Citrus Sinensis ID: 021981

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
MASPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKYLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
ccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHc
ccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHc
maspyrdrTAEFRSLSQTLKKIggattavdqpnnsfvspkppnpassrsefNKKASRIGLGIHEASQKIARLAKYLQTLQNLEIvegnysqdrvvHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFsanalrdspfrqhaqpvtepppwsspvnasessqpsalppggvqvgnqlrrrpavdnapshhmEMSMLQQvvprqenysqSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
maspyrdrtaeFRSLSQTLKKIGGattavdqpnnsfvspkppnpassRSEFNKKASRIGLGIHEASQKIARLAKYLQTLQNLEIVegnysqdrvvHSTTVCDDLKSKLMGATKELQDVLTTRtenikahesrkQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
MASPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKYLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
*********************************************************IGLGIHEASQKIARLAKYLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATK*L**VL***************************************************************************************************AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFV*
**SPYRDRTAEFR******************************************SRIGLGIHEASQKIARLAK*************************VCDDLKSK********************************************************************************************************************NVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
***********FRSLSQTLKKIGGATTAVDQPNNSFV**************NKKASRIGLGIHEASQKIARLAKYLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQ***************************PGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
***********F*SLSQTLKKI*************************RSEFNKKASRIGLGIHEASQKIARLAKYLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRK*****************************************************************MEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
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MASPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGxxxxxxxxxxxxxxxxxxxxxEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query304 2.2.26 [Sep-21-2011]
Q9FFK1336 Syntaxin-31 OS=Arabidopsi yes no 0.986 0.892 0.617 1e-101
Q9LK09347 Syntaxin-32 OS=Arabidopsi no no 0.953 0.835 0.448 4e-61
O13644309 Integral membrane protein yes no 0.898 0.883 0.273 1e-24
Q20797413 Putative syntaxin-3 OS=Ca yes no 0.845 0.622 0.284 2e-24
Q08DB5355 Syntaxin-5 OS=Bos taurus yes no 0.842 0.721 0.322 5e-24
Q13190355 Syntaxin-5 OS=Homo sapien yes no 0.842 0.721 0.319 8e-24
Q08851355 Syntaxin-5 OS=Rattus norv yes no 0.710 0.608 0.327 3e-23
Q8K1E0355 Syntaxin-5 OS=Mus musculu yes no 0.710 0.608 0.327 5e-23
Q24509467 Syntaxin-5 OS=Drosophila yes no 0.848 0.552 0.300 7e-22
Q01590340 Integral membrane protein yes no 0.243 0.217 0.472 3e-13
>sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 Back     alignment and function desciption
 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/340 (61%), Positives = 240/340 (70%), Gaps = 40/340 (11%)

Query: 1   MASPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGL 60
           M S +RDRT E  SLSQTLKKIG A  +V Q  +   S K  +P S   EFNKKASRIGL
Sbjct: 1   MGSTFRDRTVELHSLSQTLKKIG-AIPSVHQDEDDPASSKRSSPGS---EFNKKASRIGL 56

Query: 61  GIHEASQKIARLAKY----------------------------------LQTLQNLEIVE 86
           GI E SQKI RLAK                                   LQTLQN+E+ +
Sbjct: 57  GIKETSQKITRLAKLAKQSTIFNDRTVEIQELTVLIRNDITGLNMALSDLQTLQNMELAD 116

Query: 87  GNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPF 146
           GNYSQD+V H T VCDDLK++LMGATK+LQDVLTTR+EN+KAHE+RKQ+FS     DSP 
Sbjct: 117 GNYSQDQVGHYTAVCDDLKTRLMGATKQLQDVLTTRSENMKAHENRKQLFSTKNAVDSPP 176

Query: 147 RQHAQPVTEPPPWSSPVNASESSQPSALPP--GGVQVGNQLRRRPAVDNAPSHHMEMSML 204
           + +A+ V EPPPWSS  N   + Q   LPP   G   G+QLRRR A++NAPS  MEMS+L
Sbjct: 177 QNNAKSVPEPPPWSSSSNPFGNLQQPLLPPLNTGAPPGSQLRRRSAIENAPSQQMEMSLL 236

Query: 205 QQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 264
           QQ VP+QENYSQSRAVALH+VES ITEL GIF  LATMV QQGELAIRIDDNMDESL NV
Sbjct: 237 QQTVPKQENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNV 296

Query: 265 EGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 304
           EGAR+ALL+HL +ISSNRWLM+KIFAVII FL VF+FFVA
Sbjct: 297 EGARSALLQHLTRISSNRWLMMKIFAVIILFLIVFLFFVA 336
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LK09|SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 Back     alignment and function description
>sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 Back     alignment and function description
>sp|Q20797|STX3_CAEEL Putative syntaxin-3 OS=Caenorhabditis elegans GN=syn-3 PE=3 SV=1 Back     alignment and function description
>sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 Back     alignment and function description
>sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 Back     alignment and function description
>sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 Back     alignment and function description
>sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 Back     alignment and function description
>sp|Q24509|STX5_DROME Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 Back     alignment and function description
>sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
255571871342 syntaxin, putative [Ricinus communis] gi 0.990 0.880 0.696 1e-125
224112555347 predicted protein [Populus trichocarpa] 0.980 0.858 0.678 1e-125
449516073338 PREDICTED: syntaxin-31-like [Cucumis sat 0.986 0.887 0.660 1e-121
449463034338 PREDICTED: syntaxin-31-like [Cucumis sat 0.986 0.887 0.660 1e-120
356501139335 PREDICTED: syntaxin-31-like [Glycine max 0.986 0.895 0.654 1e-120
359486424341 PREDICTED: syntaxin-31-like [Vitis vinif 0.934 0.832 0.686 1e-116
297736636395 unnamed protein product [Vitis vinifera] 0.934 0.718 0.686 1e-114
297810679336 T-snare sed 5 [Arabidopsis lyrata subsp. 0.986 0.892 0.644 1e-106
357494667334 Syntaxin-31 [Medicago truncatula] gi|355 0.930 0.847 0.620 1e-105
15239228336 syntaxin-31 [Arabidopsis thaliana] gi|28 0.986 0.892 0.617 1e-99
>gi|255571871|ref|XP_002526878.1| syntaxin, putative [Ricinus communis] gi|223533777|gb|EEF35509.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/339 (69%), Positives = 261/339 (76%), Gaps = 38/339 (11%)

Query: 3   SPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKP---PNPASSRSEFNKKASRIG 59
           + YRDRTAEFRS++QTLKKIGG T++ +Q N S   PKP   P   SSRSEFNKKAS IG
Sbjct: 5   TTYRDRTAEFRSITQTLKKIGGVTSS-NQENGSLSPPKPYSSPRSISSRSEFNKKASLIG 63

Query: 60  LGIHEASQKIARLAKY----------------------------------LQTLQNLEIV 85
           LGI E  QKIARLAK                                   LQTLQN+EI 
Sbjct: 64  LGIQETCQKIARLAKLAKRSSMFDDPTVEIQELTVLIKNDITMLNTALIDLQTLQNMEIA 123

Query: 86  EGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSP 145
           +GNYSQDRVVHST V DDLKSKLMGATKELQDVLTTRTEN+KAHE+RKQIFS+NA R++P
Sbjct: 124 DGNYSQDRVVHSTAVTDDLKSKLMGATKELQDVLTTRTENMKAHENRKQIFSSNASRENP 183

Query: 146 FRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQ 205
           F +  +P+TEPPPWSS  +A  +SQ  ALPP GVQV NQLRRR AVDN PS HME+SMLQ
Sbjct: 184 FARQEKPMTEPPPWSSSAHAFGNSQLPALPPNGVQVSNQLRRRAAVDNTPSQHMELSMLQ 243

Query: 206 QVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 265
           QVVPRQENY+QSRA ALHNVESTI+EL GIFTHLATMVAQQGELAIRIDDNMDESL NVE
Sbjct: 244 QVVPRQENYTQSRAAALHNVESTISELSGIFTHLATMVAQQGELAIRIDDNMDESLTNVE 303

Query: 266 GARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 304
            AR++LLRHLNQISSNRWL+IKIFAVII FL VF+ FVA
Sbjct: 304 NARSSLLRHLNQISSNRWLLIKIFAVIIIFLMVFIIFVA 342

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224112555|ref|XP_002316227.1| predicted protein [Populus trichocarpa] gi|222865267|gb|EEF02398.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449516073|ref|XP_004165072.1| PREDICTED: syntaxin-31-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449463034|ref|XP_004149239.1| PREDICTED: syntaxin-31-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356501139|ref|XP_003519386.1| PREDICTED: syntaxin-31-like [Glycine max] Back     alignment and taxonomy information
>gi|359486424|ref|XP_002268768.2| PREDICTED: syntaxin-31-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736636|emb|CBI25507.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297810679|ref|XP_002873223.1| T-snare sed 5 [Arabidopsis lyrata subsp. lyrata] gi|297319060|gb|EFH49482.1| T-snare sed 5 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357494667|ref|XP_003617622.1| Syntaxin-31 [Medicago truncatula] gi|355518957|gb|AET00581.1| Syntaxin-31 [Medicago truncatula] Back     alignment and taxonomy information
>gi|15239228|ref|NP_196195.1| syntaxin-31 [Arabidopsis thaliana] gi|28380162|sp|Q9FFK1.1|SYP31_ARATH RecName: Full=Syntaxin-31; Short=AtSED5; Short=AtSYP31 gi|9759101|dbj|BAB09670.1| t-SNARE SED5 [Arabidopsis thaliana] gi|15809834|gb|AAL06845.1| AT5g05760/MJJ3_17 [Arabidopsis thaliana] gi|17978873|gb|AAL47408.1| AT5g05760/MJJ3_17 [Arabidopsis thaliana] gi|332003538|gb|AED90921.1| syntaxin-31 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
TAIR|locus:2166419336 SYP31 "syntaxin of plants 31" 0.753 0.681 0.709 5.8e-82
UNIPROTKB|B4DKR0259 STX5 "Syntaxin-5" [Homo sapien 0.460 0.540 0.390 1.1e-31
ASPGD|ASPL0000075749344 sed5 [Emericella nidulans (tax 0.802 0.709 0.320 4.8e-31
UNIPROTKB|G5EGY8329 MGCH7_ch7g683 "Integral membra 0.700 0.647 0.340 4.8e-31
DICTYBASE|DDB_G0277565302 syn5 "putative syntaxin 5" [Di 0.937 0.943 0.311 1.3e-27
ZFIN|ZDB-GENE-040718-18302 stx5a "syntaxin 5A" [Danio rer 0.927 0.933 0.303 9.7e-25
WB|WBGene00006373413 syx-5 [Caenorhabditis elegans 0.944 0.694 0.273 1.1e-23
UNIPROTKB|Q20797413 syn-3 "Putative syntaxin-3" [C 0.944 0.694 0.273 1.1e-23
UNIPROTKB|Q08DB5355 STX5 "Syntaxin-5" [Bos taurus 0.927 0.794 0.311 1.8e-23
UNIPROTKB|Q13190355 STX5 "Syntaxin-5" [Homo sapien 0.927 0.794 0.307 3.8e-23
TAIR|locus:2166419 SYP31 "syntaxin of plants 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 164/231 (70%), Positives = 190/231 (82%)

Query:    76 LQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQI 135
             LQTLQN+E+ +GNYSQD+V H T VCDDLK++LMGATK+LQDVLTTR+EN+KAHE+RKQ+
Sbjct:   106 LQTLQNMELADGNYSQDQVGHYTAVCDDLKTRLMGATKQLQDVLTTRSENMKAHENRKQL 165

Query:   136 FSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPP--GGVQVGNQLRRRPAVDN 193
             FS     DSP + +A+ V EPPPWSS  N   + Q   LPP   G   G+QLRRR A++N
Sbjct:   166 FSTKNAVDSPPQNNAKSVPEPPPWSSSSNPFGNLQQPLLPPLNTGAPPGSQLRRRSAIEN 225

Query:   194 APSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRI 253
             APS  MEMS+LQQ VP+QENYSQSRAVALH+VES ITEL GIF  LATMV QQGELAIRI
Sbjct:   226 APSQQMEMSLLQQTVPKQENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRI 285

Query:   254 DDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 304
             DDNMDESL NVEGAR+ALL+HL +ISSNRWLM+KIFAVII FL VF+FFVA
Sbjct:   286 DDNMDESLVNVEGARSALLQHLTRISSNRWLMMKIFAVIILFLIVFLFFVA 336
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0009504 "cell plate" evidence=IDA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
UNIPROTKB|B4DKR0 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ASPGD|ASPL0000075749 sed5 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G5EGY8 MGCH7_ch7g683 "Integral membrane protein sed5" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277565 syn5 "putative syntaxin 5" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-18 stx5a "syntaxin 5A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00006373 syx-5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q20797 syn-3 "Putative syntaxin-3" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DB5 STX5 "Syntaxin-5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q13190 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FFK1SYP31_ARATHNo assigned EC number0.61760.98680.8928yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 1e-11
pfam0573962 pfam05739, SNARE, SNARE domain 4e-11
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 5e-10
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 5e-06
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 4e-04
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information 
 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 209 PRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 268
            +     + R   L  +E +I EL  IF  + T + +QGE   RI+DN+D++  N++ A 
Sbjct: 1   QQALAREEERDEELEQLEKSIQELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKAN 60

Query: 269 NALLRH 274
             L + 
Sbjct: 61  KRLKKA 66

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs". Length = 66
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 304
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 99.97
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 99.93
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.89
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 99.81
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.77
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.75
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.41
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.3
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.21
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 98.51
PF1141629 Sed5p: Integral membrane protein Sed5p; InterPro: 97.8
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.61
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 97.53
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.52
PF1049687 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N 97.39
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.33
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 97.21
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 96.73
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 96.6
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 96.55
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 96.52
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 96.35
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 96.16
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 95.39
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 94.62
KOG2678244 consensus Predicted membrane protein [Function unk 92.65
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 92.57
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 91.32
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 91.04
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 89.64
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 88.34
PF10267395 Tmemb_cc2: Predicted transmembrane and coiled-coil 86.72
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 85.81
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 85.27
KOG3850455 consensus Predicted membrane protein [Function unk 84.07
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 84.07
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 83.84
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 83.8
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 83.18
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 83.08
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 81.34
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=9.9e-57  Score=403.07  Aligned_cols=276  Identities=38%  Similarity=0.566  Sum_probs=214.0

Q ss_pred             CCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 021981            3 SPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKY-------   75 (304)
Q Consensus         3 ~~~~DRT~eF~s~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seF~~~A~~I~~~i~~~~~kL~kL~~L-------   75 (304)
                      |+++|||.||++||++++.|++..+ .+.  .   .+-+....++.+||++.|+.||++|+.|.+||+||+.|       
T Consensus         1 m~~rDRT~Ef~~~~~s~~~r~~~~~-~~~--~---~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f   74 (311)
T KOG0812|consen    1 MSFRDRTSEFQAAVKSLKKRNATRG-VNQ--A---DPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLF   74 (311)
T ss_pred             CCcchhhHHHHHHHHHHHHHhhccc-ccc--C---CCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            6899999999999999999974332 111  1   11234457789999999999999999999999999999       


Q ss_pred             ---------------------------HHHHHHHhhhhCCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981           76 ---------------------------LQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKA  128 (304)
Q Consensus        76 ---------------------------Lq~l~~~~~~~~~~~~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~  128 (304)
                                                 ||+|.+..+  ..++.|...|+++||..|+++|++++++|++|||.|++++|+
T Consensus        75 ~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~g--n~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka  152 (311)
T KOG0812|consen   75 DDRPVEIQELTFIIKQDITSLNSQIAQLQEIVKANG--NLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKA  152 (311)
T ss_pred             cCcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhc--cccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence                                       777774433  223477899999999999999999999999999999999999


Q ss_pred             HHhhhhhhcccccCCCcc-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHhhh
Q 021981          129 HESRKQIFSANALRDSPF-RQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQV  207 (304)
Q Consensus       129 ~~eRr~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ql  207 (304)
                      .+.|+++|+....+.++. .++.+  .-+.|+..      +.     ++. ...+..+...+-.| .+..   .++||++
T Consensus       153 ~k~R~dkfs~~~a~~~a~p~~n~~--a~~~~~~~------l~-----~~~-~~~sq~~~~ln~gd-~~~~---qqqQm~l  214 (311)
T KOG0812|consen  153 VKNRRDKFSASYASLNANPVSNSA--ARLHPLKL------LV-----DPK-DEASQDVESLNMGD-SSNP---QQQQMAL  214 (311)
T ss_pred             HhhHHHHhccccCCCCCcccCccc--ccCCchhh------hc-----Cch-hhcccccccccccC-CCCC---HHHHHHH
Confidence            999999998764332110 01000  00001000      00     000 00000000000011 1111   2567888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Q 021981          208 VPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIK  287 (304)
Q Consensus       208 ~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~~  287 (304)
                      +++.++|+++|.+++++||++|.|||+||.+||+||.+|||+|.|||+||+++..||++|+.+|.||+++.++|||+|++
T Consensus       215 l~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvk  294 (311)
T KOG0812|consen  215 LDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVK  294 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHH
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC
Q 021981          288 IFAVIIFFLTVFMFFVA  304 (304)
Q Consensus       288 i~~iliv~~~~~~~~~a  304 (304)
                      ||+|||||||+|++|+|
T Consensus       295 iF~i~ivFflvfvlf~~  311 (311)
T KOG0812|consen  295 IFGILIVFFLVFVLFLA  311 (311)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999999986

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18 Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG3850 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 8e-16
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 4e-15
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 5e-12
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 7e-12
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 8e-12
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 1e-11
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 3e-11
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 7e-11
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
 Score = 70.9 bits (174), Expect = 8e-16
 Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 198 HMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNM 257
           HM+ S+ +Q +    +  ++R   +  +E++I EL  +F  +A +V  QGE+  RI+ N+
Sbjct: 3   HMDSSISKQAL----SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV 58

Query: 258 DESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFV 303
           + ++  VE A +   + +   S  R   I I    +    +    +
Sbjct: 59  EHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTI 104
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 99.92
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.9
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 99.87
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.86
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.84
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.82
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.82
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.78
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.78
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.72
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.47
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.99
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 97.71
1mqs_B50 SED5P, integral membrane protein SED5; SM-protein, 97.45
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.22
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 96.93
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 96.9
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 96.88
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 96.75
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 96.36
3b5n_D64 Protein transport protein SEC9; snare complex, syn 96.27
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 96.21
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 95.84
1s94_A180 S-syntaxin; three helix bundle, structural plastic 95.44
3b5n_C70 Protein transport protein SEC9; snare complex, syn 94.2
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 94.11
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 93.89
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 93.66
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 91.64
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 91.43
2nps_C81 Vesicle transport through interaction with T- snar 89.33
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
Probab=99.92  E-value=4.9e-26  Score=209.85  Aligned_cols=196  Identities=18%  Similarity=0.241  Sum_probs=121.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhhhh-
Q 021981           45 ASSRSEFNKKASRIGLGIHEASQKIARLAKY-------------------------------------LQTLQNLEIVE-   86 (304)
Q Consensus        45 ~~~~seF~~~A~~I~~~i~~~~~kL~kL~~L-------------------------------------Lq~l~~~~~~~-   86 (304)
                      ....++|...++.|+.+|.++..++.+|..|                                     |+.|....... 
T Consensus        40 ~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~  119 (279)
T 2xhe_B           40 EPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQ  119 (279)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4467899999999999999999999999888                                     22222211110 


Q ss_pred             C-----CCchh-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCccccCCCCCCCCCCCC
Q 021981           87 G-----NYSQD-RVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWS  160 (304)
Q Consensus        87 ~-----~~~~q-~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~~~eRr~~f~~~~~~~~~~~~~~~~~~~~~~~~  160 (304)
                      .     ..+.. ...|+.+++..|..+|++++..|+.++..|.+.+|.+..|.  |...+    |           .+..
T Consensus       120 ~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~--~~i~~----~-----------~~~~  182 (279)
T 2xhe_B          120 QEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ--CRVVE----P-----------SLSD  182 (279)
T ss_dssp             HHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS--CCSSC----C-----------CCSS
T ss_pred             hcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhC----C-----------CCCH
Confidence            0     01122 45899999999999999999999999999999998776553  21111    0           0000


Q ss_pred             CCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981          161 SPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLA  240 (304)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ql~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la  240 (304)
                      .           .+        ..+...+    .+.  ..++.+.+..+....++++|+++|.+||++|.||++||.+|+
T Consensus       183 e-----------e~--------~~~~e~g----~~~--~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla  237 (279)
T 2xhe_B          183 D-----------AI--------QKVIEHG----TEG--IFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMS  237 (279)
T ss_dssp             T-----------TH--------HHHHHHC-----------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-----------HH--------HHHHhCC----chH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0           00        0000000    000  001112222334567899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 021981          241 TMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR  282 (304)
Q Consensus       241 ~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r  282 (304)
                      +||.+||++||+||+||+.|..||+.|+.+|.||.++++++|
T Consensus       238 ~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R  279 (279)
T 2xhe_B          238 TLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR  279 (279)
T ss_dssp             TTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence            999999999999999999999999999999999999988765
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 304
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 6e-11
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.6 bits (141), Expect = 6e-11
 Identities = 20/200 (10%), Positives = 57/200 (28%), Gaps = 11/200 (5%)

Query: 49  SEFNKKASRIGLGIHEASQKIARLAKYLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKL 108
             F  K S+I   + +    I ++    + L          ++++  H     D+  ++ 
Sbjct: 5   VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEV------NEEQASHLRHSLDNFVAQA 58

Query: 109 MGATKELQDVLTTRTENIKAHESRKQIFS--ANALRDSPFRQHAQPVTEPPPWSSPVNAS 166
                +L++ + +   +     +++                     + +          +
Sbjct: 59  TDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLI---QDYRIVDSNYKEENKEQA 115

Query: 167 ESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVE 226
           +       P                    S  +  +  +          Q+R   L  +E
Sbjct: 116 KRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLE 175

Query: 227 STITELGGIFTHLATMVAQQ 246
            ++ EL  +F  +  +V +Q
Sbjct: 176 KSMAELTQLFNDMEELVIEQ 195

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.42
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 96.71
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=1.7e-13  Score=115.67  Aligned_cols=163  Identities=13%  Similarity=0.126  Sum_probs=106.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHH-------HHHhhh---hCCCchhHHHHHH
Q 021981           48 RSEFNKKASRIGLGIHEASQKIARLAKY-------------------LQTL-------QNLEIV---EGNYSQDRVVHST   98 (304)
Q Consensus        48 ~seF~~~A~~I~~~i~~~~~kL~kL~~L-------------------Lq~l-------~~~~~~---~~~~~~q~~~h~~   98 (304)
                      ..+|...++.|..+|..+..++.+|..+                   +..+       .+....   ....+.....+..
T Consensus         4 ~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~   83 (196)
T d1fioa_           4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQ   83 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            3579999999999999999999998888                   1111       110000   0011234456778


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021981           99 TVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGG  178 (304)
Q Consensus        99 ~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~~~eRr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (304)
                      +.+..|..+|.+++..|+.++..|.+.+|....|...+....... +..                           +...
T Consensus        84 ~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~~~~~~-~~~---------------------------~~~~  135 (196)
T d1fioa_          84 AQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATE-DEV---------------------------EAAI  135 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCH-HHH---------------------------HHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccc-hhh---------------------------hHhh
Confidence            999999999999999999999999999999988886654332110 000                           0000


Q ss_pred             CccCcccccCCcCCCCCchhh-hhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981          179 VQVGNQLRRRPAVDNAPSHHM-EMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQG  247 (304)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~-~~~~q~ql~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qg  247 (304)
                      ...+.        . ....+. ......+.......++++|+++|.+||++|.||++||.+||+||.+|.
T Consensus       136 ~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         136 SDVGG--------Q-QIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             SHHHH--------H-HHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             ccccc--------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence            00000        0 000000 000111122345788999999999999999999999999999999984
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure