Citrus Sinensis ID: 022031

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
MESKTLVEAALRVLNTPDPFEKARLGDSVACRWLDGTITQPYNRSLDLPVPDRPARLTNVKLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPALLRDSLAPPESEAGENVCTIEENEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGFGPQWYEPLATKESAP
ccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccHHHHHHHHHHHHHccccccccccHHHHHHccccHHHHHHHHHHcccc
ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHccccHHHHHHHccccccc
MESKTLVEAALRVlntpdpfekarlgdsvacrwldgtitqpynrsldlpvpdrparltnvklvspslmpklgkagslQSRQAIVHSLAHTESWAIDLSWDIVArfgkqeampreFFTDFVKVAQDEGRHFTLLAARLEELGssygalpahdglwdsAIATSKDLLARLAIEHCVheargldvlpttisrfrnggdneTAKLLEtvvypeeithcaaGVRWFRYLCLrsrdpallrdslappeseagenvctieeNEEVIRKFHAIVRthfrgplkppfnevarkaagfgpqwyeplatkesap
MESKTLVEAALRvlntpdpfekarlgdsvACRWLDGtitqpynrsldlpvpdrpARLTNVKLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVheargldvlpttisrfrnggdneTAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPALlrdslappeseagenvctieeNEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGfgpqwyeplatkesap
MESKTLVEAALRVLNTPDPFEKARLGDSVACRWLDGTITQPYNRSLDLPVPDRPARLTNVKLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPALLRDSLAPPESEAGENVCTIEENEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGFGPQWYEPLATKESAP
*********ALRVLNTPDPFEKARLGDSVACRWLDGTITQPYNRSLDLPV*********VKL******************QAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPAL**************NVCTIEENEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGFGPQWY**********
*ESKTLVEAALRVLNTPDPFEKARLGDSVACRWLDGTITQPYNRSLDL*****PAR**************************IVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPALLRDSLAPPESEAGENVCTIEENEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGFGPQWYEPLATK****
MESKTLVEAALRVLNTPDPFEKARLGDSVACRWLDGTITQPYNRSLDLPVPDRPARLTNVKLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPALLRDSLA*********VCTIEENEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGFGPQWYEPLATKESAP
***KTLVEAALRVLNTPDPFEKARLGDSVACRWLDGTIT********LPVPDRPARLTNVKLVSPSLMPK**KAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPALLRDSLAP*****GENVCTIEENEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGFGPQWYEPLAT*****
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MESKTLVEAALRVLNTPDPFEKARLGDSVACRWLDGTITQPYNRSLDLPVPDRPARLTNVKLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPALLRDSLAPPESEAGENVCTIEENEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGFGPQWYEPLATKESAP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query303 2.2.26 [Sep-21-2011]
P43935288 Uncharacterized protein H yes no 0.673 0.708 0.329 3e-19
>sp|P43935|Y077_HAEIN Uncharacterized protein HI_0077 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0077 PE=4 SV=1 Back     alignment and function desciption
 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 113/234 (48%), Gaps = 30/234 (12%)

Query: 7   VEAALRVLNTPDPFEKARLGDSVACRWLDGTITQPYNRSL-DLP----------VPDRPA 55
           VE AL+   T +P EK RL + +     D  + Q     L D P           P++P 
Sbjct: 12  VETALK---TANPQEKCRLVNDL----YDNLLPQIQLIKLEDFPEIVPQDNIAAFPEKPL 64

Query: 56  RLTNVKLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGK--QEAMPR 113
                 LV+P  +PK   A   +   A +H++AH E  AI+L  D   RFG+  QE +  
Sbjct: 65  ------LVAPKDVPKRSFATE-EGYAATLHAIAHIEFNAINLGLDAAWRFGRNAQEELGE 117

Query: 114 --EFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIE 171
              F  D+++VA++E  HF+L+   L+ LG  YG   AH GLW+ A AT+ D+  R+A+ 
Sbjct: 118 GLAFVKDWLRVAREESTHFSLVNEHLKTLGYQYGDFEAHAGLWEMAQATAHDIWERMALV 177

Query: 172 HCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLC 225
             V EARGLD  P    +     D     +L+ ++  +EI H   G  W+  L 
Sbjct: 178 PRVLEARGLDATPVLQEKIAQRKDFAAVNILD-IILRDEIGHVYIGNHWYHALS 230

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
224113181314 predicted protein [Populus trichocarpa] 0.990 0.955 0.853 1e-148
225449655310 PREDICTED: uncharacterized protein HI_00 0.986 0.964 0.83 1e-141
449441820301 PREDICTED: uncharacterized protein HI_00 0.966 0.973 0.809 1e-138
449493255301 PREDICTED: uncharacterized protein HI_00 0.966 0.973 0.812 1e-138
357463869300 hypothetical protein MTR_3g091130 [Medic 0.937 0.946 0.795 1e-137
15238192291 uncharacterized protein [Arabidopsis tha 0.953 0.993 0.780 1e-135
296090377289 unnamed protein product [Vitis vinifera] 0.920 0.965 0.792 1e-135
356516033304 PREDICTED: uncharacterized protein HI_00 0.960 0.957 0.79 1e-133
297810539287 oxidoreductase/ transition metal ion bin 0.947 1.0 0.772 1e-132
168006289307 predicted protein [Physcomitrella patens 0.960 0.947 0.681 1e-109
>gi|224113181|ref|XP_002316417.1| predicted protein [Populus trichocarpa] gi|222865457|gb|EEF02588.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/300 (85%), Positives = 271/300 (90%)

Query: 1   MESKTLVEAALRVLNTPDPFEKARLGDSVACRWLDGTITQPYNRSLDLPVPDRPARLTNV 60
           +ES+TLVEAALRVLNT DPFEKA+LGD VA +W  G+I Q YN SLD PVPDRPARL NV
Sbjct: 8   LESETLVEAALRVLNTGDPFEKAKLGDLVASKWQQGSIFQAYNPSLDFPVPDRPARLANV 67

Query: 61  KLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFV 120
           +LVSPSLMPKLGKAGSLQSRQAIVHSL HTESWAIDLSWDI+ARFGKQE MPREFFTDFV
Sbjct: 68  RLVSPSLMPKLGKAGSLQSRQAIVHSLVHTESWAIDLSWDIIARFGKQEGMPREFFTDFV 127

Query: 121 KVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGL 180
           KVAQDEGRHF LLA RLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGL
Sbjct: 128 KVAQDEGRHFNLLAKRLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGL 187

Query: 181 DVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPALLRDSLAP 240
           DVLPTTISRFRNGGDNETA LLETVVYPEEITHCAAGV+WF+YLCLRS+ PAL RD+L+ 
Sbjct: 188 DVLPTTISRFRNGGDNETADLLETVVYPEEITHCAAGVKWFKYLCLRSKTPALSRDNLSS 247

Query: 241 PESEAGENVCTIEENEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGFGPQWYEPLATKE 300
            E+   E   + E NEEVI+KFHAIVRTHFRGPLKPPFNE ARKAAGFGPQWYEPLA KE
Sbjct: 248 EENGDKETEISTEGNEEVIQKFHAIVRTHFRGPLKPPFNEEARKAAGFGPQWYEPLAVKE 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225449655|ref|XP_002262808.1| PREDICTED: uncharacterized protein HI_0077 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449441820|ref|XP_004138680.1| PREDICTED: uncharacterized protein HI_0077-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449493255|ref|XP_004159236.1| PREDICTED: uncharacterized protein HI_0077-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357463869|ref|XP_003602216.1| hypothetical protein MTR_3g091130 [Medicago truncatula] gi|355491264|gb|AES72467.1| hypothetical protein MTR_3g091130 [Medicago truncatula] Back     alignment and taxonomy information
>gi|15238192|ref|NP_196072.1| uncharacterized protein [Arabidopsis thaliana] gi|7406456|emb|CAB85558.1| 3-oxoacyl-[acyl-carrier-protein] synthase-like protein [Arabidopsis thaliana] gi|332003373|gb|AED90756.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|296090377|emb|CBI40196.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356516033|ref|XP_003526701.1| PREDICTED: uncharacterized protein HI_0077-like [Glycine max] Back     alignment and taxonomy information
>gi|297810539|ref|XP_002873153.1| oxidoreductase/ transition metal ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297318990|gb|EFH49412.1| oxidoreductase/ transition metal ion binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|168006289|ref|XP_001755842.1| predicted protein [Physcomitrella patens subsp. patens] gi|162693161|gb|EDQ79515.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
TAIR|locus:2184372291 AT5G04520 "AT5G04520" [Arabido 0.953 0.993 0.780 3.7e-126
ZFIN|ZDB-GENE-030616-19426 si:ch73-314g15.3 "si:ch73-314g 0.735 0.523 0.517 7.7e-68
ASPGD|ASPL0000064279446 AN7364 [Emericella nidulans (t 0.749 0.508 0.448 1.1e-52
UNIPROTKB|Q5LRA0278 SPO2229 "Uncharacterized prote 0.782 0.852 0.419 9.8e-50
TIGR_CMR|SPO_2229278 SPO_2229 "conserved hypothetic 0.782 0.852 0.419 9.8e-50
UNIPROTKB|Q604Q4278 MCA2484 "Putative uncharacteri 0.541 0.589 0.417 2.4e-37
TAIR|locus:2038550383 AT1G06240 "AT1G06240" [Arabido 0.739 0.584 0.375 5.1e-37
UNIPROTKB|Q5HTZ1265 CJE1256 "Putative uncharacteri 0.528 0.603 0.329 1.5e-19
TIGR_CMR|CJE_1256265 CJE_1256 "conserved hypothetic 0.528 0.603 0.329 1.5e-19
TAIR|locus:2184372 AT5G04520 "AT5G04520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1239 (441.2 bits), Expect = 3.7e-126, P = 3.7e-126
 Identities = 235/301 (78%), Positives = 263/301 (87%)

Query:     1 MESKTLVEAALRVLNTPDPFEKARLGDSVACRWLDGTITQPYNRSLDLPVPDRPARLTNV 60
             M+ +TL+E+A+R+LNT DP EKARLGDS+A +WL G I +PY+ ++D PVPDRPARL  V
Sbjct:     1 MDCETLIESAIRILNTSDPHEKARLGDSIAVKWLQGAIAEPYDPTVDFPVPDRPARLP-V 59

Query:    61 KLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFV 120
             KLVSPSLMPKLG+AGSLQSRQAIVHSLAHTESWAIDLSWDI+ARFGKQE MPR+FFTDFV
Sbjct:    60 KLVSPSLMPKLGRAGSLQSRQAIVHSLAHTESWAIDLSWDIIARFGKQEKMPRDFFTDFV 119

Query:   121 KVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGL 180
             +VAQDEGRHFTLLAARLEE+GSSYGALPAHDGLWDSA ATS DLLARLAIEHCVHEARGL
Sbjct:   120 RVAQDEGRHFTLLAARLEEIGSSYGALPAHDGLWDSATATSHDLLARLAIEHCVHEARGL 179

Query:   181 DVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPALLRDSLAP 240
             DVLPTTISRFRNGGDNETA LLE VVYPEEITHCAAGV+WF+YLC RS+DP     +++ 
Sbjct:   180 DVLPTTISRFRNGGDNETADLLEKVVYPEEITHCAAGVKWFKYLCERSKDPEF---TISS 236

Query:   241 PESEAGENVCTIEENEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGFGPQWYEPLATKE 300
              ES+        + NEE+I KFH++VR HFRGPLKPPFN  ARKAAGFGPQWYEPLA KE
Sbjct:   237 KESD--------DSNEEIINKFHSVVREHFRGPLKPPFNAEARKAAGFGPQWYEPLAVKE 288

Query:   301 S 301
             S
Sbjct:   289 S 289
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
ZFIN|ZDB-GENE-030616-19 si:ch73-314g15.3 "si:ch73-314g15.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000064279 AN7364 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LRA0 SPO2229 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2229 SPO_2229 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q604Q4 MCA2484 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
TAIR|locus:2038550 AT1G06240 "AT1G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5HTZ1 CJE1256 "Putative uncharacterized protein" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1256 CJE_1256 "conserved hypothetical protein" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
pfam04305250 pfam04305, DUF455, Protein of unknown function (DU 1e-101
COG2833268 COG2833, COG2833, Uncharacterized protein conserve 4e-67
cd00657130 cd00657, Ferritin_like, Ferritin-like superfamily 4e-15
>gnl|CDD|218017 pfam04305, DUF455, Protein of unknown function (DUF455) Back     alignment and domain information 
 Score =  296 bits (759), Expect = e-101
 Identities = 127/284 (44%), Positives = 161/284 (56%), Gaps = 36/284 (12%)

Query: 14  LNTPDPFEKARLGDSVACRWLDGTITQPYNRSLD-LPVPDRPARLTNVKLVSPSLMPKLG 72
           L TPDP EK  L  ++A  W  G +           P P RPA+    +LV+P  +P+ G
Sbjct: 1   LLTPDPEEKVALTRALAAAWFAGELPLASPEPGTAPPRPGRPAKP---ELVAPRDVPRRG 57

Query: 73  KAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTL 132
           K GS + R A++H+LAH E  AIDL+ D VARF     +PREF+ D++KVA DE +HF L
Sbjct: 58  KLGSEEGRAALLHALAHIELNAIDLALDAVARFR---GLPREFYDDWLKVADDEAKHFRL 114

Query: 133 LAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRN 192
           L  RLEELGS YG  PAHDGLW++A  T+ DLLAR+A+   V EARGLD  P  I++   
Sbjct: 115 LRERLEELGSEYGDFPAHDGLWEAAEKTADDLLARMALVPRVLEARGLDATPGIIAKLEG 174

Query: 193 GGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRS-RDPALLRDSLAPPESEAGENVCT 251
            GDNE+A +L+ V+  +EI H A G RWFR+LC R   DP                    
Sbjct: 175 AGDNESAAILD-VILRDEIGHVAIGNRWFRFLCERRGLDP-------------------- 213

Query: 252 IEENEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGFGPQWYEP 295
                  I  F  +VR +FRG LK PFNE AR+ AGF      P
Sbjct: 214 -------IETFRELVRKYFRGALKGPFNEEARRKAGFSEDELAP 250

Length = 250
>gnl|CDD|225389 COG2833, COG2833, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|153097 cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 303
PF04305253 DUF455: Protein of unknown function (DUF455); Inte 100.0
COG2833268 Uncharacterized protein conserved in bacteria [Fun 100.0
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 98.94
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 97.48
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 97.22
cd01055156 Nonheme_Ferritin nonheme-containing ferritins. Non 97.04
PRK13456186 DNA protection protein DPS; Provisional 96.52
cd01051156 Mn_catalase Manganese catalase, ferritin-like diir 96.47
cd00907153 Bacterioferritin Bacterioferritin, ferritin-like d 96.22
cd07908154 Mn_catalase_like Manganese catalase-like protein, 95.96
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 95.54
PRK10635158 bacterioferritin; Provisional 95.42
cd07910180 MiaE MiaE tRNA-modifying nonheme diiron monooxygen 95.19
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 95.07
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 94.93
PRK13778314 paaA phenylacetate-CoA oxygenase subunit PaaA; Pro 94.86
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 94.8
PRK10304165 ferritin; Provisional 94.65
PF05138263 PaaA_PaaC: Phenylacetic acid catabolic protein; In 94.62
TIGR02156289 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subu 94.61
cd01052148 DPSL DPS-like protein, ferritin-like diiron-bindin 94.25
PF13668137 Ferritin_2: Ferritin-like domain 94.21
PF00210142 Ferritin: Ferritin-like domain; InterPro: IPR00833 94.13
TIGR00754157 bfr bacterioferritin. Bacterioferritin is a homomu 93.78
cd01058304 AAMH_B Aromatic and Alkene Monooxygenase Hydroxyla 93.58
TIGR02158237 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subu 93.36
cd01056161 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferr 92.55
cd01057 465 AAMH_A Aromatic and Alkene Monooxygenase Hydroxyla 92.44
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 91.65
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 91.54
PF02332233 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; 89.73
COG2406172 Protein distantly related to bacterial ferritins [ 89.42
cd01042165 DMQH Demethoxyubiquinone hydroxylase, ferritin-lik 88.92
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 88.74
PF06175240 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); Inter 88.58
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 87.7
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 87.37
COG4445203 MiaE Hydroxylase for synthesis of 2-methylthio-cis 86.95
PF03232172 COQ7: Ubiquinone biosynthesis protein COQ7; InterP 85.01
cd01043139 DPS DPS protein, ferritin-like diiron-binding doma 84.82
COG1633176 Uncharacterized conserved protein [Function unknow 83.82
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins Back     alignment and domain information 
Probab=100.00  E-value=3.9e-96  Score=680.54  Aligned_cols=253  Identities=49%  Similarity=0.826  Sum_probs=241.2

Q ss_pred             HcCCCHHHHHHhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCHhHHHHHHHHHHhhHHH
Q 022031           14 LNTPDPFEKARLGDSVACRWLDGTITQPYNRSLDLPVPDRPARLTNVKLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESW   93 (303)
Q Consensus        14 L~~~dp~~K~~~~~~~~~~~~~g~l~~~~~~~~~~~~p~~P~Rp~~~~lv~P~~~p~r~~~~t~~~ra~lLHaiAHIE~~   93 (303)
                      |+++||++|+.+|+.+++.|++|.+....+...+..+|..|+||++|+||+|+++|+|++++|.+||++|||+|||||||
T Consensus         1 L~~~dp~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~rp~~~~lv~p~~~p~r~~~~~~~~r~~llHaiAhIE~~   80 (253)
T PF04305_consen    1 LNTPDPEEKVALTRELAEKWRAGELQIDDDPPGPAPPPERPGRPEKPELVPPRDVPRRGKLGTPEGRAALLHAIAHIELN   80 (253)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCCCCeecChhhcCCCCCCCChhhHHHHHHHhcchHHH
Confidence            78999999999999999999999987754433444458899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHHHHHHHhhh
Q 022031           94 AIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHC  173 (303)
Q Consensus        94 AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dllaRmAvvp~  173 (303)
                      |||||||++|||.  ++||.+||.||++||.||+|||+||.+||++||++|||||||+|||++|++|++||++|||||||
T Consensus        81 AIdLa~Da~~RF~--~~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gLw~~~~~t~~dl~~R~A~vp~  158 (253)
T PF04305_consen   81 AIDLALDAIYRFH--PNLPREFYDDWLRVADDEARHFRLLRERLEELGSDYGDLPAHDGLWEAAEQTAHDLLARMALVPR  158 (253)
T ss_pred             HHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHhccCHHHHHHHHHH
Confidence            9999999999992  38999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHHhcCCCccccCCCCCCCcccccccchhh
Q 022031          174 VHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPALLRDSLAPPESEAGENVCTIE  253 (303)
Q Consensus       174 vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (303)
                      |+||||||+||.+++||++.||.+|++||+ |||+|||+||++|+|||+|+|+++|.+|                     
T Consensus       159 ~~EArGLD~~p~~~~k~~~~gD~~sa~iL~-~I~~DEi~HV~~G~rWf~~~c~~~~~~p---------------------  216 (253)
T PF04305_consen  159 VLEARGLDVTPFIIEKFRSAGDEESAAILE-IILRDEIGHVAIGNRWFRYLCEQRGLDP---------------------  216 (253)
T ss_pred             HHHhhCCCCCHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHhccccH---------------------
Confidence            999999999999999999999999999999 8999999999999999999999999987                     


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHhCCCChhhchh
Q 022031          254 ENEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGFGPQWYEP  295 (303)
Q Consensus       254 ~~~~~~~~f~~lv~~~~~~~lk~pfN~eaR~~AGfs~~~~~~  295 (303)
                           +++|+++|+.||.+.+|||||.+||++||||++||+.
T Consensus       217 -----~~~f~~lv~~~~~~~~k~pfN~eaR~~AGfs~~~~~~  253 (253)
T PF04305_consen  217 -----WETFRELVRQYFRGKLKGPFNEEARLKAGFSEEEYED  253 (253)
T ss_pred             -----HHHHHHHHHHhCCCCCCCCCCHHHHHHcCCCHHHhcC
Confidence                 8999999999999999999999999999999999974

>COG2833 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd01055 Nonheme_Ferritin nonheme-containing ferritins Back     alignment and domain information
>PRK13456 DNA protection protein DPS; Provisional Back     alignment and domain information
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK10635 bacterioferritin; Provisional Back     alignment and domain information
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>PRK10304 ferritin; Provisional Back     alignment and domain information
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid [] Back     alignment and domain information
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit Back     alignment and domain information
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms [] Back     alignment and domain information
>TIGR00754 bfr bacterioferritin Back     alignment and domain information
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain Back     alignment and domain information
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit Back     alignment and domain information
>cd01056 Euk_Ferritin eukaryotic ferritins Back     alignment and domain information
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1 Back     alignment and domain information
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only] Back     alignment and domain information
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ] Back     alignment and domain information
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 49/349 (14%), Positives = 99/349 (28%), Gaps = 129/349 (36%)

Query: 1   MESKTLVEAALRVLNTPDPFEKARLGDSVACRWLDGTITQPYNRSLDLPVPDRPARLTNV 60
           M ++  +E   R+ N    F K                   YN      V  R      +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAK-------------------YN------VS-RLQPYLKL 140

Query: 61  KLVSPSLMPKLGKAGSLQSRQAI-VHSLAHT-ESWAIDLSWDIVARFGKQEAMPREFFTD 118
           +    +L+        L+  + + +  +  + ++W   ++ D+   +  Q  M  + F  
Sbjct: 141 RQ---ALL-------ELRPAKNVLIDGVLGSGKTW---VALDVCLSYKVQCKMDFKIF-- 185

Query: 119 FVKVAQDEGRHFTL--LAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHE 176
           ++ +         L  L   L ++  ++ +   H       I + +  L RL      +E
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYE 244

Query: 177 ARGLDVL-----PTTISRF----------RNGG-----------------------DNET 198
              L VL         + F          R                           +E 
Sbjct: 245 -NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 199 AKLLETVVY------PEE--------ITHCAAGV-----RW--FRYL-----------CL 226
             LL   +       P E        ++  A  +      W  ++++            L
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 227 RSRDPALLR---DSLA--PPESEAGENVCTI-------EENEEVIRKFH 263
              +PA  R   D L+  PP +     + ++        +   V+ K H
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
3uno_A189 Probable bacterioferritin BFRB; ferroxidase activi 96.93
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 96.87
1krq_A167 Ferritin; H-chain like four-helix bundle, binding 96.77
1rcd_A173 L ferritin; iron storage; 2.00A {Rana catesbeiana} 96.74
2cih_A183 Ferritin heavy chain; apoferritin, ferroxidase, DI 96.69
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 96.67
1eum_A165 Ferritin 1; ECFTNA, metal binding protein; 2.05A { 96.66
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 96.64
3qz3_A184 Ferritin; structural genomics, the center for stru 96.59
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 96.52
2inc_A 491 Toluene, O-xylene monooxygenase oxygenase subunit; 96.48
3e6s_A168 Ferritin; iron storage, ferroxidase, oxidoreductas 96.37
1s3q_A173 Ferritin; ferroxidase, four helix bundle, iron sto 96.31
3ka8_A176 Ferritin, middle subunit; iron storage, DIIRON, ir 96.21
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 96.17
3pvt_A311 Phenylacetic acid degradation protein PAAA; protei 96.14
3a68_A212 Sferh-4, ferritin-4, chloroplastic; 4-helix bundle 96.06
2v2p_A174 Ferritin light chain; metal transport, iron, haemi 95.98
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 95.83
2vzb_A170 Putative bacterioferritin-related protein; DPS, DP 95.75
3bvf_A181 Ferritin; iron storage, metal-binding, oxidoreduct 95.6
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 95.59
3kxu_A191 Ferritin; iron storage protein, disorder, iron, me 95.42
2jd6_0174 Ferritin homolog, ferritin; metal transport, iron, 95.41
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 95.3
3vnx_A204 Ferritin; 4-helix bundle, iron storage, oxidoreduc 95.16
3fvb_A182 Bacterioferritin; niaid, ssgcid, decode, structura 95.08
3r2k_A154 Bacterioferritin, BFR; bacterial ferritin, iron bi 94.87
3oj5_A189 Ferritin family protein; ferroxidase, cytosol, oxi 94.84
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 94.74
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 94.69
1otk_A249 Protein PAAC, phenylacetic acid degradation protei 94.6
1vlg_A176 Ferritin; TM1128, structural genomics, JCSG, prote 94.59
1mty_D 512 Methane monooxygenase hydroxylase; dinuclear iron 94.51
2itb_A206 TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative 94.25
3u52_A 511 Phenol hydroxylase component PHN; 4-helix bundle, 94.1
3ge3_A 500 Toluene-4-monooxygenase system protein A; DIIRON h 93.53
2fzf_A175 Hypothetical protein; structural genomics, southea 93.23
2vxx_A192 Starvation induced DNA binding protein; stress res 92.67
1ji5_A142 DLP-1; dodecamer, four-helix bundle, metal transpo 91.85
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 91.24
1z6o_M191 Ferritin heavy chain; metal binding protein, iron 90.58
1o9i_A266 Pseudocatalase; oxidoreductase, hexamer, dimangane 90.23
3ge3_B327 Toluene-4-monooxygenase system protein E; DIIRON h 90.09
1mhy_B395 Methane monooxygenase hydroxylase; oxidoreductase, 89.97
1jig_A146 DLP-2; dodecamer, four-helix bundle, metal transpo 88.1
2c41_A158 DPS family DNA-binding stress response protein; ir 87.75
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 87.71
2inc_B322 Toluene, O-xylene monooxygenase oxygenase subunit; 87.56
4di0_A144 Rubrerythrin; ssgcid, seattle structural genomics 86.88
1n1q_A149 DPS protein; four-helix bundle, unknown function; 86.79
3hl1_A317 Ferritin like protein; structural genomics, joint 86.43
2v8t_A302 Manganese-containing pseudocatalase; manganese cat 86.3
1mty_B384 Methane monooxygenase hydroxylase; dinuclear iron 85.79
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 85.27
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 83.83
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 83.11
3chh_A336 P-aminobenzoate N-oxygenase; DI-iron oxygenase, ox 82.33
2d5k_A156 DPS, DPS family protein; four helix bundle, metal 82.15
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A Back     alignment and structure
Probab=96.93  E-value=0.0061  Score=53.42  Aligned_cols=137  Identities=18%  Similarity=0.141  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCccchhhHHH
Q 022031           79 SRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSS--YGALPAHDGLWDS  156 (303)
Q Consensus        79 ~ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~--YGd~P~H~gLW~~  156 (303)
                      .-...|-...+.|+.|++..+-..+=|.. .++| .|-.=|.+.|.||-.|...+.+|+..+|..  +.+++.-..=|..
T Consensus        10 ~v~~~LN~qi~~El~As~~Yl~~a~~f~~-~~l~-g~a~~f~~~A~EE~~HA~~l~~~i~~rGG~~~l~~i~~p~~~~~s   87 (189)
T 3uno_A           10 KFHALMQEQIHNEFTAAQQYVAIAVYFDS-EDLP-QLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRNQFDR   87 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CChH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCCCccchH
Confidence            45788899999999999999988777743 3443 555556688999999999999999999975  4555443333543


Q ss_pred             HHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031          157 AIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCL  226 (303)
Q Consensus       157 a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~  226 (303)
                      ..+....        -+.+|..--..-..+++.....+|..+.+.|+. |+.||+.|++.=...+..++.
T Consensus        88 ~~e~le~--------aL~~Ek~v~~~l~~l~~la~~~~D~~t~~fLe~-fL~EQve~~~~l~~~l~~l~~  148 (189)
T 3uno_A           88 PREALAL--------ALDQERTVTDQVGRLTAVARDEGDFLGEQFMQW-FLQEQIEEVALMATLVRVADR  148 (189)
T ss_dssp             HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            3221111        112233321222235666677899999999995 799999999766566666654
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Back     alignment and structure
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A Back     alignment and structure
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1 Back     alignment and structure
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1 Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A Back     alignment and structure
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A Back     alignment and structure
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A Back     alignment and structure
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C Back     alignment and structure
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A Back     alignment and structure
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ... Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A Back     alignment and structure
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa} Back     alignment and structure
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Back     alignment and structure
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A Back     alignment and structure
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A Back     alignment and structure
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A* Back     alignment and structure
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ... Back     alignment and structure
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7 Back     alignment and structure
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A Back     alignment and structure
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus} Back     alignment and structure
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Back     alignment and structure
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A Back     alignment and structure
>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* 3q14_B 3q2a_B* 3q3m_B* 3q3n_B* 3q3o_B* 3rmk_B* 3ri7_B Back     alignment and structure
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.25.1.2 PDB: 1mhz_B Back     alignment and structure
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus} Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B* Back     alignment and structure
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1 Back     alignment and structure
>3hl1_A Ferritin like protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Caulobacter vibrioides} Back     alignment and structure
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A Back     alignment and structure
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ... Back     alignment and structure
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A Back     alignment and structure
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 97.96
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 96.86
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 96.79
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 96.78
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 96.68
d2inca1 491 Toluene, o-xylene monooxygenase oxygenase subunit 96.58
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 96.43
d1euma_161 Non-hem ferritin {Escherichia coli, FtnA [TaxId: 5 96.21
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 96.13
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 95.85
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 95.73
d1s3qa1162 Non-hem ferritin {Archaeon Archaeoglobus fulgidus 95.4
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 95.36
d2itba1199 Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Ps 95.3
d1vlga_164 Non-hem ferritin {Thermotoga maritima [TaxId: 2336 95.18
d1mtyd_ 512 Methane monooxygenase hydrolase alpha subunit {Met 94.9
d1krqa_165 Non-hem ferritin {Campylobacter jejuni [TaxId: 197 94.71
d1r03a_171 (Apo)ferritin {Human (Homo sapiens), mitocondial i 94.3
d1bg7a_173 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 94.01
d1rcda_171 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 93.51
d1lb3a_179 (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090] 93.33
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 92.54
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 91.39
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 90.37
d1otka_244 Phenylacetic acid degradation protein PaaC {Escher 87.86
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 86.92
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 86.18
d1mtyb_384 Methane monooxygenase hydrolase beta subunit {Meth 84.4
d1jkva_266 Manganese catalase (T-catalase) {Lactobacillus pla 82.64
d1jk0b_285 Ribonucleotide reductase R2 {Baker's yeast (Saccha 81.71
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 80.39
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=97.96  E-value=0.0002  Score=58.59  Aligned_cols=135  Identities=22%  Similarity=0.246  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCh-hHHHhHHHHHHHHHHHHHHHHHHHHHhCCC----CCCCccchhhH
Q 022031           80 RQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPR-EFFTDFVKVAQDEGRHFTLLAARLEELGSS----YGALPAHDGLW  154 (303)
Q Consensus        80 ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~-~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~----YGd~P~H~gLW  154 (303)
                      -+.+|-.....|++|+...+-..+-|.   +.-. .+-.=|.+.|.+|..|..++.+|+..+|..    +.+.|-+..-.
T Consensus         9 ii~~Ln~~l~~E~~a~~~Y~~~a~~~~---~~~~~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~~~~~~~   85 (169)
T d1nf4a_           9 VIEVLNKARAMELHAIHQYMNQHYSLD---DMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAV   85 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCCCCSCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccccccccCCCCH
Confidence            456677777899999999877766663   2322 344445567999999999999999999975    33444333222


Q ss_pred             HHHHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhH-----------HhhhHHHHH
Q 022031          155 DSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHC-----------AAGVRWFRY  223 (303)
Q Consensus       155 ~~a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV-----------~~G~rWf~~  223 (303)
                      ..+.+  .+         +-.|....+.-+.+++.....||..++++|+. |+.||..|+           .+|.   +|
T Consensus        86 ~e~l~--~~---------l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~-il~eE~~H~~~~e~~l~~i~~~G~---~y  150 (169)
T d1nf4a_          86 PVIYE--SD---------ADQEDATIEAYSQFLKVCKEQGDIVTARLFER-IIEEEQAHLTYYENIGSHIKNLGD---TY  150 (169)
T ss_dssp             HHHHH--HH---------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTH---HH
T ss_pred             HHHHH--HH---------HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH---HH
Confidence            21111  12         23444444444567788889999999999996 799999999           4564   47


Q ss_pred             HHHhcCCCc
Q 022031          224 LCLRSRDPA  232 (303)
Q Consensus       224 lc~~~~~~~  232 (303)
                      +|++.|..+
T Consensus       151 l~~~~~~~~  159 (169)
T d1nf4a_         151 LAKIAGTPS  159 (169)
T ss_dssp             HHHHTTCCC
T ss_pred             HHHHhCCCC
Confidence            777777543
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]} Back     information, alignment and structure
>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1otka_ a.25.1.2 (A:) Phenylacetic acid degradation protein PaaC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure