRK14074, rpsF, 30S ribosomal protein S6; Provisio	6e-04

>gnl|CDD|179034 PRK00453, rpsF, 30S ribosomal protein S6; Reviewed

 Score =  101 bits (253), Expect = 6e-27
 Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 118 RHYEVVYLIH-EKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
           R YE+V+++  +  EE V ++ E+ +  + E  G + ++ DWG RRLAY I K +K HY+
Sbjct: 2   RKYEIVFILRPDLSEEQVKALVERFKGVITENGGTIHKVEDWGRRRLAYPINKLRKGHYV 61

Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITE 214
           L+NFE     I + + +   +E V+R L +K ++A  E
Sbjct: 62  LLNFEAPPAAIAELERLFRINEDVLRFLTVKVEEAEEE 99

Length = 108

>gnl|CDD|216388 pfam01250, Ribosomal_S6, Ribosomal protein S6

 Score = 97.5 bits (244), Expect = 1e-25
 Identities = 33/92 (35%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 118 RHYEVVYLIH-EKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
           R YE ++++  +  EE+V ++ EK +  + E  G V ++ DWG R+LAY I+K ++ +Y+
Sbjct: 1   RKYETMFILRPDLSEEEVKALIEKYKKLIEENGGEVVKVEDWGKRKLAYPIKKKREGYYV 60

Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKR 208
           L+NFE E + I + +  L  +E V+R L +K 
Sbjct: 61  LINFEAEPEAIAELERRLRINEDVLRFLTVKL 92

Length = 92

>gnl|CDD|223437 COG0360, RpsF, Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]

 Score = 95.0 bits (237), Expect = 2e-24
 Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 1/101 (0%)

Query: 118 RHYEVVYLIH-EKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
           R YE+V+++  +  EE V ++ EK +  L    G + ++ DWG RRLAY I+K ++ HY+
Sbjct: 1   RKYEIVFIVRPDLSEEQVAALVEKYKGVLTNNGGEIHKVEDWGKRRLAYPIKKLREGHYV 60

Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
           LMNFE E   I + + +L  +E V+RHL+IK +KA  E  P
Sbjct: 61  LMNFEAEPAAIAELERLLRINEDVLRHLIIKVEKAKEELSP 101

Length = 112

>gnl|CDD|129270 TIGR00166, S6, ribosomal protein S6

 Score = 85.9 bits (213), Expect = 2e-21
 Identities = 36/93 (38%), Positives = 55/93 (59%)

Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+++L+     E+V    E+ +  +      + R  DWG RRLAY I+K  +AHY+L
Sbjct: 1   RHYEIIFLVRPTLSEEVKGQIERYKKVITLNGAEIVRSEDWGKRRLAYPIKKQLRAHYVL 60

Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
           MNF  EA+ I +F+     ++ VIR L+IK + 
Sbjct: 61  MNFSGEAQVIKEFERTARINDNVIRSLIIKLEH 93

The ribosomal protein S6 ortholog family, including yeast MRP17, shows more than two-fold length variation from 95 residues in Bacillus subtilis to 215 in Mycoplasma pneumoniae. This length variation comes primarily from poorly conserved C-terminal extensions that are particularly long in the Mycoplasmas. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 93

>gnl|CDD|177046 CHL00123, rps6, ribosomal protein S6; Validated

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 120 YEVVYLIHEKY-EEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILM 178
           YE +YL+     EE++    E  +  LR++  +   + + G R+L+YKI K +   YI M
Sbjct: 8   YETMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQM 67

Query: 179 NFELEAKWINDFKTMLDKDEKVIRHLVIK 207
           N+    K +N  +  L  DE V+R+L  K
Sbjct: 68  NYSGNGKLVNSLEKALKLDENVLRYLTFK 96

Length = 97

>gnl|CDD|172564 PRK14074, rpsF, 30S ribosomal protein S6; Provisional

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 158 WGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
           WGL   AY I K K  HY +M     +  +++F   +  +E +IRHL ++ DK
Sbjct: 187 WGLLDFAYPINKMKSGHYCIMCISSTSSIMDEFVRRMKLNENIIRHLSVQVDK 239

Length = 257

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
CHL00123	97	rps6 ribosomal protein S6; Validated	99.96
PRK00453	108	rpsF 30S ribosomal protein S6; Reviewed	99.96
COG0360	112	RpsF Ribosomal protein S6 [Translation, ribosomal	99.96
TIGR00166	93	S6 ribosomal protein S6. MRP17 protein is a compon	99.96
PF01250	92	Ribosomal_S6: Ribosomal protein S6; InterPro: IPR0	99.95
PRK14074	257	rpsF 30S ribosomal protein S6; Provisional	99.82
KOG4708	141	consensus Mitochondrial ribosomal protein MRP17 [T	99.65
PRK14074	257	rpsF 30S ribosomal protein S6; Provisional	97.17
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	93.56
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	93.21
PF09026	101	CENP-B_dimeris: Centromere protein B dimerisation	89.24
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	84.87
PF04931	784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	83.19

>CHL00123 rps6 ribosomal protein S6; Validated

Probab=99.96  E-value=1.1e-29  Score=204.60  Aligned_cols=94  Identities=30%  Similarity=0.525  Sum_probs=90.4

Q ss_pred             ccCcCcceEEEecCCCh-HhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHH
Q 021931          115 ERRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTM  193 (305)
Q Consensus       115 ~~MR~YEimlILrP~le-EEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~  193 (305)
                      .+||+||+|+|++|+++ +++++++++++++|.++||+|+++++||+|+|||+|+|+++|+|++++|.++|++|++|++.
T Consensus         3 ~~mr~YE~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~   82 (97)
T CHL00123          3 SKLNKYETMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKA   82 (97)
T ss_pred             CcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHH
Confidence            36899999999999985 57999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCeeEEEEEee
Q 021931          194 LDKDEKVIRHLVIKR  208 (305)
Q Consensus       194 LrLDE~VLR~LIVK~  208 (305)
                      |+++++|||||++|.
T Consensus        83 lri~e~VlR~m~vk~   97 (97)
T CHL00123         83 LKLDENVLRYLTFKK   97 (97)
T ss_pred             hCCCCCeEEEEEEeC
Confidence            999999999999973

>PRK00453 rpsF 30S ribosomal protein S6; Reviewed

Probab=99.96  E-value=3.8e-29  Score=203.04  Aligned_cols=103  Identities=35%  Similarity=0.682  Sum_probs=97.7

Q ss_pred             CcCcceEEEecCCC-hHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHHhC
Q 021931          117 RRHYEVVYLIHEKY-EEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLD  195 (305)
Q Consensus       117 MR~YEimlILrP~l-eEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~Lr  195 (305)
                      |++||+|+|++|.+ +++++++++++.++|.+.||+|+++++||.|+|||+|+|+.+|+|++|+|.++|+++++|++.|+
T Consensus         1 M~~YE~~~il~~~~~~~~~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~l~   80 (108)
T PRK00453          1 MRKYEIVFILRPDLSEEQVKALVERFKGVITENGGTIHKVEDWGRRRLAYPINKLRKGHYVLLNFEAPPAAIAELERLFR   80 (108)
T ss_pred             CCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEecccccccceEcCCCcEEEEEEEEEEeCHHHHHHHHHHhC
Confidence            89999999999997 46899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEEEeecCCCCCCCCCC
Q 021931          196 KDEKVIRHLVIKRDKAITEDCPPP  219 (305)
Q Consensus       196 LDE~VLR~LIVK~ek~i~e~~p~~  219 (305)
                      +|++|||||++|+++...+..+..
T Consensus        81 ~~~~VlR~~~vk~~~~~~~~~~~~  104 (108)
T PRK00453         81 INEDVLRFLTVKVEEAEEEPSPMM  104 (108)
T ss_pred             CCCCeEEEEEEEecccccccChhh
Confidence            999999999999998877666544

>COG0360 RpsF Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.3e-29  Score=210.64  Aligned_cols=103  Identities=40%  Similarity=0.727  Sum_probs=98.4

Q ss_pred             cCcceEEEecCCCh-HhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHHhCC
Q 021931          118 RHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDK  196 (305)
Q Consensus       118 R~YEimlILrP~le-EEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~LrL  196 (305)
                      ++||+|||++|+++ ++++++++++.++|+++||+|.++++||+|+|||+|+|+++|||++|+|+|+|+++++|+|.|++
T Consensus         1 ~~YEi~~iv~p~~see~~~~~ve~~~~~l~~~gg~i~~~e~wG~R~LAY~IkK~~~g~Y~l~~f~~~~~~i~Eler~~ri   80 (112)
T COG0360           1 RKYEIVFIVRPDLSEEQVAALVEKYKGVLTNNGGEIHKVEDWGKRRLAYPIKKLREGHYVLMNFEAEPAAIAELERLLRI   80 (112)
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEehhhhhhhhcceecccceEEEEEEEEEcCHHHHHHHHHHhcc
Confidence            46999999999986 57999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEEeecCCCCCCCCCCC
Q 021931          197 DEKVIRHLVIKRDKAITEDCPPPP  220 (305)
Q Consensus       197 DE~VLR~LIVK~ek~i~e~~p~~~  220 (305)
                      +++||||||||.+......+++.+
T Consensus        81 n~~VlR~liik~~~~~~~~~~~~~  104 (112)
T COG0360          81 NEDVLRHLIIKVEKAKEELSPMLK  104 (112)
T ss_pred             chhhheeeEEEechhhcccchhhh
Confidence            999999999999999888887753

>TIGR00166 S6 ribosomal protein S6

Probab=99.96  E-value=1.5e-28  Score=194.82  Aligned_cols=92  Identities=39%  Similarity=0.709  Sum_probs=89.0

Q ss_pred             cCcceEEEecCCChHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHHhCCC
Q 021931          118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKD  197 (305)
Q Consensus       118 R~YEimlILrP~leEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~LrLD  197 (305)
                      ++||+|+|++|+.+++++++++++.++|.++||+|+++++||.|+|||+|+|+++|+|++|+|+++|++|++|++.|++|
T Consensus         1 ~~YE~~~Il~p~~~~~~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LaY~I~k~~~G~Y~~~~f~~~~~~i~el~~~lr~~   80 (93)
T TIGR00166         1 RHYEIIFLVRPTLSEEVKGQIERYKKVITLNGAEIVRSEDWGKRRLAYPIKKQLRAHYVLMNFSGEAQVIKEFERTARIN   80 (93)
T ss_pred             CceeEEEEECCCCcHHHHHHHHHHHHHHHhCCCEEEEEEeecceecceEcCCCceEEEEEEEEEeCHHHHHHHHHHhcCC
Confidence            57999999999987669999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEEeec
Q 021931          198 EKVIRHLVIKRD  209 (305)
Q Consensus       198 E~VLR~LIVK~e  209 (305)
                      ++|||||++|++
T Consensus        81 ~~VlR~~~vk~~   92 (93)
T TIGR00166        81 DNVIRSLIIKLE   92 (93)
T ss_pred             cCeEEEEEEEec
Confidence            999999999975

MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.

>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.95  E-value=2.3e-27  Score=186.27  Aligned_cols=91  Identities=34%  Similarity=0.718  Sum_probs=86.6

Q ss_pred             cCcceEEEecCCCh-HhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHHhCC
Q 021931          118 RHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDK  196 (305)
Q Consensus       118 R~YEimlILrP~le-EEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~LrL  196 (305)
                      |.||+|+|++|+.+ ++++++++++.++|.++||+|+++++||.|+|||+|+|+.+|+|++|+|+++|+++++|++.|++
T Consensus         1 r~YE~~~il~~~~~~~~~~~~~~~~~~~i~~~gg~v~~~~~~G~r~LaY~i~k~~~G~Y~~~~f~~~~~~i~el~~~l~~   80 (92)
T PF01250_consen    1 RKYELMFILRPDLSEEEIKKLIERVKKIIEKNGGVVRSVENWGKRRLAYPIKKQKEGHYFLFNFDASPSAIKELERKLRL   80 (92)
T ss_dssp             EEEEEEEEE-TTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEESSEETTECEEEEEEEEEEESTTHHHHHHHHHHT
T ss_pred             CceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEeecccccCCCCCCEEEEEEEEEEeCHHHHHHHHHHhcC
Confidence            57999999999975 58999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEEee
Q 021931          197 DEKVIRHLVIKR  208 (305)
Q Consensus       197 DE~VLR~LIVK~  208 (305)
                      |++|||||++|.
T Consensus        81 ~~~VlR~~~vK~   92 (92)
T PF01250_consen   81 DEDVLRYLIVKK   92 (92)
T ss_dssp             STTEEEEEEEE-
T ss_pred             CCCeEEEEEEeC
Confidence            999999999984

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....

>PRK14074 rpsF 30S ribosomal protein S6; Provisional

Probab=99.82  E-value=1.5e-20  Score=173.91  Aligned_cols=111  Identities=22%  Similarity=0.337  Sum_probs=94.2

Q ss_pred             HHHHHHHhHHhhhhh-ccccCcCcceEEEecCCChHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEE
Q 021931           98 EKLYESLNIELESEL-NVERRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI  176 (305)
Q Consensus        98 ~~l~~~l~~~~~s~~-~~~~MR~YEimlILrP~leEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yv  176 (305)
                      +.+-+||---+|..+ +..         |++|   ++++++++++.++|+++|  +.++++||+|+|||||+|+++|+|+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~---------Iv~P---DQveevvEkik~iIe~~G--iikvE~WGkRkLAYpIkK~~eGyYv  205 (257)
T PRK14074        140 ENISEHLIKIFQDILKDFR---------INGP---NQSNKTLEMLLKNIEASG--LIKYEYWGLLDFAYPINKMKSGHYC  205 (257)
T ss_pred             HHHHHHHHHHHHHHHHhcC---------CCCH---HHHHHHHHHHHHHHHhcC--eeehHhhcchhhccccCCCCeEEEE
Confidence            344456655555554 322         3344   577788999999999995  6799999999999999999999999


Q ss_pred             EEEEEeCcchHHHHHHHhCCCCCeeEEEEEeecCCCCCCCCCCCCc
Q 021931          177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEF  222 (305)
Q Consensus       177 lm~Fea~psaIkELer~LrLDE~VLR~LIVK~ek~i~e~~p~~~ef  222 (305)
                      +|+|.++|++|++|+|.||++++|||||+||++++..+++|+.++.
T Consensus       206 L~nFeAep~aIaELER~lRInE~VIRfLtVKlDe~~~~pSpimkk~  251 (257)
T PRK14074        206 IMCISSTSSIMDEFVRRMKLNENIIRHLSVQVDKFFEGKSYMMNKQ  251 (257)
T ss_pred             EEEEEcCHHHHHHHHHHhcCccceeeEEEEeeccccccCChhhhhh
Confidence            9999999999999999999999999999999999999999988654

>KOG4708 consensus Mitochondrial ribosomal protein MRP17 [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=4.7e-17  Score=140.14  Aligned_cols=96  Identities=25%  Similarity=0.408  Sum_probs=89.6

Q ss_pred             cCcCcceEEEecCCChHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCC----CCeEEEEEEEEEeCcchHHHHH
Q 021931          116 RRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQK----AKKAHYILMNFELEAKWINDFK  191 (305)
Q Consensus       116 ~MR~YEimlILrP~leEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK----~keG~Yvlm~Fea~psaIkELe  191 (305)
                      .|+.||+++|+++....+...++.+..+.+...||.|+.++++|.|.|+|+|+|    |..|+||+|.|.++|++..+|.
T Consensus         2 lmp~yelali~~~~~rpela~~l~rt~~~lid~ngVvrdveslG~r~Lpy~i~K~~~~h~~g~~f~m~f~ss~~v~~ei~   81 (141)
T KOG4708|consen    2 LMPLYELALITRSLSRPELAKLLARTGGHLIDRNGVVRDVESLGKRELPYKIKKLDQRHYRGQHFLMTFYSSPAVQSEIK   81 (141)
T ss_pred             cchHHHHHHHhcccCCHHHHHHHHHHhhHHhhcCCeEeechhcchhhhcchHHHhcCccccceEEEEeecCCHHHHHHHH
Confidence            699999999999998777778888888888888999999999999999999996    6789999999999999999999


Q ss_pred             HHhCCCCCeeEEEEEeecCC
Q 021931          192 TMLDKDEKVIRHLVIKRDKA  211 (305)
Q Consensus       192 r~LrLDE~VLR~LIVK~ek~  211 (305)
                      +.|+.|.+|||+++||++..
T Consensus        82 ~~l~~D~dviR~~IVKv~~~  101 (141)
T KOG4708|consen   82 RILKRDPDVIRWLIVKVDDI  101 (141)
T ss_pred             HHHhcChhhHHhhheecccc
Confidence            99999999999999999984

>PRK14074 rpsF 30S ribosomal protein S6; Provisional

Probab=97.17  E-value=0.00035  Score=65.95  Aligned_cols=46  Identities=15%  Similarity=0.234  Sum_probs=43.3

Q ss_pred             CcCcceEEEecCCChH-hHHHHHHHHHHHHHhCCCEEEEEEeeeccc
Q 021931          117 RRHYEVVYLIHEKYEE-DVGSVNEKVQDFLREKKGRVWRLNDWGLRR  162 (305)
Q Consensus       117 MR~YEimlILrP~leE-EVkalvekv~~iL~e~GG~I~kvEdWG~Rr  162 (305)
                      |+.||.+||.+++++. ++..+++.+..+|.++||.|...+.||.+.
T Consensus         1 m~lYE~~fIa~q~ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~   47 (257)
T PRK14074          1 MNLYEFTFIAQQGLLQQEVEEMVQELAVLLKNIKADVMFQQIKGILE   47 (257)
T ss_pred             CCccceeeeecccccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhh
Confidence            8999999999999865 899999999999999999999999999864

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=93.56  E-value=0.056  Score=55.09  Aligned_cols=20  Identities=35%  Similarity=0.559  Sum_probs=11.9

Q ss_pred             CCCCCCCCCCceEEEeCCCC
Q 021931          259 DDNVDDDFEHGFSIVNVDDN  278 (305)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~  278 (305)
                      .++|.-|.|.||---|+.++
T Consensus        98 ddG~~TDnE~GFAdSDDEdD  117 (458)
T PF10446_consen   98 DDGNETDNEAGFADSDDEDD  117 (458)
T ss_pred             ccCccCcccccccccccccc
Confidence            34666678888765443333

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=93.21  E-value=0.061  Score=59.22  Aligned_cols=57  Identities=9%  Similarity=0.174  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHhCCC--------EEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHH
Q 021931          134 VGSVNEKVQDFLREKKG--------RVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFK  191 (305)
Q Consensus       134 Vkalvekv~~iL~e~GG--------~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELe  191 (305)
                      +++.+-++-.+-...||        .|++.+-|.+|.|--- ..--.=.-..+.|+..+..+-.+.
T Consensus      1256 ~~~aIh~FD~ft~~~~G~FHP~g~eVIINSEIwD~RTF~lL-h~VP~Ldqc~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1256 IPEAIHRFDQFTDYGGGGFHPSGNEVIINSEIWDMRTFKLL-HSVPSLDQCAVTFNSTGDVMYAML 1320 (1516)
T ss_pred             cHHHHhhhhhheecccccccCCCceEEeechhhhhHHHHHH-hcCccccceEEEeccCccchhhhh
Confidence            34555555554333333        5889999999876421 111122234566776666555444

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box

Probab=89.24  E-value=0.11  Score=43.38  Aligned_cols=21  Identities=19%  Similarity=0.336  Sum_probs=0.0

Q ss_pred             CccchhhccCCCCCccCCCCC
Q 021931          221 EFHTLRAEMHGYDEEEDDIDY  241 (305)
Q Consensus       221 ef~s~~~~~d~~~~~~~~~~~  241 (305)
                      -||-+.+..|.+.|.++++++
T Consensus         2 ~~~~~eg~~dse~dsdEdeee   22 (101)
T PF09026_consen    2 TLHFLEGEEDSESDSDEDEEE   22 (101)
T ss_dssp             ---------------------
T ss_pred             ceeecccCcccccccccchhh
Confidence            455566666655554444333

CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=84.87  E-value=0.76  Score=44.69  Aligned_cols=14  Identities=29%  Similarity=0.408  Sum_probs=6.6

Q ss_pred             EEEeecCCCCCCCC
Q 021931          204 LVIKRDKAITEDCP  217 (305)
Q Consensus       204 LIVK~ek~i~e~~p  217 (305)
                      -.+|.++...-+||
T Consensus       200 Kg~ky~k~k~~PCP  213 (314)
T PF06524_consen  200 KGFKYEKGKPIPCP  213 (314)
T ss_pred             cccccccCCCCCCC
Confidence            33555554444444

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar

Probab=83.19  E-value=1.3  Score=47.56  Aligned_cols=10  Identities=20%  Similarity=0.574  Sum_probs=4.0

Q ss_pred             HhCCCCCeeE
Q 021931          193 MLDKDEKVIR  202 (305)
Q Consensus       193 ~LrLDE~VLR  202 (305)
                      .|......||
T Consensus       597 lls~~s~llR  606 (784)
T PF04931_consen  597 LLSQPSALLR  606 (784)
T ss_pred             HHhCcchHHH
Confidence            3333344444

The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	305
1p6g_F	135	Real Space Refined Coordinates Of The 30s Subunit F		5e-17
3sfs_F	131	Crystal Structure Of Release Factor Rf3 Trapped In		5e-17
3fih_F	100	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		4e-16
2gy9_F	95	Structure Of The 30s Subunit Of A Pre-Translocation		7e-14
2j5a_A	110	Folding Of S6 Structures With Divergent Amino-Acid		5e-09
3r3t_A	99	Crystal Structure Of 30s Ribosomal Protein S From B		4e-08

>pdb|1P6G|F Chain F, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 135

Iteration: 1
 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 61/100 (61%)
Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+V+++H    E V  + E+    +   +G++ RL DWG R+LAY I K  KAHY+L
Sbjct: 2   RHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVL 61
Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
           MN E   + I++ +T    ++ VIR +V++   A+TE  P
Sbjct: 62  MNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASP 101

>pdb|3SFS|F Chain F, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome Length = 131

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 61/100 (61%)
Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+V+++H    E V  + E+    +   +G++ RL DWG R+LAY I K  KAHY+L
Sbjct: 2   RHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVL 61
Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
           MN E   + I++ +T    ++ VIR +V++   A+TE  P
Sbjct: 62  MNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASP 101

>pdb|3FIH|F Chain F, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 100

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 60/97 (61%)
Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+V+++H    E V  + E+    +   +G++ RL DWG R+LAY I K  KAHY+L
Sbjct: 2   RHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVL 61
Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITE 214
           MN E   + I++ +T    ++ VIR +V++   A+TE
Sbjct: 62  MNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTE 98

>pdb|2GY9|F Chain F, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 95

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+V+++H    E V  + E+    +   +G++ RL DWG R+LAY I K  KAHY+L
Sbjct: 2   RHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVL 61
Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKA 211
           MN E   + I++ +T    ++ VIR +V++   A
Sbjct: 62  MNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHA 95

>pdb|2J5A|A Chain A, Folding Of S6 Structures With Divergent Amino-Acid Composition: Pathway Flexibility Within Partly Overlapping Foldons Length = 110

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 118 RHYEVVYLIHEKY-EEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
           R+YE V+ +     EE++    E+V++F+++K G +    DWG+R+LAY IQK   A Y 
Sbjct: 8   RYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYF 67
Query: 177 LMNFELEAKWI-NDFKTMLDKDEKVIRHLVIK 207
           L+ F+ E   + N+    L  DE VIR L I+
Sbjct: 68  LVQFKTENPQLPNELDFQLKIDEDVIRWLNIQ 99

>pdb|3R3T|A Chain A, Crystal Structure Of 30s Ribosomal Protein S From Bacillus Anthracis Length = 99

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 118 RHYEVVYLIHEKYEEDVG-SVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
           R YE+ Y+I    EE+   ++ E+    L      +    +WG RRLAY+I   ++  Y 
Sbjct: 5   RKYEIXYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLREGFYX 64
Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
           ++N    A+ IN+F  +   +E ++RH+V+K ++
Sbjct: 65  ILNVNANAEAINEFDRLAKINEDILRHIVVKEEE 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
3r8n_F	100	30S ribosomal protein S6; protein biosynthesis, RN	9e-34
3i1m_F	135	30S ribosomal protein S6; ribosome structure, prot	2e-31
1cqm_A	101	Ribosomal protein S6; alzheimer disease, oligomeri	3e-27
2j5a_A	110	30S ribosomal protein S6; ribonucleoprotein, RIBO	1e-26
3r3t_A	99	30S ribosomal protein S6; structural genomics, cen	4e-26
1vmb_A	140	30S ribosomal protein S6; TM0603, structural genom	1e-23
3bbn_F	168	Ribosomal protein S6; small ribosomal subunit, spi	9e-22
2kjw_A	96	TS9, 30S ribosomal protein S6; S6 permutant, solut	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ... Length = 135

 Score =  113 bits (284), Expect = 2e-31
 Identities = 43/134 (32%), Positives = 70/134 (52%)

Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+V+++H    E V  + E+    +   +G++ RL DWG R+LAY I K  KAHY+L
Sbjct: 2   RHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVL 61

Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLRAEMHGYDEEED 237
           MN E   + I++ +T    ++ VIR +V++   A+TE  P        R     +  E  
Sbjct: 62  MNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETA 121

Query: 238 DIDYDDEEYDDEYD 251
           D     +  ++E +
Sbjct: 122 DDAEAGDSEEEEEE 135

>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ... Length = 101

 Score =  101 bits (253), Expect = 3e-27
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 118 RHYEVVYLIHEKYEED-VGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
           R YEV  +++   ++  +    E +Q  L     RV ++   GLRRLAY I K  + +++
Sbjct: 2   RRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFL 61

Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITE 214
               E+    +ND    L   + V R +V+K  +    
Sbjct: 62  WYQVEMPEDRVNDLARELRIRDNVRRVMVVKSQEPFLA 99

>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1 Length = 110

 Score =  100 bits (250), Expect = 1e-26
 Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 2/99 (2%)

Query: 118 RHYEVVYLIH-EKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
           R+YE V+ +     EE++    E+V++F+++K G +    DWG+R+LAY IQK   A Y 
Sbjct: 8   RYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYF 67

Query: 177 LMNFELE-AKWINDFKTMLDKDEKVIRHLVIKRDKAITE 214
           L+ F+ E  +  N+    L  DE VIR L I+  ++  +
Sbjct: 68  LVQFKTENPQLPNELDFQLKIDEDVIRWLNIQIKESEVK 106

>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis} Length = 99

 Score = 98.4 bits (246), Expect = 4e-26
 Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 118 RHYEVVYLIHEKYEED-VGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
           R YE++Y+I    EE+   ++ E+    L      +    +WG RRLAY+I   ++  Y+
Sbjct: 5   RKYEIMYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLREGFYM 64

Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
           ++N    A+ IN+F  +   +E ++RH+V+K ++
Sbjct: 65  ILNVNANAEAINEFDRLAKINEDILRHIVVKEEE 98

>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1 Length = 140

 Score = 93.2 bits (232), Expect = 1e-23
 Identities = 22/99 (22%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 118 RHYEVVYLIH-EKYEEDVGSVNEKVQDFLREK-KGRVWRLNDWGLRRLAYKIQKAKKAHY 175
           R YE +++I     EE+  ++ E+V+  + E+ KG++ ++   G+R+ AY+I+K  +  Y
Sbjct: 19  RIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDY 78

Query: 176 ILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITE 214
            ++ F  + + + + +       ++IR    +R     +
Sbjct: 79  TVIYFRCDGQNLQELENFYRVTPEIIRWQTFRRFDLEKK 117

>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 168

 Score = 88.8 bits (220), Expect = 9e-22
 Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 118 RHYEVVYLIH-EKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKA--- 173
           R YE + ++  +  E++  ++ +K ++ L         + + G+  LAY I++  KA   
Sbjct: 63  RQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGET 122

Query: 174 ------HYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
                  Y+L  +  + + I+  +  L  D+ VIR    K  K
Sbjct: 123 NNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIRK 165

>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus} Length = 96

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 90  PEFADDEEEKLYESLNIELESELNVERRRHYEVVYLIHEKYEED-VGSVNEKVQDFLREK 148
            +  +D   +L    N+     +       YEV  +++   ++  +    E +Q  L   
Sbjct: 16  EDRVNDLARELRIRDNVRRVMVVASTTPGRYEVNIVLNPNLDQSQLALEKEIIQRALENY 75

Query: 149 KGRVWRLNDWGLRRLAYKIQK 169
             RV ++ + GLRRLAY I K
Sbjct: 76  GARVEKVEELGLRRLAYPIAK 96

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 8e-05
 Identities = 33/236 (13%), Positives = 76/236 (32%), Gaps = 56/236 (23%)

Query: 51  DNNKEDSHSFFSKADEDNLFFPEAVLLKEKKVQEDGRALP-EFADDEEEKLYESLNIELE 109
              +E    F  +    N  F    L+   K ++   ++      ++ ++LY   + ++ 
Sbjct: 73  SKQEEMVQKFVEEVLRINYKF----LMSPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVF 126

Query: 110 SELNVERRRHYEVV--YLIHEKYEEDV------GS-----VNEKVQDFLREKK--GRV-W 153
           ++ NV R + Y  +   L+  +  ++V      GS       +    +  + K   ++ W
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 154 ----RLNDWG-----LRRLAYKI-----QKAKKAHYILMNFELEAKWINDFKT------- 192
                 N        L++L Y+I      ++  +  I +        +            
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 193 --MLD--KDEKVIRH-------LVIKRDKAITEDCPPPPEFH-TLRAEMHGYDEEE 236
             +L   ++ K           L+  R K +T+        H +L         +E
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
1cqm_A	101	Ribosomal protein S6; alzheimer disease, oligomeri	99.97
3i1m_F	135	30S ribosomal protein S6; ribosome structure, prot	99.97
3r8n_F	100	30S ribosomal protein S6; protein biosynthesis, RN	99.97
2j5a_A	110	30S ribosomal protein S6; ribonucleoprotein, RIBO	99.97
3r3t_A	99	30S ribosomal protein S6; structural genomics, cen	99.96
1vmb_A	140	30S ribosomal protein S6; TM0603, structural genom	99.96
3bbn_F	168	Ribosomal protein S6; small ribosomal subunit, spi	99.95
2kjw_A	96	TS9, 30S ribosomal protein S6; S6 permutant, solut	99.62
3zzp_A	77	TS9, ribosomal protein S6; protein folding, RNA-bi	99.0
2kjw_A	96	TS9, 30S ribosomal protein S6; S6 permutant, solut	98.71
3zzp_A	77	TS9, ribosomal protein S6; protein folding, RNA-bi	97.9

>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...

Probab=99.97  E-value=6e-32  Score=217.05  Aligned_cols=99  Identities=26%  Similarity=0.414  Sum_probs=94.1

Q ss_pred             CcCcceEEEecCCC-hHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHHhC
Q 021931          117 RRHYEVVYLIHEKY-EEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLD  195 (305)
Q Consensus       117 MR~YEimlILrP~l-eEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~Lr  195 (305)
                      ||+||+|+|++|++ +++++++++++.++|.++||+|+++++||+|+|||+|+|+++|+|++|+|.++|+++++|++.|+
T Consensus         1 M~~YE~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~lr   80 (101)
T 1cqm_A            1 MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR   80 (101)
T ss_dssp             CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHHHHH
T ss_pred             CCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHHHhc
Confidence            89999999999997 56899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEEEeecCCCCCC
Q 021931          196 KDEKVIRHLVIKRDKAITED  215 (305)
Q Consensus       196 LDE~VLR~LIVK~ek~i~e~  215 (305)
                      +|++|||||++|++++.+++
T Consensus        81 ~~~~VlR~l~vk~~~~~~~~  100 (101)
T 1cqm_A           81 IRDNVRRVMVVKSQEPFLAN  100 (101)
T ss_dssp             TSTTEEEEEEEECSSCCC--
T ss_pred             CCcceEEEEEEEecccccCC
Confidence            99999999999999877654

>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ...

Probab=99.97  E-value=9.3e-33  Score=233.86  Aligned_cols=107  Identities=36%  Similarity=0.661  Sum_probs=98.8

Q ss_pred             CcCcceEEEecCCChHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHHhCC
Q 021931          117 RRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDK  196 (305)
Q Consensus       117 MR~YEimlILrP~leEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~LrL  196 (305)
                      ||+||+|||++|+++++++++++++.++|.++||+|+++++||+|+|||+|+|+++|||++|+|.++|++|++|++.|++
T Consensus         1 Mr~YE~~~Il~P~~~e~v~~~ve~~~~~I~~~GG~I~~ve~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~i~ELer~lri   80 (135)
T 3i1m_F            1 MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRF   80 (135)
T ss_dssp             CCEECBEEEECSTTTTSHHHHHHHHHHHHHHTTCEECCCEEEEEECCSSCTTSSSCEEEEECCEECCTTHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCchHHHHHHHHHHHHHHHHCCCEEEEEEeeccccCceEcCCCCeEEEEEEEEEeCHHHHHHHHHHhcC
Confidence            89999999999998888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEEeecCCCCCCCCCCCCcc
Q 021931          197 DEKVIRHLVIKRDKAITEDCPPPPEFH  223 (305)
Q Consensus       197 DE~VLR~LIVK~ek~i~e~~p~~~ef~  223 (305)
                      |++||||||||+++..+++||+.+...
T Consensus        81 ~e~VLR~livk~d~~~~~~s~~~~~~~  107 (135)
T 3i1m_F           81 NDAVIRSMVMRTKHAVTEASPMVKAKD  107 (135)
T ss_dssp             CSSEESCCBCCCSSCCCSCC-------
T ss_pred             CCCeEEEEEEEeccCccCCChhhhhhh
Confidence            999999999999999999999986654

>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1

Probab=99.97  E-value=1e-30  Score=213.21  Aligned_cols=99  Identities=33%  Similarity=0.591  Sum_probs=94.2

Q ss_pred             cCcCcceEEEecCCCh-HhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEe-CcchHHHHHHH
Q 021931          116 RRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFEL-EAKWINDFKTM  193 (305)
Q Consensus       116 ~MR~YEimlILrP~le-EEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea-~psaIkELer~  193 (305)
                      .|++||+|||++|+++ ++++++++++.++|.++||+|+++++||+|+|||+|+|+++|+|++|+|.+ +|++|++|++.
T Consensus         6 ~M~~YE~~~Il~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~eler~   85 (110)
T 2j5a_A            6 TLRYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELDFQ   85 (110)
T ss_dssp             SCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHHHH
T ss_pred             CCCcceEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHHHHH
Confidence            5999999999999975 589999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             hCCCCCeeEEEEEeecCCCCC
Q 021931          194 LDKDEKVIRHLVIKRDKAITE  214 (305)
Q Consensus       194 LrLDE~VLR~LIVK~ek~i~e  214 (305)
                      |++|++|||||++|+++....
T Consensus        86 lr~~e~VlR~livk~~~~~~~  106 (110)
T 2j5a_A           86 LKIDEDVIRWLNIQIKESEVK  106 (110)
T ss_dssp             HHHCTTEEEEEEEEECGGGCC
T ss_pred             hCCCcCeEEEEEEEccccccc
Confidence            999999999999999866543

>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}

Probab=99.96  E-value=1.4e-31  Score=214.53  Aligned_cols=96  Identities=29%  Similarity=0.635  Sum_probs=91.6

Q ss_pred             ccCcCcceEEEecCCCh-HhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHH
Q 021931          115 ERRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTM  193 (305)
Q Consensus       115 ~~MR~YEimlILrP~le-EEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~  193 (305)
                      ++||+||+|+|++|+++ ++++++++++.++|.++||+|+++++||+|+|||+|+|+++|+|++|+|.|+|+++++|++.
T Consensus         2 ~~M~~YE~~~Il~p~~~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~   81 (99)
T 3r3t_A            2 NAMRKYEIMYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLREGFYMILNVNANAEAINEFDRL   81 (99)
T ss_dssp             -CCCCCCCCCCCCTTSCHHHHHHHHHHHHHHHHTTTCCCCCCCCCCSCCCCCCCCCCCCSCCCCCCCCCCHHHHHHHHHH
T ss_pred             CCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEeeccccCcCcCCCCEEEEEEEEEEeCHHHHHHHHHH
Confidence            47999999999999985 67999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCeeEEEEEeecC
Q 021931          194 LDKDEKVIRHLVIKRDK  210 (305)
Q Consensus       194 LrLDE~VLR~LIVK~ek  210 (305)
                      |++|++|||||++|+++
T Consensus        82 lr~~~~VlR~livk~~~   98 (99)
T 3r3t_A           82 AKINEDILRHIVVKEEE   98 (99)
T ss_dssp             HHHCTTCCCCCCCCCC-
T ss_pred             hcCCCCeEEEEEEEecC
Confidence            99999999999999875

>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1

Probab=99.96  E-value=1.7e-30  Score=221.24  Aligned_cols=109  Identities=19%  Similarity=0.444  Sum_probs=98.2

Q ss_pred             hccccCcCcceEEEecCCCh-HhHHHHHHHHHHHHHhC-CCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHH
Q 021931          112 LNVERRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREK-KGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWIND  189 (305)
Q Consensus       112 ~~~~~MR~YEimlILrP~le-EEVkalvekv~~iL~e~-GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkE  189 (305)
                      +-...||+||+|||++|+++ ++++++++++.++|.++ ||+|+++++||+|+|||+|+|+++|+|++|+|.++|++|++
T Consensus        13 ~~~~~Mr~YE~~~Il~P~l~ee~v~~~ve~~~~~I~~~~GG~I~~ve~wG~R~LAY~I~K~~~G~Yvl~~f~a~~~~i~E   92 (140)
T 1vmb_A           13 MAYVKERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDYTVIYFRCDGQNLQE   92 (140)
T ss_dssp             ----CCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSTHH
T ss_pred             ccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccccccCCCCEEEEEEEEEEECHHHHHH
Confidence            34567999999999999975 58999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCeeEEEEEeecCCCCCCCCCCC
Q 021931          190 FKTMLDKDEKVIRHLVIKRDKAITEDCPPPP  220 (305)
Q Consensus       190 Ler~LrLDE~VLR~LIVK~ek~i~e~~p~~~  220 (305)
                      |++.|++|++||||||||+++...++++++.
T Consensus        93 Ler~lri~e~VLR~livK~~~~~~~~s~~~~  123 (140)
T 1vmb_A           93 LENFYRVTPEIIRWQTFRRFDLEKKERKAQR  123 (140)
T ss_dssp             HHHHHHTCTTEEEEEEEECHHHHHHHHHHHC
T ss_pred             HHHHhcCCcceeEEEEEEecccccchhhhhc
Confidence            9999999999999999999987665555443

>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.95  E-value=4.7e-28  Score=212.27  Aligned_cols=96  Identities=21%  Similarity=0.342  Sum_probs=91.2

Q ss_pred             cCcCcceEEEecCCCh-HhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCC---------eEEEEEEEEEeCcc
Q 021931          116 RRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAK---------KAHYILMNFELEAK  185 (305)
Q Consensus       116 ~MR~YEimlILrP~le-EEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~k---------eG~Yvlm~Fea~ps  185 (305)
                      .||+||+|+|++|+++ ++++++++++.++|.++||+|+++++||+|+|||+|+|++         +|+|++|+|.++|+
T Consensus        61 ~Mr~YE~m~IlrPdl~eeev~alver~~~iI~~~GG~I~~ve~WG~RrLAY~IkK~~kgg~~~~h~eG~Yvlm~F~a~p~  140 (168)
T 3bbn_F           61 GLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPE  140 (168)
T ss_dssp             -CEEEEEEEEECTTSCHHHHHSTTHHHHHHHTTTSCEEEEEEEEEECCCSSCTTSCSSSCSSCCCCCCEEEEEEEEECTT
T ss_pred             CCCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEecccccccceeccCcccccccccceEEEEEEEEEeCHH
Confidence            4999999999999974 5899999999999999999999999999999999999998         79999999999999


Q ss_pred             hHHHHHHHhCCCCCeeEEEEEeecCC
Q 021931          186 WINDFKTMLDKDEKVIRHLVIKRDKA  211 (305)
Q Consensus       186 aIkELer~LrLDE~VLR~LIVK~ek~  211 (305)
                      +|++|++.|++|++||||||||+++.
T Consensus       141 ~I~ELeR~Lride~VLR~liVK~d~~  166 (168)
T 3bbn_F          141 SISPLEAALVTDDDVIRSSSFKIRKR  166 (168)
T ss_dssp             SSHHHHHHHHTSSCCSEEECCBCCSC
T ss_pred             HHHHHHHHhcCCcCeeEEEEEecccc
Confidence            99999999999999999999998853

>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}

Probab=99.62  E-value=1.2e-16  Score=128.68  Aligned_cols=58  Identities=29%  Similarity=0.455  Sum_probs=54.1

Q ss_pred             hccccCcCcceEEEecCCCh-HhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCC
Q 021931          112 LNVERRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQK  169 (305)
Q Consensus       112 ~~~~~MR~YEimlILrP~le-EEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK  169 (305)
                      +.+++|++||+|||++|+++ ++++++++++.++|+++||+|.++++||+|+|||+|+|
T Consensus        38 v~~e~Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~gG~i~~ve~WG~R~LAY~I~K   96 (96)
T 2kjw_A           38 VASTTPGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAK   96 (96)
T ss_dssp             EECSSSSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCCSCCEECCCCCCCCSCCC
T ss_pred             eehhhhhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccccccccccCCC
Confidence            35677999999999999985 57999999999999999999999999999999999997

>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}

Probab=99.00  E-value=2.1e-10  Score=88.77  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=38.7

Q ss_pred             CCeEEEEEEEEEeCcchHHHHHHHhCCCCCeeEEEEEeecCC
Q 021931          170 AKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKA  211 (305)
Q Consensus       170 ~keG~Yvlm~Fea~psaIkELer~LrLDE~VLR~LIVK~ek~  211 (305)
                      +++|||++|+|.|+|++|++|++.|+++++|||||++|.+++
T Consensus         2 k~~G~Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~   43 (77)
T 3zzp_A            2 DPQGYTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTP   43 (77)
T ss_dssp             --CTTEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSST
T ss_pred             CceEEEEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCC
Confidence            478999999999999999999999999999999999999875

>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}

Probab=98.71  E-value=2.7e-09  Score=85.81  Aligned_cols=40  Identities=18%  Similarity=0.332  Sum_probs=38.9

Q ss_pred             CCeEEEEEEEEEeCcchHHHHHHHhCCCCCeeEEEEEeec
Q 021931          170 AKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRD  209 (305)
Q Consensus       170 ~keG~Yvlm~Fea~psaIkELer~LrLDE~VLR~LIVK~e  209 (305)
                      +++|||++|+|.++|+++++|+|.|+++++|||||+++++
T Consensus         2 ~~~g~Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e   41 (96)
T 2kjw_A            2 DPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVAST   41 (96)
T ss_dssp             TTSCCCEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECS
T ss_pred             CceEEEEEEEeecChhHHHHHHHHhccchhhhhhhheehh
Confidence            5789999999999999999999999999999999999998

>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}

Probab=97.90  E-value=7.1e-06  Score=63.31  Aligned_cols=38  Identities=16%  Similarity=0.250  Sum_probs=34.4

Q ss_pred             ccccCcCcceEEEecCCChH-hHHHHHHHHHHHHHhCCC
Q 021931          113 NVERRRHYEVVYLIHEKYEE-DVGSVNEKVQDFLREKKG  150 (305)
Q Consensus       113 ~~~~MR~YEimlILrP~leE-EVkalvekv~~iL~e~GG  150 (305)
                      ..+.+|+||+|||++|++++ ++++++++++++|+++||
T Consensus        39 r~d~~r~YE~m~Il~P~l~ee~~~~~vek~~~~i~~~Gg   77 (77)
T 3zzp_A           39 ASTTPGRYEVNIVLNPNLDQSQLQNEKEIIQRALENYGA   77 (77)
T ss_dssp             ECSSTTEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hccCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            56669999999999999865 799999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d2qalf1	100	d.58.14.1 (F:1-100) Ribosomal protein S6 {Escheric	1e-26
d1vmba_	107	d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga ma	3e-22
d1loua_	97	d.58.14.1 (A:) Ribosomal protein S6 {Thermus therm	7e-22
d2j5aa1	106	d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex	1e-18

>d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia coli [TaxId: 562]} Length = 100

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S6
family: Ribosomal protein S6
domain: Ribosomal protein S6
species: Escherichia coli [TaxId: 562]

 Score = 98.7 bits (246), Expect = 1e-26
 Identities = 38/98 (38%), Positives = 60/98 (61%)

Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
           RHYE+V+++H    E V  + E+    +   +G++ RL DWG R+LAY I K  KAHY+L
Sbjct: 2   RHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVL 61

Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITED 215
           MN E   + I++ +T    ++ VIR +V++   A+TE 
Sbjct: 62  MNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEA 99

>d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima [TaxId: 2336]} Length = 107

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S6
family: Ribosomal protein S6
domain: Ribosomal protein S6
species: Thermotoga maritima [TaxId: 2336]

 Score = 87.1 bits (216), Expect = 3e-22
 Identities = 22/98 (22%), Positives = 52/98 (53%), Gaps = 2/98 (2%)

Query: 116 RRRHYEVVYLIH-EKYEEDVGSVNEKVQDFLREK-KGRVWRLNDWGLRRLAYKIQKAKKA 173
           + R YE +++I     EE+  ++ E+V+  + E+ KG++ ++   G+R+ AY+I+K  + 
Sbjct: 1   KERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEG 60

Query: 174 HYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKA 211
            Y ++ F  + + + + +       ++IR    +R   
Sbjct: 61  DYTVIYFRCDGQNLQELENFYRVTPEIIRWQTFRRFDL 98

>d1loua_ d.58.14.1 (A:) Ribosomal protein S6 {Thermus thermophilus [TaxId: 274]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S6
family: Ribosomal protein S6
domain: Ribosomal protein S6
species: Thermus thermophilus [TaxId: 274]

 Score = 86.0 bits (213), Expect = 7e-22
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 118 RHYEVVYLIH-EKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
           R YEV  +++    +  +    E +Q        RV ++ + GLRRLAY I K  + +++
Sbjct: 2   RRYEVNIVLNPNLDQSQLALEKEIIQRAAENYGARVEKVEELGLRRLAYPIAKDPQGYFL 61

Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
               E+    +ND    L   + V R +V+K  +
Sbjct: 62  WYQVEMPEDRVNDLARELRIRDNVRRVMVVKSQE 95

>d2j5aa1 d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex aeolicus [TaxId: 63363]} Length = 106

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S6
family: Ribosomal protein S6
domain: Ribosomal protein S6
species: Aquifex aeolicus [TaxId: 63363]

 Score = 77.1 bits (190), Expect = 1e-18
 Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 2/99 (2%)

Query: 118 RHYEVVYLIH-EKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
           R+YE V+ +     EE++    E+V++F+++K G +    DWG+R+LAY IQK   A Y 
Sbjct: 6   RYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYF 65

Query: 177 LMNFELE-AKWINDFKTMLDKDEKVIRHLVIKRDKAITE 214
           L+ F+ E  +  N+    L  DE VIR L I+  ++  +
Sbjct: 66  LVQFKTENPQLPNELDFQLKIDEDVIRWLNIQIKESEVK 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d1loua_	97	Ribosomal protein S6 {Thermus thermophilus [TaxId:	99.96
d2qalf1	100	Ribosomal protein S6 {Escherichia coli [TaxId: 562	99.96
d2j5aa1	106	Ribosomal protein S6 {Aquifex aeolicus [TaxId: 633	99.96
d1vmba_	107	Ribosomal protein S6 {Thermotoga maritima [TaxId:	99.95

>d1loua_ d.58.14.1 (A:) Ribosomal protein S6 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S6
family: Ribosomal protein S6
domain: Ribosomal protein S6
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=2.8e-30  Score=203.08  Aligned_cols=95  Identities=26%  Similarity=0.437  Sum_probs=92.1

Q ss_pred             CcCcceEEEecCCCh-HhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHHhC
Q 021931          117 RRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLD  195 (305)
Q Consensus       117 MR~YEimlILrP~le-EEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~Lr  195 (305)
                      |++||+|+|++|+++ ++++++++++.++|+++||+|.++++||+|+|||+|+|+++|+|++|+|+++|++|++|++.|+
T Consensus         1 M~~YE~~~i~~p~l~~~~~~~~~~~~~~~i~~~gg~i~~~e~~G~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~l~   80 (97)
T d1loua_           1 MRRYEVNIVLNPNLDQSQLALEKEIIQRAAENYGARVEKVEELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR   80 (97)
T ss_dssp             CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECGGGHHHHHHHHH
T ss_pred             CCcceEEEEECCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeeeEEEeccccccccceeEEEEEEEEeCHHHHHHHHHHhc
Confidence            899999999999975 4799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEEEeecCC
Q 021931          196 KDEKVIRHLVIKRDKA  211 (305)
Q Consensus       196 LDE~VLR~LIVK~ek~  211 (305)
                      ++++|||||+||++++
T Consensus        81 l~~~VlR~l~vk~~e~   96 (97)
T d1loua_          81 IRDNVRRVMVVKSQEP   96 (97)
T ss_dssp             TSTTEEEEEEEECSSC
T ss_pred             CCcCeEEEEEEEecCC
Confidence            9999999999999875

>d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S6
family: Ribosomal protein S6
domain: Ribosomal protein S6
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.8e-31  Score=208.31  Aligned_cols=100  Identities=38%  Similarity=0.707  Sum_probs=96.8

Q ss_pred             CcCcceEEEecCCChHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHHhCC
Q 021931          117 RRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDK  196 (305)
Q Consensus       117 MR~YEimlILrP~leEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~LrL  196 (305)
                      ||+||+|+|++|+++++++++++++.++|.++||+|.++++||+|+|||+|+|+++|+|++++|.++|++|++|++.|++
T Consensus         1 M~~YE~~~Il~p~~~e~~~~~~~~~~~~i~~~gg~v~~~~~~G~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~l~~   80 (100)
T d2qalf1           1 MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRF   80 (100)
T ss_dssp             CCEECEEEEECGGGTTHHHHHHHHHHHHHHHTTCCCCCCCCCBSCBCSSCTTSCSBCBBCCCCEECCHHHHHHHHHHTTS
T ss_pred             CCcceEEEEECCCcHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeeecccccccCCeeEEEEEEEecCHHHHHHHHHHhcC
Confidence            99999999999998778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEEeecCCCCCCC
Q 021931          197 DEKVIRHLVIKRDKAITEDC  216 (305)
Q Consensus       197 DE~VLR~LIVK~ek~i~e~~  216 (305)
                      +++|||||+||+++..++++
T Consensus        81 ~~~VlR~l~vk~~~~~~e~S  100 (100)
T d2qalf1          81 NDAVIRSMVMRTKHAVTEAS  100 (100)
T ss_dssp             CTTEEEEEECCCSSCCCSCC
T ss_pred             ccCeeEEEEEEeccCcCCCC
Confidence            99999999999999887764

>d2j5aa1 d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S6
family: Ribosomal protein S6
domain: Ribosomal protein S6
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.96  E-value=1.3e-29  Score=202.61  Aligned_cols=101  Identities=34%  Similarity=0.588  Sum_probs=94.8

Q ss_pred             cccCcCcceEEEecCCCh-HhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeC-cchHHHHH
Q 021931          114 VERRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELE-AKWINDFK  191 (305)
Q Consensus       114 ~~~MR~YEimlILrP~le-EEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~-psaIkELe  191 (305)
                      .+.||+||+|+|++|+++ ++++++++++.++|.+.||+|+.+++||+|+|||+|+|+++|+|++|+|.++ |+++++|+
T Consensus         2 ~k~Mr~YE~~~Il~p~l~~~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~Ikk~~~G~Y~~~~f~~~~~~~i~el~   81 (106)
T d2j5aa1           2 YKTLRYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELD   81 (106)
T ss_dssp             CCSCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHH
T ss_pred             cCccccccEEEEECCCCCHHHHHHHHHHHHHHHHHCCCeEEEEecceeechhhhhhhccceEEEEEEEEECcHHHHHHHH
Confidence            468999999999999985 4799999999999999999999999999999999999999999999999996 67899999


Q ss_pred             HHhCCCCCeeEEEEEeecCCCCC
Q 021931          192 TMLDKDEKVIRHLVIKRDKAITE  214 (305)
Q Consensus       192 r~LrLDE~VLR~LIVK~ek~i~e  214 (305)
                      +.|+++++|||||+||+++...+
T Consensus        82 ~~l~l~~~VlR~l~vkl~~~~~~  104 (106)
T d2j5aa1          82 FQLKIDEDVIRWLNIQIKESEVK  104 (106)
T ss_dssp             HHHHHCTTEEEEEEEEECGGGCC
T ss_pred             HHhCCCcCeeEEEEEEecchhcc
Confidence            99999999999999999876654

>d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S6
family: Ribosomal protein S6
domain: Ribosomal protein S6
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=1.3e-28  Score=197.21  Aligned_cols=94  Identities=22%  Similarity=0.519  Sum_probs=90.0

Q ss_pred             CcCcceEEEecCCCh-HhHHHHHHHHHHHHHhC-CCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHHh
Q 021931          117 RRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREK-KGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTML  194 (305)
Q Consensus       117 MR~YEimlILrP~le-EEVkalvekv~~iL~e~-GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~L  194 (305)
                      ||.||+|+|++|+++ ++++++++++.++|+++ ||+|+.+++||+|+|||+|+|+++|||++|+|.++|+++++|++.|
T Consensus         2 ~R~YE~~~Il~p~l~~~~~~~~~~~~~~~i~~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~l   81 (107)
T d1vmba_           2 ERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDYTVIYFRCDGQNLQELENFY   81 (107)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSTHHHHHHH
T ss_pred             CceeEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeeeeccceEcCCCcEEEEEEEEEEECHHHHHHHHHHh
Confidence            899999999999985 57999999999999876 9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEEEEeecC
Q 021931          195 DKDEKVIRHLVIKRDK  210 (305)
Q Consensus       195 rLDE~VLR~LIVK~ek  210 (305)
                      +++++|||||+||+++
T Consensus        82 ~l~~~VlR~livk~~~   97 (107)
T d1vmba_          82 RVTPEIIRWQTFRRFD   97 (107)
T ss_dssp             HTCTTEEEEEEEECHH
T ss_pred             cCCcCeEEEEEEEccc
Confidence            9999999999999764