Citrus Sinensis ID: 022000

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDVVVWNPWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELSLVHSS
ccccccccccccEEEEEEcccccEEEEEEcccccEEEEEcccEEEEEEEEccccEEEEEcccccccccccccccccEEEEccccccccccccEEEcccEEEEccccccccccccccEEEEEEccccHHHHcccccccEEEEEEEEcccccEEEEEEEEcccccEEEEEEEccEEEEEccccccEEEcccccccccccccccccccccccEEccccccEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccccccccccccccccEEEEEcccccccEEEccccEEEEEEEEEEEEcc
ccccHHHHcccccEEEEEccccccEEEEEcccccEEEEEEEccEEEEEcccccccEEEEcccccccccccEEccccccccccccccccccccccccccEEEEccccccccccccccEEEEEEEcccHcccccccccEEEEEEEEEccccEEEEEEEEEEcccccEEEEHHHHHHEEcccccEEEEEcccccHHHHcccccccEcccccEEEEcccccEEEEccccEEEEEccccccEEEEEEcccccEEEEccHHHHHHHHcccccccccEEEEEEEccccccEEEcccccEEEEEEEEEEccc
mkdsgaasdhRAAVEvtkdrngieqvvlrnprgasakislhggqalswRTERGEELLFTstkaifkpphavrggipicfpqfgnrgsleqhgfarnrswviddnppplkpsdsqgkVYVDLLlkpseedlkiwphSFEFRLRVSLAADGNLALISRirninckpfsfsIAYHTYFAISDISEVRIEGLETLDYLDNLCqrerfteqgdaltfeSEIDrvylsssdkiaildherKRTFvihkeglpdvvvwnpwerksksmadfgdEEYRHMLCVdgaaiekpitlkpgeewtgrLELSLVHSS
mkdsgaasdhraavevtkdrngieqvvlrnprgasakislhggqalswRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNppplkpsdsqGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFteqgdaltfeseidrvylsssdkiaildhERKRtfvihkeglpdvvvwnpwerKSKSMADFGDEEYRHMLCVDGAAiekpitlkpgeewtgrlelslvhss
MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDVVVWNPWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELSLVHSS
**************************V**********ISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVI**************KVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDVVVWNPWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRL********
***************VTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDVVVWNPWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELSLVHS*
*************VEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDVVVWNPWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELSLVHSS
**DSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDVVVWNPWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELSLVH**
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MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDVVVWNPWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELSLVHSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query304 2.2.26 [Sep-21-2011]
Q40784329 Putative glucose-6-phosph N/A no 0.950 0.878 0.671 1e-118
Q03161297 Glucose-6-phosphate 1-epi yes no 0.845 0.865 0.325 2e-32
P39173294 Putative glucose-6-phosph N/A no 0.796 0.823 0.317 1e-27
P44160271 Putative glucose-6-phosph yes no 0.628 0.704 0.274 2e-16
>sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1 Back     alignment and function desciption
 Score =  425 bits (1092), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 196/292 (67%), Positives = 242/292 (82%), Gaps = 3/292 (1%)

Query: 15  EVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGG 74
           E+ K  +G+E+VVLR  R   A+I L+GGQ  SW+ + GEELLF S+KAIFKPP A+RGG
Sbjct: 25  ELVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKNDNGEELLFLSSKAIFKPPKAIRGG 84

Query: 75  IPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWP 134
           IPIC PQFG  G+LEQHGFARNR W ID++PPPL P +   K +VDL+L+P+EEDLKIWP
Sbjct: 85  IPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPL-PVNPAIKAFVDLILRPAEEDLKIWP 143

Query: 135 HSFEFRLRVSLAADGNLALISRIRNINC--KPFSFSIAYHTYFAISDISEVRIEGLETLD 192
           HSFEFRLRV+L   G+L+L SRIRN N   +PFS++ AYHTYF +SDISEVR+EGLET+D
Sbjct: 144 HSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFVSDISEVRVEGLETMD 203

Query: 193 YLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDVVVWN 252
           YLDNL  +ERFTEQGDA+ FESE+D+VYL++  KIAI+DHE+K+TFV+ KEGLPD VVWN
Sbjct: 204 YLDNLKAKERFTEQGDAIVFESEVDKVYLAAPSKIAIIDHEKKKTFVVTKEGLPDAVVWN 263

Query: 253 PWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELSLVHSS 304
           PW++K+K+M DFGD EY++MLCV+ AA+EKPITLKPGEEW GR+ LS V SS
Sbjct: 264 PWDKKAKAMQDFGDAEYKNMLCVEPAAVEKPITLKPGEEWRGRIALSAVPSS 315

Cenchrus ciliaris (taxid: 35872)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5
>sp|Q03161|YMY9_YEAST Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR099C PE=1 SV=1 Back     alignment and function description
>sp|P39173|YEAD_ECOLI Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) GN=yeaD PE=1 SV=2 Back     alignment and function description
>sp|P44160|Y1317_HAEIN Putative glucose-6-phosphate 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1317 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
255537695305 aldose 1-epimerase, putative [Ricinus co 1.0 0.996 0.826 1e-152
225454434312 PREDICTED: putative glucose-6-phosphate 1.0 0.974 0.812 1e-146
255541784317 aldose 1-epimerase, putative [Ricinus co 1.0 0.958 0.812 1e-145
224058411306 predicted protein [Populus trichocarpa] 0.993 0.986 0.820 1e-144
357481487304 Apospory-associated protein C [Medicago 0.996 0.996 0.803 1e-144
449521465304 PREDICTED: putative glucose-6-phosphate 1.0 1.0 0.792 1e-144
388509736304 unknown [Medicago truncatula] 0.996 0.996 0.8 1e-143
449464082304 PREDICTED: putative glucose-6-phosphate 1.0 1.0 0.789 1e-143
147867253364 hypothetical protein VITISV_022854 [Viti 1.0 0.835 0.696 1e-139
356506036317 PREDICTED: putative glucose-6-phosphate 1.0 0.958 0.773 1e-139
>gi|255537695|ref|XP_002509914.1| aldose 1-epimerase, putative [Ricinus communis] gi|223549813|gb|EEF51301.1| aldose 1-epimerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 252/305 (82%), Positives = 281/305 (92%), Gaps = 1/305 (0%)

Query: 1   MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTS 60
           M  SGAA D +AAVEV KDRNGI+Q++LRNPRGASA++SLHGGQ LSW+T++GEELLFTS
Sbjct: 1   MNHSGAACDQKAAVEVIKDRNGIDQIILRNPRGASARVSLHGGQVLSWKTDQGEELLFTS 60

Query: 61  TK-AIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYV 119
           +K AIFKPPH VRGGIPICFPQFGNRGSLEQHGFAR + WVIDDNPPPL P++S GK YV
Sbjct: 61  SKQAIFKPPHPVRGGIPICFPQFGNRGSLEQHGFARKKIWVIDDNPPPLHPNESNGKAYV 120

Query: 120 DLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISD 179
           DLLLKPS++DLKIWPH FEFRLRVSLAADGNL L+SRIRN+NCKP +FSIAYHTYF+ISD
Sbjct: 121 DLLLKPSDDDLKIWPHCFEFRLRVSLAADGNLTLLSRIRNVNCKPLAFSIAYHTYFSISD 180

Query: 180 ISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFV 239
           ISEVR+EGLETLDYLDNLCQ+ERFTEQGD LTFESE+DRVYLSSS  +AI DHERKRTF+
Sbjct: 181 ISEVRVEGLETLDYLDNLCQKERFTEQGDTLTFESEVDRVYLSSSHVVAIFDHERKRTFL 240

Query: 240 IHKEGLPDVVVWNPWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELS 299
           + KEGLPDVVVWNPWE+K+KSM DFGDEEY+ MLCVDGAAIEKPITLKPGEEWTGRLELS
Sbjct: 241 VRKEGLPDVVVWNPWEKKAKSMVDFGDEEYKQMLCVDGAAIEKPITLKPGEEWTGRLELS 300

Query: 300 LVHSS 304
           +V SS
Sbjct: 301 VVPSS 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225454434|ref|XP_002280220.1| PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera] gi|297745389|emb|CBI40469.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255541784|ref|XP_002511956.1| aldose 1-epimerase, putative [Ricinus communis] gi|223549136|gb|EEF50625.1| aldose 1-epimerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224058411|ref|XP_002299496.1| predicted protein [Populus trichocarpa] gi|222846754|gb|EEE84301.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357481487|ref|XP_003611029.1| Apospory-associated protein C [Medicago truncatula] gi|355512364|gb|AES93987.1| Apospory-associated protein C [Medicago truncatula] Back     alignment and taxonomy information
>gi|449521465|ref|XP_004167750.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388509736|gb|AFK42934.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449464082|ref|XP_004149758.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147867253|emb|CAN81195.1| hypothetical protein VITISV_022854 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356506036|ref|XP_003521794.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
TAIR|locus:2128519306 AT4G23730 [Arabidopsis thalian 0.990 0.983 0.754 4.2e-127
TAIR|locus:2082842317 AT3G61610 [Arabidopsis thalian 0.973 0.933 0.760 8e-124
TAIR|locus:2165580312 AT5G57330 [Arabidopsis thalian 0.950 0.926 0.664 1.1e-108
TAIR|locus:2145748306 AT5G14500 [Arabidopsis thalian 0.947 0.941 0.594 2.9e-96
TAIR|locus:2084233306 AT3G01590 [Arabidopsis thalian 0.930 0.924 0.594 3.3e-95
TAIR|locus:2117572318 AT4G25900 [Arabidopsis thalian 0.957 0.915 0.513 3.4e-84
UNIPROTKB|Q9KQJ7296 VC_2001 "Putative uncharacteri 0.809 0.831 0.390 2.5e-42
TIGR_CMR|VC_2001296 VC_2001 "conserved hypothetica 0.809 0.831 0.390 2.5e-42
ASPGD|ASPL0000045178315 AN10222 [Emericella nidulans ( 0.891 0.860 0.351 2e-40
FB|FBgn0028540297 CG9008 [Drosophila melanogaste 0.888 0.909 0.317 1.2e-35
TAIR|locus:2128519 AT4G23730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
 Identities = 228/302 (75%), Positives = 264/302 (87%)

Query:     4 SGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKA 63
             SG   + R  V++ KDRNG +Q++L+NPRGAS KISLHGGQ LSW+T++G+ELLF STKA
Sbjct:     5 SGTGPEKRPTVDLVKDRNGTDQILLQNPRGASVKISLHGGQVLSWKTDKGDELLFNSTKA 64

Query:    64 IFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLL 123
               KPPH VRGGIPICFPQFG RGSLEQHGFARN+ W++++NPP L   DS GK YVDL+L
Sbjct:    65 NLKPPHPVRGGIPICFPQFGTRGSLEQHGFARNKMWLVENNPPALPSFDSTGKAYVDLVL 124

Query:   124 KPSEED-LKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISE 182
             K S+ED ++IWP+SFEF LRVSLA DGNL LISR+RNIN KPFSFSIAYHTYF+ISDISE
Sbjct:   125 KSSDEDTMRIWPYSFEFHLRVSLALDGNLTLISRVRNINSKPFSFSIAYHTYFSISDISE 184

Query:   183 VRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHK 242
             VR+EGLETLDYLDN+  RERFTEQGDALTFESEIDRVYL+S D +AI DHERKRTF+I K
Sbjct:   185 VRLEGLETLDYLDNMHDRERFTEQGDALTFESEIDRVYLNSKDVVAIFDHERKRTFLIKK 244

Query:   243 EGLPDVVVWNPWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELSLVH 302
             EGLPDVVVWNPWE+K++++ D GD+EYRHMLCVDGAAIEKPITLKPGEEWTG+L LSLV 
Sbjct:   245 EGLPDVVVWNPWEKKARALTDLGDDEYRHMLCVDGAAIEKPITLKPGEEWTGKLHLSLVL 304

Query:   303 SS 304
             S+
Sbjct:   305 ST 306
GO:0003824 "catalytic activity" evidence=IEA
GO:0004034 "aldose 1-epimerase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006012 "galactose metabolic process" evidence=ISS
GO:0016853 "isomerase activity" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
TAIR|locus:2082842 AT3G61610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165580 AT5G57330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145748 AT5G14500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084233 AT3G01590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117572 AT4G25900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQJ7 VC_2001 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2001 VC_2001 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
ASPGD|ASPL0000045178 AN10222 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
FB|FBgn0028540 CG9008 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40784AAPC_CENCI5, ., 1, ., 3, ., 1, 50.67120.95060.8784N/Ano
Q03161YMY9_YEAST5, ., 1, ., 3, ., 1, 50.32520.84530.8653yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.1.3.3LOW CONFIDENCE prediction!
3rd Layer5.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
cd09020269 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate 1e-120
pfam01263301 pfam01263, Aldose_epim, Aldose 1-epimerase 3e-72
COG0676287 COG0676, COG0676, Uncharacterized enzymes related 8e-69
cd09025271 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, 1e-25
cd01081284 cd01081, Aldose_epim, aldose 1-epimerase superfami 1e-15
cd09024288 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, sim 4e-13
COG2017308 COG2017, GalM, Galactose mutarotase and related en 2e-10
>gnl|CDD|185697 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like Back     alignment and domain information 
 Score =  345 bits (888), Expect = e-120
 Identities = 126/277 (45%), Positives = 166/277 (59%), Gaps = 12/277 (4%)

Query: 26  VVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNR 85
           +VL +P GASA+I+L G Q LSW+ + G++LL+ S +A F    A+RGGIP+C+P FG  
Sbjct: 2   IVLDHP-GASAEIALQGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPH 60

Query: 86  G---SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLR 142
           G    L  HGFAR R W + +       S+ +  V V L L  ++E   IWPH+FE RL 
Sbjct: 61  GPNADLPAHGFARTRLWELLEV------SEDEDGVTVSLELDDTDETRAIWPHAFELRLT 114

Query: 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRER 202
           V+L  D  L L   + N   KPFSF+ A HTYF +SDI +VR+EGLE   YLD L  +  
Sbjct: 115 VTLGFDT-LELELTVTNTGDKPFSFTAALHTYFRVSDIEQVRVEGLEGATYLDKLTDQRE 173

Query: 203 FTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDVVVWNPWERKSKSMA 262
              QG A+TF+ E+DRVYL++   + I D    R   I K G P  VVWNPW  K+  MA
Sbjct: 174 -KVQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSAVVWNPWIEKAARMA 232

Query: 263 DFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELS 299
           DF D+ YR M+CV+ A +  P+TL PGE  T    +S
Sbjct: 233 DFPDDGYRRMVCVEAANVADPVTLAPGESHTLSQTIS 269

D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P. Length = 269
>gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase Back     alignment and domain information
>gnl|CDD|223748 COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185702 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily Back     alignment and domain information
>gnl|CDD|185701 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>gnl|CDD|224928 COG2017, GalM, Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 304
KOG1594305 consensus Uncharacterized enzymes related to aldos 100.0
cd09020269 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase- 100.0
COG0676287 Uncharacterized enzymes related to aldose 1-epimer 100.0
cd09025271 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to 100.0
cd09024288 Aldose_epim_lacX Aldose 1-epimerase, similar to La 100.0
cd09021273 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to 100.0
PRK15172300 putative aldose-1-epimerase; Provisional 100.0
cd01081284 Aldose_epim aldose 1-epimerase superfamily. Aldose 100.0
cd09022284 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to 100.0
PF01263300 Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 100.0
cd09019326 galactose_mutarotase_like galactose mutarotase_lik 100.0
COG2017308 GalM Galactose mutarotase and related enzymes [Car 100.0
TIGR02636335 galM_Leloir galactose mutarotase. Members of this 100.0
PLN00194337 aldose 1-epimerase; Provisional 100.0
PRK11055342 galM galactose-1-epimerase; Provisional 100.0
PTZ00485376 aldolase 1-epimerase; Provisional 99.97
KOG1604353 consensus Predicted mutarotase [Carbohydrate trans 99.93
cd09023284 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t 99.85
PF14486302 DUF4432: Domain of unknown function (DUF4432); PDB 99.45
cd09269293 deoxyribose_mutarotase deoxyribose mutarotase_like 99.3
PF14315274 DUF4380: Domain of unknown function (DUF4380) 97.68
PF14849270 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_ 93.59
TIGR03593366 yidC_nterm membrane protein insertase, YidC/Oxa1 f 92.87
PRK01318 521 membrane protein insertase; Provisional 88.97
PF09095278 DUF1926: Domain of unknown function (DUF1926); Int 86.0
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-65  Score=433.72  Aligned_cols=300  Identities=69%  Similarity=1.181  Sum_probs=277.7

Q ss_pred             CCCCCCCCCccceEEEEecCCCceEEEEeCCCccEEEEeCCCcEEEEEEeCCCEEEEEcCCCCcCCCCCcccCcceEEcc
Q 022000            1 MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFP   80 (304)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~L~n~~~~~~~v~~~Ga~l~s~~~~~g~e~l~~~~~~~~~~~~~~rgG~p~lfP   80 (304)
                      |+++..--..+..++..++.+|++.|+|.++++.+++|.+|||+|+||+...|+|+||.+..+.+++.+|||||+|+|||
T Consensus         1 ~~~~~~~~~~~~~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FP   80 (305)
T KOG1594|consen    1 MGRSSAMASERMPVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFP   80 (305)
T ss_pred             CccccccccccccceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEee
Confidence            44444444456778889999999999999999999999999999999998778999999999999999999999999999


Q ss_pred             ccCCCCCCCCceeEeecceEEeeCCCCCCCCCCCCceEEEEEecCCcchhccCCcceEEEEEEEEccCCcEEEEEEEEeC
Q 022000           81 QFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNI  160 (304)
Q Consensus        81 ~~gr~~~~~~HG~~~~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~~~~L~~~~~v~N~  160 (304)
                      +||..+.+++|||||++.|+++....+.|   ..+.+.|.|.|.+++++++.||+.|++++++.|.+ +.|+++..|+|+
T Consensus        81 QFG~~g~l~qHGFaRn~~W~v~~~p~~lp---~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~-g~Lt~~~rV~Nt  156 (305)
T KOG1594|consen   81 QFGNFGSLPQHGFARNRFWEVENNPPPLP---SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGD-GELTLTSRVRNT  156 (305)
T ss_pred             ccCCCCcccccccccceeeEeccCCCCCC---cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcC-CceEEEEEeecC
Confidence            99999999999999999999998764433   22357899999999999999999999999999997 789999999999


Q ss_pred             CCCcEeEeeecccceecCCcceEEEecCCCCcceecccccceeeecCceeeecCCcceEEcCCCCeEEEEeCCCCcEEEE
Q 022000          161 NCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVI  240 (304)
Q Consensus       161 ~~~~~p~~~g~HpyF~~~~~~~l~~~gl~~~~~ld~~~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~~~~~g~~i~i  240 (304)
                      +++|+.|++++|+||+++++.+++++||.+.+|+|++.....++++++.++|.+++|++|++.+.+..|.|.+.+|+|.|
T Consensus       157 d~KpFsF~~alHtYf~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI~dh~~krti~l  236 (305)
T KOG1594|consen  157 DSKPFSFSFALHTYFRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAIFDHEKKRTIVL  236 (305)
T ss_pred             CCCceEEEeEeeeeEeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEEEEeccccEEEE
Confidence            99999999999999999999999999999999999988878888889999999999999999999999999999999999


Q ss_pred             EecCCCcEEEeCCccccccccCCCCCCCcCcEEEeccCccCCCeEeCCCCEEEEEEEEEEEeCC
Q 022000          241 HKEGLPDVVVWNPWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELSLVHSS  304 (304)
Q Consensus       241 ~~~~~~~~vvwtp~~~~~~~~~d~~~~~~~~~vCiEp~~~~~~~~L~pGe~~~~~~~i~~~~~~  304 (304)
                      ...|+|+.||||||.+++++|+||++++|++|+|||+...+.+++|+|||+|++.+.+++.++|
T Consensus       237 ~k~g~pDaVVWNPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~Lsiv~s~  300 (305)
T KOG1594|consen  237 KKEGLPDAVVWNPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQLLSIVPSS  300 (305)
T ss_pred             eccCCCceEEeChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEEEEEeecc
Confidence            9999999999999999999999999999999999999999999999999999999999988765

>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like Back     alignment and domain information
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information
>PRK15172 putative aldose-1-epimerase; Provisional Back     alignment and domain information
>cd01081 Aldose_epim aldose 1-epimerase superfamily Back     alignment and domain information
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 Back     alignment and domain information
>cd09019 galactose_mutarotase_like galactose mutarotase_like Back     alignment and domain information
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02636 galM_Leloir galactose mutarotase Back     alignment and domain information
>PLN00194 aldose 1-epimerase; Provisional Back     alignment and domain information
>PRK11055 galM galactose-1-epimerase; Provisional Back     alignment and domain information
>PTZ00485 aldolase 1-epimerase; Provisional Back     alignment and domain information
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013 Back     alignment and domain information
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A Back     alignment and domain information
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like Back     alignment and domain information
>PF14315 DUF4380: Domain of unknown function (DUF4380) Back     alignment and domain information
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B Back     alignment and domain information
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain Back     alignment and domain information
>PRK01318 membrane protein insertase; Provisional Back     alignment and domain information
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
2cir_A297 Structure-Based Functional Annotation: Yeast Ymr099 1e-33
2ciq_A297 Structure-Based Functional Annotation: Yeast Ymr099 1e-33
2hta_A309 Crystal Structure Of A Putative Mutarotase (Yead) F 3e-26
1jov_A270 Crystal Structure Analysis Of Hi1317 Length = 270 2e-22
3k25_A289 Crystal Structure Of Slr1438 Protein From Synechocy 6e-11
3os7_A341 Crystal Structure Of A Galactose Mutarotase-Like Pr 9e-05
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase. Complex With Glucose-6-Phosphate Length = 297 Back     alignment and structure 
Iteration: 1

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 137/289 (47%), Gaps = 32/289 (11%)
Query: 24  EQVVLRNP--RGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQ 81
           ++VVL +P     S  I  +G    SW+  + EE L+ ST A       VRGGIP+ FP 
Sbjct: 8   KEVVLTHPADETTSVHILKYGATVYSWKL-KSEEQLWLSTAAKLDGSKPVRGGIPLVFPV 66
Query: 82  FGNRGS------LEQHGFARNRSWVI----DDNPPPLKPSDSQGKVYVDLLLKP---SEE 128
           FG   +      L QHG ARN +W       +NPP            V   LKP   + E
Sbjct: 67  FGKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPPT-----------VQFGLKPEIANPE 115
Query: 129 DLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGL 188
             K+WP  +   L V L +D     I      + K   F+  +HTYF I DI    +  L
Sbjct: 116 LTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNL 175
Query: 189 ETLDYLDNLCQRERFTEQGDALTFESEIDRVY--LSSSDKIAILDHERKRTFVIHKEGLP 246
             +   D L  +E + ++   +TF  E D +Y  +S+   I I+D +  +   + +  LP
Sbjct: 176 AGMKLYDQLL-KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLP 233
Query: 247 DVVVWNPWERKSKSMADFGDEE-YRHMLCVDGAAIEKPITLKPGEEWTG 294
           D VVWNPW  KS+ MADF  +  Y+ M+C++   +   I+L PG++W  
Sbjct: 234 DTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNA 282
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase Length = 297 Back     alignment and structure
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From Salmonella Typhimurium In Orthorhombic Form Length = 309 Back     alignment and structure
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317 Length = 270 Back     alignment and structure
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target Sgr112 Length = 289 Back     alignment and structure
>pdb|3OS7|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein (Ca_c0697) From Clostridium Acetobutylicum At 1.80 A Resolution Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 4e-98
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 3e-95
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 1e-80
1jov_A270 HI1317; hypothetical protein, structure 2 function 6e-77
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 1e-45
3q1n_A294 Galactose mutarotase related enzyme; structural ge 4e-42
3os7_A341 Galactose mutarotase-like protein; structural geno 1e-22
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 4e-20
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 4e-19
3ty1_A384 Hypothetical aldose 1-epimerase; supersandwich, st 9e-09
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Length = 309 Back     alignment and structure
 Score =  290 bits (742), Expect = 4e-98
 Identities = 80/300 (26%), Positives = 125/300 (41%), Gaps = 16/300 (5%)

Query: 4   SGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKA 63
           +    +    V   +  + ++ +V+ +P    A  +L G   LSW+    EE+L+ S   
Sbjct: 22  ALPVIEQLTPVLSRRQLDDLDLIVVDHP-QVKASFALQGAHLLSWKPVGEEEVLWLSNNT 80

Query: 64  IFKPPHAVRGGIPICFPQFGN--RGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDL 121
            FK   A+RGG+PIC+P FG   +  L  HGFARN  W +  +      ++    V +  
Sbjct: 81  PFKTGVALRGGVPICWPWFGPAAQQGLPSHGFARNLPWALKAH------NEDDNGVMLTF 134

Query: 122 LLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDIS 181
            L+ SE   K WPH F    R  +           I       F+ + A H+YF + DI+
Sbjct: 135 ELQSSEATRKYWPHDFTLLARFKVGKTC------EIELEAHGEFATTSALHSYFNVGDIA 188

Query: 182 EVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIH 241
            V++ GL    ++D +   +         TF    DRVYL+      I D    RT  + 
Sbjct: 189 NVKVSGLGD-RFIDKVNDAKEGVLTDGIQTFPDRTDRVYLNPEACSVIHDATLNRTIDVV 247

Query: 242 KEGLPDVVVWNPWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELSLV 301
                +VV WNP    S SM D  D+ Y+  +CV+      P      +       + + 
Sbjct: 248 HHHHLNVVGWNPGPALSVSMGDMPDDGYKTFVCVETVYATAPQQATEEKPSRLAQTICVA 307
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Length = 297 Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Length = 289 Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Length = 270 Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Length = 307 Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Length = 294 Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Length = 341 Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Length = 326 Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Length = 291 Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Length = 384 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 100.0
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 100.0
1jov_A270 HI1317; hypothetical protein, structure 2 function 100.0
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 100.0
3q1n_A294 Galactose mutarotase related enzyme; structural ge 100.0
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 100.0
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 100.0
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 100.0
3os7_A341 Galactose mutarotase-like protein; structural geno 100.0
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 100.0
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 100.0
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 100.0
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 100.0
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 100.0
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 100.0
3ty1_A384 Hypothetical aldose 1-epimerase; supersandwich, st 99.92
3bs6_A280 Inner membrane protein OXAA; YIDC/OXA1/ALB3 family 94.0
3blc_A330 Inner membrane protein OXAA; YIDC, membrane assemb 92.23
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Back     alignment and structure
Probab=100.00  E-value=1.2e-52  Score=382.55  Aligned_cols=275  Identities=28%  Similarity=0.521  Sum_probs=235.7

Q ss_pred             ceEEEEecCCCceEEEEeCCCccEEEEeCCCcEEEEEEeCCCEEEEEcCCCCcCCCCCcccCcceEEccccCCCC--CCC
Q 022000           12 AAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG--SLE   89 (304)
Q Consensus        12 ~~~~~~~~~~g~~~~~L~n~~~~~~~v~~~Ga~l~s~~~~~g~e~l~~~~~~~~~~~~~~rgG~p~lfP~~gr~~--~~~   89 (304)
                      ..+++.. .++++.++|+|+. ++|+|.++||+|+||+.++|+|+||..+.+.|....++|||+|+||||+||+.  .++
T Consensus        31 ~~~~~~~-~~~~~~~~L~n~~-~~a~I~~~GA~l~s~~~~~g~evL~~~~~~~~~~~~~~~GG~pil~P~~gRi~~g~~~  108 (309)
T 2hta_A           31 PVLSRRQ-LDDLDLIVVDHPQ-VKASFALQGAHLLSWKPVGEEEVLWLSNNTPFKTGVALRGGVPICWPWFGPAAQQGLP  108 (309)
T ss_dssp             SSEEEEE-ETTEEEEEEEETT-EEEEEETBTTEEEEEEETTSCCCBCBCTTCCCCTTCCCSBSBCEEBSCCSSCSSTTCC
T ss_pred             CceEEee-cCCceEEEEeCCC-eEEEEeccCcEEEEEEeCCCCEEEeCCchHhccCCCCeeccceEEEecCCCCCCCCCC
Confidence            4567765 7899999999984 99999999999999998656899999888888888899999999999999986  479


Q ss_pred             CceeEeecceEEeeCCCCCCCCCCCCceEEEEEecCCcchhccCCcceEEEEEEEEccCCcEEEEEEEEeCCCCcEeEee
Q 022000           90 QHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSI  169 (304)
Q Consensus        90 ~HG~~~~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~~~~L~~~~~v~N~~~~~~p~~~  169 (304)
                      +|||+|++.|++++.+      ++++..+|+|+|.++++++++|||+|+++++|+| + ++|+++|+++|    +|||++
T Consensus       109 ~HGfar~~~W~v~~~~------~~~~~~~v~l~l~s~~~~~~gyP~~~~l~vty~L-~-~~L~i~~~~~N----~~~~~~  176 (309)
T 2hta_A          109 SHGFARNLPWALKAHN------EDDNGVMLTFELQSSEATRKYWPHDFTLLARFKV-G-KTCEIELEAHG----EFATTS  176 (309)
T ss_dssp             TTBSGGGSBCEEEEEE------ECSSCEEEEEEEECCHHHHHHSCCCCEEEEEEEE-S-SSEEEEEEEES----SEEEEE
T ss_pred             CccCcCCCceEEEeEe------cCCCceEEEEEeCCChHHhhcCCCceEEEEEEEE-C-CceEEEEEEEC----CeEehh
Confidence            9999999999998753      1122367999999887788999999999999999 6 89999999998    899999


Q ss_pred             ecccceecCCcceEEEecCCCCcceecccccceeeecCceeeecCCcceEEcCCCCeEEEEeCCCCcEEEEEecCCCcEE
Q 022000          170 AYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDVV  249 (304)
Q Consensus       170 g~HpyF~~~~~~~l~~~gl~~~~~ld~~~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~~~~~g~~i~i~~~~~~~~v  249 (304)
                      |+||||+++++.++++.++ +..|++.+++++........++|..++|++|++....++|.++.+++.|+|.++++|++|
T Consensus       177 g~H~YFnl~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~df~~~~D~~~~~~~~~~~l~~~~~g~~l~v~~~~~p~~~  255 (309)
T 2hta_A          177 ALHSYFNVGDIANVKVSGL-GDRFIDKVNDAKEGVLTDGIQTFPDRTDRVYLNPEACSVIHDATLNRTIDVVHHHHLNVV  255 (309)
T ss_dssp             EECCEEECSCGGGCEEECC-CSEEEETTTTTEEEECSSSCEECSSCEEEEESSCCSEEEEEETTTTEEEEEEEESCSEEE
T ss_pred             cCCceEecCCccceEEECC-CCceEeccCCcccccccCCceecCCccCcEEeCCCCCEEEEeCCCCcEEEEEECCCCcEE
Confidence            9999999998777777766 567887665554433345568888899999986556789999999999999998899999


Q ss_pred             EeCCccccccccCCCCCCCcCcEEEeccCccCCCeEeCCCCEEEEEEEEEEE
Q 022000          250 VWNPWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELSLV  301 (304)
Q Consensus       250 vwtp~~~~~~~~~d~~~~~~~~~vCiEp~~~~~~~~L~pGe~~~~~~~i~~~  301 (304)
                      ||||+.++++.|.|+++++|++|||||||+..+.++|+|||+++.+++|++.
T Consensus       256 vwtp~~~~~~~~~d~~~~~~~~~vClEp~~~~~~~~L~PGe~~~~~~~~~~~  307 (309)
T 2hta_A          256 GWNPGPALSVSMGDMPDDGYKTFVCVETVYATAPQQATEEKPSRLAQTICVA  307 (309)
T ss_dssp             EEECHHHHHHHCTTSCTTGGGGEEEEEEEEEEEEEEEBTTBCEEEEEEEEEE
T ss_pred             EECCCcccccccccCCccccccEEEECeeecCCCEEECCCCeEEEEEEEEEe
Confidence            9999755555677888888899999999998778999999999999999985
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Back     alignment and structure
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Back     alignment and structure
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli} Back     alignment and structure
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 304
d1jova_269 b.30.5.7 (A:) Hypothetical protein HI1317 {Haemoph 1e-81
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Length = 269 Back     information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

 Score =  246 bits (628), Expect = 1e-81
 Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 30/281 (10%)

Query: 19  DRNGIEQVVLRNPRGASAKISLHGGQALSWRTERG-EELLFTSTKAIFKPPHAVRGGIPI 77
             N I  + L++  G +AKISL G Q +SW+ +   +++L+ S    FK  +A+RGG+PI
Sbjct: 17  QHNDIPVLHLKHAVG-TAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPI 75

Query: 78  CFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSF 137
           C+P FG       HG AR R W +           S  KV ++        +L    +  
Sbjct: 76  CYPWFGGVK-QPAHGTARIRLWQLSHY------YISVHKVRLEF-------ELFSDLNII 121

Query: 138 EFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNL 197
           E ++ +             +   +    S   A HTYF I DI++V ++GL    +    
Sbjct: 122 EAKVSM------VFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETCFNSLN 175

Query: 198 CQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDVVVWNPWERK 257
            Q+E              +D +Y + + +  ILD    RT  +H       V+WNPW +K
Sbjct: 176 QQQE---NVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWHKK 232

Query: 258 SKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLEL 298
           +  M++ G   Y+ MLC++ A I     L+ GE  +  + L
Sbjct: 233 TSGMSETG---YQKMLCLETARIHH--LLEFGESLSVEISL 268

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
d1jova_269 Hypothetical protein HI1317 {Haemophilus influenza 100.0
d1z45a1342 Galactose mutarotase {Baker's yeast (Saccharomyces 99.97
d1nsza_340 Galactose mutarotase {Lactococcus lactis [TaxId: 1 99.97
d1lura_329 Aldose 1-epimerase homologue {Nematode (Caenorhabd 99.97
d1so0a_344 Galactose mutarotase {Human (Homo sapiens) [TaxId: 99.96
d1k1xa2275 4-alpha-glucanotransferase, C-terminal domain {Arc 86.01
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=2.2e-53  Score=378.00  Aligned_cols=260  Identities=28%  Similarity=0.495  Sum_probs=212.6

Q ss_pred             ccceEEEEecCCCceEEEEeCCCccEEEEeCCCcEEEEEEeC-CCEEEEEcCCCCcCCCCCcccCcceEEccccCCCCCC
Q 022000           10 HRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTE-RGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSL   88 (304)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~L~n~~~~~~~v~~~Ga~l~s~~~~-~g~e~l~~~~~~~~~~~~~~rgG~p~lfP~~gr~~~~   88 (304)
                      ..+.|++.+ .++++.++|+|+. .+|+|+++||+|+||+.+ +++|+||+++.+.|+.+++||||+|+||||||+. .+
T Consensus         9 ~~~~~~~~~-~~~l~~i~i~~~~-~~a~i~~~Ga~l~s~~~~~~~~e~Lw~s~~a~~~~~~~IRGGiPi~fP~fG~~-~~   85 (269)
T d1jova_           9 LTPELHLVQ-HNDIPVLHLKHAV-GTAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGV-KQ   85 (269)
T ss_dssp             EETTEEEEE-ETTEEEEEEEETT-EEEEEETBTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGGG-SS
T ss_pred             cCCeEEeec-cCCccEEEEeCCC-EEEEEECCCCEEEEEEECCCCceEEEeCChhhccCCCcccCCcceeCcccCCC-CC
Confidence            346788877 6899999999995 899999999999999985 4579999999999999999999999999999986 47


Q ss_pred             CCceeEeecceEEeeCCCCCCCCCCCCceEEEEEecCCcchhccCCcceEEEEEEEEccCCcEEEEEEEEeCCCCcEeEe
Q 022000           89 EQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFS  168 (304)
Q Consensus        89 ~~HG~~~~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~~~~L~~~~~v~N~~~~~~p~~  168 (304)
                      ++|||||++.|+|++.+      ++.....+++++       ..|||.|+++++|+|+.    +  ++++|+++++|||+
T Consensus        86 p~HGFAR~~~w~l~~~~------~~~~~~~l~~~l-------~~~~~~f~~~~~~~ltl----~--~~l~n~~~~~~pf~  146 (269)
T d1jova_          86 PAHGTARIRLWQLSHYY------ISVHKVRLEFEL-------FSDLNIIEAKVSMVFTD----K--CHLTFTHYGEESAQ  146 (269)
T ss_dssp             STTBSGGGSBCEEEEEE------EETTEEEEEEEE-------ECTTSCEEEEEEEEESS----S--EEEEEEECCSSCEE
T ss_pred             CCCccccccceEEEEEe------cCCceEEEEEEe-------ccCCCcceEEEEEEecc----E--EEEEEccCCCccce
Confidence            99999999999999875      122233344333       34888999999998852    2  34467778899999


Q ss_pred             eecccceecCCcceEEEecCCCCcceecccccceeeecCceeeecCCcceEEcCCCCeEEEEeCCCCcEEEEEecCCCcE
Q 022000          169 IAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDV  248 (304)
Q Consensus       169 ~g~HpyF~~~~~~~l~~~gl~~~~~ld~~~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~~~~~g~~i~i~~~~~~~~  248 (304)
                      +|+||||++++..++.+.|+++..|.+.... ..  ...+.+.+.+++|++|.+.+..+.|.|+..++.|+|..++++++
T Consensus       147 ~g~HpyF~v~d~~~~~v~gl~~~~~~~~~~~-~~--~~~~~~~~~~~~D~i~~~~~~~~~i~d~~~~~~i~v~~~g~~~~  223 (269)
T d1jova_         147 AALHTYFNIGDINQVEVQGLPETCFNSLNQQ-QE--NVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQF  223 (269)
T ss_dssp             EEECCEEECSCGGGEEEESCCSEEEETTTTE-EE--ECCSSBCCSSCEEEEEECSSSEEEEEETTTTEEEEEEEESCSEE
T ss_pred             ecccceEecCCccceEEecCCcccccccccc-cc--ccCCCcccCcCeeEEecCCCCcEEEEeCCCCCEEEEEEeCCCcE
Confidence            9999999999999999999987655443221 11  12345667789999999988889999999999999999999999


Q ss_pred             EEeCCccccccccCCCCCCCcCcEEEeccCccCCCeEeCCCCEEEEEEEEE
Q 022000          249 VVWNPWERKSKSMADFGDEEYRHMLCVDGAAIEKPITLKPGEEWTGRLELS  299 (304)
Q Consensus       249 vvwtp~~~~~~~~~d~~~~~~~~~vCiEp~~~~~~~~L~pGe~~~~~~~i~  299 (304)
                      ||||||.++++.   |.+++|++||||||++..  .+|+|||+|+++++|+
T Consensus       224 vVWnP~~~~a~~---~~d~~~~~fvCVEp~~~~--~~L~PGes~~~~~~ir  269 (269)
T d1jova_         224 VLWNPWHKKTSG---MSETGYQKMLCLETARIH--HLLEFGESLSVEISLK  269 (269)
T ss_dssp             EEEECTTSCCTT---CCTTGGGGEEEEEEEEEE--EEECTTCEEEEEEEEC
T ss_pred             EEECCccchhcc---ccccCCCCEEEECcccCC--ceECCCCeEEEEEEEC
Confidence            999999877654   455679999999998754  4899999999998875
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1xa2 b.30.5.8 (A:385-659) 4-alpha-glucanotransferase, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure