Citrus Sinensis ID: 021955

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
MESESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIIIERQRASSTTPQRNIKASMETIKDTIGVSPSDADVTSADKEATSTTQGTAYPALPEEPNVDGKL
cccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHcccEEEEEEccccccccccccccccccHHHHHHHHccEEEEEEEcccHHHHHHHHHHcccccccEEEEccccccEEEEEccccccHHHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
cccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHccccHHHHccccHHHHHHHHHHcccEEEEEEcccccccHHHHcHHHcccHHHHHHHHHcEEEEEEEcccHcHHHEEEEEccccccEEEEEccccccEEEEEcccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
MESESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAvneadatappsysalaenansrpdqnlvtggqdggyevcvpphakdlfyndasttdtsHDILAslyrppfhvmfngsfekAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWqeyddtsegwkvcsfynmdsipavlvidpitgqkicswcgminpqplgemllpfmdrsprKCATIIIErqrassttpqrniKASMETIKDtigvspsdadvtsadkeatsttqgtaypalpeepnvdgkl
mesesidkesrISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIIierqrassttpqrnikASMETIkdtigvspsdadvtsadkeatsttqgtaypalpeepnvdgkl
MESESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIIIERQRASSTTPQRNIKASMETIKDTIGVSPSDADVTSADKEATSTTQGTAYPALPEEPNVDGKL
*************SFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEA***************************QDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIII***************************************************************
**********RISSFLEIAVGASGVTAIECLQATSWKLDEAILL********************************************************************YRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD**************************************************************************
***********ISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIIIERQ*********NIKASMETIKDTIGVSP*****************GTAYPALPE********
******DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE*******************************************************HDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS************************************************************************
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MESESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIIIERQRASSTTPQRNIKASMETIKDTIGVSPSDADVTSADKEATSTTQGTAYPALPEEPNVDGKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query305 2.2.26 [Sep-21-2011]
Q5REY7 489 UBX domain-containing pro yes no 0.462 0.288 0.393 6e-28
O94888 489 UBX domain-containing pro yes no 0.462 0.288 0.393 6e-28
Q6P5G6 467 UBX domain-containing pro yes no 0.383 0.250 0.444 6e-28
O14048427 UBX domain-containing pro yes no 0.363 0.259 0.378 6e-21
Q55BU7 503 UBX domain-containing pro yes no 0.4 0.242 0.344 7e-19
Q06682500 UBX domain-containing pro yes no 0.357 0.218 0.357 1e-17
>sp|Q5REY7|UBXN7_PONAB UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2 SV=2 Back     alignment and function desciption
 Score =  124 bits (312), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 4/145 (2%)

Query: 69  RPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKA 128
           RP +++  G +D   E       ++    +    D     LA L+RPP  +M  GSFE A
Sbjct: 102 RPARSIFDGFRDFQTETI----RQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETA 157

Query: 129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC 188
           K+    Q+KWL++N+Q+ ++F+   LNRD W NEAV  II  +FIFWQ Y D+ EG +  
Sbjct: 158 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYI 217

Query: 189 SFYNMDSIPAVLVIDPITGQKICSW 213
            FY +   P V ++DP TGQK+  W
Sbjct: 218 QFYKLGDFPYVSILDPRTGQKLVEW 242

Pongo abelii (taxid: 9601)
>sp|O94888|UBXN7_HUMAN UBX domain-containing protein 7 OS=Homo sapiens GN=UBXN7 PE=1 SV=2 Back     alignment and function description
>sp|Q6P5G6|UBXN7_MOUSE UBX domain-containing protein 7 OS=Mus musculus GN=Ubxn7 PE=1 SV=2 Back     alignment and function description
>sp|O14048|UBX2_SCHPO UBX domain-containing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubx2 PE=1 SV=1 Back     alignment and function description
>sp|Q55BU7|UBXN7_DICDI UBX domain-containing protein 7 homolog OS=Dictyostelium discoideum GN=ubxd7 PE=4 SV=1 Back     alignment and function description
>sp|Q06682|UBX5_YEAST UBX domain-containing protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBX5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
224111366 444 predicted protein [Populus trichocarpa] 0.973 0.668 0.488 4e-80
359473684 456 PREDICTED: UBX domain-containing protein 0.901 0.603 0.487 4e-74
359473686 447 PREDICTED: UBX domain-containing protein 0.901 0.615 0.494 1e-73
224099647309 predicted protein [Populus trichocarpa] 0.816 0.805 0.515 3e-72
449445306 450 PREDICTED: UBX domain-containing protein 0.977 0.662 0.459 3e-72
255561727 452 UBX domain-containing protein, putative 0.970 0.654 0.450 9e-72
357517375 461 UBX domain-containing protein [Medicago 0.960 0.635 0.431 6e-69
356559124 456 PREDICTED: UBX domain-containing protein 0.977 0.653 0.435 3e-68
356559126 443 PREDICTED: UBX domain-containing protein 0.977 0.672 0.459 4e-68
356559122 467 PREDICTED: UBX domain-containing protein 0.977 0.638 0.430 1e-67
>gi|224111366|ref|XP_002315828.1| predicted protein [Populus trichocarpa] gi|222864868|gb|EEF01999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  303 bits (777), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 176/360 (48%), Positives = 212/360 (58%), Gaps = 63/360 (17%)

Query: 7   DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENA 66
           D++S +SSFLEIAVG +  TA + LQATSWKL++AI LF+  NE  A A  S+    E  
Sbjct: 9   DEQSMVSSFLEIAVGQTAETARQFLQATSWKLEDAIQLFYVGNEGGAVASASHPPPTETW 68

Query: 67  NSRPDQNLVTGGQDGGYEVCVP-PHAKDLFYNDA-------------------------- 99
               +   V  G   G EV  P P  +D  Y+DA                          
Sbjct: 69  PEDLENEKV--GHSDGEEVRAPLPVVRDTLYDDAMLYGASRTGYPPHEASSLIAFRNFDE 126

Query: 100 ---------------STTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQ 144
                          STTD S D LASLYRPPFH+MF+GSFEKAK AA  QDKWLLVNLQ
Sbjct: 127 EMKHPGVWESDQGSTSTTDNSRDNLASLYRPPFHLMFHGSFEKAKGAASVQDKWLLVNLQ 186

Query: 145 STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP 204
           STKEFSS MLNRDTW NEAV+Q IS NFIFWQ YDDTSEG KVC++Y +DSIP VL+IDP
Sbjct: 187 STKEFSSHMLNRDTWANEAVAQTISTNFIFWQVYDDTSEGQKVCTYYKLDSIPVVLIIDP 246

Query: 205 ITGQKICSWCGMINPQPLGEMLLPFMDRSPR-KCATIIIERQRASSTTPQ---------- 253
           ITGQK+ SW GM+ P+ L E L+PFMD  PR    T+  +RQR SS TP           
Sbjct: 247 ITGQKMHSWVGMVQPESLLEDLVPFMDGGPRDHHKTLSHKRQRGSSLTPPKSKEEDEEVL 306

Query: 254 RNIKASMETIKDTIGVSPSDADVTSADKEATSTTQGT--------AYPALPEEPNVDGKL 305
           R + ASME++KD+  ++ +  D+ S DK+  ST +G          YP LPEEP+ D  L
Sbjct: 307 RALAASMESMKDSSVIASNKKDIASNDKDDASTAKGEEKCSTKTLTYPPLPEEPSGDKSL 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359473684|ref|XP_003631347.1| PREDICTED: UBX domain-containing protein 2-like isoform 2 [Vitis vinifera] gi|297738308|emb|CBI27509.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473686|ref|XP_002274120.2| PREDICTED: UBX domain-containing protein 2-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224099647|ref|XP_002311564.1| predicted protein [Populus trichocarpa] gi|222851384|gb|EEE88931.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449445306|ref|XP_004140414.1| PREDICTED: UBX domain-containing protein 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255561727|ref|XP_002521873.1| UBX domain-containing protein, putative [Ricinus communis] gi|223538911|gb|EEF40509.1| UBX domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357517375|ref|XP_003628976.1| UBX domain-containing protein [Medicago truncatula] gi|358345084|ref|XP_003636613.1| UBX domain-containing protein [Medicago truncatula] gi|355502548|gb|AES83751.1| UBX domain-containing protein [Medicago truncatula] gi|355522998|gb|AET03452.1| UBX domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356559124|ref|XP_003547851.1| PREDICTED: UBX domain-containing protein 7-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356559126|ref|XP_003547852.1| PREDICTED: UBX domain-containing protein 7-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|356559122|ref|XP_003547850.1| PREDICTED: UBX domain-containing protein 7-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
TAIR|locus:2204497468 AT1G14570 "AT1G14570" [Arabido 0.645 0.420 0.509 2.3e-60
MGI|MGI:2146388 467 Ubxn7 "UBX domain protein 7" [ 0.649 0.423 0.350 3.2e-27
ZFIN|ZDB-GENE-040704-8 505 ubxn7 "UBX domain protein 7" [ 0.462 0.279 0.386 2.1e-26
UNIPROTKB|I3LQY9 476 UBXN7 "Uncharacterized protein 0.462 0.296 0.393 5.4e-26
UNIPROTKB|E2R9U7 489 UBXN7 "Uncharacterized protein 0.462 0.288 0.393 6.4e-26
UNIPROTKB|O94888 489 UBXN7 "UBX domain-containing p 0.462 0.288 0.393 6.4e-26
UNIPROTKB|E1BTX4 492 UBXN7 "Uncharacterized protein 0.462 0.286 0.393 6.6e-26
UNIPROTKB|F1MUA8 474 UBXN7 "Uncharacterized protein 0.462 0.297 0.386 1.5e-25
DICTYBASE|DDB_G0270358 503 DDB_G0270358 "ubiquitin intera 0.452 0.274 0.323 8.4e-22
CGD|CAL0001806 546 orf19.4430 [Candida albicans ( 0.344 0.192 0.390 8.5e-20
TAIR|locus:2204497 AT1G14570 "AT1G14570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 503 (182.1 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 105/206 (50%), Positives = 138/206 (66%)

Query:    99 ASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDT 158
             + +     D LASLYRPPFH+MF GSFE+AK  + +QDKWLLVNLQST EFSS MLNRDT
Sbjct:   161 SESASAPRDSLASLYRPPFHLMFQGSFEQAKTTSSSQDKWLLVNLQSTTEFSSHMLNRDT 220

Query:   159 WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMIN 218
             W N+AVSQ I  NFIFWQ YDDT+EG KVC++Y ++SIP VLVIDP TGQ++  W GM++
Sbjct:   221 WANDAVSQTIKANFIFWQVYDDTTEGRKVCTYYKLESIPVVLVIDPTTGQRMRMWTGMVD 280

Query:   219 PQPLGEMLLPFMDRSPRK-CATIIIERQRAS-STTPQRNIKASM------ETIKDTIGVS 270
             P+ L E L+PFMD  PR+  A++  +R R S S TP    K  +      E ++  +  S
Sbjct:   281 PENLLEDLVPFMDGGPREHFASLSKKRPRGSFSLTPHSKPKEDVAKDEEEEELQRALAAS 340

Query:   271 PSDADVT-SADKEATSTTQGTAYPAL 295
               D ++  S+D ++T   +  A  A+
Sbjct:   341 LEDNNMKESSDDQSTIIPEEVAVEAV 366
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0048573 "photoperiodism, flowering" evidence=RCA
MGI|MGI:2146388 Ubxn7 "UBX domain protein 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040704-8 ubxn7 "UBX domain protein 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQY9 UBXN7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9U7 UBXN7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O94888 UBXN7 "UBX domain-containing protein 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTX4 UBXN7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MUA8 UBXN7 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270358 DDB_G0270358 "ubiquitin interacting motif (UIM) domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0001806 orf19.4430 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
cd02958114 cd02958, UAS, UAS family; UAS is a domain of unkno 1e-43
smart00594122 smart00594, UAS, UAS domain 2e-35
pfam1389981 pfam13899, Thioredoxin_7, Thioredoxin-like 7e-07
>gnl|CDD|239256 cd02958, UAS, UAS family; UAS is a domain of unknown function Back     alignment and domain information 
 Score =  144 bits (366), Expect = 1e-43
 Identities = 53/113 (46%), Positives = 69/113 (61%)

Query: 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYD 179
            F GSFE AK  A ++ KWLLV LQS  EF S +LNRD W NE+V + I  NFIFWQ   
Sbjct: 1   FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDI 60

Query: 180 DTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232
           D+SEG +    Y +D  P + +IDP TG+ +  W G I P+ L   L+ F++ 
Sbjct: 61  DSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), which is involved in the ubiquitin-proteosome pathway. Some members of this family are uncharacterized proteins containing only a UAS domain. Length = 114
>gnl|CDD|214737 smart00594, UAS, UAS domain Back     alignment and domain information
>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 305
KOG1364356 consensus Predicted ubiquitin regulatory protein, 100.0
smart00594122 UAS UAS domain. 99.96
cd02958114 UAS UAS family; UAS is a domain of unknown functio 99.95
cd02991116 UAS_ETEA UAS family, ETEA subfamily; composed of p 99.95
cd02990136 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1 99.9
PF1389982 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ 99.65
KOG1363460 consensus Predicted regulator of the ubiquitin pat 99.57
cd02951125 SoxW SoxW family; SoxW is a bacterial periplasmic 99.51
cd02955124 SSP411 TRX domain, SSP411 protein family; members 99.51
cd02960130 AGR Anterior Gradient (AGR) family; members of thi 99.5
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 99.38
cd02953104 DsbDgamma DsbD gamma family; DsbD gamma is the C-t 99.37
PF03190163 Thioredox_DsbH: Protein of unknown function, DUF25 99.3
PF13098112 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ 99.16
PRK00293571 dipZ thiol:disulfide interchange protein precursor 99.12
cd02959117 ERp19 Endoplasmic reticulum protein 19 (ERp19) fam 99.12
COG2143182 Thioredoxin-related protein [Posttranslational mod 99.05
cd02950142 TxlA TRX-like protein A (TxlA) family; TxlA was or 99.0
KOG2507 506 consensus Ubiquitin regulatory protein UBXD2, cont 98.9
cd02985103 TRX_CDSP32 TRX family, chloroplastic drought-induc 98.79
KOG0910150 consensus Thioredoxin-like protein [Posttranslatio 98.78
cd0295696 ybbN ybbN protein family; ybbN is a hypothetical p 98.73
cd02997104 PDI_a_PDIR PDIa family, PDIR subfamily; composed o 98.65
PF00085103 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio 98.62
cd0294997 TRX_NTR TRX domain, novel NADPH thioredoxin reduct 98.58
PRK10996139 thioredoxin 2; Provisional 98.57
cd02963111 TRX_DnaJ TRX domain, DnaJ domain containing protei 98.57
cd02993109 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat 98.56
KOG0907106 consensus Thioredoxin [Posttranslational modificat 98.55
TIGR00385173 dsbE periplasmic protein thiol:disulfide oxidoredu 98.52
COG1331 667 Highly conserved protein containing a thioredoxin 98.5
PHA02278103 thioredoxin-like protein 98.49
cd02986114 DLP Dim1 family, Dim1-like protein (DLP) subfamily 98.48
cd0298497 TRX_PICOT TRX domain, PICOT (for PKC-interacting c 98.46
cd03002109 PDI_a_MPD1_like PDI family, MPD1-like subfamily; c 98.46
cd02948102 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus 98.46
COG4232569 Thiol:disulfide interchange protein [Posttranslati 98.45
PLN00410142 U5 snRNP protein, DIM1 family; Provisional 98.44
cd03006113 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil 98.42
cd02961101 PDI_a_family Protein Disulfide Isomerase (PDIa) fa 98.41
cd03000104 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o 98.38
cd02999100 PDI_a_ERp44_like PDIa family, endoplasmic reticulu 98.38
cd0294793 TRX_family TRX family; composed of two groups: Gro 98.38
cd02996108 PDI_a_ERp44 PDIa family, endoplasmic reticulum pro 98.37
PRK09381109 trxA thioredoxin; Provisional 98.37
cd03004104 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam 98.35
PTZ0005198 thioredoxin; Provisional 98.32
cd02954114 DIM1 Dim1 family; Dim1 is also referred to as U5 s 98.32
TIGR01068101 thioredoxin thioredoxin. Several proteins, such as 98.31
TIGR01126102 pdi_dom protein disulfide-isomerase domain. This m 98.29
cd03003101 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam 98.27
cd02994101 PDI_a_TMX PDIa family, TMX subfamily; composed of 98.26
cd03011123 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso 98.24
cd02998105 PDI_a_ERp38 PDIa family, endoplasmic reticulum pro 98.24
PRK15412185 thiol:disulfide interchange protein DsbE; Provisio 98.22
TIGR02740271 TraF-like TraF-like protein. This protein is relat 98.2
cd02995104 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain 98.18
cd02987175 Phd_like_Phd Phosducin (Phd)-like family, Phd subf 98.18
cd03005102 PDI_a_ERp46 PDIa family, endoplasmic reticulum pro 98.17
cd02957113 Phd_like Phosducin (Phd)-like family; composed of 98.15
PRK03147173 thiol-disulfide oxidoreductase; Provisional 98.14
TIGR02738153 TrbB type-F conjugative transfer system pilin asse 98.12
cd03001103 PDI_a_P5 PDIa family, P5 subfamily; composed of eu 98.06
cd02989113 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior 98.04
TIGR01295122 PedC_BrcD bacteriocin transport accessory protein, 97.98
cd03065120 PDI_b_Calsequestrin_N PDIb family, Calsequestrin s 97.98
cd02975113 PfPDO_like_N Pyrococcus furiosus protein disulfide 97.98
cd03010127 TlpA_like_DsbE TlpA-like family, DsbE (also known 97.97
PTZ00443224 Thioredoxin domain-containing protein; Provisional 97.97
cd02966116 TlpA_like_family TlpA-like family; composed of Tlp 97.96
cd03009131 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family 97.94
cd02982103 PDI_b'_family Protein Disulfide Isomerase (PDIb') 97.8
cd02952119 TRP14_like Human TRX-related protein 14 (TRP14)-li 97.78
cd02962152 TMX2 TMX2 family; composed of proteins similar to 97.77
cd02992114 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas 97.77
TIGR01130 462 ER_PDI_fam protein disulfide isomerases, eukaryoti 97.76
TIGR00424463 APS_reduc 5'-adenylylsulfate reductase, thioredoxi 97.74
PTZ00102 477 disulphide isomerase; Provisional 97.73
PRK14018 521 trifunctional thioredoxin/methionine sulfoxide red 97.71
cd02965111 HyaE HyaE family; HyaE is also called HupG and Hox 97.67
PRK13728181 conjugal transfer protein TrbB; Provisional 97.59
PTZ00102477 disulphide isomerase; Provisional 97.58
cd03008146 TryX_like_RdCVF Tryparedoxin (TryX)-like family, R 97.57
cd02988192 Phd_like_VIAF Phosducin (Phd)-like family, Viral i 97.57
cd02964132 TryX_like_family Tryparedoxin (TryX)-like family; 97.55
PLN02309457 5'-adenylylsulfate reductase 97.52
PRK13703248 conjugal pilus assembly protein TraF; Provisional 97.49
TIGR02739256 TraF type-F conjugative transfer system pilin asse 97.49
PLN02919 1057 haloacid dehalogenase-like hydrolase family protei 97.49
smart0080463 TAP_C C-terminal domain of vertebrate Tap protein. 97.49
TIGR02187215 GlrX_arch Glutaredoxin-like domain protein. This f 97.42
PTZ00062204 glutaredoxin; Provisional 97.4
cd02969171 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot 97.37
PTZ00056199 glutathione peroxidase; Provisional 97.35
PF13728215 TraF: F plasmid transfer operon protein 97.29
PF1390595 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ 97.26
TIGR02661189 MauD methylamine dehydrogenase accessory protein M 97.22
cd03017140 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit 97.21
PHA0212575 thioredoxin-like protein 97.2
PLN02399236 phospholipid hydroperoxide glutathione peroxidase 97.17
cd03007116 PDI_a_ERp29_N PDIa family, endoplasmic reticulum p 97.13
cd03012126 TlpA_like_DipZ_like TlpA-like family, DipZ-like su 97.09
KOG0908 288 consensus Thioredoxin-like protein [Posttranslatio 97.08
TIGR0041182 redox_disulf_1 small redox-active disulfide protei 97.08
PF0394351 TAP_C: TAP C-terminal domain; InterPro: IPR005637 97.03
COG3118304 Thioredoxin domain-containing protein [Posttransla 97.01
PLN02412167 probable glutathione peroxidase 97.01
cd00340152 GSH_Peroxidase Glutathione (GSH) peroxidase family 96.95
cd02967114 mauD Methylamine utilization (mau) D family; mauD 96.94
TIGR01130462 ER_PDI_fam protein disulfide isomerases, eukaryoti 96.92
cd03015173 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- 96.72
TIGR0041276 redox_disulf_2 small redox-active disulfide protei 96.7
PRK09437154 bcp thioredoxin-dependent thiol peroxidase; Review 96.68
TIGR02540153 gpx7 putative glutathione peroxidase Gpx7. This mo 96.67
TIGR03137187 AhpC peroxiredoxin. This gene contains two invaria 96.66
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 96.59
cd0019438 UBA Ubiquitin Associated domain. The UBA domain is 96.54
PRK15000200 peroxidase; Provisional 96.47
smart0016537 UBA Ubiquitin associated domain. Present in Rad23, 96.47
PRK10382187 alkyl hydroperoxide reductase subunit C; Provision 96.46
PF08534146 Redoxin: Redoxin; InterPro: IPR013740 This redoxin 96.35
KOG2501157 consensus Thioredoxin, nucleoredoxin and related p 96.35
KOG2244 786 consensus Highly conserved protein containing a th 96.3
PF00578124 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per 96.23
TIGR02187215 GlrX_arch Glutaredoxin-like domain protein. This f 96.17
PRK00522167 tpx lipid hydroperoxide peroxidase; Provisional 95.97
KOG1364 356 consensus Predicted ubiquitin regulatory protein, 95.92
PTZ00253199 tryparedoxin peroxidase; Provisional 95.89
PRK11509132 hydrogenase-1 operon protein HyaE; Provisional 95.82
PTZ00137261 2-Cys peroxiredoxin; Provisional 95.67
PRK13190202 putative peroxiredoxin; Provisional 95.39
KOG0191 383 consensus Thioredoxin/protein disulfide isomerase 95.32
cd0302689 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid 95.3
PTZ00256183 glutathione peroxidase; Provisional 95.21
TIGR01626184 ytfJ_HI0045 conserved hypothetical protein YtfJ-fa 95.19
KOG0190 493 consensus Protein disulfide isomerase (prolyl 4-hy 94.98
cd02971140 PRX_family Peroxiredoxin (PRX) family; composed of 94.92
KOG0912 375 consensus Thiol-disulfide isomerase and thioredoxi 94.35
cd02968142 SCO SCO (an acronym for Synthesis of Cytochrome c 94.25
PRK13189222 peroxiredoxin; Provisional 94.24
PRK13191215 putative peroxiredoxin; Provisional 94.23
cd03014143 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 94.17
cd03016203 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub 93.94
PRK13599215 putative peroxiredoxin; Provisional 93.89
cd0297367 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- 93.73
PF13848184 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ 93.7
cd0165969 TRX_superfamily Thioredoxin (TRX) superfamily; a l 93.55
cd03018149 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik 93.52
cd02970149 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot 93.43
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 92.86
smart0054643 CUE Domain that may be involved in binding ubiquit 92.44
PF1319276 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY 92.11
KOG2086380 consensus Protein tyrosine phosphatase SHP1/Cofact 91.05
PRK10606183 btuE putative glutathione peroxidase; Provisional 90.34
PF02114265 Phosducin: Phosducin; InterPro: IPR024253 The oute 90.18
KOG4351244 consensus Uncharacterized conserved protein [Funct 89.87
TIGR00264116 alpha-NAC-related protein. This hypothetical prote 89.68
PRK06369115 nac nascent polypeptide-associated complex protein 88.9
PF14595129 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. 88.59
KOG0191383 consensus Thioredoxin/protein disulfide isomerase 88.56
PF06110119 DUF953: Eukaryotic protein of unknown function (DU 88.5
COG0526127 TrxA Thiol-disulfide isomerase and thioredoxins [P 88.33
cd02983130 P5_C P5 family, C-terminal redox inactive TRX-like 88.27
PRK11657251 dsbG disulfide isomerase/thiol-disulfide oxidase; 88.23
COG1225157 Bcp Peroxiredoxin [Posttranslational modification, 87.9
TIGR0219674 GlrX_YruB Glutaredoxin-like protein, YruB-family. 87.54
PRK10877232 protein disulfide isomerase II DsbC; Provisional 87.09
TIGR03143555 AhpF_homolog putative alkyl hydroperoxide reductas 82.95
KOG4277 468 consensus Uncharacterized conserved protein, conta 82.86
KOG0190493 consensus Protein disulfide isomerase (prolyl 4-hy 82.16
COG1308122 EGD2 Transcription factor homologous to NACalpha-B 80.26
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-34  Score=271.73  Aligned_cols=237  Identities=30%  Similarity=0.508  Sum_probs=180.8

Q ss_pred             chhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCcccccCCCCCCCc
Q 021955            5 SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYE   84 (305)
Q Consensus         5 s~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~~~~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~d~   84 (305)
                      ..++..+|.+||+||..++.+.|++||++++|||+.||+|||++++.....+.+...|                      
T Consensus         3 ~~~~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~~s~~~~a~----------------------   60 (356)
T KOG1364|consen    3 TGAQRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQVYSSSSAAP----------------------   60 (356)
T ss_pred             cchHHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccccCCcccCC----------------------
Confidence            3468899999999955599999999999999999999999999886433322100000                      


Q ss_pred             ccCC-CCccccccc-----------------C---CCCCcchHHHHhhhhCCCccccccccHHHHHHHHHHcCCeEEEEe
Q 021955           85 VCVP-PHAKDLFYN-----------------D---ASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNL  143 (305)
Q Consensus        85 VRaP-p~~~etL~~-----------------~---~~~~~~~~~~la~lFrPP~~l~~~gsf~~A~~~Ak~~~KwLLVni  143 (305)
                        .| +.++++|++                 +   .+...++..+|+.|||||++|||+|+++.|+..|.++.+||||  
T Consensus        61 --sp~~~~re~l~~~~~~~d~~~~s~~~p~~~~~~~s~~~~~~srL~slfrpp~~i~~~gsld~ak~~a~sk~~wllV--  136 (356)
T KOG1364|consen   61 --SPIEPQREVLFDPLGIMDQSTSSILDPSENQDDESEHASSQSRLASLFRPPTDILSHGSLDAAKSTASSKQRWLLV--  136 (356)
T ss_pred             --CcccccceeeeccccccccCcccccCcccccchhhhhccccchhhhhcCCCcchhhcCChhhhhhcccccceEEEE--
Confidence              02 222333322                 0   0123455889999999999999999999999999999999999  


Q ss_pred             ecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHH
Q 021955          144 QSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLG  223 (305)
Q Consensus       144 q~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l  223 (305)
                                                        +.|+.||++|.++|++.+.|||+||||+||++|++|.|.+.|++|+
T Consensus       137 ----------------------------------~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl  182 (356)
T KOG1364|consen  137 ----------------------------------LDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFL  182 (356)
T ss_pred             ----------------------------------eeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHH
Confidence                                              5688999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCcc-cccccccCCCC----------ChHHHHHHHhhHhccCCCCCCCCCcCccccccccccccc-ccc
Q 021955          224 EMLLPFMDRSPRKCA-TIIIERQRASS----------TTPQRNIKASMETIKDTIGVSPSDADVTSADKEATSTTQ-GTA  291 (305)
Q Consensus       224 ~~L~~fl~~~~~~~~-~~~~k~~~~~~----------~~~~~A~~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  291 (305)
                      ..|++||+.+++++. +....++|...          .++++|+++|+.++.....  .++.....+++.|+|... ..+
T Consensus       183 ~~l~~Fi~~~~~d~vas~t~n~~~p~~e~~~~ss~e~~~~elai~~sv~~~~~~~e--~e~~~~s~~ee~e~~~e~~~~~  260 (356)
T KOG1364|consen  183 SDLNEFIDSCPHDEVASLTRNRKRPKTEPTCLSSEEDMQMELAIKNSVVNPSSGTE--FEGQGASDEEELETVLEEDLFV  260 (356)
T ss_pred             HHHHHHHhcCCccccccccccccCCCCCccccccccchhhhcccccccccCCCccc--ccCCCCcccchhhccccccccc
Confidence            999999999999943 23322322211          1246999999988765422  222234444445666655 789


Q ss_pred             CCCCCCCCCCCC
Q 021955          292 YPALPEEPNVDG  303 (305)
Q Consensus       292 ~~~~~~ep~~~~  303 (305)
                      +|.+.+||+++-
T Consensus       261 ~~~a~~ep~~~~  272 (356)
T KOG1364|consen  261 FPVATVEPKGDC  272 (356)
T ss_pred             cceeeecCCCCC
Confidence            999999999853

>smart00594 UAS UAS domain Back     alignment and domain information
>cd02958 UAS UAS family; UAS is a domain of unknown function Back     alignment and domain information
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals Back     alignment and domain information
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain Back     alignment and domain information
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A Back     alignment and domain information
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms] Back     alignment and domain information
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation Back     alignment and domain information
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif Back     alignment and domain information
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD Back     alignment and domain information
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins Back     alignment and domain information
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A Back     alignment and domain information
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional Back     alignment and domain information
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain Back     alignment and domain information
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus Back     alignment and domain information
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only] Back     alignment and domain information
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif Back     alignment and domain information
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain Back     alignment and domain information
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) Back     alignment and domain information
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms Back     alignment and domain information
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains Back     alignment and domain information
>PRK10996 thioredoxin 2; Provisional Back     alignment and domain information
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain Back     alignment and domain information
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases Back     alignment and domain information
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02278 thioredoxin-like protein Back     alignment and domain information
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 Back     alignment and domain information
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes Back     alignment and domain information
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein Back     alignment and domain information
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein Back     alignment and domain information
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] Back     alignment and domain information
>PLN00410 U5 snRNP protein, DIM1 family; Provisional Back     alignment and domain information
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox Back     alignment and domain information
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants Back     alignment and domain information
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus Back     alignment and domain information
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 Back     alignment and domain information
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains Back     alignment and domain information
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention Back     alignment and domain information
>PRK09381 trxA thioredoxin; Provisional Back     alignment and domain information
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains Back     alignment and domain information
>PTZ00051 thioredoxin; Provisional Back     alignment and domain information
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein Back     alignment and domain information
>TIGR01068 thioredoxin thioredoxin Back     alignment and domain information
>TIGR01126 pdi_dom protein disulfide-isomerase domain Back     alignment and domain information
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains Back     alignment and domain information
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX Back     alignment and domain information
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif Back     alignment and domain information
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 Back     alignment and domain information
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional Back     alignment and domain information
>TIGR02740 TraF-like TraF-like protein Back     alignment and domain information
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 Back     alignment and domain information
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions Back     alignment and domain information
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains Back     alignment and domain information
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions Back     alignment and domain information
>PRK03147 thiol-disulfide oxidoreductase; Provisional Back     alignment and domain information
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB Back     alignment and domain information
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) Back     alignment and domain information
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif Back     alignment and domain information
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative Back     alignment and domain information
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle Back     alignment and domain information
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding Back     alignment and domain information
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif Back     alignment and domain information
>PTZ00443 Thioredoxin domain-containing protein; Provisional Back     alignment and domain information
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins Back     alignment and domain information
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif Back     alignment and domain information
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants Back     alignment and domain information
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 Back     alignment and domain information
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library Back     alignment and domain information
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein Back     alignment and domain information
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic Back     alignment and domain information
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent Back     alignment and domain information
>PTZ00102 disulphide isomerase; Provisional Back     alignment and domain information
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional Back     alignment and domain information
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO Back     alignment and domain information
>PRK13728 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PTZ00102 disulphide isomerase; Provisional Back     alignment and domain information
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors Back     alignment and domain information
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis Back     alignment and domain information
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX Back     alignment and domain information
>PLN02309 5'-adenylylsulfate reductase Back     alignment and domain information
>PRK13703 conjugal pilus assembly protein TraF; Provisional Back     alignment and domain information
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein Back     alignment and domain information
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein Back     alignment and domain information
>PTZ00062 glutaredoxin; Provisional Back     alignment and domain information
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs Back     alignment and domain information
>PTZ00056 glutathione peroxidase; Provisional Back     alignment and domain information
>PF13728 TraF: F plasmid transfer operon protein Back     alignment and domain information
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A Back     alignment and domain information
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD Back     alignment and domain information
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides Back     alignment and domain information
>PHA02125 thioredoxin-like protein Back     alignment and domain information
>PLN02399 phospholipid hydroperoxide glutathione peroxidase Back     alignment and domain information
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells Back     alignment and domain information
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain Back     alignment and domain information
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 Back     alignment and domain information
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1) Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02412 probable glutathione peroxidase Back     alignment and domain information
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate Back     alignment and domain information
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source Back     alignment and domain information
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic Back     alignment and domain information
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides Back     alignment and domain information
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 Back     alignment and domain information
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed Back     alignment and domain information
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7 Back     alignment and domain information
>TIGR03137 AhpC peroxiredoxin Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>cd00194 UBA Ubiquitin Associated domain Back     alignment and domain information
>PRK15000 peroxidase; Provisional Back     alignment and domain information
>smart00165 UBA Ubiquitin associated domain Back     alignment and domain information
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional Back     alignment and domain information
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins Back     alignment and domain information
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] Back     alignment and domain information
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only] Back     alignment and domain information
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells Back     alignment and domain information
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein Back     alignment and domain information
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional Back     alignment and domain information
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00253 tryparedoxin peroxidase; Provisional Back     alignment and domain information
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional Back     alignment and domain information
>PTZ00137 2-Cys peroxiredoxin; Provisional Back     alignment and domain information
>PRK13190 putative peroxiredoxin; Provisional Back     alignment and domain information
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides Back     alignment and domain information
>PTZ00256 glutathione peroxidase; Provisional Back     alignment and domain information
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 Back     alignment and domain information
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified Back     alignment and domain information
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] Back     alignment and domain information
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold Back     alignment and domain information
>PRK13189 peroxiredoxin; Provisional Back     alignment and domain information
>PRK13191 putative peroxiredoxin; Provisional Back     alignment and domain information
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) Back     alignment and domain information
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine Back     alignment and domain information
>PRK13599 putative peroxiredoxin; Provisional Back     alignment and domain information
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) Back     alignment and domain information
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A Back     alignment and domain information
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold Back     alignment and domain information
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE Back     alignment and domain information
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B Back     alignment and domain information
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure] Back     alignment and domain information
>PRK10606 btuE putative glutathione peroxidase; Provisional Back     alignment and domain information
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin Back     alignment and domain information
>KOG4351 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00264 alpha-NAC-related protein Back     alignment and domain information
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed Back     alignment and domain information
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A Back     alignment and domain information
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like Back     alignment and domain information
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] Back     alignment and domain information
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) Back     alignment and domain information
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional Back     alignment and domain information
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family Back     alignment and domain information
>PRK10877 protein disulfide isomerase II DsbC; Provisional Back     alignment and domain information
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit Back     alignment and domain information
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] Back     alignment and domain information
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
2dlx_A153 Solution Structure Of The Uas Domain Of Human Ubx D 7e-28
>pdb|2DLX|A Chain A, Solution Structure Of The Uas Domain Of Human Ubx Domain- Containing Protein 7 Length = 153 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (302), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 72/115 (62%)
Query: 99  ASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDT 158
           +S  D     LA L+RPP  +M  GSFE AK+    Q+KWL++N+Q+ ++F+   LNRD 
Sbjct: 5   SSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDV 64
Query: 159 WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSW 213
           W NEAV  II  +FIFWQ Y D+ EG +   FY +   P V ++DP TGQK+  W
Sbjct: 65  WSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW 119

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
2dlx_A153 UBX domain-containing protein 7; UAS domain, prote 4e-47
2ec4_A178 FAS-associated factor 1; UAS domain, protein FAF1, 4e-08
2lst_A130 Thioredoxin; structural genomics, NEW YORK structu 1e-04
3k1f_M197 Transcription initiation factor IIB; RNA polymeras 5e-04
2kuc_A130 Putative disulphide-isomerase; structural genomics 6e-04
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153 Back     alignment and structure
 Score =  154 bits (391), Expect = 4e-47
 Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 1/134 (0%)

Query: 99  ASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDT 158
           +S  D     LA L+RPP  +M  GSFE AK+    Q+KWL++N+Q+ ++F+   LNRD 
Sbjct: 5   SSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDV 64

Query: 159 WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMIN 218
           W NEAV  II  +FIFWQ Y D+ EG +   FY +   P V ++DP TGQK+  W  + +
Sbjct: 65  WSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQL-D 123

Query: 219 PQPLGEMLLPFMDR 232
                + +  F+  
Sbjct: 124 VSSFLDQVTGFLGE 137
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 178 Back     alignment and structure
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130 Back     alignment and structure
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Back     alignment and structure
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
2dlx_A153 UBX domain-containing protein 7; UAS domain, prote 100.0
2ec4_A178 FAS-associated factor 1; UAS domain, protein FAF1, 99.96
3f9u_A172 Putative exported cytochrome C biogenesis-related; 99.56
2kuc_A130 Putative disulphide-isomerase; structural genomics 99.5
2lst_A130 Thioredoxin; structural genomics, NEW YORK structu 99.2
2ju5_A154 Thioredoxin disulfide isomerase; protein, oxidored 99.46
3ph9_A151 Anterior gradient protein 3 homolog; thioredoxin f 99.45
3ira_A173 Conserved protein; methanosarcina mazei,structural 99.38
1v92_A46 NSFL1 cofactor P47; 3-helix bundle, recombination; 99.34
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 99.32
3fk8_A133 Disulphide isomerase; APC61824.1, xylella fastidio 99.3
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 99.29
2fwh_A134 Thiol:disulfide interchange protein DSBD; thioredo 99.29
3e21_A45 HFAF1, FAS-associated factor 1; UBA, alternative s 99.26
2dzl_A66 Protein FAM100B; UBA-like domain, structural genom 99.2
1ep7_A112 Thioredoxin CH1, H-type; electron transport; 2.10A 99.02
1xfl_A124 Thioredoxin H1; AT3G51030, structural genomics, pr 99.0
2l57_A126 Uncharacterized protein; structural genomics, unkn 99.0
2vm1_A118 Thioredoxin, thioredoxin H isoform 1.; oxidoreduct 98.98
3zzx_A105 Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va 98.97
3qfa_C116 Thioredoxin; protein-protein complex, rossmann fol 98.97
2vlu_A122 Thioredoxin, thioredoxin H isoform 2.; oxidoreduct 98.96
3d22_A139 TRXH4, thioredoxin H-type; electron transport, cyt 98.95
1ti3_A113 Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul 98.94
2dml_A130 Protein disulfide-isomerase A6; thioredoxin domain 98.93
3tco_A109 Thioredoxin (TRXA-1); disulfide oxidoreductase, ox 98.91
3gnj_A111 Thioredoxin domain protein; APC92103, STR genomics 98.89
3dml_A116 Putative uncharacterized protein; thioredoxin, oxi 98.88
2voc_A112 Thioredoxin; electron transport, homodimer, disulf 98.87
1thx_A115 Thioredoxin, thioredoxin 2; oxido-reductase, elect 98.86
3p2a_A148 Thioredoxin 2, putative thioredoxin-like protein; 98.86
1x5d_A133 Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC 98.86
3d6i_A112 Monothiol glutaredoxin-3; thioredoxin-like, electr 98.86
3die_A106 Thioredoxin, TRX; electron transport, SWAP domain, 98.85
1w4v_A119 Thioredoxin, mitochondrial; antioxidant enzyme, mi 98.84
1dby_A107 Chloroplast thioredoxin M CH2; thioredoxin CH2, ch 98.84
2yzu_A109 Thioredoxin; redox protein, electron transport, st 98.83
2i4a_A107 Thioredoxin; acidophIle, disulfide exchange, oxido 98.82
1r26_A125 Thioredoxin; redox-active disulfide, electron tran 98.82
2e0q_A104 Thioredoxin; electron transport; 1.49A {Sulfolobus 98.82
2trx_A108 Thioredoxin; electron transport; 1.68A {Escherichi 98.82
1nsw_A105 Thioredoxin, TRX; thermostability, electron transp 98.82
3hz4_A140 Thioredoxin; NYSGXRC, PSI-II, reduced form, protei 98.8
3f3q_A109 Thioredoxin-1; His TAG, electron transport, cytopl 98.8
1sen_A164 Thioredoxin-like protein P19; endoplasmic reticulu 98.8
4euy_A105 Uncharacterized protein; structural genomics, PSI- 98.8
1t00_A112 Thioredoxin, TRX; redox regulation, multifunction 98.79
3m9j_A105 Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} 98.79
3hxs_A141 Thioredoxin, TRXP; electron transport; 2.00A {Bact 98.79
3uvt_A111 Thioredoxin domain-containing protein 5; thioredox 98.79
3ul3_B128 Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 98.78
2dj1_A140 Protein disulfide-isomerase A4; protein ERP-72, ER 98.78
2l5l_A136 Thioredoxin; structural genomics, electron transpo 98.78
1fb6_A105 Thioredoxin M; electron transport; 2.10A {Spinacia 98.78
2o8v_B128 Thioredoxin 1; disulfide crosslinked complex, oxid 98.77
1gh2_A107 Thioredoxin-like protein; redox-active center, ele 98.77
1syr_A112 Thioredoxin; SGPP, structural genomics, PSI, prote 98.76
1xwb_A106 Thioredoxin; dimerization, redox regulation, THI X 98.76
1wmj_A130 Thioredoxin H-type; structural genomics, program f 98.75
2xc2_A117 Thioredoxinn; oxidoreductase, protein disulfide re 98.75
2f51_A118 Thioredoxin; electron transport; 1.90A {Trichomona 98.75
2b5x_A148 YKUV protein, TRXY; thioredoxin-like, oxidoreducta 98.73
2f9s_A151 Thiol-disulfide oxidoreductase RESA; thioredoxin-l 98.72
2ppt_A155 Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc 98.72
2i1u_A121 Thioredoxin, TRX, MPT46; redox protein, electron t 98.71
2wz9_A153 Glutaredoxin-3; protein binding; 1.55A {Homo sapie 98.71
1zzo_A136 RV1677; thioredoxin fold, structural genomics, PSI 98.71
3raz_A151 Thioredoxin-related protein; structural genomics, 98.7
3aps_A122 DNAJ homolog subfamily C member 10; thioredoxin fo 98.69
2lja_A152 Putative thiol-disulfide oxidoreductase; structura 98.69
2oe3_A114 Thioredoxin-3; electron transport, alpha/beta sand 98.69
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 98.69
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 98.68
1lu4_A136 Soluble secreted antigen MPT53; thioredoxin-like f 98.67
2vim_A104 Thioredoxin, TRX; thioredoxin fold, oxidoreductase 98.67
1v98_A140 Thioredoxin; oxidoreductase, structural genomics, 98.67
2j23_A121 Thioredoxin; immune protein, autoreactivity, cross 98.65
3dxb_A222 Thioredoxin N-terminally fused to PUF60(UHM); spli 98.64
2l6c_A110 Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu 98.63
3h79_A127 Thioredoxin-like protein; thioredoxin fold, cataly 98.63
3cxg_A133 Putative thioredoxin; malaria, structural GEN oxid 98.63
1mek_A120 Protein disulfide isomerase; electron transport, r 98.62
3erw_A145 Sporulation thiol-disulfide oxidoreductase A; thio 98.62
3lor_A160 Thiol-disulfide isomerase and thioredoxins; PSI, M 98.62
3kh7_A176 Thiol:disulfide interchange protein DSBE; TRX-like 98.62
3gix_A149 Thioredoxin-like protein 4B; PRE-mRNA splicing, TX 98.61
2b1k_A168 Thiol:disulfide interchange protein DSBE; C-termin 98.61
3fkf_A148 Thiol-disulfide oxidoreductase; structural genomic 98.61
1kng_A156 Thiol:disulfide interchange protein CYCY; thioredo 98.61
3hcz_A148 Possible thiol-disulfide isomerase; APC61559.2, cy 98.61
4evm_A138 Thioredoxin family protein; structural genomics, n 98.59
2av4_A160 Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI 98.59
3emx_A135 Thioredoxin; structural genomics, oxidoreductase, 98.58
1faa_A124 Thioredoxin F; electron transport; 1.85A {Spinacia 98.58
1zma_A118 Bacterocin transport accessory protein; alpha-beta 98.57
3or5_A165 Thiol:disulfide interchange protein, thioredoxin p 98.56
2l5o_A153 Putative thioredoxin; structural genomics, unknown 98.56
2pu9_C111 TRX-F, thioredoxin F-type, chloroplast; protein-pr 98.56
3lwa_A183 Secreted thiol-disulfide isomerase; thioredoxin, P 98.55
1oaz_A123 Thioredoxin 1; immune system, antibody/complex, an 98.51
2yj7_A106 LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti 97.92
1qgv_A142 Spliceosomal protein U5-15KD; snRNP, thioredoxin, 98.51
3eyt_A158 Uncharacterized protein SPOA0173; thioredoxin-like 98.5
2lrn_A152 Thiol:disulfide interchange protein; structural ge 98.49
3gl3_A152 Putative thiol:disulfide interchange protein DSBE; 98.49
2dbc_A135 PDCL2, unnamed protein product; phosducin-like pro 98.47
2h30_A164 Thioredoxin, peptide methionine sulfoxide reductas 98.46
3kcm_A154 Thioredoxin family protein; SGX, thioredoxin prote 98.45
3q6o_A244 Sulfhydryl oxidase 1; protein disulfide isomerase, 98.45
2ggt_A164 SCO1 protein homolog, mitochondrial; copper chaper 98.44
3ia1_A154 THIO-disulfide isomerase/thioredoxin; oxidoreducta 98.44
2qsi_A137 Putative hydrogenase expression/formation protein; 98.42
2dj0_A137 Thioredoxin-related transmembrane protein 2; AVLA2 98.42
2qgv_A140 Hydrogenase-1 operon protein HYAE; alpha-beta prot 98.41
2lrt_A152 Uncharacterized protein; structural genomics, thio 98.39
1jfu_A186 Thiol:disulfide interchange protein TLPA; thioredo 98.39
3hdc_A158 Thioredoxin family protein; ATCC53774, DSM 7210, , 98.38
2djj_A121 PDI, protein disulfide-isomerase; thioredoxin fold 98.38
3bq3_A270 Defective in cullin neddylation protein 1; ubiquit 98.37
3ed3_A298 Protein disulfide-isomerase MPD1; thioredoxin-like 98.37
1x5e_A126 Thioredoxin domain containing protein 1; TMX, TXND 98.37
1a8l_A226 Protein disulfide oxidoreductase; PDI, thioredoxin 98.35
2dj3_A133 Protein disulfide-isomerase A4; protein ERP-72, ER 98.34
3idv_A241 Protein disulfide-isomerase A4; thioredoxin-like f 98.34
2rli_A171 SCO2 protein homolog, mitochondrial; copper protei 98.33
3t58_A 519 Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. 98.32
3fw2_A150 Thiol-disulfide oxidoreductase; structural genomic 98.32
3ha9_A165 Uncharacterized thioredoxin-like protein; PSI, MCS 98.31
2es7_A142 Q8ZP25_salty, putative thiol-disulfide isomerase a 98.3
2ywi_A196 Hypothetical conserved protein; uncharacterized co 98.25
3eur_A142 Uncharacterized protein; PSI2,MCSG, conserved prot 98.23
3ewl_A142 Uncharacterized conserved protein BF1870; alpha-be 98.23
1a0r_P245 Phosducin, MEKA, PP33; transducin, beta-gamma, sig 98.21
1nho_A85 Probable thioredoxin; beta sheet, alpha helix, oxi 98.21
1wou_A123 Thioredoxin -related protein, 14 kDa; electron tra 98.2
1i5g_A144 Tryparedoxin II; electron transport; HET: TS5; 1.4 98.2
1o8x_A146 Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot 98.19
3drn_A161 Peroxiredoxin, bacterioferritin comigratory prote 98.18
2hyx_A352 Protein DIPZ; thioredoxin fold, jelly-roll, struct 98.17
1o73_A144 Tryparedoxin; electron transport, trypanosomatid, 98.15
2p5q_A170 Glutathione peroxidase 5; thioredoxin fold, oxidor 98.15
2trc_P217 Phosducin, MEKA, PP33; transducin, beta-gamma, sig 98.15
3cmi_A171 Peroxiredoxin HYR1; thioredoxin-like fold, oxidore 98.15
1fo5_A85 Thioredoxin; disulfide oxidoreductase, structural 98.13
2v1m_A169 Glutathione peroxidase; selenium, selenocysteine, 98.13
3s9f_A165 Tryparedoxin; thioredoxin fold, disulfide reductas 98.12
2vup_A190 Glutathione peroxidase-like protein; oxidoreductas 98.11
3idv_A241 Protein disulfide-isomerase A4; thioredoxin-like f 98.1
2b5e_A 504 Protein disulfide-isomerase; 2.40A {Saccharomyces 98.09
3f8u_A 481 Protein disulfide-isomerase A3ERP57; endoplasmic r 98.06
2bmx_A195 Alkyl hydroperoxidase C; peroxiredoxin, antioxidan 98.05
2r2j_A 382 Thioredoxin domain-containing protein 4; CRFS moti 98.04
1zof_A198 Alkyl hydroperoxide-reductase; decamer, toroide-sh 98.03
1xvw_A160 Hypothetical protein RV2238C/MT2298; thioredoxin f 98.03
4fo5_A143 Thioredoxin-like protein; AHPC/TSA family protein, 98.03
3dwv_A187 Glutathione peroxidase-like protein; alpha beta, 3 98.03
1we0_A187 Alkyl hydroperoxide reductase C; peroxiredoxin, AH 98.03
2cvb_A188 Probable thiol-disulfide isomerase/thioredoxin; re 98.02
3kp8_A106 Vkorc1/thioredoxin domain protein; blood coagulati 98.01
3f8u_A481 Protein disulfide-isomerase A3ERP57; endoplasmic r 98.01
3evi_A118 Phosducin-like protein 2; alpha beta, 3-layer(ABA) 98.0
1sji_A 350 Calsequestrin 2, calsequestrin, cardiac muscle iso 98.0
1ilo_A77 Conserved hypothetical protein MTH895; beta-alpha- 97.97
3iv4_A112 Putative oxidoreductase; APC23140, meticillin-resi 97.95
3uem_A361 Protein disulfide-isomerase; thioredoxin-like doma 97.93
2k6v_A172 Putative cytochrome C oxidase assembly protein; th 97.92
2obi_A183 PHGPX, GPX-4, phospholipid hydroperoxide glutathio 97.92
3us3_A 367 Calsequestrin-1; calcium-binding protein; 1.74A {O 97.91
2ywm_A229 Glutaredoxin-like protein; redox protein, structur 97.89
3kij_A180 Probable glutathione peroxidase 8; human PDI-perox 97.88
2h01_A192 2-Cys peroxiredoxin; thioredoxin peroxidase, struc 97.88
1uul_A202 Tryparedoxin peroxidase homologue; peroxiredoxin, 97.87
1zye_A220 Thioredoxin-dependent peroxide reductase; catenane 97.87
2djk_A133 PDI, protein disulfide-isomerase; thioredoxin fold 97.84
1a8l_A226 Protein disulfide oxidoreductase; PDI, thioredoxin 97.82
1z6n_A167 Hypothetical protein PA1234; alpha-beta-alpha sand 97.81
1qmv_A197 Human thioredoxin peroxidase-B; peroxiredoxin, sul 97.8
2p31_A181 CL683, glutathione peroxidase 7; thioredoxin fold, 97.8
3u5r_E218 Uncharacterized protein; structural genomics, PSI- 97.79
2i81_A213 2-Cys peroxiredoxin; structural genomics consortiu 97.79
2b7k_A200 SCO1 protein; metallochaperone, cytochrome C oxida 97.78
2gs3_A185 PHGPX, GPX-4, phospholipid hydroperoxide glutathio 97.78
2f8a_A208 Glutathione peroxidase 1; thioredoxin fold, struct 97.71
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 97.69
2ls5_A159 Uncharacterized protein; structural genomics, unkn 96.85
2b5e_A504 Protein disulfide-isomerase; 2.40A {Saccharomyces 97.67
1oai_A59 Nuclear RNA export factor; nuclear transport, nucl 97.65
3qcp_A 470 QSOX from trypanosoma brucei (tbqsox); ERV fold, t 97.62
3ga4_A178 Dolichyl-diphosphooligosaccharide-protein glycosyl 97.61
1xzo_A174 BSSCO, hypothetical protein YPMQ; thioredoxin-like 97.61
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 97.58
2hls_A243 Protein disulfide oxidoreductase; thioredoxin fold 97.58
3ztl_A222 Thioredoxin peroxidase; oxidoreductase, reductase, 97.57
2jsy_A167 Probable thiol peroxidase; solution structure, ant 97.55
3gkn_A163 Bacterioferritin comigratory protein; BCP, PRX, at 97.54
3apo_A780 DNAJ homolog subfamily C member 10; PDI family, th 97.49
1wj7_A104 Hypothetical protein (RSGI RUH-015); UBA domain, u 97.45
2lus_A143 Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci 96.55
3a2v_A249 Probable peroxiredoxin; thioredoxin peroxidase, hy 97.41
4gqc_A164 Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f 97.38
2jp7_A57 MRNA export factor MEX67; solution MEX67, UBA, tra 97.36
1xvq_A175 Thiol peroxidase; thioredoxin fold, structural gen 97.33
2ywm_A229 Glutaredoxin-like protein; redox protein, structur 97.3
2c0g_A248 ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, 97.26
2i3y_A215 Epididymal secretory glutathione peroxidase; thior 97.26
2qc7_A240 ERP31, ERP28, endoplasmic reticulum protein ERP29; 97.23
2c0d_A221 Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th 97.21
4g2e_A157 Peroxiredoxin; redox protein, structural genomics, 97.2
2r37_A207 Glutathione peroxidase 3; plasma, structural genom 97.17
2pn8_A211 Peroxiredoxin-4; thioredoxin, oxidoreductase, stru 97.13
3ixr_A179 Bacterioferritin comigratory protein; alpha beta p 97.13
2a4v_A159 Peroxiredoxin DOT5; yeast nuclear thiol peroxidase 97.12
1n8j_A186 AHPC, alkyl hydroperoxide reductase C22 protein; p 97.11
2e7p_A116 Glutaredoxin; thioredoxin fold, poplar, electron t 97.05
2yzh_A171 Probable thiol peroxidase; redox protein, antioxid 97.04
3uem_A361 Protein disulfide-isomerase; thioredoxin-like doma 97.02
3me7_A170 Putative uncharacterized protein; electron transfe 97.01
3qpm_A240 Peroxiredoxin; oxidoreductase, thioredoxin fold, p 96.91
1wji_A63 Tudor domain containing protein 3; UBA domain, str 96.9
1dv0_A47 DNA repair protein HHR23A; helical bundle, DNA bin 96.9
4hde_A170 SCO1/SENC family lipoprotein; structural genomics, 96.86
4f9z_D227 Endoplasmic reticulum resident protein 27; thiored 96.84
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 96.83
4gew_A362 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 96.83
3tjj_A254 Peroxiredoxin-4; thioredoxin fold, sulfenylation, 96.81
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 96.81
2dah_A54 Ubiquilin-3; UBA domain, structural genomics, NPPS 96.81
2g3q_A43 Protein YBL047C; endocytosis, solution structure, 96.78
2knz_A53 Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc 96.76
1wjk_A100 C330018D20RIK protein; glutaredoxin, thioredoxin f 96.69
1veg_A83 NEDD8 ultimate buster-1; ubiquitin associated doma 96.66
2bwb_A46 Ubiquitin-like protein DSK2; UBA, signaling protei 96.63
1eej_A216 Thiol:disulfide interchange protein; oxidoreductas 96.61
1psq_A163 Probable thiol peroxidase; structural genomics, NY 96.57
3p7x_A166 Probable thiol peroxidase; thioredoxin fold, oxido 96.54
2jy5_A52 Ubiquilin-1; UBA, alternative splicing, cytoplasm, 96.43
1ttz_A87 Conserved hypothetical protein; structural genomic 96.43
1v58_A241 Thiol:disulfide interchange protein DSBG; reduced 96.42
3gyk_A175 27KDA outer membrane protein; APC61738.2, siliciba 96.37
1wgn_A63 UBAP1, ubiquitin associated protein; ubiquitin ass 96.36
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 96.32
3kp9_A291 Vkorc1/thioredoxin domain protein; warfarin, disul 96.26
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 96.25
2l2d_A73 OTU domain-containing protein 7A; UBA fold, struct 96.23
2cwb_A108 Chimera of immunoglobulin G binding protein G and 96.16
1wiv_A73 UBP14, ubiquitin-specific protease 14; ubiquitin a 96.14
1q98_A165 Thiol peroxidase, TPX; structural genomics, NYSGXR 96.09
3zrd_A200 Thiol peroxidase; oxidoreductase, 2Cys peroxiredox 96.04
2hls_A243 Protein disulfide oxidoreductase; thioredoxin fold 96.04
2dkl_A85 Trinucleotide repeat containing 6C protein; TNRC6C 96.03
1tp9_A162 Peroxiredoxin, PRX D (type II); oligomer, thioredo 96.0
1nm3_A241 Protein HI0572; hybrid, peroxiredoxin, glutaredoxi 95.85
2dak_A63 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 95.84
2v2g_A233 Peroxiredoxin 6; oxidoreductase, antioxidant enzym 95.79
1t3b_A211 Thiol:disulfide interchange protein DSBC; oxidored 95.69
4eo3_A 322 Bacterioferritin comigratory protein/NADH dehydro; 95.6
1hyu_A 521 AHPF, alkyl hydroperoxide reductase subunit F; thi 95.6
3keb_A224 Probable thiol peroxidase; structural genomics, AP 95.46
2dna_A67 Unnamed protein product; ubiquitin associated doma 95.35
2cp8_A54 NEXT to BRCA1 gene 1 protein; UBA domain, structur 95.31
2ooa_A52 E3 ubiquitin-protein ligase CBL-B; alpha-helical d 95.3
1jkg_B250 TAP; NTF2-like domain, transport protein; 1.90A {H 95.28
2k8s_A80 Thioredoxin; dimer, structural genomics, PSI-2, pr 95.17
2dai_A83 Ubadc1, ubiquitin associated domain containing 1; 95.16
1whc_A64 RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain 95.11
2fgx_A107 Putative thioredoxin; NET3, NESG, GFT-glutaredoxin 95.09
1prx_A224 HORF6; peroxiredoxin, hydrogen peroxide, redox reg 95.03
3sbc_A216 Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c 94.88
2cpw_A64 CBL-interacting protein STS-1 variant; ubiquitin a 94.85
1otr_A49 Protein CUE2; protein-protein complex, cell cycle; 94.78
2d9s_A53 CBL E3 ubiquitin protein ligase; UBA domain, dimer 94.78
2ekk_A47 UBA domain from E3 ubiquitin-protein ligase HUWE1; 94.68
2cp9_A64 EF-TS, EF-TSMT, elongation factor TS, mitochondria 94.58
2dag_A74 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 94.5
3uma_A184 Hypothetical peroxiredoxin protein; nysgrc, PSI bi 94.46
1vdl_A80 Ubiquitin carboxyl-terminal hydrolase 25; UBA doma 94.21
3mng_A173 Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, 94.1
3tue_A219 Tryparedoxin peroxidase; thioredoxin fold, peroxir 93.96
3h93_A192 Thiol:disulfide interchange protein DSBA; disulfid 93.72
1vek_A84 UBP14, ubiquitin-specific protease 14, putative; U 93.34
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 93.32
1ego_A85 Glutaredoxin; electron transport; NMR {Escherichia 93.12
2wfc_A167 Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan 92.96
2pwj_A171 Mitochondrial peroxiredoxin; alpha and beta protei 92.88
1xcc_A220 1-Cys peroxiredoxin; unknown function, structural 92.45
2lbc_A126 Ubiquitin carboxyl-terminal hydrolase 13; tandem U 91.85
3hd5_A195 Thiol:disulfide interchange protein DSBA; protein 91.47
2crn_A64 Ubash3A protein; compact three-helix bundle, struc 91.27
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 91.24
2cq9_A130 GLRX2 protein, glutaredoxin 2; glutathione-S-trans 91.07
2znm_A195 Thiol:disulfide interchange protein DSBA; thioredo 91.06
3gv1_A147 Disulfide interchange protein; neisseria gonorrhoe 90.21
3bj5_A147 Protein disulfide-isomerase; thioredoxin fold, cha 89.66
2lva_A129 Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubi 89.11
1fov_A82 Glutaredoxin 3, GRX3; active site disulfide, CIS P 88.68
3rhb_A113 ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox 88.58
3c1r_A118 Glutaredoxin-1; oxidized form, oxidoreductase, cyt 87.27
2ht9_A146 Glutaredoxin-2; thioredoxin fold, iron-sulfur clus 87.22
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 86.88
2dhy_A67 CUE domain-containing protein 1; structural genomi 86.65
1kte_A105 Thioltransferase; redox-active center, electron tr 86.4
3ic4_A92 Glutaredoxin (GRX-1); structural genomics, PSI, MC 86.4
2juj_A56 E3 ubiquitin-protein ligase CBL; alpha helix, UBA 86.22
1r7h_A75 NRDH-redoxin; thioredoxin, glutaredoxin, redox pro 85.95
2lqo_A92 Putative glutaredoxin RV3198.1/MT3292; TRX fold, o 85.64
2yan_A105 Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H 85.46
2oo9_A46 E3 ubiquitin-protein ligase CBL; alpha-helical dom 83.26
2hze_A114 Glutaredoxin-1; thioredoxin fold, arsenic, dimethy 83.16
2rem_A193 Disulfide oxidoreductase; disulfide oxidoreductase 83.16
1tr8_A102 Conserved protein (MTH177); chaperones, nascent po 81.86
1h75_A81 Glutaredoxin-like protein NRDH; electron transport 80.22
3q6o_A244 Sulfhydryl oxidase 1; protein disulfide isomerase, 80.19
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Back     alignment and structure
Probab=100.00  E-value=2.7e-33  Score=239.64  Aligned_cols=134  Identities=40%  Similarity=0.788  Sum_probs=128.0

Q ss_pred             CCcchHHHHhhhhCCCccccccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCC
Q 021955          101 TTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD  180 (305)
Q Consensus       101 ~~~~~~~~la~lFrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~d  180 (305)
                      ..+++.++|+.+|+||+.|+|.++|++|++.||+++|||||+|+++||++|++|+|+||+|++|+++|++|||+|+++++
T Consensus         7 ~~~~~~~~l~~lf~~p~~~~~~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~   86 (153)
T 2dlx_A            7 GIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHD   86 (153)
T ss_dssp             CCCCCCCCCCCTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESS
T ss_pred             CCCchhhHHHHhhCCchhhhcccCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecC
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCC
Q 021955          181 TSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR  235 (305)
Q Consensus       181 s~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~~~~  235 (305)
                      ++++..|++.|++..+|+++||||+||+.+.+|.| +++++|++.|..|++++.-
T Consensus        87 ~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~~  140 (153)
T 2dlx_A           87 SEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHGQ  140 (153)
T ss_dssp             SHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTCS
T ss_pred             CHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999998999998977 8999999999999998753
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Back     alignment and structure
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Back     alignment and structure
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Back     alignment and structure
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A Back     alignment and structure
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} Back     alignment and structure
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Back     alignment and structure
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} Back     alignment and structure
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Back     alignment and structure
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Back     alignment and structure
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Back     alignment and structure
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Back     alignment and structure
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} Back     alignment and structure
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Back     alignment and structure
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Back     alignment and structure
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Back     alignment and structure
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Back     alignment and structure
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 Back     alignment and structure
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 Back     alignment and structure
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Back     alignment and structure
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Back     alignment and structure
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Back     alignment and structure
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Back     alignment and structure
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Back     alignment and structure
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Back     alignment and structure
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Back     alignment and structure
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Back     alignment and structure
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Back     alignment and structure
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Back     alignment and structure
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Back     alignment and structure
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Back     alignment and structure
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Back     alignment and structure
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Back     alignment and structure
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Back     alignment and structure
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Back     alignment and structure
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Back     alignment and structure
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Back     alignment and structure
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Back     alignment and structure
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Back     alignment and structure
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A Back     alignment and structure
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Back     alignment and structure
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Back     alignment and structure
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Back     alignment and structure
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Back     alignment and structure
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Back     alignment and structure
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Back     alignment and structure
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Back     alignment and structure
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Back     alignment and structure
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Back     alignment and structure
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Back     alignment and structure
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Back     alignment and structure
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Back     alignment and structure
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Back     alignment and structure
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Back     alignment and structure
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Back     alignment and structure
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Back     alignment and structure
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Back     alignment and structure
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Back     alignment and structure
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Back     alignment and structure
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Back     alignment and structure
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Back     alignment and structure
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Back     alignment and structure
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Back     alignment and structure
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} Back     alignment and structure
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Back     alignment and structure
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 Back     alignment and structure
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Back     alignment and structure
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Back     alignment and structure
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 Back     alignment and structure
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A Back     alignment and structure
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A Back     alignment and structure
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A Back     alignment and structure
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Back     alignment and structure
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Back     alignment and structure
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Back     alignment and structure
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Back     alignment and structure
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} Back     alignment and structure
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Back     alignment and structure
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Back     alignment and structure
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Back     alignment and structure
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 Back     alignment and structure
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Back     alignment and structure
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Back     alignment and structure
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Back     alignment and structure
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Back     alignment and structure
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A Back     alignment and structure
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Back     alignment and structure
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Back     alignment and structure
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Back     alignment and structure
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Back     alignment and structure
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Back     alignment and structure
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Back     alignment and structure
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A Back     alignment and structure
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Back     alignment and structure
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Back     alignment and structure
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A Back     alignment and structure
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Back     alignment and structure
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Back     alignment and structure
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Back     alignment and structure
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Back     alignment and structure
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Back     alignment and structure
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Back     alignment and structure
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} Back     alignment and structure
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Back     alignment and structure
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Back     alignment and structure
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Back     alignment and structure
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} Back     alignment and structure
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Back     alignment and structure
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Back     alignment and structure
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Back     alignment and structure
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Back     alignment and structure
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A Back     alignment and structure
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Back     alignment and structure
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Back     alignment and structure
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 Back     alignment and structure
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Back     alignment and structure
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A Back     alignment and structure
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Back     alignment and structure
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} Back     alignment and structure
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Back     alignment and structure
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A Back     alignment and structure
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Back     alignment and structure
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} Back     alignment and structure
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Back     alignment and structure
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Back     alignment and structure
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Back     alignment and structure
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Back     alignment and structure
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Back     alignment and structure
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Back     alignment and structure
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Back     alignment and structure
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Back     alignment and structure
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A Back     alignment and structure
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Back     alignment and structure
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A Back     alignment and structure
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Back     alignment and structure
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Back     alignment and structure
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Back     alignment and structure
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Back     alignment and structure
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 Back     alignment and structure
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} Back     alignment and structure
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Back     alignment and structure
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} Back     alignment and structure
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} Back     alignment and structure
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A Back     alignment and structure
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Back     alignment and structure
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A Back     alignment and structure
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Back     alignment and structure
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Back     alignment and structure
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Back     alignment and structure
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A Back     alignment and structure
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Back     alignment and structure
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A Back     alignment and structure
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} Back     alignment and structure
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} Back     alignment and structure
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Back     alignment and structure
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A Back     alignment and structure
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} Back     alignment and structure
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Back     alignment and structure
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Back     alignment and structure
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3 Back     alignment and structure
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Back     alignment and structure
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* Back     alignment and structure
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Back     alignment and structure
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Back     alignment and structure
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Back     alignment and structure
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Back     alignment and structure
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Back     alignment and structure
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A Back     alignment and structure
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A Back     alignment and structure
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Back     alignment and structure
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Back     alignment and structure
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Back     alignment and structure
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} Back     alignment and structure
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Back     alignment and structure
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Back     alignment and structure
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A Back     alignment and structure
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} Back     alignment and structure
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Back     alignment and structure
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Back     alignment and structure
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 Back     alignment and structure
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Back     alignment and structure
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Back     alignment and structure
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Back     alignment and structure
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Back     alignment and structure
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Back     alignment and structure
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Back     alignment and structure
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A Back     alignment and structure
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} Back     alignment and structure
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A Back     alignment and structure
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Back     alignment and structure
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 Back     alignment and structure
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A Back     alignment and structure
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A Back     alignment and structure
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Back     alignment and structure
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 Back     alignment and structure
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B Back     alignment and structure
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A Back     alignment and structure
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A Back     alignment and structure
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} Back     alignment and structure
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A Back     alignment and structure
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Back     alignment and structure
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Back     alignment and structure
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Back     alignment and structure
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 Back     alignment and structure
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 Back     alignment and structure
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Back     alignment and structure
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 Back     alignment and structure
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} Back     alignment and structure
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Back     alignment and structure
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} Back     alignment and structure
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Back     alignment and structure
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A Back     alignment and structure
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} Back     alignment and structure
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} Back     alignment and structure
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Back     alignment and structure
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 Back     alignment and structure
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Back     alignment and structure
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A Back     alignment and structure
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A Back     alignment and structure
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 Back     alignment and structure
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Back     alignment and structure
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} Back     alignment and structure
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} Back     alignment and structure
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Back     alignment and structure
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Back     alignment and structure
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} Back     alignment and structure
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A Back     alignment and structure
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} Back     alignment and structure
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} Back     alignment and structure
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Back     alignment and structure
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Back     alignment and structure
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Back     alignment and structure
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Back     alignment and structure
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} Back     alignment and structure
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} Back     alignment and structure
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Back     alignment and structure
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} Back     alignment and structure
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} Back     alignment and structure
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} Back     alignment and structure
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Back     alignment and structure
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} Back     alignment and structure
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} Back     alignment and structure
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 Back     alignment and structure
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 305
d2dlxa1147 c.47.1.24 (A:1-147) UBX domain-containing protein 1e-28
d1v92a_46 a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA- 7e-05
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 147 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 1e-28
 Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 1/136 (0%)

Query: 99  ASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDT 158
           +S  D     LA L+RPP  +M  GSFE AK+    Q+KWL++N+Q+ ++F+   LNRD 
Sbjct: 5   SSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDV 64

Query: 159 WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMIN 218
           W NEAV  II  +FIFWQ Y D+ EG +   FY +   P V ++DP TGQK+  W   ++
Sbjct: 65  WSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQLD 123

Query: 219 PQPLGEMLLPFMDRSP 234
                + +  F+    
Sbjct: 124 VSSFLDQVTGFLGEHG 139
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 46 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
d2dlxa1147 UBX domain-containing protein 7 {Human (Homo sapie 100.0
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 99.57
d1sena_135 Thioredoxin-like protein p19, TLP19 {Human (Homo s 99.43
d2fwha1117 Thiol:disulfide interchange protein DsbD, C-termin 99.37
d1xfla_114 Thioredoxin {Thale cress (Arabidopsis thaliana) [T 99.11
d1ep7a_112 Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 99.05
d1dbya_107 Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 99.02
d1thxa_108 Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} 98.97
d1gh2a_107 Thioredoxin-like protein, N-terminal domain {Human 98.96
d1fb6a_104 Thioredoxin {Spinach (Spinacia oleracea), thioredo 98.94
d2trxa_108 Thioredoxin {Escherichia coli [TaxId: 562]} 98.91
d2ifqa1105 Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} 98.9
d1nw2a_105 Thioredoxin {Alicyclobacillus acidocaldarius, form 98.88
d1ti3a_113 Thioredoxin {European aspen (Populus tremula), thi 98.88
d1f9ma_112 Thioredoxin {Spinach (Spinacia oleracea), thioredo 98.85
d1xwaa_111 Thioredoxin {Fruit fly (Drosophila melanogaster) [ 98.78
d1r26a_113 Thioredoxin {Trypanosoma brucei [TaxId: 5691]} 98.75
d1z5ye1136 Thioredoxin-like protein CcmG (CycY, DsbE) {Escher 98.72
d1a8la2107 Protein disulfide isomerase, PDI {Archaeon Pyrococ 98.72
d1syra_103 Thioredoxin {Malarial parasite (Plasmodium falcipa 98.66
d1knga_144 Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr 98.54
d2hfda1132 Hydrogenase-1 operon protein HyaE {Escherichia col 98.53
d1zmaa1115 Bacterocin transport accessory protein Bta {Strept 98.41
d2es7a1119 Hydrogenase-1 operon protein HyaE {Salmonella typh 98.41
d2b5ea4119 Protein disulfide isomerase, PDI {Baker's yeast (S 98.4
d1qgva_137 spliceosomal protein U5-15Kd {Human (Homo sapiens) 98.37
d1fo5a_85 MJ0307, thioredoxin/glutaredoxin-like protein {Arc 98.37
d1meka_120 Protein disulfide isomerase, PDI {Human (Homo sapi 98.3
d1st9a_137 Thiol-disulfide oxidoreductase ResA {Bacillus subt 98.25
d1woua_119 Putative 42-9-9 protein (thioredoxin containing pr 98.23
d2fy6a1143 Peptide methionine sulfoxide reductase MsrA/MsrB, 98.23
d1lu4a_134 Soluble secreted antigen MPT53 {Mycobacterium tube 98.03
d1jfua_176 Membrane-anchored thioredoxin-like protein TlpA, s 98.0
d1nhoa_85 MTH807, thioredoxin/glutaredoxin-like protein {Arc 98.0
d1hyua496 Alkyl hydroperoxide reductase subunit F (AhpF), N- 97.95
d2b5xa1143 thiol:disulfide oxidoreductase YkuV {Bacillus subt 97.94
d2b5ea1140 Protein disulfide isomerase, PDI {Baker's yeast (S 97.94
d1o73a_144 Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 97.94
d1zzoa1134 Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI 97.94
d1a8ya1124 Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax 97.94
d1i5ga_144 Tryparedoxin II {Crithidia fasciculata [TaxId: 565 97.93
d2djja1116 Protein disulfide isomerase, PDI {Fungi (Humicola 97.83
d2c0ga2122 Windbeutel, N-terminal domain {Fruit fly (Drosophi 97.8
d1oaia_59 FG-binding, C-terminal domain of TAP {Human (Homo 97.8
d1o8xa_144 Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 97.71
d2g3qa143 Endocytic protein Ede1, YBL047C {Saccharomyces cer 97.64
d2cx4a1160 Bacterioferritin comigratory protein {Archaeon Aer 97.2
d2trcp_217 Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} 96.87
d2cvba1187 Probable thiol-disulfide isomerase/thioredoxin TTH 96.85
d1e2ya_167 Tryparedoxin peroxidase (thioredoxin peroxidase ho 96.8
d2bmxa1169 Alkyl hydroperoxide reductase AhpC {Mycobacterium 96.76
d1wp0a1160 Thioredoxin-like protein Sco1 (YpmQ), soluble doma 96.74
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 96.74
d1wgna_63 Ubiquitin-associated protein 1, UBAP1 {Human (Homo 96.65
d1oqya141 DNA repair protein Hhr23a {Human (Homo sapiens) [T 96.61
d1we0a1166 Alkyl hydroperoxide reductase AhpC {Amphibacillus 96.48
d1uula_194 Tryparedoxin peroxidase (thioredoxin peroxidase ho 96.46
d2b7ka1169 Thioredoxin-like protein Sco1 (YpmQ), soluble doma 96.36
d1wjia_63 Tudor domain containing protein 3, TDRD3 {Human (H 96.36
d1zyea1158 Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ 96.31
d1g7ea_122 Endoplasmic reticulum protein ERP29, N-terminal do 96.28
d1xzoa1172 Thioredoxin-like protein Sco1 (YpmQ), soluble doma 95.72
d1n8ja_186 Alkyl hydroperoxide reductase AhpC {Salmonella typ 95.7
d2a4va1156 Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c 95.65
d1xb2b156 Elongation factor Ts (EF-Ts), N-terminal domain {C 95.64
d1wj7a191 Ubiquitin-associated protein 2-like Ubap2l {Mouse 95.62
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 95.55
d1wjka_100 Thioredoxin-like structure containing protein C330 95.5
d1t3ba1150 Disulfide bond isomerase, DsbC, C-terminal domain 95.46
d2zcta1237 Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} 95.41
d1vdla_80 Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (M 95.03
d1aipc152 Elongation factor Ts (EF-Ts), N-terminal domain {T 94.99
d1zofa1170 Thioredoxin reductase TsaA {Helicobacter pylori [T 94.92
d2bwba144 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 94.43
d1efub354 Elongation factor Ts (EF-Ts), N-terminal domain {E 94.05
d1eeja1156 Disulfide bond isomerase, DsbC, C-terminal domain 93.93
d2dnaa150 Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus 93.85
d2h01a1170 Thioredoxin peroxidase 2 (thioredoxin peroxidase B 93.61
d1z96a138 UBA-domain protein mud1 {Schizosaccharomyces pombe 93.48
d1z6na1166 Hypothetical protein PA1234 {Pseudomonas aeruginos 93.19
d1qmva_197 Thioredoxin peroxidase 2 (thioredoxin peroxidase B 92.87
d1prxa_220 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 92.27
d1v58a1169 Thiol:disulfide interchange protein DsbG, C-termin 92.19
d2f8aa1184 Glutathione peroxidase {Human (Homo sapiens) [TaxI 92.08
d1veja161 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 91.52
d1a8la1119 Protein disulfide isomerase, PDI {Archaeon Pyrococ 91.19
d1xvqa_166 Thiol peroxidase Tpx {Mycobacterium tuberculosis [ 91.1
d1whca_64 UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta 91.07
d1q98a_164 Thiol peroxidase Tpx {Haemophilus influenzae [TaxI 90.75
d1qxha_164 Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 90.17
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 89.99
d1wgla_59 Toll-interacting protein {Human (Homo sapiens) [Ta 89.91
d1psqa_163 Probable thiol peroxidase PsaD {Streptococcus pneu 89.89
d1xvwa1153 Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri 89.75
d1olma175 Supernatant protein factor (SPF), N-terminal domai 89.25
d1xcca_219 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax 89.23
d2cpwa151 Cbl-interacting protein p70, STS1 {Human (Homo sap 89.2
d1mn3a_54 Vacuolar protein sorting-associated protein vps9 { 85.05
d1veka_84 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 84.85
d3e46a142 Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal 83.08
d2crna151 Suppressor of T-cell receptor signaling 2 (STS-2) 82.76
d2djka1133 Protein disulfide isomerase, PDI {Fungi (Humicola 81.13
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=256.71  Aligned_cols=134  Identities=40%  Similarity=0.788  Sum_probs=127.0

Q ss_pred             CCcchHHHHhhhhCCCccccccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCC
Q 021955          101 TTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD  180 (305)
Q Consensus       101 ~~~~~~~~la~lFrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~d  180 (305)
                      +...+..+||.||+||++|+|.|+|++|++.||+++|||||||+++||++|+.|+|+||+|+.|++++++|||+|+++.+
T Consensus         7 ~~~~~~~~~a~~~~pp~~i~~~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~   86 (147)
T d2dlxa1           7 GIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHD   86 (147)
T ss_dssp             CCCCCCCCCCCTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESS
T ss_pred             CcccchHHHHHhhCCCccccccCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeeccc
Confidence            35566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCC
Q 021955          181 TSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR  235 (305)
Q Consensus       181 s~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~~~~  235 (305)
                      +++|..|++.|++..||+|+||||+||+.++.|.| +++++|++.|++||++++.
T Consensus        87 ~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~~~~~-~~~~~fl~~L~~fl~~~~~  140 (147)
T d2dlxa1          87 SEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHGQ  140 (147)
T ss_dssp             SHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTCS
T ss_pred             chhhhhhhhheecCceeEEEEEeCCCCeEecccCC-CCHHHHHHHHHHHHhhCCC
Confidence            99999999999999999999999999999988865 7999999999999997643
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Back     information, alignment and structure
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Back     information, alignment and structure
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Back     information, alignment and structure
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Back     information, alignment and structure
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Back     information, alignment and structure
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Back     information, alignment and structure
>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Back     information, alignment and structure
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Back     information, alignment and structure
>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Back     information, alignment and structure
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Back     information, alignment and structure
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]} Back     information, alignment and structure
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Back     information, alignment and structure
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Back     information, alignment and structure