Citrus Sinensis ID: 021962
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 305 | ||||||
| 449494299 | 300 | PREDICTED: methylsterol monooxygenase 1- | 0.983 | 1.0 | 0.777 | 1e-142 | |
| 357477023 | 303 | Sterol-4-methyl-oxidase [Medicago trunca | 0.983 | 0.990 | 0.762 | 1e-139 | |
| 356514156 | 297 | PREDICTED: putative methylsterol monooxy | 0.970 | 0.996 | 0.787 | 1e-138 | |
| 388498022 | 303 | unknown [Medicago truncatula] | 0.980 | 0.986 | 0.756 | 1e-138 | |
| 224074721 | 285 | predicted protein [Populus trichocarpa] | 0.918 | 0.982 | 0.821 | 1e-137 | |
| 21593461 | 299 | putative C-4 sterol methyl oxidase [Arab | 0.957 | 0.976 | 0.75 | 1e-135 | |
| 224124928 | 279 | predicted protein [Populus trichocarpa] | 0.914 | 1.0 | 0.809 | 1e-135 | |
| 18416004 | 299 | sterol C4-methyl oxidase 1-2 [Arabidopsi | 0.957 | 0.976 | 0.753 | 1e-135 | |
| 27446631 | 299 | putative sterol 4-alpha-methyl-oxidase [ | 0.957 | 0.976 | 0.75 | 1e-134 | |
| 21593012 | 298 | putative C-4 sterol methyl oxidase [Arab | 0.957 | 0.979 | 0.739 | 1e-133 |
| >gi|449494299|ref|XP_004159506.1| PREDICTED: methylsterol monooxygenase 1-2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 237/305 (77%), Positives = 270/305 (88%), Gaps = 5/305 (1%)
Query: 1 MLPYATIEDAAAALGRNLTFAETLWYNYSANKSDYFLYCHNILFLFLVFSVAPLPFVVIE 60
MLP+ ++ A A+LGRNLTF ETLW+NYS +KSDYFL+CHNILFLFL+FS PLP + +E
Sbjct: 1 MLPFHSLSAAQASLGRNLTFFETLWFNYSNDKSDYFLFCHNILFLFLIFSFIPLPLIFLE 60
Query: 61 SLRSDSFDKYKIQPKVRLSFSEMVRCYKDVMRMFFLVVGPLQLVSFPSVQMVGIRTGLPL 120
L + KYKIQPKVRL F+E+ RCYKDVMRMFFLVVGPLQLVSFPS++M+GIRTGLPL
Sbjct: 61 LLHATGIHKYKIQPKVRLPFNEIFRCYKDVMRMFFLVVGPLQLVSFPSIKMIGIRTGLPL 120
Query: 121 PSGWEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPIGFAAPYAHWAEI 180
PSG+EI++QLVVYFMVEDYTNYWIHRFLHCKWGYEKIH VHHEYTAPIGFAAPYAHWAE+
Sbjct: 121 PSGFEIVSQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHCVHHEYTAPIGFAAPYAHWAEV 180
Query: 181 LILGIPSFLGPAMAPGHMITFWLWIALRQIEAIDTHSGFSFCRYDFPWGFTKYIPFYGGA 240
LILGIPSFLGPAM PGHMITFWLWIALRQIEAIDTHSG YDFPW TK+IPFYGGA
Sbjct: 181 LILGIPSFLGPAMVPGHMITFWLWIALRQIEAIDTHSG-----YDFPWSLTKFIPFYGGA 235
Query: 241 DYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQNGGSYQ 300
D+HDYHHYVG QSHSNFASVFTYCD++YGTDKGYRYQKK+L+K++EE++ S E + Q
Sbjct: 236 DHHDYHHYVGGQSHSNFASVFTYCDYIYGTDKGYRYQKKILQKLKEEVKNSEESYYNTAQ 295
Query: 301 NLKSE 305
N+KS+
Sbjct: 296 NVKSD 300
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357477023|ref|XP_003608797.1| Sterol-4-methyl-oxidase [Medicago truncatula] gi|355509852|gb|AES90994.1| Sterol-4-methyl-oxidase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356514156|ref|XP_003525772.1| PREDICTED: putative methylsterol monooxygenase DDB_G0269788-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|388498022|gb|AFK37077.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|224074721|ref|XP_002304440.1| predicted protein [Populus trichocarpa] gi|222841872|gb|EEE79419.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|21593461|gb|AAM65428.1| putative C-4 sterol methyl oxidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|224124928|ref|XP_002329848.1| predicted protein [Populus trichocarpa] gi|222871085|gb|EEF08216.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|18416004|ref|NP_567670.1| sterol C4-methyl oxidase 1-2 [Arabidopsis thaliana] gi|122178087|sp|Q1EC69.1|SMO12_ARATH RecName: Full=Methylsterol monooxygenase 1-2; AltName: Full=Sterol 4-alpha-methyl-oxidase 1-2; Short=AtSMO1-2 gi|108385258|gb|ABF85767.1| At4g22756 [Arabidopsis thaliana] gi|110738551|dbj|BAF01201.1| hypothetical protein [Arabidopsis thaliana] gi|332659253|gb|AEE84653.1| sterol C4-methyl oxidase 1-2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|27446631|gb|AAK61361.1| putative sterol 4-alpha-methyl-oxidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|21593012|gb|AAM64961.1| putative C-4 sterol methyl oxidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 305 | ||||||
| TAIR|locus:505006515 | 299 | SMO1-2 "AT4G22756" [Arabidopsi | 0.957 | 0.976 | 0.73 | 1.7e-123 | |
| TAIR|locus:2118121 | 298 | SMO1-1 "AT4G12110" [Arabidopsi | 0.957 | 0.979 | 0.712 | 7.4e-121 | |
| TAIR|locus:505006514 | 291 | SMO1-3 "AT4G22753" [Arabidopsi | 0.918 | 0.962 | 0.680 | 2.6e-111 | |
| TAIR|locus:2024982 | 266 | SMO2-1 "sterol 4-alpha-methyl- | 0.832 | 0.954 | 0.399 | 1.5e-51 | |
| TAIR|locus:2043132 | 272 | SMO2-2 "STEROL+4-ALPHA-METHYL- | 0.829 | 0.930 | 0.362 | 2.1e-45 | |
| DICTYBASE|DDB_G0270946 | 267 | DDB_G0270946 "C-4 methyl stero | 0.849 | 0.970 | 0.340 | 1.4e-39 | |
| DICTYBASE|DDB_G0269788 | 270 | DDB_G0269788 "C-4 methyl stero | 0.836 | 0.944 | 0.322 | 6.1e-39 | |
| ASPGD|ASPL0000046123 | 291 | AN8907 [Emericella nidulans (t | 0.809 | 0.848 | 0.364 | 5.5e-38 | |
| DICTYBASE|DDB_G0279611 | 281 | DDB_G0279611 "sterol desaturas | 0.718 | 0.779 | 0.361 | 1.1e-37 | |
| CGD|CAL0003665 | 321 | ERG251 [Candida albicans (taxi | 0.845 | 0.803 | 0.338 | 3.5e-36 |
| TAIR|locus:505006515 SMO1-2 "AT4G22756" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
Identities = 219/300 (73%), Positives = 257/300 (85%)
Query: 1 MLPYATIEDAAAALGRNLTFAETLWYNYSANKSDYFLYCHNILFLFLVFSVAPLPFVVIE 60
M+PYATIE+A+ AL RNLT+ ETLW++YSA KSDY+LYCHNILFLFL+FS+ PLP V IE
Sbjct: 1 MIPYATIEEASIALSRNLTWLETLWFDYSATKSDYYLYCHNILFLFLIFSLVPLPLVFIE 60
Query: 61 SLRS--DSFDKYKIQPKVRLSFSEMVRCYKDVMRMFFLVVGPLQLVSFPSVQMVGIRTGL 118
S +S D F++YKIQPKV+ SFS M +CYKDVM+MF LVVGPLQLVS+PS+QM+ IR+GL
Sbjct: 61 SSQSTSDLFNRYKIQPKVKNSFSSMFKCYKDVMKMFILVVGPLQLVSYPSIQMIEIRSGL 120
Query: 119 PLPSGWEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPIGFAAPYAHWA 178
PLPS EI+AQLVVYF+VEDYTNYW+HRF HCKWGYEK H +HHEYTAPIG+AAPYAHWA
Sbjct: 121 PLPSCMEIVAQLVVYFLVEDYTNYWVHRFFHCKWGYEKFHHIHHEYTAPIGYAAPYAHWA 180
Query: 179 EILILGIPSFLGPAMAPGHMITFWLWIALRQIEAIDTHSGFSFCRYDFPWGFTKYIPFYG 238
E+L+LGIP+FLGPA+APGHMITFWLWIALRQIEAI+THSG YDFPW TKYIPFYG
Sbjct: 181 EVLLLGIPTFLGPAIAPGHMITFWLWIALRQIEAIETHSG-----YDFPWSLTKYIPFYG 235
Query: 239 GAXXXXXXXXVGEQSHSNFASVFTYCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQ-NGG 297
GA VG QS SNFASVFTYCD++YGTDKGYR+QKKLL++M+E+ + S + NGG
Sbjct: 236 GAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLQQMKEKSKKSNKLVNGG 295
|
|
| TAIR|locus:2118121 SMO1-1 "AT4G12110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:505006514 SMO1-3 "AT4G22753" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2024982 SMO2-1 "sterol 4-alpha-methyl-oxidase 2-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2043132 SMO2-2 "STEROL+4-ALPHA-METHYL-OXIDASE+2-2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0270946 DDB_G0270946 "C-4 methyl sterol oxidase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0269788 DDB_G0269788 "C-4 methyl sterol oxidase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000046123 AN8907 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0279611 DDB_G0279611 "sterol desaturase family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0003665 ERG251 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 305 | |||
| COG3000 | 271 | COG3000, ERG3, Sterol desaturase [Lipid metabolism | 4e-19 | |
| pfam04116 | 114 | pfam04116, FA_hydroxylase, Fatty acid hydroxylase | 5e-18 | |
| PLN02869 | 620 | PLN02869, PLN02869, fatty aldehyde decarbonylase | 1e-04 |
| >gnl|CDD|225546 COG3000, ERG3, Sterol desaturase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 4e-19
Identities = 38/151 (25%), Positives = 52/151 (34%), Gaps = 6/151 (3%)
Query: 120 LPSGWEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPIGFAAPYAHWAE 179
P QL++ F+ D YW HR LH H+VHH P A H E
Sbjct: 89 APGPLPFALQLLLAFLFLDLGYYWAHRLLHRVPLLWAFHKVHHSSEVPDPLTALRFHPLE 148
Query: 180 ILILGIPSFLGPAMAPGHMITFWLWIALRQIEAIDTHSGFSFCRYDFPWGFTKYIPFYGG 239
IL+L L + + L A+ HS D P +
Sbjct: 149 ILLLAFLGLLPLLLLGLSPVAVALLFIFLLFWAVLIHSN-----LDLPLPLGWLRYVFNT 203
Query: 240 ADYHDYHHYVGEQSHSNFASVFTYCDFLYGT 270
+H HH + N+ T+ D L+GT
Sbjct: 204 PRHHRLHHSK-DPYDKNYGVTLTFWDRLFGT 233
|
Length = 271 |
| >gnl|CDD|217907 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|166510 PLN02869, PLN02869, fatty aldehyde decarbonylase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 305 | |||
| KOG0873 | 283 | consensus C-4 sterol methyl oxidase [Lipid transpo | 100.0 | |
| COG3000 | 271 | ERG3 Sterol desaturase [Lipid metabolism] | 100.0 | |
| KOG0874 | 287 | consensus Sphingolipid hydroxylase [Lipid transpor | 99.98 | |
| KOG0872 | 312 | consensus Sterol C5 desaturase [Lipid transport an | 99.96 | |
| PLN02869 | 620 | fatty aldehyde decarbonylase | 99.96 | |
| PF04116 | 114 | FA_hydroxylase: Fatty acid hydroxylase superfamily | 99.78 | |
| PLN02434 | 237 | fatty acid hydroxylase | 99.24 | |
| KOG0539 | 240 | consensus Sphingolipid fatty acid hydroxylase [Lip | 98.31 | |
| PLN02601 | 303 | beta-carotene hydroxylase | 97.98 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 97.52 | |
| PF10520 | 178 | Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme | 94.13 | |
| cd03514 | 207 | CrtR_beta-carotene-hydroxylase Beta-carotene hydro | 85.11 |
| >KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-60 Score=427.53 Aligned_cols=276 Identities=47% Similarity=0.850 Sum_probs=257.5
Q ss_pred HhcCCchHHHHHHHHhhhcCC-CchHHH-HH-HHHHHHHHHhhhhHHHHHHhhc-CCcccccccCCCCCCCHHHHHHHHH
Q 021962 13 ALGRNLTFAETLWYNYSANKS-DYFLYC-HN-ILFLFLVFSVAPLPFVVIESLR-SDSFDKYKIQPKVRLSFSEMVRCYK 88 (305)
Q Consensus 13 ~~~~~~~~~~~~W~~~~~~~~-~~~~~~-~~-~~~~~~~y~~~~~~f~~~d~~~-p~~~~k~Kiq~~~~~~~~~~~~~~~ 88 (305)
|..+..+|+|.+|..+.++++ +.++.. ++ +++..++||+.|++|+++|... |++++|||||+++++++++.++|++
T Consensus 3 ~~~p~~nflq~~W~~l~~~f~~d~~l~~~~~~~~~~~~~y~l~~lpf~~iD~t~~~~~~~rYKIQp~k~~s~~~~~kc~k 82 (283)
T KOG0873|consen 3 ALHPLQNFLQPLWDYLYNTFSGDFLLLCVGGPFIVHELVYWLFCLPFIFIDVTNRPPFLRRYKIQPKKNPSLSKQLKCLK 82 (283)
T ss_pred CcchhHHHHHHHHHHHHhhCCCceEEEeechhHHHHHHHHHHhcchheEeecccCcchhhhhccCCCCCCCHHHHHHHHH
Confidence 456677899999999999887 666664 33 5666699999999999999985 9999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhhccccCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhcCcchhhhhhhhccCCCCCCC
Q 021962 89 DVMRMFFLVVGPLQLVSFPSVQMVGIRTGLPLPSGWEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPI 168 (305)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~D~~~Y~~HRllH~~~ly~~~H~~HH~~~~p~ 168 (305)
.++.|++++..|++++.++..++.|++.+.|+|++.+++.|+++++++.|+++||.||++|++++||.+||+||++++|.
T Consensus 83 ~vl~n~~~v~~p~~~~~y~~~~~~~~~~~~plPt~~~~l~~l~i~~liEd~~fY~~HRL~H~~~~Yk~iHKvHHe~taPf 162 (283)
T KOG0873|consen 83 VVLLNHFLVVLPLTLVSYPFVEWFGLPSGAPLPSWKEMLAQLVVFFLIEDIGFYWSHRLFHHKWLYKYIHKVHHEYTAPF 162 (283)
T ss_pred HHHHHHHHHHhhHHHHhHHHHHHhCCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhhhcccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccChHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhCCCCcccccCCCcccccccccChhHHhhhcc
Q 021962 169 GFAAPYAHWAEILILGIPSFLGPAMAPGHMITFWLWIALRQIEAIDTHSGFSFCRYDFPWGFTKYIPFYGGADYHDYHHY 248 (305)
Q Consensus 169 ~~~a~~~hp~E~ll~~~p~~l~~~l~~~h~~~~~~~~~~~~~~~~~~Hsg~~~~~~~~p~~~~~~~~~~~~~~~H~~HH~ 248 (305)
+.+|.|+||+|.++.+++.+.++++++.|+.+.++|++++++.++..||| ||+||.+.+++|+.+++++||+||.
T Consensus 163 ~~sa~YaHp~E~~~lg~~~~~~p~~~~~H~~t~wiw~~l~i~~t~~~HsG-----Y~fPwsl~~~~pfy~ga~~HD~HH~ 237 (283)
T KOG0873|consen 163 GLSAEYAHPLEHLFLGLGTVMGPALLCGHVITLWIWIALRILETVESHSG-----YDFPWSLSKLIPFYGGAEHHDYHHL 237 (283)
T ss_pred hHhhhhcCHHHHHHcCChhhhhhHHhhhHHHHHHHHHHHHHHHHhhccCC-----CCCCccccccCcccCCCcccchhhh
Confidence 99999999999999998877888888889999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCCcccCCCchhHHhhcCCCccchhHHHHHHHHHHHHhcCCCCCC
Q 021962 249 VGEQSHSNFASVFTYCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQNG 296 (305)
Q Consensus 249 ~~~~~~~NYg~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (305)
. +.+||.+.|+.|||++||++.+++.|+..|+++++.++++.+..
T Consensus 238 ~---f~~n~~~~f~~~D~i~GTd~~~~~~k~~~~~~~~~~~~~~~~~~ 282 (283)
T KOG0873|consen 238 V---FIGNFASVFGYLDRIHGTDSTYRALKELKEAIKKKSEKPIKEDE 282 (283)
T ss_pred h---ccccccchhHHHHHHhccCccHhhhhhHHHHHHHhccCchhhcC
Confidence 5 58999999999999999999999999999999999999876643
|
|
| >COG3000 ERG3 Sterol desaturase [Lipid metabolism] | Back alignment and domain information |
|---|
| >KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02869 fatty aldehyde decarbonylase | Back alignment and domain information |
|---|
| >PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases | Back alignment and domain information |
|---|
| >PLN02434 fatty acid hydroxylase | Back alignment and domain information |
|---|
| >KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02601 beta-carotene hydroxylase | Back alignment and domain information |
|---|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1 | Back alignment and domain information |
|---|
| >cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 305 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 3e-05
Identities = 47/303 (15%), Positives = 84/303 (27%), Gaps = 77/303 (25%)
Query: 18 LTFAETLWYNYSANKSDYFLYCHNILFLFL---VFSVAPLPFVVI-ESLRS--DSFDKYK 71
LT E L + L V + P +I ES+R ++D +K
Sbjct: 298 LTPDEVK---------SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 72 ----------IQPKVR-LSFSEMVRCYKDVMRMFFLVVGPLQLVSFPSVQMVGIRTGLPL 120
I+ + L +E + + L V FP +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDR------LSV-------FPP--------SAHI 387
Query: 121 PSG-WEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHH---EYTAPIGFAAPYAH 176
P+ ++ V+ V N L K E + E + H
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE-NEYALH 446
Query: 177 WAEILI--LGIP-SFLGPAMAPGHMITFWLW-IA--LRQIEAIDTHSGFSFCRYDFPW-- 228
++ IP +F + P ++ ++ I L+ IE + + F DF +
Sbjct: 447 --RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 229 ------GFTKYIPFYGGADYHD---YHHYVGEQSHSNFASVFTYCDFLYGTDKGYRYQKK 279
Y Y+ + V DFL + ++
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL------PKIEEN 558
Query: 280 LLR 282
L+
Sbjct: 559 LIC 561
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00