Citrus Sinensis ID: 021987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQVK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgnnedgksfksekpsspppsdqgnihmytDWAAMQayygprvaippyynspiasghapqpymwgpaqpmmppygapyaaiystggvyahpavplgshahnhgvptspaavtplnteaptkssgnadRGLAKKLKGLDGLAMSIGnasaesaeggaeqrpsqseadgstdgsdgntvragqsrkkrsregtpiaggdgktdiqstpvpvgvnatpdKVLATAvaptsvsgkpvgpvlspgmptklelrnapgmnvkasptsvpqpcavlppetwiQNERELKRERRKQSNRESARRSRLRKQVK
Flexible Loop (DISEMBL)
mgnnedgksfksekpsspppsdQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTeaptkssgnadrGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSqseadgstdgsdgntvragqsrkkrsregtpiaggdgktdiqstpvPVGVNATPDKVLATAVAptsvsgkpvgpvlspgMPTKLELRNAPGMNVKASptsvpqpcavlppetwiqnerelkrerrkqsnresarrsrlrkqvk
Low Complexity Region (SEG)
MGNNEDGksfksekpsspppsDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWgpaqpmmppygapyaaIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNadrglakklkgldglaMsignasaesaeggaeQRPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQVK
Disordered region (IsUnstruct)
*************************IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPL*****************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*****************************TDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPL*****************************************************************************************************************************************VGPVLSPGMPTKLEL*********************************************************
Disordered Region (DISEMBL)
**********************QGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE*********DRGLAKKLKGLDGLAMSIGNA*********************************************IAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNER*************************
Disordered Region (DISPRO)
************************NIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSP**************************************************************************************************************************KPVGPVLSPGMPTKLELRN*******************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	304	2.2.26 [Sep-21-2011]
Q99089	411	Common plant regulatory f	N/A	no	0.950	0.703	0.519	1e-79
P42776	382	G-box-binding factor 3 OS	yes	no	0.884	0.704	0.540	1e-71
P42775	360	G-box-binding factor 2 OS	no	no	0.884	0.747	0.457	6e-56
Q99142	265	Transcriptional activator	N/A	no	0.690	0.792	0.513	1e-48
P42774	315	G-box-binding factor 1 OS	no	no	0.786	0.758	0.331	5e-23
Q99091	296	Light-inducible protein C	N/A	no	0.562	0.577	0.285	3e-13
P25032	354	DNA-binding protein EMBP-	N/A	no	0.085	0.073	0.961	1e-06
P23922	349	Transcription factor HBP-	N/A	no	0.101	0.088	0.696	6e-05

>sp|Q99089|CPRF1_PETCR Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1

 Score =  296 bits (758), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 160/308 (51%), Positives = 206/308 (66%), Gaps = 19/308 (6%)

Query: 1   MGNNEDGKSFKSEK---PSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN +D K+ K EK   P  P   DQ N H+Y DWAAMQAYYGPRVA+PPY+N  +ASG 
Sbjct: 1   MGNTDDVKAVKPEKLSSPPPPAAPDQSNSHVYPDWAAMQAYYGPRVALPPYFNPAVASGQ 60

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
           +P PYMWGP QP+MPPYG PYAA+Y+ GGVYAHP VPL              A +P++ +
Sbjct: 61  SPHPYMWGPPQPVMPPYGVPYAALYAHGGVYAHPGVPL--------------AASPMSMD 106

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
              KSSG  + GL KKLKG D LAMSIGN  A+S+EG  E+  SQS E +GS+DGS+ N+
Sbjct: 107 THAKSSGTNEHGLIKKLKGHDDLAMSIGNGKADSSEGEMERTLSQSKETEGSSDGSNENS 166

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
            RA  + +KR R+  P   G+ K + QS+ +P    A  +K+L   VA   V+GK VG V
Sbjct: 167 KRAAVNGRKRGRDEAPNMIGEVKIETQSSVIP-SPRAKSEKLLGITVATPMVAGKVVGTV 225

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
           +SP M + LEL+++P  +   SP    QP  ++P ++W+ N+R+LKRERRKQSNRESARR
Sbjct: 226 VSPSMTSSLELKDSPKEHAVNSPAGGQQPSTMMPNDSWLHNDRDLKRERRKQSNRESARR 285

Query: 297 SRLRKQVK 304
           SRLRKQ +
Sbjct: 286 SRLRKQAE 293

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Petroselinum crispum (taxid: 4043)

>sp|P42776|GBF3_ARATH G-box-binding factor 3 OS=Arabidopsis thaliana GN=GBF3 PE=1 SV=2

 Score =  270 bits (690), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/296 (54%), Positives = 194/296 (65%), Gaps = 27/296 (9%)

Query: 11  KSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIA-SGHAPQPYMWGPAQP 69
           KS+KPSSPP  DQ N+H+Y DWAAMQAYYGPRVA+PPYYNS +A SGH P PYMW P Q 
Sbjct: 13  KSDKPSSPP-VDQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAMAASGHPPPPYMWNP-QH 70

Query: 70  MMPPYGAPYAAIY-STGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNADR 128
           MM PYGAPYAA+Y   GGVYAHP +P+GS       P      T L+ + PTKS+GN D 
Sbjct: 71  MMSPYGAPYAAVYPHGGGVYAHPGIPMGSLPQGQKDPPLTTPGTLLSIDTPTKSTGNTDN 130

Query: 129 GLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSDGNTVRAGQSRKKRSR 188
           GL KKLK  DGLAMS+GN + E+     ++  + SE DGSTDGSDGNT  A + + KRSR
Sbjct: 131 GLMKKLKEFDGLAMSLGNGNPENGADEHKRSRNSSETDGSTDGSDGNTTGADEPKLKRSR 190

Query: 189 EGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELR 248
           EGTP    DGK  +Q++       ++ D    T V     SG     +LS          
Sbjct: 191 EGTPTK--DGKQLVQASSFHSVSPSSGD----TGVKLIQGSGA----ILS---------- 230

Query: 249 NAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQVK 304
             PG++  ++P  + Q  A++PPETW+QNERELKRERRKQSNRESARRSRLRKQ +
Sbjct: 231 --PGVSANSNPF-MSQSLAMVPPETWLQNERELKRERRKQSNRESARRSRLRKQAE 283

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

>sp|P42775|GBF2_ARATH G-box-binding factor 2 OS=Arabidopsis thaliana GN=GBF2 PE=1 SV=1

 Score =  218 bits (554), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 141/308 (45%), Positives = 177/308 (57%), Gaps = 39/308 (12%)

Query: 1   MGNNEDGK-SFKSEKPSSPPPSDQGNIHMYT-DWAAMQAYYGPRVAIPPYYNSPIASGHA 58
           MG+NE+G  +  S+KPS     +Q N+H+Y  DWAAMQAYYGPRV IP YYNS +A GHA
Sbjct: 1   MGSNEEGNPTNNSDKPSQAAAPEQSNVHVYHHDWAAMQAYYGPRVGIPQYYNSNLAPGHA 60

Query: 59  PQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEA 118
           P PYMW    PMM PYGAPY      GGVYAHP V +GS        ++    TPL  +A
Sbjct: 61  PPPYMWASPSPMMAPYGAPYPPFCPPGGVYAHPGVQMGSQPQGPVSQSASGVTTPLTIDA 120

Query: 119 PTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEA--DGSTDGSDGNT 176
           P  S+GN+D G  KKLK  DGLAMSI N    SAE  + +  S   +  DGS++GSDGNT
Sbjct: 121 PANSAGNSDHGFMKKLKEFDGLAMSISNNKVGSAEHSSSEHRSSQSSENDGSSNGSDGNT 180

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
              G+  +++ R+    + G+  +   S P+  G N  PD  + T               
Sbjct: 181 T-GGEQSRRKRRQQRSPSTGERPSSQNSLPL-RGENEKPDVTMGT--------------- 223

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
             P MPT +  +N+ GMN       VPQP        W  NE+E+KRE+RKQSNRESARR
Sbjct: 224 --PVMPTAMSFQNSAGMN------GVPQP--------W--NEKEVKREKRKQSNRESARR 265

Query: 297 SRLRKQVK 304
           SRLRKQ +
Sbjct: 266 SRLRKQAE 273

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box.

Arabidopsis thaliana (taxid: 3702)

>sp|Q99142|TAF1_TOBAC Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/226 (51%), Positives = 142/226 (62%), Gaps = 16/226 (7%)

Query: 85  GGVYAHPAVPLGSHAHNHGVPTSPAAV-----TPLNTEAPTKSSGNADRGLAKKLKGLDG 139
           GGVYAHP VP+GSH   HG+ TSPA         L+ +A  KSS N+DRGL         
Sbjct: 3   GGVYAHPGVPIGSHPPGHGMATSPAVSQAMDGASLSLDASAKSSENSDRGL--------- 53

Query: 140 LAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDG 198
           LAMS+GN SA++ EGGA+   SQS + + STDGSD N     +  KKRSRE TP   GD 
Sbjct: 54  LAMSLGNGSADNIEGGADHGNSQSGDTEDSTDGSDTNGAGVSERSKKRSRETTPDNSGDS 113

Query: 199 KTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPGMNVKAS 258
           K+ ++       +N   +K +  AV P  V  K +G VLSP M T LE+RN    ++KAS
Sbjct: 114 KSHLRRCQPTGEINDDSEKAI-VAVRPGKVGEKVMGTVLSPSMTTTLEMRNPASTHLKAS 172

Query: 259 PTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQVK 304
           PT+V Q    LP E W+QNERELKRE+RKQSNRESARRSRLRKQ +
Sbjct: 173 PTNVSQLSPALPNEAWLQNERELKREKRKQSNRESARRSRLRKQAE 218

Trans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.

Nicotiana tabacum (taxid: 4097)

>sp|P42774|GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/311 (33%), Positives = 141/311 (45%), Gaps = 72/311 (23%)

Query: 1   MGNNEDGKSFKSEKPSSP----PPSDQGNIHMYTDWA-AMQAYYGPRVAIPPYYNSPIAS 55
           MG +ED   FK+ KP+S     PP+       Y DW  +MQAYYG      P++ SP+ S
Sbjct: 1   MGTSEDKMPFKTTKPTSSAQEVPPTP------YPDWQNSMQAYYGGGGTPNPFFPSPVGS 54

Query: 56  GHAPQPYMWGPAQPMMPPYG--APYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTP 113
             +P PYMWG    MMPPYG   PY A+Y  G VYAHP++P+            P    P
Sbjct: 55  -PSPHPYMWGAQHHMMPPYGTPVPYPAMYPPGAVYAHPSMPM------------PPNSGP 101

Query: 114 LNTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSD 173
            N E P K   +  +      K  +G   ++  +  + A    E     S   GS+D +D
Sbjct: 102 TNKE-PAKDQASGKKSKGNSKKKAEGGDKALSGSGNDGASHSDE-----SVTAGSSDEND 155

Query: 174 GNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPV 233
            N  +  Q   ++   G  +A    ++                    T     SV  KPV
Sbjct: 156 ENANQQEQGSIRKPSFGQMLADASSQS-------------------TTGEIQGSVPMKPV 196

Query: 234 GPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRES 293
            P       T L +    GM++ +S   VP           +++ERELKR++RKQSNRES
Sbjct: 197 APG------TNLNI----GMDLWSSQAGVP-----------VKDERELKRQKRKQSNRES 235

Query: 294 ARRSRLRKQVK 304
           ARRSRLRKQ +
Sbjct: 236 ARRSRLRKQAE 246

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

>sp|Q99091|CPRF3_PETCR Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 104/259 (40%), Gaps = 88/259 (33%)

Query: 48  YYNSPIASGHAPQPYMWGPAQPMMPPYGAP--YAAIYSTGGVYAHPAVPLGSHAHNHGVP 105
           +Y S + S  +P PYMW      + PYG P  Y A++  GG++ HP            VP
Sbjct: 48  FYASTVGSP-SPHPYMWRNQHRFILPYGIPMQYPALFLPGGIFTHPI-----------VP 95

Query: 106 TSPAAVTPLNTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEA 165
           T P  + P + E   K S    R  AKK  G+ G       +++ + + GAE + + S +
Sbjct: 96  TDP-NLAPTSGEVGRKISDEKGRTSAKKSIGVSG-------STSFAVDKGAENQKAASSS 147

Query: 166 DGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAP 225
           D                            G DG  +++S P+ V              AP
Sbjct: 148 DNDCPSLSSEN------------------GVDGSLEVRSNPLDVA-------------AP 176

Query: 226 TSVSGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRER 285
            ++       V+  GM                             P+  + +ERELKR+R
Sbjct: 177 GAI-------VVHDGM----------------------------LPDQRVNDERELKRQR 201

Query: 286 RKQSNRESARRSRLRKQVK 304
           RKQSNRESARRSRLRKQ K
Sbjct: 202 RKQSNRESARRSRLRKQAK 220

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|P25032|EMBP1_WHEAT DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 26/26 (100%)

Query: 277 NERELKRERRKQSNRESARRSRLRKQ 302
           +ERELKRERRKQSNRESARRSRLRKQ
Sbjct: 247 DERELKRERRKQSNRESARRSRLRKQ 272

Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 28/33 (84%), Gaps = 2/33 (6%)

Query: 272 ETWIQNERELKRERRKQSNRESARRSRLRKQVK 304
           E W  +ERELK+++RK SNRESARRSRLRKQ +
Sbjct: 246 EQW--DERELKKQKRKLSNRESARRSRLRKQAE 276

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
357512481	425	G-box binding factor [Medicago truncatul	0.990	0.708	0.665	1e-109
388501482	425	unknown [Medicago truncatula]	0.990	0.708	0.662	1e-109
255541782	401	Common plant regulatory factor CPRF-1, p	0.914	0.693	0.669	1e-106
364521140	421	bZIP protein [Medicago sativa]	0.990	0.714	0.649	1e-106
449432082	419	PREDICTED: common plant regulatory facto	0.986	0.715	0.645	1e-105
307136354	419	bzip transcription factor [Cucumis melo	0.986	0.715	0.642	1e-104
51870705	424	bZip transcription factor [Psophocarpus	0.986	0.707	0.642	1e-103
356560615	424	PREDICTED: common plant regulatory facto	0.986	0.707	0.637	1e-103
359489695	430	PREDICTED: common plant regulatory facto	1.0	0.706	0.697	1e-102
169959	423	G-box binding factor, partial [Glycine m	0.983	0.706	0.636	1e-102

>gi|357512481|ref|XP_003626529.1| G-box binding factor [Medicago truncatula] gi|355501544|gb|AES82747.1| G-box binding factor [Medicago truncatula]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/308 (66%), Positives = 239/308 (77%), Gaps = 7/308 (2%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGN---IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN+++ KS K+EKPSSP   DQ N   +H+Y DWAAMQAYYGPRVA+PPYYNSP+ASGH
Sbjct: 1   MGNSDEEKSTKTEKPSSPVTVDQTNQTNVHVYPDWAAMQAYYGPRVAMPPYYNSPVASGH 60

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
            P PYMWGP QPMMPPYG PYAA+Y  GGVY HPAVP+G H H+ G+ +SPA  TPL+ E
Sbjct: 61  TPHPYMWGPPQPMMPPYGHPYAAMYPHGGVYTHPAVPIGPHPHSQGISSSPATGTPLSIE 120

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
            P KSSGN D+GL KKLKG DGLAMSIGN  AESAE GAE R SQS   +GS+DGSDGNT
Sbjct: 121 TPPKSSGNTDQGLMKKLKGFDGLAMSIGNGHAESAEPGAESRQSQSVNTEGSSDGSDGNT 180

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
             A Q+R+KRSREGTP   G+GKT+ Q + +   + A+ DK++  AVAP  V+G+ VGPV
Sbjct: 181 SGANQTRRKRSREGTPTTDGEGKTNTQGSQISKEIAAS-DKMM--AVAPAGVTGQLVGPV 237

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
            S  M T LELRN+  ++ K +PTS PQP AVLPPE WIQNERELKRERRKQSNRESARR
Sbjct: 238 ASSAMTTALELRNSSSVHSKTNPTSTPQPSAVLPPEAWIQNERELKRERRKQSNRESARR 297

Query: 297 SRLRKQVK 304
           SRLRKQ +
Sbjct: 298 SRLRKQAE 305

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501482|gb|AFK38807.1| unknown [Medicago truncatula]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/308 (66%), Positives = 238/308 (77%), Gaps = 7/308 (2%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGN---IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN+++ KS K+EKPSSP   DQ N   +H+Y DWAAMQAYYGPRVA+PPYYNSP+ASGH
Sbjct: 1   MGNSDEEKSTKTEKPSSPVTVDQTNQTNVHVYPDWAAMQAYYGPRVAMPPYYNSPVASGH 60

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
            P PYMWGP QPMMPPYG PYAA+Y  GGVY HPAVP+G H H+ G+ +SPA  TPL+ E
Sbjct: 61  TPHPYMWGPPQPMMPPYGHPYAAMYPHGGVYTHPAVPIGPHPHSQGISSSPATGTPLSIE 120

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
            P KSSGN D+GL KKLKG DGLA SIGN  AESAE GAE R SQS   +GS+DGSDGNT
Sbjct: 121 TPPKSSGNTDQGLMKKLKGFDGLATSIGNGHAESAEPGAESRQSQSVNTEGSSDGSDGNT 180

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
             A Q+R+KRSREGTP   G+GKT+ Q + +   + A+ DK++  AVAP  V+G+ VGPV
Sbjct: 181 SGANQTRRKRSREGTPTTDGEGKTNTQGSQISKEIAAS-DKMM--AVAPAGVTGQLVGPV 237

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
            S  M T LELRN+  ++ K +PTS PQP AVLPPE WIQNERELKRERRKQSNRESARR
Sbjct: 238 ASSAMTTALELRNSSSVHSKTNPTSTPQPSAVLPPEAWIQNERELKRERRKQSNRESARR 297

Query: 297 SRLRKQVK 304
           SRLRKQ +
Sbjct: 298 SRLRKQAE 305

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541782|ref|XP_002511955.1| Common plant regulatory factor CPRF-1, putative [Ricinus communis] gi|223549135|gb|EEF50624.1| Common plant regulatory factor CPRF-1, putative [Ricinus communis]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/306 (66%), Positives = 228/306 (74%), Gaps = 28/306 (9%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQ 60
           MGNNE+GKS K +K SSP P DQ NIH+Y DWAAMQAYYGPR+A+PPYYNS +ASGHAP 
Sbjct: 3   MGNNEEGKSAKRDKSSSPAPPDQANIHVYPDWAAMQAYYGPRMALPPYYNSAMASGHAPH 62

Query: 61  PYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPT 120
           PYMWGP QPMMPPYG PYAA+YS GGVYAHPAVP+GS    HGVP SPAAVTPLN E PT
Sbjct: 63  PYMWGPPQPMMPPYGTPYAAVYSHGGVYAHPAVPIGSQPPGHGVPASPAAVTPLNVETPT 122

Query: 121 KSSGNADRGLAKKLKGLDGLAMSIGN--ASAESAEGGAEQRPSQSEADGSTDGSDGNTVR 178
           KS+GNADRGL KKLKG DGLAMSIGN  +  ESAEGG  +    SE +GST+GSDGNT  
Sbjct: 123 KSTGNADRGLIKKLKGFDGLAMSIGNGHSKVESAEGGERRLSQSSETEGSTNGSDGNTT- 181

Query: 179 AGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLS 238
           AG   KKRSREGTP  GG+ +T+ +   +P G                    K VG V+S
Sbjct: 182 AG---KKRSREGTPTIGGEIRTETRVNSLPTG------------------EAKSVGSVIS 220

Query: 239 PGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSR 298
           P M T LELRN+P   V A+ T+V QPC VLPPETWIQNERELKRERRKQSNRESARRSR
Sbjct: 221 PSMSTALELRNSP---VSAAKTNV-QPCPVLPPETWIQNERELKRERRKQSNRESARRSR 276

Query: 299 LRKQVK 304
           LRKQ +
Sbjct: 277 LRKQAE 282

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|364521140|gb|AEW66884.1| bZIP protein [Medicago sativa]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/308 (64%), Positives = 234/308 (75%), Gaps = 7/308 (2%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGN---IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN+++ KS K+EKPSSP   DQ N   +H+Y DWAAMQAYYGPRVA+PPYYNSP+ASGH
Sbjct: 1   MGNSDEEKSTKTEKPSSPVTVDQTNQTNVHVYPDWAAMQAYYGPRVAMPPYYNSPVASGH 60

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
            P PYMWGP Q MMPPYG PYAA+Y  GGVY HPAVP+G H H+  + +SPA  TPL+ E
Sbjct: 61  TPHPYMWGPPQHMMPPYGHPYAAMYPHGGVYTHPAVPIGPHPHSQEISSSPATGTPLSIE 120

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
            P KSSGN D+GL KKLKG DGLAMSIGN  AESAE GAE R SQS   +GS+DGSDGNT
Sbjct: 121 TPPKSSGNTDQGLMKKLKGFDGLAMSIGNGHAESAEPGAESRQSQSVNTEGSSDGSDGNT 180

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
             A Q+R+KRSRE TP   G+GKT  Q + V   ++ + DK++  AVAP  V+G+ VGP 
Sbjct: 181 SGANQTRRKRSRERTPTTDGEGKTHTQGSQVSKEISVS-DKMM--AVAPAGVTGQLVGPA 237

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
           +S  M T LELRN+  ++ K +PTS PQP A LPPE WIQNERELKRERRKQSNRESARR
Sbjct: 238 VSSAMTTALELRNSSSVHSKINPTSAPQPSAALPPEAWIQNERELKRERRKQSNRESARR 297

Query: 297 SRLRKQVK 304
           SRLRKQ +
Sbjct: 298 SRLRKQAE 305

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432082|ref|XP_004133829.1| PREDICTED: common plant regulatory factor 1-like [Cucumis sativus] gi|449480276|ref|XP_004155848.1| PREDICTED: common plant regulatory factor 1-like [Cucumis sativus]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/313 (64%), Positives = 241/313 (76%), Gaps = 13/313 (4%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQ------GNIHMYTDWAAMQAYYGPRVAIPPYYNSPIA 54
           MG +E+ KS K+EKPSSP P DQ       +IH++ DWAAMQAYYGPRVA+PPYYNS +A
Sbjct: 1   MGTSEEAKSVKTEKPSSPTPPDQNGVPNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVA 60

Query: 55  SGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPL 114
           SGHAP PYMWGP Q M+PPYG PYAAIYS GGVYAHPAV +G H+H  GVP+SPAA TPL
Sbjct: 61  SGHAPHPYMWGPPQ-MIPPYGTPYAAIYSHGGVYAHPAVSVGPHSHAPGVPSSPAAATPL 119

Query: 115 NTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSD 173
           + E P+K SGN+ +GL KKLKG DGLAMSIGN S ESAEGGAE   S+S E +GS+DGSD
Sbjct: 120 SIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVSTESAEGGAEHGQSESMETEGSSDGSD 179

Query: 174 GNTVRAGQSRKKRSREGTPIAGG-DGKTDIQSTPVPVG-VNATPDKVLATAVAPTSVSGK 231
           G T  A  +++KRSREGTP  GG D K + Q++PV    +N + +K+L T  A T+ +GK
Sbjct: 180 GTTAGANHNKRKRSREGTPTTGGKDAKIEPQASPVTAAEMNESSNKLLGTTKA-TNATGK 238

Query: 232 PVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNR 291
            +G V+SPGM T LELRN+  MN   SPT+VP PC+VLP E W+QNE+ELKRERRKQSNR
Sbjct: 239 -LGSVISPGMSTALELRNSSSMNAMTSPTTVP-PCSVLPSEVWLQNEKELKRERRKQSNR 296

Query: 292 ESARRSRLRKQVK 304
           ESARRSRLRKQ +
Sbjct: 297 ESARRSRLRKQAE 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136354|gb|ADN34168.1| bzip transcription factor [Cucumis melo subsp. melo]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/313 (64%), Positives = 238/313 (76%), Gaps = 13/313 (4%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQ------GNIHMYTDWAAMQAYYGPRVAIPPYYNSPIA 54
           MG +E+ KS K+EKPSSP P DQ       +IH++ DWAAMQAYYGPRVA+PPYYNS +A
Sbjct: 1   MGTSEEAKSVKTEKPSSPTPPDQNGVPNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVA 60

Query: 55  SGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPL 114
           SGHAP PYMWGP Q M+PPYG PYAAIYS GGVYAHPAV +G H+H  GVP+SPAA TPL
Sbjct: 61  SGHAPHPYMWGPPQ-MIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHAPGVPSSPAAATPL 119

Query: 115 NTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSD 173
           + E P+K SGN+ +GL KKLKG DGLAMSIGN S ESAEGGAE   S+S E +GS+DGSD
Sbjct: 120 SIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVSTESAEGGAEHGQSESMETEGSSDGSD 179

Query: 174 GNTVRAGQSRKKRSREGTPIAGG-DGKTDIQSTPVPVG-VNATPDKVLATAVAPTSVSGK 231
           G T  A  +++KRSREGTP  GG D K + Q++PV    +N +  K+L T  A  + +GK
Sbjct: 180 GTTAGASHNKRKRSREGTPTTGGKDAKIEPQASPVTAAEMNESSSKLLGTTKA-VNATGK 238

Query: 232 PVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNR 291
            +G V+SPGM T LELRN   MN   SPT+VP PC+VLP E W+QNE+ELKRERRKQSNR
Sbjct: 239 -LGSVISPGMSTALELRNPSSMNAMTSPTTVP-PCSVLPSEVWLQNEKELKRERRKQSNR 296

Query: 292 ESARRSRLRKQVK 304
           ESARRSRLRKQ +
Sbjct: 297 ESARRSRLRKQAE 309

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51870705|dbj|BAD42432.1| bZip transcription factor [Psophocarpus tetragonolobus]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/308 (64%), Positives = 230/308 (74%), Gaps = 8/308 (2%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGN---IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN+E+GKS K+  PSSP  +DQ N   IH+Y DWAAMQ YYGPRV IPPY+NS +ASGH
Sbjct: 1   MGNSEEGKSIKTGSPSSPATTDQTNQPSIHVYPDWAAMQ-YYGPRVNIPPYFNSAVASGH 59

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
           AP PYMWG  Q MMPPYG PYAA YS GGVY HPAV +G H H  GVP+ PAA TP + E
Sbjct: 60  APHPYMWGSPQAMMPPYGPPYAAFYSHGGVYTHPAVAIGPHPHGQGVPSPPAAGTPSSVE 119

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
           +PTK SGN D+GL KKLKG DGLAMSIGN +AESAE GAE R SQS + +GS+DGSDGNT
Sbjct: 120 SPTKLSGNTDQGLMKKLKGFDGLAMSIGNCNAESAERGAENRLSQSADTEGSSDGSDGNT 179

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
             A + R+KRSREGTP   G+GKT+ Q   V     A+  K++     P SV+G  VGP+
Sbjct: 180 AGANKMRRKRSREGTPTTDGEGKTETQEGSVSKET-ASSRKIM--PATPASVAGNLVGPI 236

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
           +S GM T LELRN   ++ KA+ TS PQPCAV+P E W+QNERELKRERRKQSNRESARR
Sbjct: 237 VSSGMTTALELRNPSTVHSKANNTSAPQPCAVVPSEAWLQNERELKRERRKQSNRESARR 296

Query: 297 SRLRKQVK 304
           SRLRKQ +
Sbjct: 297 SRLRKQAE 304

Source: Psophocarpus tetragonolobus

Species: Psophocarpus tetragonolobus

Genus: Psophocarpus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560615|ref|XP_003548586.1| PREDICTED: common plant regulatory factor 1 [Glycine max]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/309 (63%), Positives = 233/309 (75%), Gaps = 9/309 (2%)

Query: 1   MGNNEDGKSFKSEKPSSPPPS----DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASG 56
           MGN+E+ KS K+  PSS P +    +Q NIH+Y DWAAMQ YYGPRV IPPY+NS +ASG
Sbjct: 1   MGNSEEEKSVKTGSPSSSPATTEQTNQPNIHVYPDWAAMQ-YYGPRVNIPPYFNSAVASG 59

Query: 57  HAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNT 116
           HAP PYMWGP QPMM PYG PYAA YS GGVY HPAV +G H+H  GVP+SPAA TP + 
Sbjct: 60  HAPHPYMWGPPQPMMQPYGPPYAAFYSHGGVYTHPAVAIGPHSHGQGVPSSPAAGTPSSV 119

Query: 117 EAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGN 175
           E+PTK SGN ++GL KKLKG D LAMSIGN +AESAE GAE R SQS + +GS+DGSDGN
Sbjct: 120 ESPTKFSGNTNQGLVKKLKGFDELAMSIGNCNAESAERGAENRLSQSVDTEGSSDGSDGN 179

Query: 176 TVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGP 235
           T  A Q+++KRSREGTPI   +GKT++Q+ P      ++   V AT   P SV+G  VGP
Sbjct: 180 TAGANQTKRKRSREGTPITDAEGKTELQNGPASKETASSKKIVSAT---PASVAGTLVGP 236

Query: 236 VLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESAR 295
           V+S GM T LELRN   ++ KA+ TS  QPCAV+  ETW+QNERELKRERRKQSNRESAR
Sbjct: 237 VVSSGMATALELRNPSTVHSKANSTSAAQPCAVVRNETWLQNERELKRERRKQSNRESAR 296

Query: 296 RSRLRKQVK 304
           RSRLRKQ +
Sbjct: 297 RSRLRKQAE 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489695|ref|XP_002279966.2| PREDICTED: common plant regulatory factor 1-like [Vitis vinifera] gi|297745388|emb|CBI40468.3| unnamed protein product [Vitis vinifera]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/311 (69%), Positives = 244/311 (78%), Gaps = 7/311 (2%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQ 60
           MGN E+GKS K EKP+SPPP DQ NIH+Y DWAAMQAYYGPRV +PPYYNS +ASGHAP 
Sbjct: 1   MGNEEEGKSPKPEKPTSPPPPDQANIHVYPDWAAMQAYYGPRVTLPPYYNSAMASGHAPH 60

Query: 61  PYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPA-----AVTPLN 115
           PY+WGP QPMMPPYG PYAAIYS GGVY HPAVPLGSH+H HGV +SP      A  PL+
Sbjct: 61  PYIWGPPQPMMPPYGPPYAAIYSPGGVYPHPAVPLGSHSHGHGVQSSPVVSEALAAPPLS 120

Query: 116 TEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDG 174
            E P KSSGN DRGL KKLKG DGLAMSIGN + ES EGG++   SQS E +GS+DGSDG
Sbjct: 121 IETPAKSSGNTDRGLMKKLKGFDGLAMSIGNGNGESTEGGSDHGLSQSGETEGSSDGSDG 180

Query: 175 NTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVG-VNATPDKVLATAVAPTSVSGKPV 233
           NT  A Q+R+KRSREGTP  GGDGKT+ Q+T  P   VNA  DKVL  AV PTSV+GK  
Sbjct: 181 NTAGADQTRRKRSREGTPPIGGDGKTETQATSAPSAEVNAGSDKVLGVAVPPTSVTGKLA 240

Query: 234 GPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRES 293
           G VLSP M T LELRN P +N K SP+S+PQP A++P +TWI NERE+KRERRKQSNRES
Sbjct: 241 GAVLSPRMSTALELRNPPSVNAKTSPSSIPQPGAMVPSDTWILNEREIKRERRKQSNRES 300

Query: 294 ARRSRLRKQVK 304
           ARRSRLRKQ +
Sbjct: 301 ARRSRLRKQAE 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169959|gb|AAB00097.1| G-box binding factor, partial [Glycine max]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/308 (63%), Positives = 232/308 (75%), Gaps = 9/308 (2%)

Query: 2   GNNEDGKSFKSEKPSSPPPS----DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           GN+E+ KS K+  PSS P +    +Q NIH+Y DWAAMQ YYGPRV IPPY+NS +ASGH
Sbjct: 1   GNSEEEKSVKTGSPSSSPATTEQTNQPNIHVYPDWAAMQ-YYGPRVNIPPYFNSAVASGH 59

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
           AP PYMWGP QPMM PYG PYAA YS GGVY HPAV +G H+H  GVP+SPAA TP + E
Sbjct: 60  APHPYMWGPPQPMMQPYGPPYAAFYSHGGVYTHPAVAIGPHSHGQGVPSSPAAGTPSSVE 119

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
           +PTK SGN ++GL KKLKG D LAMSIGN +AESAE GAE R SQS + +GS+DGSDGNT
Sbjct: 120 SPTKFSGNTNQGLVKKLKGFDELAMSIGNCNAESAERGAENRLSQSVDTEGSSDGSDGNT 179

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
             A Q+++KRSREGTPI   +GKT++Q+ P      ++   V AT   P SV+G  VGPV
Sbjct: 180 AGANQTKRKRSREGTPITDAEGKTELQNGPASKETASSKKIVSAT---PASVAGTLVGPV 236

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
           +S GM T LELRN   ++ KA+ TS  QPCAV+  ETW+QNERELKRERRKQSNRESARR
Sbjct: 237 VSSGMATALELRNPSTVHSKANSTSAAQPCAVVRNETWLQNERELKRERRKQSNRESARR 296

Query: 297 SRLRKQVK 304
           SRLRKQ +
Sbjct: 297 SRLRKQAE 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
TAIR|locus:2124938	360	GBF2 "G-box binding factor 2"	0.746	0.630	0.377	6.8e-49
TAIR|locus:2063020	382	GBF3 "G-box binding factor 3"	0.875	0.696	0.369	1.2e-35
TAIR|locus:2062455	409	bZIP16 "basic region/leucine z	0.861	0.640	0.290	2.9e-21
TAIR|locus:2031705	389	bZIP68 "basic region/leucine z	0.444	0.347	0.360	1.9e-20
TAIR|locus:2115250	315	GBF1 "G-box binding factor 1"	0.424	0.409	0.333	1.9e-16

TAIR|locus:2124938 GBF2 "G-box binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
 Identities = 88/233 (37%), Positives = 113/233 (48%)

Query:     1 MGNNEDGXXXXXXXXXXXXXX-DQGNIHMYT-DWAAMQAYYGPRVAIPPYYNSPIASGHA 58
             MG+NE+G               +Q N+H+Y  DWAAMQAYYGPRV IP YYNS +A GHA
Sbjct:     1 MGSNEEGNPTNNSDKPSQAAAPEQSNVHVYHHDWAAMQAYYGPRVGIPQYYNSNLAPGHA 60

Query:    59 PQPYMWXXXXXXXXXXXXXXXXIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEA 118
             P PYMW                    GGVYAHP V +GS        ++    TPL  +A
Sbjct:    61 PPPYMWASPSPMMAPYGAPYPPFCPPGGVYAHPGVQMGSQPQGPVSQSASGVTTPLTIDA 120

Query:   119 PTKSSGNXXXXXXXXXXXXXXXXMXXXXXXXXXXXXXXXQ-RPSQS-EADGSTDGSDGNT 176
             P  S+GN                M               + R SQS E DGS++GSDGNT
Sbjct:   121 PANSAGNSDHGFMKKLKEFDGLAMSISNNKVGSAEHSSSEHRSSQSSENDGSSNGSDGNT 180

Query:   177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVS 229
                 QSR+KR ++ +P + G+  +   S P+  G N  PD  + T V PT++S
Sbjct:   181 TGGEQSRRKRRQQRSP-STGERPSSQNSLPLR-GENEKPDVTMGTPVMPTAMS 231

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009637 "response to blue light" evidence=IDA

TAIR|locus:2063020 GBF3 "G-box binding factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 106/287 (36%), Positives = 138/287 (48%)

Query:    22 DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIA-SGHAPQPYMWXXXXXXXXXXXXXXXX 80
             DQ N+H+Y DWAAMQAYYGPRVA+PPYYNS +A SGH P PYMW                
Sbjct:    23 DQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAMAASGHPPPPYMWNPQHMMSPYGAPYAAV 82

Query:    81 IYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNXXXXXXXXXXXXXXX 140
                 GGVYAHP +P+GS       P      T L+ + PTKS+GN               
Sbjct:    83 YPHGGGVYAHPGIPMGSLPQGQKDPPLTTPGTLLSIDTPTKSTGNTDNGLMKKLKEFDGL 142

Query:   141 XMXXXXXXXXXXXXXXXQRPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDGKT 200
              M               +  + SE DGSTDGSDGNT  A + + KRSREGTP    DGK 
Sbjct:   143 AMSLGNGNPENGADEHKRSRNSSETDGSTDGSDGNTTGADEPKLKRSREGTPTK--DGKQ 200

Query:   201 DIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPGMNVKASPT 260
              +Q++       ++ D    T V    + G   G +LSPG+       + P M+   S  
Sbjct:   201 LVQASSFHSVSPSSGD----TGVK--LIQGS--GAILSPGVSAN----SNPFMS--QSLA 246

Query:   261 SVPQPCAVLPPETWIQNER--ELKRERRKQSN-RESARRSRLRKQVK 304
              VP P   L  E  ++ ER  +  RE  ++S  R+ A    L ++V+
Sbjct:   247 MVP-PETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVE 292

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2062455 bZIP16 "basic region/leucine zipper transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.9e-21, P = 2.9e-21
 Identities = 87/299 (29%), Positives = 122/299 (40%)

Query:    31 DWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWXXXXXXXXXXX--XXXXXIYSTGGVY 88
             DW+  QAY  P   +PP +   +AS   P PYMW                  +Y  GG+Y
Sbjct:    43 DWSGFQAY-SP---MPPPHGY-VASSPQPHPYMWGVQHMMPPYGTPPHPYVAMYPPGGMY 97

Query:    89 AHPAVPLGSHAHNHGVPTSPAAVTPL--NTEAPTKSSGNXXXXXXXXXXXXXXXXMXXXX 146
             AHP++P GS+ ++     SP  +T +  NT   T                     +    
Sbjct:    98 AHPSMPPGSYPYSPYAMPSPNGMTEVSGNTTGGTDGDAKQSEVKEKLPIKRSRGSLGSLN 157

Query:   147 XXXX----------XXXXXXXQRPSQSEADGSTDGSDGNTVR-AGQSRKKRSREGTPIAG 195
                                   +  +S +DGS++GSDGN+   +G     +  E     G
Sbjct:   158 MITGKNNEPGKNSGASANGAYSKSGESASDGSSEGSDGNSQNDSGSGLDGKDAEAASENG 217

Query:   196 GDG---KTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPG 252
             G     +     TP+       P   +  A  P   +   +G     G PT   +   PG
Sbjct:   218 GSANGPQNGSAGTPILPVSQTVPIMPMTAAGVPGPPTNLNIGMDYW-GAPTSAGI---PG 273

Query:   253 MNVKASPTSVPQPCAVLP-------PETWIQNERELKRERRKQSNRESARRSRLRKQVK 304
             M+ K S    P P  V P        + W+Q++RELKR+RRKQSNRESARRSRLRKQ +
Sbjct:   274 MHGKVS---TPVPGVVAPGSRDGGHSQPWLQDDRELKRQRRKQSNRESARRSRLRKQAE 329

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0006473 "protein acetylation" evidence=RCA

TAIR|locus:2031705 bZIP68 "basic region/leucine zipper transcription factor 68" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
 Identities = 53/147 (36%), Positives = 77/147 (52%)

Query:   159 RPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKV 218
             + ++S +DGS+DGSD N+     SR    ++G   +   G       P   G N   ++ 
Sbjct:   184 KSAESGSDGSSDGSDANSQNDSGSRHN-GKDGETASESGGSAH---GPPRNGSNLPVNQT 239

Query:   219 LATAVAPTSVSGKPVGPV-LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQN 277
             +A  + P S +G P  P  L+ GM    +  +  G NV  +   V    +   P   + +
Sbjct:   240 VA--IMPVSATGVPGPPTNLNIGM----DYWSGHG-NVSGAVPGVVVDGSQSQPWLQVSD 292

Query:   278 ERELKRERRKQSNRESARRSRLRKQVK 304
             ERE+KR+RRKQSNRESARRSRLRKQ +
Sbjct:   293 EREIKRQRRKQSNRESARRSRLRKQAE 319

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006473 "protein acetylation" evidence=RCA

TAIR|locus:2115250 GBF1 "G-box binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
 Identities = 50/150 (33%), Positives = 73/150 (48%)

Query:   159 RPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPD-- 216
             + S+  +    +G D     +G      S E    AG   + D  +     G    P   
Sbjct:   114 KKSKGNSKKKAEGGDKALSGSGNDGASHSDESVT-AGSSDENDENANQQEQGSIRKPSFG 172

Query:   217 KVLATAVAPTSVSGKPVGPV-LSPGMP-TKLELRNAPGMNVKASPTSVPQPCAVLPPETW 274
             ++LA A +  S +G+  G V + P  P T L +    GM++ +S   VP           
Sbjct:   173 QMLADA-SSQSTTGEIQGSVPMKPVAPGTNLNI----GMDLWSSQAGVP----------- 216

Query:   275 IQNERELKRERRKQSNRESARRSRLRKQVK 304
             +++ERELKR++RKQSNRESARRSRLRKQ +
Sbjct:   217 VKDERELKRQKRKQSNRESARRSRLRKQAE 246

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IEP

GO:0090342 "regulation of cell aging" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42776	GBF3_ARATH	No assigned EC number	0.5405	0.8848	0.7041	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	304
pfam07777	189	pfam07777, MFMR, G-box binding protein MFMR	2e-52
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	3e-11
smart00338	65	smart00338, BRLZ, basic region leucin zipper	3e-11
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	1e-04
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	0.001

>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR

 Score =  170 bits (431), Expect = 2e-52
 Identities = 95/187 (50%), Positives = 114/187 (60%), Gaps = 13/187 (6%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQ 60
           MG++E+GK  KS  P +    D     +Y DW+AMQAYYGPR   PPY+NS +AS   P 
Sbjct: 1   MGSSEEGKPSKS-SPKTSVQEDTPTPTVYPDWSAMQAYYGPRPP-PPYFNSSVASSPQPH 58

Query: 61  PYMWGPAQPMMPPYGAP--YAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAA--VTPLNT 116
           PYMWGP QPMMPPYG P  YAA+Y  GGVYAHP++P GSH  +     S      TPL+ 
Sbjct: 59  PYMWGPQQPMMPPYGTPPPYAAMYPPGGVYAHPSMPPGSHPFSPYAMPSAEVPGSTPLSM 118

Query: 117 EAPTKSSGNADRGLAKKLKGLD---GLAMSIGNASAESAEGG-AEQRPSQSE---ADGST 169
           E   KSS N D+G  KK KG D   GLAMS  N  +  A G  A    SQS    +DGS+
Sbjct: 119 ETDAKSSDNKDKGSIKKSKGSDGSLGLAMSGKNGESGKASGSSANGGSSQSSESGSDGSS 178

Query: 170 DGSDGNT 176
           +GSDGN+
Sbjct: 179 EGSDGNS 185

This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain), whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C, classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals. Length = 189

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 20/25 (80%), Positives = 24/25 (96%)

Query: 278 ERELKRERRKQSNRESARRSRLRKQ 302
           E+ELKRERR+Q NRE+ARRSRLRK+
Sbjct: 1   EKELKRERRRQKNREAARRSRLRKK 25

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 278 ERELKRERRKQSNRESARRSRLRKQVK 304
           E + KR RR++ NRE+ARRSR RK+ +
Sbjct: 1   EEDEKRRRRRERNREAARRSRERKKAE 27

Length = 65

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 281 LKRERRKQSNRESARRSRLRKQVK 304
             R R++  NRE+ARRSR RK  +
Sbjct: 1   DPRARKRARNREAARRSRARKMER 24

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)

Query: 280 ELKRERRKQSNRESARRSRLRKQVK 304
           +  R+RR++ N E+ARRSR +K+ +
Sbjct: 3   DEYRDRRRR-NNEAARRSREKKKQR 26

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
PF07777	189	MFMR: G-box binding protein MFMR; InterPro: IPR012	100.0
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	96.96
smart00338	65	BRLZ basic region leucin zipper.	96.89
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	96.21
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	93.11
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	92.8
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	91.14
KOG2236	483	consensus Uncharacterized conserved protein [Funct	81.02

>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain

Probab=100.00  E-value=2.9e-74  Score=512.30  Aligned_cols=179  Identities=60%  Similarity=1.043  Sum_probs=168.5

Q ss_pred             CCCCCCCCCcCCCCCCCCCCCCCCCcCcCCchhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC--c
Q 021987            1 MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAP--Y   78 (304)
Q Consensus         1 MG~~E~~~~~K~~K~ss~~~~eq~~~~vyPDWsamQAYYgp~v~~Pp~f~s~VAs~p~pHPYMWGp~QpmmPPYGtP--Y   78 (304)
                      ||++|++|++|++|++++++++|+++|+||||++||||||+| ++|+||++.||++|++||||||+|||||||||||  |
T Consensus         1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~pY   79 (189)
T PF07777_consen    1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWSAMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVPY   79 (189)
T ss_pred             CCCccCCcCCCCCCCCCCCcCCCCCCccCCccHhhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCCC
Confidence            999999999999999887655899999999999999999999 8899999999999999999999999999999997  9


Q ss_pred             cccccCCccccCCCCCCCCCCCCCCCCCCCC--CCCCCCccC-CCCCCCCcccchhhhhcccC-CcccccCCCCCCCCCC
Q 021987           79 AAIYSTGGVYAHPAVPLGSHAHNHGVPTSPA--AVTPLNTEA-PTKSSGNADRGLAKKLKGLD-GLAMSIGNASAESAEG  154 (304)
Q Consensus        79 ~AmYp~GGvYAHP~mp~gs~p~~~~~~~sp~--~~tp~s~e~-~~Kss~~kdk~~~Kk~Kg~~-Glams~G~g~~~~~~g  154 (304)
                      +||||||||||||+||+++|||+++.+++..  ++|++++|+ ++|++++|||+++||||||| ||+|++||++.+|+++
T Consensus        80 ~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~~  159 (189)
T PF07777_consen   80 PAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTSG  159 (189)
T ss_pred             ccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCcccc
Confidence            9999999999999999999999999999854  479999999 69999999999999999999 6999999999999998


Q ss_pred             C-CCCCCCCc---CCCCCCCCCCCCccccc
Q 021987          155 G-AEQRPSQS---EADGSTDGSDGNTVRAG  180 (304)
Q Consensus       155 ~-s~~~~SqS---esegSSdGSD~Ns~~~s  180 (304)
                      + +|++.|||   .+||||||||+|+++++
T Consensus       160 ~s~n~~~Sqs~eSgsegSSdgSD~Nt~~~~  189 (189)
T PF07777_consen  160 SSANDGSSQSSESGSEGSSDGSDGNTNNDS  189 (189)
T ss_pred             CCCCCccCccccccccccccCcCccccCCC
Confidence            4 58899997   47999999999999874

It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=96.96  E-value=0.00047  Score=51.34  Aligned_cols=26  Identities=65%  Similarity=0.887  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987          278 ERELKRERRKQSNRESARRSRLRKQV  303 (304)
Q Consensus       278 ~~~~~r~~r~~snresarrsr~rkq~  303 (304)
                      |.+.++++|++.||++|||+|.||++
T Consensus         1 e~~~k~~~rr~rNR~AAr~~R~RKk~   26 (64)
T PF00170_consen    1 EKEDKRERRRERNREAARRSRQRKKQ   26 (64)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            35678999999999999999999975

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>smart00338 BRLZ basic region leucin zipper

Probab=96.89  E-value=0.00061  Score=50.78  Aligned_cols=24  Identities=58%  Similarity=0.839  Sum_probs=21.9

Q ss_pred             HHHHHHHHhhhhHHHHHhHHhhhc
Q 021987          280 ELKRERRKQSNRESARRSRLRKQV  303 (304)
Q Consensus       280 ~~~r~~r~~snresarrsr~rkq~  303 (304)
                      +.|+.||+..||++|+++|.||++
T Consensus         3 ~~k~~rR~~rNR~aA~~~R~rKk~   26 (65)
T smart00338        3 DEKRRRRRERNREAARRSRERKKA   26 (65)
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHH
Confidence            568999999999999999999875

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=96.21  E-value=0.0036  Score=45.48  Aligned_cols=23  Identities=70%  Similarity=0.882  Sum_probs=20.1

Q ss_pred             HHHHHHHHhhhhHHHHHhHHhhhc
Q 021987          280 ELKRERRKQSNRESARRSRLRKQV  303 (304)
Q Consensus       280 ~~~r~~r~~snresarrsr~rkq~  303 (304)
                      +.++.||+ .||++|+|+|.||++
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~   25 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQ   25 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHH
Confidence            56678888 999999999999975

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=93.11  E-value=0.074  Score=54.39  Aligned_cols=28  Identities=50%  Similarity=0.601  Sum_probs=25.8

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987          276 QNERELKRERRKQSNRESARRSRLRKQV  303 (304)
Q Consensus       276 ~~~~~~~r~~r~~snresarrsr~rkq~  303 (304)
                      -+|+.|||.|||+.|.+||.-||.||+.
T Consensus       245 aEEriLKrvRRKIrNK~SAQESRrkKke  272 (472)
T KOG0709|consen  245 AEERILKRVRRKIRNKRSAQESRRKKKE  272 (472)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhHhh
Confidence            3789999999999999999999999974

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=92.80  E-value=0.17  Score=52.98  Aligned_cols=29  Identities=41%  Similarity=0.448  Sum_probs=25.7

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987          275 IQNERELKRERRKQSNRESARRSRLRKQV  303 (304)
Q Consensus       275 ~~~~~~~~r~~r~~snresarrsr~rkq~  303 (304)
                      ..|..-+||+.||+.|||||--||.||++
T Consensus       274 ~~d~kv~krqQRmIKNResA~~SRkKKKE  302 (655)
T KOG4343|consen  274 GSDIKVLKRQQRMIKNRESACQSRKKKKE  302 (655)
T ss_pred             ccCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35778899999999999999999999864

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=91.14  E-value=0.27  Score=39.28  Aligned_cols=28  Identities=39%  Similarity=0.459  Sum_probs=24.3

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987          276 QNERELKRERRKQSNRESARRSRLRKQV  303 (304)
Q Consensus       276 ~~~~~~~r~~r~~snresarrsr~rkq~  303 (304)
                      .+..++|..||...||..|+++|.||-.
T Consensus        24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~   51 (92)
T PF03131_consen   24 EQIAELKQRRRRLKNRGYAQNCRKRKLD   51 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3557889999999999999999999853

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG2236 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.02  E-value=2.1  Score=44.21  Aligned_cols=42  Identities=17%  Similarity=0.265  Sum_probs=24.4

Q ss_pred             chhhhhhhcCCCCCCC-CCCCCCCCCCCCCCCCccCCCCCCCCCCCC--CccccccC
Q 021987           31 DWAAMQAYYGPRVAIP-PYYNSPIASGHAPQPYMWGPAQPMMPPYGA--PYAAIYST   84 (304)
Q Consensus        31 DWsamQAYYgp~v~~P-p~f~s~VAs~p~pHPYMWGp~QpmmPPYGt--PY~AmYp~   84 (304)
                      -|-.+| ||+  -++| |+|+.+     ++||.+    +.+.+.||-  ||-+|||-
T Consensus       410 s~p~pq-~qN--yppp~p~f~m~-----~~hP~~----~~p~~~~g~~~P~~~mpp~  454 (483)
T KOG2236|consen  410 SGPSPQ-QQN--YPPPSPSFPMF-----QPHPPE----SNPPANFGQANPFNQMPPA  454 (483)
T ss_pred             CCCCcc-cCC--CCCCCCCCCcc-----CCCCCC----CCCcccccccCccccCCCC
Confidence            355555 333  1444 577543     677754    335566776  88778763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	304
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	2e-08
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	4e-07
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	5e-06
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	8e-06
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	9e-06
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	4e-05
2wt7_B	90	Transcription factor MAFB; transcription, transcri	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 282 KRERRKQSNRESARRSRLRKQ 302
           KRE R   NRE+AR SR +K+
Sbjct: 1   KREVRLMKNREAARESRRKKK 21

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 6/24 (25%), Positives = 16/24 (66%)

Query: 281 LKRERRKQSNRESARRSRLRKQVK 304
           +K+ ++ + N+ +A R R +K+ +
Sbjct: 1   MKKLKKMEQNKTAATRYRQKKRAE 24

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 282 KRERRKQSNRESARRSRLRKQVK 304
           KR +  + NR +A RSR +++V 
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVW 23

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 42.0 bits (99), Expect = 8e-06
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 282 KRERRKQSNRESARRSRLRKQVK 304
           K ER++  NR +A +SR RK  +
Sbjct: 1   KAERKRMRNRIAASKSRKRKLER 23

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 41.7 bits (98), Expect = 9e-06
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 282 KRERRKQSNRESARRSRLRKQVK 304
           KR  R++ N+ +A + R R++  
Sbjct: 2   KRRIRRERNKMAAAKCRNRRREL 24

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 278 ERELKRERRKQSNRESARRSRLRKQVK 304
             +LK+ RR   NR  A   R+++  +
Sbjct: 33  IIQLKQRRRTLKNRGYAASCRVKRVTQ 59

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 4/33 (12%)

Query: 269 LPPETWIQNERELKRERRKQSNRESARRSRLRK 301
              +        LK++RR   NR  A+  R ++
Sbjct: 18  FTKDE----VIRLKQKRRTLKNRGYAQSCRYKR 46

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 13/110 (11%), Positives = 25/110 (22%), Gaps = 4/110 (3%)

Query: 15  PSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPY 74
             +  P  Q    M     A       ++ +PP    P             PAQ  +   
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT----PAQEQLHQQ 72

Query: 75  GAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSG 124
                   +   ++  P V   ++            +          + G
Sbjct: 73  IDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	98.14
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	97.16
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	97.08
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	96.64
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	96.03
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	95.84
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	93.71
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	82.98

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=98.14  E-value=6.9e-07  Score=65.10  Aligned_cols=22  Identities=55%  Similarity=0.638  Sum_probs=20.7

Q ss_pred             HHHHHHhhhhHHHHHhHHhhhc
Q 021987          282 KRERRKQSNRESARRSRLRKQV  303 (304)
Q Consensus       282 ~r~~r~~snresarrsr~rkq~  303 (304)
                      ||+||+++|||||+|||.||++
T Consensus         1 kr~rR~~~NResA~rSR~RKk~   22 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKE   22 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHhhHHHHHHHHHHHHH
Confidence            5899999999999999999986

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=97.16  E-value=0.00011  Score=54.83  Aligned_cols=24  Identities=54%  Similarity=0.709  Sum_probs=16.6

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhHHhhhcC
Q 021987          277 NERELKRERRKQSNRESARRSRLRKQVK  304 (304)
Q Consensus       277 ~~~~~~r~~r~~snresarrsr~rkq~~  304 (304)
                      |+.+.||+|    |||+|||||.|||++
T Consensus         8 d~~~~KR~r----NreAArrsR~RK~~~   31 (63)
T 2dgc_A            8 DPAALKRAR----NTEAARRSRARKLQR   31 (63)
T ss_dssp             ---CHHHHH----HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHH----hHHHHHHHHHHHHHH
Confidence            444444444    999999999999863

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=97.08  E-value=0.00021  Score=52.75  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=21.2

Q ss_pred             HHHHHHHhhhhHHHHHhHHhhhc
Q 021987          281 LKRERRKQSNRESARRSRLRKQV  303 (304)
Q Consensus       281 ~~r~~r~~snresarrsr~rkq~  303 (304)
                      +||+||++.||++|+|+|.||++
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~   23 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRE   23 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHH
Confidence            37999999999999999999985

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=96.64  E-value=0.00097  Score=54.74  Aligned_cols=29  Identities=28%  Similarity=0.370  Sum_probs=26.5

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987          275 IQNERELKRERRKQSNRESARRSRLRKQV  303 (304)
Q Consensus       275 ~~~~~~~~r~~r~~snresarrsr~rkq~  303 (304)
                      ..+..++|.+||+++||+.|+++|.||++
T Consensus        30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~   58 (107)
T 3a5t_A           30 KEEIIQLKQRRRTLKNRGYAASCRVKRVT   58 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            45779999999999999999999999975

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=96.03  E-value=0.0026  Score=46.60  Aligned_cols=22  Identities=45%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             HHHHHHhhhhHHHHHhHHhhhc
Q 021987          282 KRERRKQSNRESARRSRLRKQV  303 (304)
Q Consensus       282 ~r~~r~~snresarrsr~rkq~  303 (304)
                      |++||++.||++|+|+|.||++
T Consensus         1 K~errr~rNr~AA~k~R~rKk~   22 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLE   22 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHH
Confidence            4678888899999999999975

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=95.84  E-value=0.0035  Score=45.69  Aligned_cols=22  Identities=41%  Similarity=0.596  Sum_probs=20.3

Q ss_pred             HHHHHHhhhhHHHHHhHHhhhc
Q 021987          282 KRERRKQSNRESARRSRLRKQV  303 (304)
Q Consensus       282 ~r~~r~~snresarrsr~rkq~  303 (304)
                      ||+||.+.||++|+|+|.||++
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~   22 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKV   22 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHH
Confidence            5899999999999999999975

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=93.71  E-value=0.015  Score=42.95  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=15.0

Q ss_pred             HHHHHHHhhhhHHHHHhHHhhhc
Q 021987          281 LKRERRKQSNRESARRSRLRKQV  303 (304)
Q Consensus       281 ~~r~~r~~snresarrsr~rkq~  303 (304)
                      +|++|+++.||..|+|+|.||.+
T Consensus         1 ~k~~rKr~rNr~AA~R~R~KKk~   23 (63)
T 1ci6_A            1 MKKLKKMEQNKTAATRYRQKKRA   23 (63)
T ss_dssp             -------CCHHHHHHHHHHHHHH
T ss_pred             CchHhHHHHhHHHHHHHHHHHHH
Confidence            47899999999999999999875

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=82.98  E-value=0.53  Score=35.76  Aligned_cols=20  Identities=40%  Similarity=0.514  Sum_probs=18.5

Q ss_pred             HHHHhhhhHHHHHhHHhhhc
Q 021987          284 ERRKQSNRESARRSRLRKQV  303 (304)
Q Consensus       284 ~~r~~snresarrsr~rkq~  303 (304)
                      .||+..||+++|..|.||++
T Consensus        10 ~kR~~qNR~AQRafReRK~~   29 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKED   29 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00