Citrus Sinensis ID: 021965

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
MDQYEYQGQRREMKHKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRDLLSQDGFHWNPNTKMIECDNDDLWKRYIAAHPDARGFRGKQIEMYDELKIVCGNYQAPSRWAKTKDGSHPTEIRNCEDDSASFLSPSSEEASDTDGTESYTGSPEYMPDGSQDPPLVPPLRQLPKRPRGSDALQDAMLAVASSIRKLADAMERSKTAINASELLQAVMEIDGLEEAKQMYAFEYLNADPIKARAFMTYDPRMRKIYLFRQFWWWK
cccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEccHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHcccc
cccccccccccccccccccEEEcHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccHHHHHHHHHHcccHHHHHccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHEEEEccccHHHHHHHHHHHHHcc
mdqyeyqgqrremkhkGRNVVWSIAMDKCLIEALAIQARTgnkidkcfnenAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRDLLsqdgfhwnpntkmiecdnDDLWKRYIaahpdargfrgkqieMYDELKIVcgnyqapsrwaktkdgshpteirnceddsasflspsseeasdtdgtesytgspeympdgsqdpplvpplrqlpkrprgsdaLQDAMLAVASSIRKLADAMERSKTAINASELLQAVMEIDGLEEAKQMYAFEYlnadpikarafmtydprmRKIYLFRQFWWWK
mdqyeyqgqrremkhkgrnVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNtrfnlnlnnqkvvnRLKTIKKRYKVMRDLLsqdgfhwnpntKMIECDNDDLWKRYIAAHPDARGFRGKQIEMYDELKIVCGNYQAPSRWAKTKDGSHPTEIRNCeddsasflspsseeasdtdgTESYTGSPEYMPDGSQDPPLVPPLRQLPKRPRGSDALQDAMLAVASSIRKLADAMERSKTAINASELLQAVMEIDGLEEAKQMYAFEYLNADPIKARAFMTYDPRMRKIYLFRQFWWWK
MDQYEYQGQRREMKHKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRDLLSQDGFHWNPNTKMIECDNDDLWKRYIAAHPDARGFRGKQIEMYDELKIVCGNYQAPSRWAKTKDGSHPTEIRNCEDDSASFLSPSSEEASDTDGTESYTGSPEYMPDGSQDPPLVPPLRQLPKRPRGSDALQDAMLAVASSIRKLADAMERSKTAINASELLQAVMEIDGLEEAKQMYAFEYLNADPIKARAFMTYDPRMRKIYLFRQFWWWK
*****************RNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRDLLSQDGFHWNPNTKMIECDNDDLWKRYIAAHPDARGFRGKQIEMYDELKIVCGNYQAPSR*************************************************************************************************INASELLQAVMEIDGLEEAKQMYAFEYLNADPIKARAFMTYDPRMRKIYLFRQFWWW*
***********************IAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRDLLSQDGFHWNPNTKMIECDNDDLWKRYIAAHPDARGFRGKQIEMYDELKIVCGNYQAPSRWAKTKDGSHPTEIRNCEDDSASFLSPSSEEASDTDGTESYTGSPE*****************************************************NASELLQAVMEIDGLEEAKQMYAFEYLNADPIKARAFMTYDPRMRKIYLFRQFWWWK
**************HKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRDLLSQDGFHWNPNTKMIECDNDDLWKRYIAAHPDARGFRGKQIEMYDELKIVCGNYQAPSR**********TEIRNCE*************************SPEYMPDGSQDPPLVPPLRQLPKRPRGSDALQDAMLAVASSIRKLADAMERSKTAINASELLQAVMEIDGLEEAKQMYAFEYLNADPIKARAFMTYDPRMRKIYLFRQFWWWK
****************GRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRDLLSQDGFHWNPNTKMIECDNDDLWKRYIAAHPDARGFRGKQIEMYDELKIVCGNYQ*************************************************************************SDALQDAMLAVASSIRKLADAMERSKTAINASELLQAVMEIDGLEEAKQMYAFEYLNADPIKARAFMTYDPRMRKIYLFRQFWWWK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDQYEYQGQRREMKHKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRDLLSQDGFHWNPNTKMIECDNDDLWKRYIAAHPDARGFRGKQIEMYDELKIVCGNYQAPSRWAKTKDGSHPTEIRNCEDDSASFLSPSSEEASDTDGTESYTGSPEYMPDGSQDPPLVPPLRQLPKRPRGSDALQDAMLAVASSIRKLADAMERSKTAINASELLQAVMEIDGLEEAKQMYAFEYLNADPIKARAFMTYDPRMRKIYLFRQFWWWK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query304 2.2.26 [Sep-21-2011]
O82368308 Uncharacterized protein A no no 0.756 0.746 0.240 2e-05
>sp|O82368|Y2988_ARATH Uncharacterized protein At2g29880 OS=Arabidopsis thaliana GN=At2g29880 PE=2 SV=1 Back     alignment and function desciption
 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 24/254 (9%)

Query: 1   MDQYEYQGQRREMKHKGRNVVWS----IAMDKCLIEALAIQARTGN-KIDKCFNENAYTA 55
           M+  +  G+  + K KG  + WS      +   L++A+    R  N  I K   E     
Sbjct: 1   MESGDQAGETSKKKKKGPYMSWSDQECYELTAILVDAIKRGWRDKNGTISKTTVERKILP 60

Query: 56  ACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRDLL-SQDGFHWNPNTKMIECDNDDLWK 114
               +N +F  N      ++R+K++KK Y V   L     GF W+P TK      DD+W 
Sbjct: 61  L---LNKKFKCNKTYTNYLSRMKSMKKEYSVYAALFWFSSGFGWDPITKQFTAP-DDVWA 116

Query: 115 RYIAAHPDARGFRGKQIEMYDELKIVCGNYQAPSRWAKTKDGSHPTEIRNCEDDSASFLS 174
            Y+  HP+    R    E +++L+++  +  A    A    G    E    EDD  +  +
Sbjct: 117 AYLMGHPNHHHMRTSTFEDFEDLQLIFESAIAKGNNAFGLGGDSNAETFEEEDDLQAGDN 176

Query: 175 PSSEEASDTDGTESYTGSPEYMPDGSQDPPLVPPLRQLPKRPRGSDALQDAMLAVASSIR 234
            +  E +D +  E+              P    P R+  K  R  D   D++    SS +
Sbjct: 177 VNHMEINDDEVNETL-------------PKEKLPTRKRSKTNRNGDR-SDSINHGESSEK 222

Query: 235 KLADAMERSKTAIN 248
            L++ +      IN
Sbjct: 223 VLSEMIGVGTNIIN 236

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
225449804306 PREDICTED: uncharacterized protein LOC10 1.0 0.993 0.830 1e-155
255569197302 conserved hypothetical protein [Ricinus 0.993 1.0 0.855 1e-155
359494942294 PREDICTED: uncharacterized protein LOC10 0.960 0.993 0.843 1e-150
224075896300 predicted protein [Populus trichocarpa] 0.986 1.0 0.825 1e-147
356517702306 PREDICTED: uncharacterized protein LOC10 1.0 0.993 0.771 1e-143
449446329310 PREDICTED: uncharacterized protein LOC10 1.0 0.980 0.774 1e-141
298205127279 unnamed protein product [Vitis vinifera] 0.911 0.992 0.764 1e-137
357515477310 hypothetical protein MTR_8g041580 [Medic 0.996 0.977 0.739 1e-136
15235404307 uncharacterized protein [Arabidopsis tha 1.0 0.990 0.680 1e-118
79324979322 uncharacterized protein [Arabidopsis tha 1.0 0.944 0.680 1e-118
>gi|225449804|ref|XP_002275183.1| PREDICTED: uncharacterized protein LOC100264359 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 254/306 (83%), Positives = 285/306 (93%), Gaps = 2/306 (0%)

Query: 1   MDQYEYQGQRREMKHKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAV 60
           MD +++Q Q+REMKHKGRNVVWS+AMDKCLIEAL IQA+ GNKIDKCFNENAYTAACIAV
Sbjct: 1   MDHHDFQAQKREMKHKGRNVVWSMAMDKCLIEALVIQAKNGNKIDKCFNENAYTAACIAV 60

Query: 61  NTRFNLNLNNQKVVNRLKTIKKRYKVMRDLLSQDGFHWNPNTKMIECDNDDLWKRYIAAH 120
           N+RFNLNLNNQKVVNRLKTIKKRYK+MRD+L+Q+GF WNPNTKMIECDNDDLWKRYIAAH
Sbjct: 61  NSRFNLNLNNQKVVNRLKTIKKRYKIMRDMLTQNGFTWNPNTKMIECDNDDLWKRYIAAH 120

Query: 121 PDARGFRGKQIEMYDELKIVCGNYQAPSRWAKTKDGSHPTEIRNCEDDSASFLSPSSEEA 180
           PDARGFRGKQI+MYDELKIVCGNYQAPSRWA+  DGS PT I+NCEDDSAS+LSPSSE+ 
Sbjct: 121 PDARGFRGKQIDMYDELKIVCGNYQAPSRWARMTDGSQPTAIKNCEDDSASYLSPSSEDL 180

Query: 181 SDTDGTESYTGSPEY--MPDGSQDPPLVPPLRQLPKRPRGSDALQDAMLAVASSIRKLAD 238
           S+TDGTESYTG  EY  MPDGS DPPL+ PL Q+PKR RGS+A+QDAMLAVA+SIR+LAD
Sbjct: 181 SETDGTESYTGQQEYAQMPDGSGDPPLIQPLSQIPKRARGSEAIQDAMLAVATSIRRLAD 240

Query: 239 AMERSKTAINASELLQAVMEIDGLEEAKQMYAFEYLNADPIKARAFMTYDPRMRKIYLFR 298
           A+ER K ++++SELLQAVMEIDGLEEA+QMYAFEYLNADPIKARAFMTY+ RMRKI+LFR
Sbjct: 241 ALERRKNSVDSSELLQAVMEIDGLEEARQMYAFEYLNADPIKARAFMTYNVRMRKIFLFR 300

Query: 299 QFWWWK 304
           QFWWWK
Sbjct: 301 QFWWWK 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255569197|ref|XP_002525567.1| conserved hypothetical protein [Ricinus communis] gi|223535146|gb|EEF36826.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359494942|ref|XP_003634877.1| PREDICTED: uncharacterized protein LOC100264359 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224075896|ref|XP_002304818.1| predicted protein [Populus trichocarpa] gi|222842250|gb|EEE79797.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356517702|ref|XP_003527525.1| PREDICTED: uncharacterized protein LOC100810618 [Glycine max] Back     alignment and taxonomy information
>gi|449446329|ref|XP_004140924.1| PREDICTED: uncharacterized protein LOC101213668 [Cucumis sativus] gi|449520629|ref|XP_004167336.1| PREDICTED: uncharacterized protein LOC101230001 [Cucumis sativus] Back     alignment and taxonomy information
>gi|298205127|emb|CBI40648.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357515477|ref|XP_003628027.1| hypothetical protein MTR_8g041580 [Medicago truncatula] gi|355522049|gb|AET02503.1| hypothetical protein MTR_8g041580 [Medicago truncatula] Back     alignment and taxonomy information
>gi|15235404|ref|NP_192164.1| uncharacterized protein [Arabidopsis thaliana] gi|3892052|gb|AAC78262.1| predicted protein of unknown function [Arabidopsis thaliana] gi|7269015|emb|CAB80748.1| predicted protein of unknown function [Arabidopsis thaliana] gi|17529242|gb|AAL38848.1| unknown protein [Arabidopsis thaliana] gi|20465957|gb|AAM20164.1| unknown protein [Arabidopsis thaliana] gi|332656789|gb|AEE82189.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79324979|ref|NP_001031574.1| uncharacterized protein [Arabidopsis thaliana] gi|332656790|gb|AEE82190.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
TAIR|locus:2132363322 AT4G02550 "AT4G02550" [Arabido 1.0 0.944 0.684 1e-114
TAIR|locus:2137834439 AT4G02210 "AT4G02210" [Arabido 0.733 0.507 0.276 7.2e-20
TAIR|locus:2047374 797 AT2G24960 "AT2G24960" [Arabido 0.440 0.168 0.316 2.7e-13
TAIR|locus:2181281303 AT5G27260 "AT5G27260" [Arabido 0.815 0.818 0.244 1.5e-12
TAIR|locus:2202466222 AT1G30140 "AT1G30140" [Arabido 0.440 0.603 0.292 3.7e-09
TAIR|locus:2052070308 AT2G29880 "AT2G29880" [Arabido 0.605 0.597 0.252 1.1e-07
UNIPROTKB|G4NI48 438 MGG_09350 "Uncharacterized pro 0.608 0.422 0.209 1.3e-07
TAIR|locus:2166464449 AT5G05800 "AT5G05800" [Arabido 0.782 0.530 0.199 2e-07
TAIR|locus:2074673460 AT3G11290 "AT3G11290" [Arabido 0.799 0.528 0.191 8.2e-05
TAIR|locus:2132363 AT4G02550 "AT4G02550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
 Identities = 210/307 (68%), Positives = 253/307 (82%)

Query:     1 MDQYEYQGQRREMKHKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAV 60
             MDQY    +R+EMKHKGRNV+WS+ MDKCLIEALA+QA+ GNK+DKCFN+ AYTAAC+AV
Sbjct:    16 MDQYGIPVERKEMKHKGRNVIWSVGMDKCLIEALAVQAKNGNKVDKCFNDKAYTAACVAV 75

Query:    61 NTRFNLNLNNQKVVNRLKTIKKRYKVMRDLLSQDGFHWNPNTKMIECDNDDLWKRYIAAH 120
             NTRFNLNL +QK +NRLKTIKKRY+VMRD+LS+DGF WN +TKMI+C++D+LW+RYIA +
Sbjct:    76 NTRFNLNLTSQKAINRLKTIKKRYRVMRDILSRDGFWWNSSTKMIDCESDELWRRYIAVN 135

Query:   121 PDARGFRGKQIEMYDELKIVCGNYQAPSRWAKTKDGS--HPTEIRNCEDDSASFLSPSSE 178
             PDA+ FRGKQIEMY+EL+ VCG+YQ P ++ K K  S  H  +++  E+DS SF   SSE
Sbjct:   136 PDAKAFRGKQIEMYEELRTVCGDYQTPGKYNKVKKESSHHLNDVKQFEEDSVSFPLGSSE 195

Query:   179 EASDTDGTESYTGSPEYMPDGSQD-PPLVPPLRQLPKRPRGSDALQDAMLAVASSIRKLA 237
             E SDTDGTESY G+ EYM + SQD PP   PLR+  KR R SD  Q+AML VASSIR+LA
Sbjct:   196 EHSDTDGTESYAGASEYMHEESQDLPPPRDPLRRPSKRSRNSDPCQEAMLVVASSIRRLA 255

Query:   238 DAMERSKTAINASELLQAVMEIDGLEEAKQMYAFEYLNADPIKARAFMTYDPRMRKIYLF 297
             DA+ +SKT IN  ELL+AVMEID LEEAKQMYAFEYLN DP+KARAFM Y+ RMRK++LF
Sbjct:   256 DAVVQSKTLINTEELLKAVMEIDELEEAKQMYAFEYLNGDPVKARAFMAYNNRMRKMFLF 315

Query:   298 RQFWWWK 304
             RQFWWWK
Sbjct:   316 RQFWWWK 322
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0031347 "regulation of defense response" evidence=IMP
GO:0010286 "heat acclimation" evidence=RCA
TAIR|locus:2137834 AT4G02210 "AT4G02210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047374 AT2G24960 "AT2G24960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181281 AT5G27260 "AT5G27260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202466 AT1G30140 "AT1G30140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052070 AT2G29880 "AT2G29880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4NI48 MGG_09350 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TAIR|locus:2166464 AT5G05800 "AT5G05800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074673 AT3G11290 "AT3G11290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
pfam1277696 pfam12776, Myb_DNA-bind_3, Myb/SANT-like DNA-bindi 1e-21
>gnl|CDD|221767 pfam12776, Myb_DNA-bind_3, Myb/SANT-like DNA-binding domain Back     alignment and domain information 
 Score = 86.9 bits (216), Expect = 1e-21
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 2/97 (2%)

Query: 21  VWSIAMDKCLIEALAIQARTGNKI-DKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKT 79
            W+  M +  ++ L  Q   GN+     F +  +       N +  L     ++ NR  T
Sbjct: 1   RWTPEMTRIFVDLLLEQVDAGNRPGQGGFTKEGWKNIVKKFNQKTGLKYTKDQLKNRWDT 60

Query: 80  IKKRYKVMRDLLSQDGFHWNPNTKMIECDNDDLWKRY 116
           +KK Y++ ++LL+  GF W+P T  +  D D+ W  Y
Sbjct: 61  LKKEYRLWKELLNASGFGWDPTTGTVVAD-DEWWDNY 96

This presumed domain appears to be related to other Myb/SANT like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins. Length = 96

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 304
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 99.95
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 98.48
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 97.36
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 96.91
PF0450498 DUF573: Protein of unknown function, DUF573; Inter 96.54
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 95.75
KOG4282345 consensus Transcription factor GT-2 and related pr 95.56
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 94.6
smart0059589 MADF subfamily of SANT domain. 94.23
PF1054585 MADF_DNA_bdg: Alcohol dehydrogenase transcription 93.6
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 93.58
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 92.21
PLN03212249 Transcription repressor MYB5; Provisional 82.22
smart0042668 TEA TEA domain. 82.0
PLN03091 459 hypothetical protein; Provisional 81.47
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information 
Probab=99.95  E-value=8e-28  Score=184.84  Aligned_cols=95  Identities=31%  Similarity=0.681  Sum_probs=92.5

Q ss_pred             CCChHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCceee
Q 021965           21 VWSIAMDKCLIEALAIQARTGNK-IDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRDLLSQDGFHWN   99 (304)
Q Consensus        21 ~Wt~~~~~~lld~l~e~~~~G~~-~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y~~~~~l~~~SG~gWD   99 (304)
                      .||+.++++||++|++++..|++ .+++|++++|+.|+.+||+++|..+|+.||+||++.||+.|+.|+.|+++||||||
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~~~sg~gwd   80 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELRNHSGFGWD   80 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCceEc
Confidence            59999999999999999999999 48999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCChHHHHHH
Q 021965          100 PNTKMIECDNDDLWKRY  116 (304)
Q Consensus       100 ~~~~~i~a~~~e~W~~~  116 (304)
                      +.++||+|+ +|+|++|
T Consensus        81 ~~~~~i~a~-~e~W~~y   96 (96)
T PF12776_consen   81 PETGMITAD-DEWWDEY   96 (96)
T ss_pred             CCCCeEECC-HHHHhhC
Confidence            999999996 9999986

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>smart00595 MADF subfamily of SANT domain Back     alignment and domain information
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>smart00426 TEA TEA domain Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 98.33
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 96.2
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 95.83
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 95.76
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 95.61
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 95.4
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 95.36
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 95.28
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 95.21
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 95.21
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 95.19
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 95.13
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 95.11
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 95.07
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 94.99
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 94.84
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 94.7
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 94.67
2cjj_A93 Radialis; plant development, DNA-binding protein, 94.59
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 93.5
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 94.44
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 94.41
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 94.31
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 93.9
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 93.79
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 93.77
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 93.43
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 93.25
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 91.78
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 90.89
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 89.07
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 88.34
2hzd_A82 Transcriptional enhancer factor TEF-1; DNA-binding 87.8
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 87.51
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 87.11
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 86.96
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 86.83
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 84.89
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 84.69
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 84.22
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 83.43
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 82.98
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 82.19
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
Probab=98.33  E-value=1.1e-06  Score=64.75  Aligned_cols=72  Identities=11%  Similarity=0.140  Sum_probs=59.6

Q ss_pred             CcCCChHHHHHHHHHHHHH---HHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 021965           19 NVVWSIAMDKCLIEALAIQ---ARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRDLLSQDG   95 (304)
Q Consensus        19 ~~~Wt~~~~~~lld~l~e~---~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y~~~~~l~~~SG   95 (304)
                      .-.||++++..||++..+.   ...|.     -+...|..|+..|.+ .|...|..||++||+.|++.|+.++.-...||
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~-----~~~~~W~~Ia~~m~~-~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG   77 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSK-----SNKHLWEQISSKMRE-KGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNG   77 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSS-----CCHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccc-----cchHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            4589999999999999873   33332     478999999999995 68899999999999999999998887655555


Q ss_pred             c
Q 021965           96 F   96 (304)
Q Consensus        96 ~   96 (304)
                      -
T Consensus        78 ~   78 (86)
T 2ebi_A           78 S   78 (86)
T ss_dssp             C
T ss_pred             C
Confidence            3
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 96.87
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 96.75
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.7
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 96.16
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 95.88
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 95.8
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 95.8
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 95.67
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 95.41
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 95.29
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 94.75
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 93.79
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 92.33
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 92.16
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 89.58
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 87.42
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.0013  Score=46.80  Aligned_cols=63  Identities=14%  Similarity=0.387  Sum_probs=47.2

Q ss_pred             ccCCCCC-cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 021965           13 MKHKGRN-VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRD   89 (304)
Q Consensus        13 ~~~~~~~-~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y~~~~~   89 (304)
                      ...+|.. +.||.++|+++|+.|.+.   |.+      ...|+.|+..|.     +.+..||+|||..|.+.|..-.+
T Consensus        26 ~~s~G~~~~~WTrEEDriIL~~~q~~---G~~------~~tw~~Ia~~L~-----~Rs~~qvr~Rf~~Lm~lf~~~~e   89 (95)
T d1ug2a_          26 VSSTGEKVVLWTREADRVILTMCQEQ---GAQ------PHTFSVISQQLG-----NKTPVEVSHRFRELMQLFHTACE   89 (95)
T ss_dssp             CCCCCCCCSSSCHHHHHHHHHHHHHT---TSC------TTTHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHCSS
T ss_pred             cCCCCCccCCcCHHHHHHHHHHHHHc---CCc------HHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHhhc
Confidence            4444444 689999999999888443   533      456999998774     35788999999999999976443
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure