Citrus Sinensis ID: 022032

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
MTSVRNNLMPPGLVSNLEQVLLNKKKKSKDNDDDGDDGTSKQSNEEANESTEPSTSDSTENVDSSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKGFKFTKQSMWRSTPNWQAVSANRYPAGHFMSNQQSLGLQLAQLGRDASAALVV
ccccccccccHHHHHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHcccccEEEEccccccccccccccccccEEEEEEcccccEEEEEcccHHHHHHHHHHccccccccccEEEEcccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccccccEEEEEccccccccccEEEccccccccccEEcccccccccEEEccccccEEEc
ccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEccccccccccccccccccEEEEEEcccccEEEEEccccHHHHHHHHHHHccccccccEEEEEEcccccccccEEEHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHcccEEEccccccccHHEEEEccccccccEEEccccccccEEEEEccccccEEcc
mtsvrnnlmppglvsNLEQVLLNKkkkskdndddgddgtskqsneeanestepstsdstenvdsskpvllvtngdgiespgLVYLVEALVREGlynvhvcapqsdksvsghsvTLRETIAVSSAeingatayevsgtpvdCVSLALSGalfswskpllvisginrgsscghhmFYSGVVAGAREALIcgvpslsislnwkkdesqesdfKDAVSVCLPLInaatrdigkgifprscllnveiptspltnkgfkftkqsmwrstpnwqavsanrypaghfmsnqqSLGLQLAQLGRDASAALVV
mtsvrnnlmppglvsNLEQVLLNKkkkskdndddgddgtskqsneeanestepstsdstenvdssKPVLLVtngdgiesPGLVYLVEALVREGLYNVHVCapqsdksvsghsVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNveiptspltnkgFKFTKQSMWRSTPNWQAVSANRYPAGHFMSNQQSLGLQLAQLGRDASAALVV
MTSVRNNLMPPGLVSNLEQVLLnkkkkskdndddgddgtskQSNEEANestepstsdsteNVDSSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKGFKFTKQSMWRSTPNWQAVSANRYPAGHFMSNqqslglqlaqlgRDASAALVV
*******************************************************************VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQ******GHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKK******DFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKGFKFTKQSMWRSTPNWQAVSANRYPAGHF************************
**********PGLVSNLE*************************************************VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKGFKFTKQSMWRSTPNWQAVSANRYPAGHFMSNQQSLGLQLAQLGRDASAALVV
MTSVRNNLMPPGLVSNLEQVLLNKK***************************************SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS*********TLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWK*********KDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKGFKFTKQSMWRSTPNWQAVSANRYPAGHFMSNQQSLGLQLAQLGR********
******NLMPPGLVSNLEQVLLNK****************************************SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKGFKFTKQSMWRSTPNWQAVSANRYPAGHFMSNQQSLGLQLAQLGRDASAALV*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTSVRNNLMPPGLVSNLEQVLLNKKKKSKDNDDDGDDGTSKQSNEEANESTEPSTSDSTENVDSSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKGFKFTKQSMWRSTPNWQAVSANRYPAGHFMSNQQSLGLQLAQLGRDASAALVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query303 2.2.26 [Sep-21-2011]
Q24WI0251 5'-nucleotidase SurE OS=D yes no 0.561 0.677 0.395 3e-26
B8FYS8251 5'-nucleotidase SurE OS=D yes no 0.561 0.677 0.395 3e-26
A1VY14258 5'-nucleotidase SurE OS=C yes no 0.646 0.759 0.372 3e-25
A8FK82258 5'-nucleotidase SurE OS=C yes no 0.646 0.759 0.372 5e-25
Q5HWH7258 5'-nucleotidase SurE OS=C yes no 0.646 0.759 0.372 5e-25
Q9PIK6258 5'-nucleotidase SurE OS=C yes no 0.646 0.759 0.372 5e-25
Q823A7283 5'-nucleotidase SurE 2 OS no no 0.594 0.636 0.356 2e-24
B7IH68255 5'-nucleotidase SurE OS=T yes no 0.584 0.694 0.378 5e-24
A6H213257 5'-nucleotidase SurE OS=F yes no 0.623 0.735 0.374 6e-24
C0ZGV3265 5'-nucleotidase SurE OS=B yes no 0.580 0.664 0.360 1e-23
>sp|Q24WI0|SURE_DESHY 5'-nucleotidase SurE OS=Desulfitobacterium hafniense (strain Y51) GN=surE PE=3 SV=1 Back     alignment and function desciption
 Score =  119 bits (298), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 108/192 (56%), Gaps = 22/192 (11%)

Query: 69  LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEING 128
           +L+TN DG  +PGL  L   L   G Y+V + AP S KS +GHS+TL E + ++   ++ 
Sbjct: 3   ILLTNDDGYFAPGLQTLYTTLAEAG-YDVFIVAPDSQKSATGHSITLFEPLFITKHSLDR 61

Query: 129 ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALIC 188
            T Y VSG P DCV LA+ G++    KP LVISGIN G + G  +FYSG V+ A E ++ 
Sbjct: 62  GTGYAVSGKPADCVKLAIQGSII--PKPDLVISGINNGPNLGTDVFYSGTVSAAMEGVLL 119

Query: 189 GVPSLSISLNWKKDESQESDFKDA---VSVCLPLINAATRDIGKGIFPRSCLLNVEIPTS 245
           GVP++++SL          D+K A   V++ LP +      +G G      L+N+ IP  
Sbjct: 120 GVPAIAVSLA----SFSAVDYKPAAQFVALSLPKLR-----LGPG------LININIPPL 164

Query: 246 PLTN-KGFKFTK 256
           P    KG + TK
Sbjct: 165 PEKEWKGVRVTK 176
Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.
Desulfitobacterium hafniense (strain Y51) (taxid: 138119)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 5
>sp|B8FYS8|SURE_DESHD 5'-nucleotidase SurE OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A1VY14|SURE_CAMJJ 5'-nucleotidase SurE OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A8FK82|SURE_CAMJ8 5'-nucleotidase SurE OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q5HWH7|SURE_CAMJR 5'-nucleotidase SurE OS=Campylobacter jejuni (strain RM1221) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q9PIK6|SURE_CAMJE 5'-nucleotidase SurE OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q823A7|SURE2_CHLCV 5'-nucleotidase SurE 2 OS=Chlamydophila caviae (strain GPIC) GN=surE2 PE=3 SV=2 Back     alignment and function description
>sp|B7IH68|SURE_THEAB 5'-nucleotidase SurE OS=Thermosipho africanus (strain TCF52B) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A6H213|SURE_FLAPJ 5'-nucleotidase SurE OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|C0ZGV3|SURE_BREBN 5'-nucleotidase SurE OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=surE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
225442198384 PREDICTED: 5'-nucleotidase surE [Vitis v 0.947 0.747 0.788 1e-135
449458159388 PREDICTED: 5'-nucleotidase SurE-like [Cu 0.957 0.747 0.788 1e-132
307135867388 acid phosphatase [Cucumis melo subsp. me 0.957 0.747 0.781 1e-131
224134587390 predicted protein [Populus trichocarpa] 0.973 0.756 0.771 1e-130
118484339394 unknown [Populus trichocarpa] 0.966 0.743 0.754 1e-128
224128690386 predicted protein [Populus trichocarpa] 0.930 0.730 0.754 1e-126
359807197375 uncharacterized protein LOC100779772 [Gl 0.933 0.754 0.737 1e-126
356556819372 PREDICTED: 5'-nucleotidase surE-like [Gl 0.917 0.747 0.735 1e-125
357454581377 5'-nucleotidase surE [Medicago truncatul 0.937 0.753 0.714 1e-119
297842033381 hypothetical protein ARALYDRAFT_476423 [ 0.950 0.755 0.719 1e-117
>gi|225442198|ref|XP_002276942.1| PREDICTED: 5'-nucleotidase surE [Vitis vinifera] gi|297743037|emb|CBI35904.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/302 (78%), Positives = 267/302 (88%), Gaps = 15/302 (4%)

Query: 2   TSVRNNLMPPGLVSNLEQVLLNKKKKSKDNDDDGDDGTSKQSNEEANESTEPSTSDSTE- 60
           TSV+NN +PPGLVSNL++VLLN+K  S+++    +D           EST+PS+SD+ E 
Sbjct: 3   TSVKNNFLPPGLVSNLQEVLLNRKGGSENDPSKSND-----------ESTQPSSSDAVEA 51

Query: 61  --NVDSSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRET 118
             + + SKPV+LVTN DGIE+PGL +LVEALVR+GL NVHVCAPQSDKSVSGHSVTLRET
Sbjct: 52  NSDTECSKPVVLVTNADGIEAPGLNFLVEALVRDGLCNVHVCAPQSDKSVSGHSVTLRET 111

Query: 119 IAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGV 178
           +AV+SAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGV
Sbjct: 112 VAVTSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGV 171

Query: 179 VAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLL 238
           VAGAREAL CGVPS+SISLNWKKDESQESDFKDAV+VCLPLINAA RDI KG+FP+SCLL
Sbjct: 172 VAGAREALFCGVPSMSISLNWKKDESQESDFKDAVTVCLPLINAAIRDIEKGVFPKSCLL 231

Query: 239 NVEIPTSPLTNKGFKFTKQSMWRSTPNWQAVSANRYPAGHFMSNQQSLGLQLAQLGRDAS 298
           N+EIP SPLTNKGFK TKQS+WRSTP+WQAVS NR+PAG FMSNQQSLG+QLAQL RDAS
Sbjct: 232 NIEIPASPLTNKGFKLTKQSLWRSTPSWQAVSTNRHPAG-FMSNQQSLGIQLAQLSRDAS 290

Query: 299 AA 300
           AA
Sbjct: 291 AA 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449458159|ref|XP_004146815.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] gi|449476647|ref|XP_004154795.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307135867|gb|ADN33735.1| acid phosphatase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|224134587|ref|XP_002327441.1| predicted protein [Populus trichocarpa] gi|222835995|gb|EEE74416.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118484339|gb|ABK94047.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224128690|ref|XP_002329066.1| predicted protein [Populus trichocarpa] gi|222839737|gb|EEE78060.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359807197|ref|NP_001241615.1| uncharacterized protein LOC100779772 [Glycine max] gi|255641206|gb|ACU20880.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356556819|ref|XP_003546718.1| PREDICTED: 5'-nucleotidase surE-like [Glycine max] Back     alignment and taxonomy information
>gi|357454581|ref|XP_003597571.1| 5'-nucleotidase surE [Medicago truncatula] gi|355486619|gb|AES67822.1| 5'-nucleotidase surE [Medicago truncatula] Back     alignment and taxonomy information
>gi|297842033|ref|XP_002888898.1| hypothetical protein ARALYDRAFT_476423 [Arabidopsis lyrata subsp. lyrata] gi|297334739|gb|EFH65157.1| hypothetical protein ARALYDRAFT_476423 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
TAIR|locus:2032652385 AT1G72880 "AT1G72880" [Arabido 0.966 0.761 0.649 3.7e-96
TAIR|locus:2129510315 AT4G14930 "AT4G14930" [Arabido 0.683 0.657 0.461 8.8e-47
TIGR_CMR|CJE_0339258 CJE_0339 "acid phosphatase Sur 0.646 0.759 0.377 5.2e-26
TIGR_CMR|CHY_0957264 CHY_0957 "acid phosphatase Sur 0.594 0.681 0.366 8.7e-24
TIGR_CMR|GSU_1523262 GSU_1523 "stationary-phase sur 0.557 0.645 0.371 2.3e-23
UNIPROTKB|Q9KI21258 surE "5'-nucleotidase SurE" [C 0.633 0.744 0.334 1.9e-21
TIGR_CMR|CBU_1671258 CBU_1671 "stationary-phase sur 0.633 0.744 0.334 1.9e-21
UNIPROTKB|P0A840253 surE "broad specificity 5'(3') 0.564 0.675 0.347 4e-19
TIGR_CMR|DET_0797265 DET_0797 "acid phosphatase Sur 0.554 0.633 0.351 5.1e-19
UNIPROTKB|Q9KUI9250 surE "5'-nucleotidase SurE" [V 0.630 0.764 0.327 3.6e-18
TAIR|locus:2032652 AT1G72880 "AT1G72880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 196/302 (64%), Positives = 221/302 (73%)

Query:     1 MTSVRNNLMPPGLVSNLEQVLLXXXXXXXXXXXXXXXXXXXQSNEEA-NXXXXXXXXXXX 59
             MTS +NN +   LVSNL+ VL                     S EEA +           
Sbjct:     1 MTS-KNNGLSAALVSNLQDVL------SKRKVGNEEKVGSDGSAEEAPSTSDSVDVASVE 53

Query:    60 XNVDSSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETI 119
               +D S+P++LVTNGDGI+SPGLV LVEALV EGLYNVHVCAPQ+DKS S HS T  ETI
Sbjct:    54 EEIDDSRPIVLVTNGDGIDSPGLVSLVEALVLEGLYNVHVCAPQTDKSASAHSTTPGETI 113

Query:   120 AVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVV 179
             AVSS ++ GATA+EVSGTPVDC+SL LSGALF+WSKP+LVISGIN+GSSCGH MFYSG V
Sbjct:   114 AVSSVKLKGATAFEVSGTPVDCISLGLSGALFAWSKPILVISGINQGSSCGHQMFYSGAV 173

Query:   180 AGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLN 239
             AG REALI GVPSLSISLNWKK+ESQES FKDAV VCLPLINA  RDI KG+FP+ C LN
Sbjct:   174 AGGREALISGVPSLSISLNWKKNESQESHFKDAVGVCLPLINATIRDIAKGVFPKDCSLN 233

Query:   240 VEIPTSPLTNKGFKFTKQSMWRSTPNWQAVSANRYP-AGHFMSNXXXXXXXXXXXXRDAS 298
             +EIPTSP +NKGFK TKQSMWR  P+WQAVSANR+P AG+FMSN            RDAS
Sbjct:   234 IEIPTSPSSNKGFKVTKQSMWRQYPSWQAVSANRHPGAGNFMSNQQSLGAQLAQLGRDAS 293

Query:   299 AA 300
             AA
Sbjct:   294 AA 295
GO:0003993 "acid phosphatase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0016787 "hydrolase activity" evidence=IEA
TAIR|locus:2129510 AT4G14930 "AT4G14930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0339 CJE_0339 "acid phosphatase SurE" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0957 CHY_0957 "acid phosphatase SurE" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1523 GSU_1523 "stationary-phase survival protein SurE" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KI21 surE "5'-nucleotidase SurE" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1671 CBU_1671 "stationary-phase survival protein SurE" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|P0A840 surE "broad specificity 5'(3')-nucleotidase and polyphosphatase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0797 DET_0797 "acid phosphatase SurE" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KUI9 surE "5'-nucleotidase SurE" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3LOW CONFIDENCE prediction!
3rd Layer3.1.3.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
pfam01975188 pfam01975, SurE, Survival protein SurE 2e-66
PRK00346250 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatas 8e-47
COG0496252 COG0496, SurE, Predicted acid phosphatase [General 4e-42
PRK13935253 PRK13935, PRK13935, stationary phase survival prot 1e-35
TIGR00087244 TIGR00087, surE, 5'/3'-nucleotidase SurE 2e-34
PRK13933253 PRK13933, PRK13933, stationary phase survival prot 2e-34
PRK13932257 PRK13932, PRK13932, stationary phase survival prot 2e-29
PRK13934266 PRK13934, PRK13934, stationary phase survival prot 1e-20
PRK13931261 PRK13931, PRK13931, stationary phase survival prot 5e-15
>gnl|CDD|216821 pfam01975, SurE, Survival protein SurE Back     alignment and domain information 
 Score =  205 bits (524), Expect = 2e-66
 Identities = 76/190 (40%), Positives = 100/190 (52%), Gaps = 13/190 (6%)

Query: 70  LVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGA 129
           L+TN DGI +PG+  L EAL   G   V V AP  ++S  GHS+TL   + V   +    
Sbjct: 4   LLTNDDGIHAPGIRALAEALKALG--EVTVVAPDREQSGVGHSITLHRPLRV---KKVDP 58

Query: 130 TAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICG 189
            AY V+GTP DCV L L+G L    KP LV+SGIN G++ G  + YSG V  A EA + G
Sbjct: 59  GAYAVNGTPADCVKLGLNG-LLDDKKPDLVVSGINHGANLGTDVLYSGTVGAAMEAALLG 117

Query: 190 VPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTN 249
           +PS+++SL         S+ KD       L+      + K   P   LLNV IP  P + 
Sbjct: 118 IPSIAVSLAGN------SEEKDDFETAAKLVRRLVEKLLKNGLPPGTLLNVNIPDLPPSE 171

Query: 250 -KGFKFTKQS 258
            KG K T+  
Sbjct: 172 IKGIKVTRLG 181

E. coli cells with the surE gene disrupted are found to survive poorly in stationary phase. It is suggested that SurE may be involved in stress response. Yeast also contains a member of the family, probable tubulin-tyrosine ligase PBY1. Yarrowia lipolytica PHO2 can complement a mutation in acid phosphatase, suggesting that members of this family could be phosphatases. Length = 188
>gnl|CDD|234732 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>gnl|CDD|223570 COG0496, SurE, Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>gnl|CDD|237566 PRK13935, PRK13935, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|232819 TIGR00087, surE, 5'/3'-nucleotidase SurE Back     alignment and domain information
>gnl|CDD|184406 PRK13933, PRK13933, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|172445 PRK13932, PRK13932, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|237565 PRK13934, PRK13934, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|184405 PRK13931, PRK13931, stationary phase survival protein SurE; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 303
PRK13932257 stationary phase survival protein SurE; Provisiona 100.0
PF01975196 SurE: Survival protein SurE; InterPro: IPR002828 T 100.0
PRK13933253 stationary phase survival protein SurE; Provisiona 100.0
PRK13935253 stationary phase survival protein SurE; Provisiona 100.0
COG0496252 SurE Predicted acid phosphatase [General function 100.0
TIGR00087244 surE 5'/3'-nucleotidase SurE. E. coli SurE is Reco 100.0
PRK00346250 surE 5'(3')-nucleotidase/polyphosphatase; Provisio 100.0
PRK13931261 stationary phase survival protein SurE; Provisiona 100.0
PRK13934266 stationary phase survival protein SurE; Provisiona 100.0
cd03784 401 GT1_Gtf_like This family includes the Gtfs, a grou 91.17
PLN02846 462 digalactosyldiacylglycerol synthase 90.51
PRK10307 412 putative glycosyl transferase; Provisional 89.06
PLN02871 465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 88.65
PF04007 335 DUF354: Protein of unknown function (DUF354); Inte 88.39
PRK00726 357 murG undecaprenyldiphospho-muramoylpentapeptide be 85.56
PF14336291 DUF4392: Domain of unknown function (DUF4392) 84.11
cd03814 364 GT1_like_2 This family is most closely related to 83.28
TIGR00661321 MJ1255 conserved hypothetical protein. This model 80.98
TIGR01426 392 MGT glycosyltransferase, MGT family. This model de 80.77
cd03785 350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 80.32
>PRK13932 stationary phase survival protein SurE; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.5e-65  Score=474.51  Aligned_cols=200  Identities=36%  Similarity=0.508  Sum_probs=175.7

Q ss_pred             CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeC-CceeEEecCChHHHH
Q 022032           64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN-GATAYEVSGTPVDCV  142 (303)
Q Consensus        64 ~~~~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~-g~~~yaV~GTPaDCV  142 (303)
                      .++|||||||||||+||||++|+++|++.|  +|+||||++||||+||+||+++||++++++.. +..+|+|+|||+|||
T Consensus         3 ~~~M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV   80 (257)
T PRK13932          3 DKKPHILVCNDDGIEGEGIHVLAASMKKIG--RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCI   80 (257)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHhCC--CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHH
Confidence            356899999999999999999999999886  89999999999999999999999999998744 556899999999999


Q ss_pred             HHHHhccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecccCCCCCCCcChHHHHHHHHHHHHH
Q 022032          143 SLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINA  222 (303)
Q Consensus       143 ~laL~~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~  222 (303)
                      ++||..++.  .+|||||||||+|.|+|.+++||||||||+||+++||||||||+.+..    ..+|+.+++++.+++++
T Consensus        81 ~lal~~~~~--~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~~~~----~~~~~~aa~~~~~l~~~  154 (257)
T PRK13932         81 KVALSHILP--EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLTTYE----NADFTYAGKFARKLARK  154 (257)
T ss_pred             HHHHHhhcC--CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcccCC----cCCHHHHHHHHHHHHHH
Confidence            999998764  589999999999999999999999999999999999999999996421    23799999998888876


Q ss_pred             HHHHhhcCCCCCCcEEEecCCCCCC-CCCceEEEecCCcccCCcccccccccCCCCC
Q 022032          223 ATRDIGKGIFPRSCLLNVEIPTSPL-TNKGFKFTKQSMWRSTPNWQAVSANRYPAGH  278 (303)
Q Consensus       223 l~~~~~~~~lp~~~~LNVN~P~~~~-~~kGvk~Tr~g~~~~~~~~~~~~~~r~p~g~  278 (303)
                      +.    +..+|++++||||||.++. +.+|+|+||||++.|...   +..+.||+|+
T Consensus       155 l~----~~~~p~~~~LNVN~P~~~~~~~~gik~t~~g~~~~~~~---~~~~~dp~g~  204 (257)
T PRK13932        155 VL----REGLPPDTILSVNIPNVPESDIQGVLITRQGRSRWEED---AIERHDMYGN  204 (257)
T ss_pred             HH----hcCCCCCcEEEEEeCCCCccccCCEEEeeCCCcccccc---eEEeECcCCC
Confidence            54    4568999999999999874 689999999999987643   3445588873

>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family Back     alignment and domain information
>PRK13933 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK13935 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>COG0496 SurE Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>TIGR00087 surE 5'/3'-nucleotidase SurE Back     alignment and domain information
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>PRK13931 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK13934 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>PF14336 DUF4392: Domain of unknown function (DUF4392) Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR00661 MJ1255 conserved hypothetical protein Back     alignment and domain information
>TIGR01426 MGT glycosyltransferase, MGT family Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
1j9j_A247 Crystal Structure Analysis Of Sure Protein From T.M 2e-22
2wqk_A251 Crystal Structure Of Sure Protein From Aquifex Aeol 4e-21
1ilv_A247 Crystal Structure Analysis Of The Tm107 Length = 24 5e-21
3ty2_A261 Structure Of A 5'-Nucleotidase (Sure) From Coxiella 2e-20
2e69_A244 Crystal Structure Of The Stationary Phase Survival 1e-18
2e6h_A244 Crystal Structure Of E37a Mutant Of The Stationary 3e-18
2v4o_A267 Crystal Structure Of Salmonella Typhimurium Sure At 3e-18
2v4n_A254 Crystal Structure Of Salmonella Typhimurium Sure At 3e-18
1l5x_A280 The 2.0-Angstrom Resolution Crystal Structure Of A 9e-13
>pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima Length = 247 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 105/194 (54%), Gaps = 15/194 (7%)
Query: 69  LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEING 128
           +LVTN DGI+S G++ L E L  E  + V V AP  ++S +GHS+T+   + +    I+ 
Sbjct: 3   ILVTNDDGIQSKGIIVLAELLSEE--HEVFVVAPDKERSATGHSITIHVPLWMKKVFISE 60
Query: 129 -ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALI 187
              AY  +GTP DCV LA +  +    +  L++SG+NRG + G  + +SG V+GA E  +
Sbjct: 61  RVVAYSTTGTPADCVKLAYNVVMDK--RVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAM 118
Query: 188 CGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPL 247
             +PS++IS        +  DF+ A    +  +    ++    +     +LN+ +P   +
Sbjct: 119 MNIPSIAIS----SANYESPDFEGAARFLIDFL----KEFDFSLLDPFTMLNINVPAGEI 170
Query: 248 TNKGFKFTKQSMWR 261
             KG++FT+QS  R
Sbjct: 171 --KGWRFTRQSRRR 182
>pdb|2WQK|A Chain A, Crystal Structure Of Sure Protein From Aquifex Aeolicus Length = 251 Back     alignment and structure
>pdb|1ILV|A Chain A, Crystal Structure Analysis Of The Tm107 Length = 247 Back     alignment and structure
>pdb|3TY2|A Chain A, Structure Of A 5'-Nucleotidase (Sure) From Coxiella Burnetii Length = 261 Back     alignment and structure
>pdb|2E69|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein Sure From Thermus Thermophilus Hb8 In Complex With Sulfate Length = 244 Back     alignment and structure
>pdb|2E6H|A Chain A, Crystal Structure Of E37a Mutant Of The Stationary Phase Survival Protein Sure From Thermus Thermophilus Hb8 Cocrystallized With Manganese And Amp Length = 244 Back     alignment and structure
>pdb|2V4O|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 2.75 Angstrom Resolution In Monoclinic Form Length = 267 Back     alignment and structure
>pdb|2V4N|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 1.7 Angstrom Resolution In Orthorhombic Form Length = 254 Back     alignment and structure
>pdb|1L5X|A Chain A, The 2.0-Angstrom Resolution Crystal Structure Of A Survival Protein E (Sure) Homolog From Pyrobaculum Aerophilum Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 3e-50
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 3e-50
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 3e-50
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 7e-49
1l5x_A280 SurviVal protein E; structural genomics, putative 3e-48
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 4e-48
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Length = 247 Back     alignment and structure
 Score =  165 bits (421), Expect = 3e-50
 Identities = 61/190 (32%), Positives = 102/190 (53%), Gaps = 15/190 (7%)

Query: 70  LVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN-G 128
           LVTN DGI+S G++ L E L     + V V AP  ++S +GHS+T+   + +    I+  
Sbjct: 4   LVTNDDGIQSKGIIVLAELL--SEEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISER 61

Query: 129 ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALIC 188
             AY  +GTP DCV LA +  +    +  L++SG+NRG + G  + +SG V+GA E  + 
Sbjct: 62  VVAYSTTGTPADCVKLAYNVVM--DKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMM 119

Query: 189 GVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLT 248
            +PS++IS        +  DF+ A    +  +    ++    +     +LN+ +P   + 
Sbjct: 120 NIPSIAISS----ANYESPDFEGAARFLIDFL----KEFDFSLLDPFTMLNINVPAGEI- 170

Query: 249 NKGFKFTKQS 258
            KG++FT+QS
Sbjct: 171 -KGWRFTRQS 179
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} Length = 261 Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Length = 244 Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Length = 280 Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Length = 254 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 100.0
2wqk_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 100.0
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 100.0
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 100.0
1l5x_A280 SurviVal protein E; structural genomics, putative 100.0
3oti_A 398 CALG3; calicheamicin, TDP, structural genomics, PS 96.27
4fzr_A 398 SSFS6; structural genomics, PSI-biology, protein s 95.6
4amg_A 400 Snogd; transferase, polyketide biosynthesis, GT1 f 95.26
3tsa_A 391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 94.85
3rsc_A 415 CALG2; TDP, enediyne, structural genomics, PSI-2, 94.62
3otg_A 412 CALG1; calicheamicin, TDP, structural genomics, PS 94.59
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 94.2
3h4t_A 404 Glycosyltransferase GTFA, glycosyltransferase; van 93.8
3ia7_A 402 CALG4; glycosysltransferase, calicheamicin, enediy 93.79
2iya_A 424 OLEI, oleandomycin glycosyltransferase; carbohydra 93.01
2iyf_A 430 OLED, oleandomycin glycosyltransferase; antibiotic 90.34
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Back     alignment and structure
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus} Back     alignment and structure
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0 Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 303
d1l5xa_276 c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) { 8e-38
d1j9ja_247 c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga mar 1e-36
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog PAE2908 (SurE-alpha)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  133 bits (335), Expect = 8e-38
 Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 6/189 (3%)

Query: 70  LVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGA 129
           LVTN DG+ SPGL  L +  +  G  +V V AP+S KS +G  +TL + + +   ++ G 
Sbjct: 4   LVTNDDGVHSPGLRLLYQFALSLG--DVDVVAPESPKSATGLGITLHKPLRMYEVDLCGF 61

Query: 130 TAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFY-SGVVAGAREALIC 188
            A   SGTP D V LA         K  +V+SGIN G +    +   SG +  A +A + 
Sbjct: 62  RAIATSGTPSDTVYLATF---GLGRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALL 118

Query: 189 GVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLT 248
           G+P+L+ S   +      ++ +    +   + + A+  +  G+     +++V  P     
Sbjct: 119 GIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLKNGMPQGVDVISVNFPRRLGR 178

Query: 249 NKGFKFTKQ 257
               K  K 
Sbjct: 179 GVRAKLVKA 187
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
d1j9ja_247 SurE homolog TM1662 {Thermotoga maritima [TaxId: 2 100.0
d1l5xa_276 SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyroba 100.0
d1rzua_ 477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 89.43
d2bisa1 437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 86.77
d1pn3a_ 391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 82.32
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog TM1662
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.6e-64  Score=458.50  Aligned_cols=194  Identities=33%  Similarity=0.539  Sum_probs=170.8

Q ss_pred             CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeC-CceeEEecCChHHHHHHH
Q 022032           67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN-GATAYEVSGTPVDCVSLA  145 (303)
Q Consensus        67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~-g~~~yaV~GTPaDCV~la  145 (303)
                      |||||||||||+||||++|+++|++ + |+|+||||++||||+|||||+++|+++++++.. +.++|+|+|||||||++|
T Consensus         1 M~ILltNDDGi~s~gl~~L~~~l~~-~-~~V~vvAP~~~~S~~g~ait~~~~l~~~~~~~~~~~~~~~v~GTPaDcv~~a   78 (247)
T d1j9ja_           1 MRILVTNDDGIQSKGIIVLAELLSE-E-HEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLA   78 (247)
T ss_dssp             CEEEEECSSCTTCHHHHHHHHHHTT-T-SEEEEEEESSCCTTCTTCCCCSSCCCEEECCCSSSEEEEEESSCHHHHHHHH
T ss_pred             CeEEEEcCCCCCChHHHHHHHHHhc-C-CeEEEEecCCCCcCCcccccCCCCcceEEeecCCCceEEEeCCchHHHHHHh
Confidence            7999999999999999999999976 4 699999999999999999999999999998653 567899999999999999


Q ss_pred             HhccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecccCCCCCCCcChHHHHHHHHHHHHHHHH
Q 022032          146 LSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATR  225 (303)
Q Consensus       146 L~~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~l~~  225 (303)
                      |++++.  .+|||||||||+|.|+|.+++||||||||+||+++||||||||+.+.    ...+|+.+++++.++++++  
T Consensus        79 l~~l~~--~~pDlVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~gipsiA~S~~~~----~~~~~~~a~~~~~~li~~l--  150 (247)
T d1j9ja_          79 YNVVMD--KRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANY----ESPDFEGAARFLIDFLKEF--  150 (247)
T ss_dssp             HHTTST--TCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCS----SSCCHHHHHHHHHHHHHHC--
T ss_pred             hhhccc--CcccEEEecccCCCccchhhhhHHHHHHHHHHHhcCCCcceehhhhh----cccchhHHHHHHHHHHHHH--
Confidence            997653  68999999999999999999999999999999999999999999854    2357999998888777664  


Q ss_pred             HhhcCCCCCCcEEEecCCCCCCCCCceEEEecCCcccCCcccccccccCCCC
Q 022032          226 DIGKGIFPRSCLLNVEIPTSPLTNKGFKFTKQSMWRSTPNWQAVSANRYPAG  277 (303)
Q Consensus       226 ~~~~~~lp~~~~LNVN~P~~~~~~kGvk~Tr~g~~~~~~~~~~~~~~r~p~g  277 (303)
                        .+..+|.+++||||||..  +++|+|+|++|+++|..   .+..+.+|+|
T Consensus       151 --~~~~~p~~~~lNVN~P~~--~~kG~k~t~~g~~~~~~---~~~~~~~~~g  195 (247)
T d1j9ja_         151 --DFSLLDPFTMLNINVPAG--EIKGWRFTRQSRRRWND---YFEERVSPFG  195 (247)
T ss_dssp             --CGGGSCTTCEEEEEECSS--CCCEEEECBCCCCEEEE---EEEEEECTTS
T ss_pred             --HhcCCcccccccCCCChh--hccCceeeeeccccccc---cceeeeCCCC
Confidence              456789999999999963  68999999999988763   3334557777
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure